CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033972	Gordonia sp. MMS17-SY073	4 crisprs	WYL,DEDDh,DinG,csa3,cas3,casR	0	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033972_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033972_1

490624-490705

Orphan

Consensus_repeat	Method
CGCTGGTCGAGTGCCGCGCGAGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033972_1

>merge|CP033972|1|490624-490705|CRISPRCasFinder
CGCTGGTCGAGTGCCGCGCGAGCGGAGCAAGGCCCGCAACCACCGCGTTGCCACCGCTGGTCGAGTGCCGCGCGAGCGGAGC

>CP033972|1|1|490624-490705|CRISPRCasFinder
CGCTGGTCGAGTGCCGCGCGAGCGGAGC	AAGGCCCGCAACCACCGCGTTGCCAC
CGCTGGTCGAGTGCCGCGCGAGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP033972.1\|AZG43898.1\|484702_485278_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378185
CP033972.1\|AZG43905.1\|489834_490602_+\|Ribonuclease-BN	unknown	unknown	gnl\|CDD\|293802
CP033972.1\|AZG43913.1\|495592_495841_-\|hypothetical-protein	unknown	unknown	unknown
CP033972.1\|AZG43907.1\|491543_492161_+\|Non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
CP033972.1\|AZG43915.1\|496962_497838_-\|Inosose-isomerase	unknown	unknown	gnl\|CDD\|366542
CP033972.1\|AZG43906.1\|490743_491547_+\|Ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
CP033972.1\|AZG43901.1\|486946_487219_+\|Sulfur-carrier-protein-CysO	unknown	unknown	gnl\|CDD\|340594
CP033972.1\|AZG43904.1\|489000_489759_+\|Glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
CP033972.1\|AZG43914.1\|495913_496957_-\|1,5-anhydro-D-fructose-reductase	unknown	unknown	gnl\|CDD\|223745
CP033972.1\|AZG43912.1\|495390_495636_+\|hypothetical-protein	unknown	unknown	unknown
CP033972.1\|AZG43903.1\|488317_488962_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366759
CP033972.1\|AZG43899.1\|485291_486389_+\|putative-aminopeptidase	unknown	unknown	gnl\|CDD\|239070
CP033972.1\|AZG43909.1\|493398_493743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378962
CP033972.1\|AZG43908.1\|492137_493289_-\|GDP-mannose-dependent-alpha-(1-6)-phosphatidylinositol-dimannoside-mannosyltransferase	unknown	unknown	gnl\|CDD\|340842
CP033972.1\|AZG43910.1\|493739_494225_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226944
CP033972.1\|AZG43896.1\|482978_484283_-\|Nicotinate-phosphoribosyltransferase-pncB1	unknown	unknown	gnl\|CDD\|236426
CP033972.1\|AZG43897.1\|484462_484684_+\|ATP-dependent-Clp-protease-adapter-protein-ClpS	unknown	unknown	gnl\|CDD\|178809
CP033972.1\|AZG43900.1\|486534_486942_+\|CysO-cysteine-peptidase	unknown	unknown	gnl\|CDD\|163701
CP033972.1\|AZG43911.1\|494386_494986_-\|Thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
CP033972.1\|AZG43902.1\|487222_488209_+\|O-phosphoserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|273463

Protein	Function_ID	Function_description	E-value
CP033972.1\|AZG43898.1\|484702_485278_+\|hypothetical-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.38468e-65
CP033972.1\|AZG43905.1\|489834_490602_+\|Ribonuclease-BN	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.80414e-76
CP033972.1\|AZG43907.1\|491543_492161_+\|Non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.96023e-97
CP033972.1\|AZG43915.1\|496962_497838_-\|Inosose-isomerase	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	2.78133e-36
CP033972.1\|AZG43906.1\|490743_491547_+\|Ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	9.62712e-166
CP033972.1\|AZG43901.1\|486946_487219_+\|Sulfur-carrier-protein-CysO	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	3.71168e-43
CP033972.1\|AZG43904.1\|489000_489759_+\|Glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.56973e-115
CP033972.1\|AZG43914.1\|495913_496957_-\|1,5-anhydro-D-fructose-reductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.42444e-56
CP033972.1\|AZG43903.1\|488317_488962_+\|hypothetical-protein	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	5.52446e-25
CP033972.1\|AZG43899.1\|485291_486389_+\|putative-aminopeptidase	gnl\|CDD\|239070	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	6.29895e-80
CP033972.1\|AZG43909.1\|493398_493743_-\|hypothetical-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	4.63191e-25
CP033972.1\|AZG43908.1\|492137_493289_-\|GDP-mannose-dependent-alpha-(1-6)-phosphatidylinositol-dimannoside-mannosyltransferase	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	7.55373e-68
CP033972.1\|AZG43910.1\|493739_494225_-\|hypothetical-protein	gnl\|CDD\|226944	COG4578, GutM, Glucitol operon activator [Transcription].	1.53332e-17
CP033972.1\|AZG43896.1\|482978_484283_-\|Nicotinate-phosphoribosyltransferase-pncB1	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
CP033972.1\|AZG43897.1\|484462_484684_+\|ATP-dependent-Clp-protease-adapter-protein-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.33282e-35
CP033972.1\|AZG43900.1\|486534_486942_+\|CysO-cysteine-peptidase	gnl\|CDD\|163701	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	2.79868e-38
CP033972.1\|AZG43911.1\|494386_494986_-\|Thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.6475e-67
CP033972.1\|AZG43902.1\|487222_488209_+\|O-phosphoserine-sulfhydrylase	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	7.72702e-129

>CP033972.1|AZG43905.1|489834_490602_+|Ribonuclease-BN
MRLTVLGCSGSVGGPGSACSGYLLSVEGERPVLVDCGPGVLSELQRVVDPVDVDVVLSHLHADHCLDLPAMLVWRRYAPRPASGRAALYGPSGTAFRVGAASAEVPGDVDDISDTFDPVEWQDGVEVAVGGLTVKPVKVNHPPETYGLRITGPQGQVIAYSGDTALCDEVVDVAEGADIFLCEATWTHAPDDRPPDLHLSGYEAGQIATKAGVRSLALTHLAPWFDAESILAEARSTFSGPVDLVRPGQVFDLVP
>CP033972.1|AZG43904.1|489000_489759_+|Glutamate-racemase
MGGLTVARAIIDLLPDEDVIYIGDTGNGPYGPLAIPDIRRHALAIGDDLAERGVKAIVIACNTASAACLRDARERYAPIPVVEVILPAVRRSVVATKTGRIGVIGTQATIGSRAYQDSFAAARDVEITAVPCPRFVDFVERGITSGRQILGLAQGYLEPLQEADVDTVVLGCTHYPLLSGVIQLAMGDQVTLVSSAEETAKDLFRVLTEQDLLHPHSDRAAVREFRSTGDPEFFARLSTRFLGPAIGQVQHL
>CP033972.1|AZG43903.1|488317_488962_+|hypothetical-protein
MTTNPAPTGSGRTRQGPRPLWQRSAIIMAAIAALLFVIEAIDVATDYRLDDAGIEPRQVDGLDGILWAPFLHADWQHLFANLIPGLVLGFLLLMAKRFVIVTAIVWVVSGLGVWLFAPPYTVTVGASGIIFGWLTFLLIRGLFNRDLWQILGGLVLFLIYGSVLWGVLPSGSGVSWQGHLFGALGGVLAAWYLADRDRRRKATTTNPQFPGVAS
>CP033972.1|AZG43902.1|487222_488209_+|O-phosphoserine-sulfhydrylase
MARYTSLIESVGHTPLIGLRRLSPRWEDSDPDDPDGGPHVRLWAKLEDRNPTGSIKDRPALRMIEQAERDGLLSPGSIILEPTSGNTGISLAMAARLKGYQLICVMPENTSEERRSLLTMFGARIISSPAAGGSNTAVAMAKDLAAEHPDWVMLYQYGNEANMLAHYEGTGPELFADLPEITHFVAGLGTTGTLMGVGRFLREKNPEIEIVAAEPRYGDEVYGLRNIDEGFVPELYDDSVLTRRFSVQGVDAVARVRELIDTEGIFAGISTGAILQAARGVGRGALKKGQRADIGLVIPDAGWKYLSTGAYEGSLEQAEQALEGQLWA
>CP033972.1|AZG43901.1|486946_487219_+|Sulfur-carrier-protein-CysO
MAITVSIPTILRTHTGGEKRVEASGSTLAEVIDNLESANPGIKERLVADGKLHRFVNVYVNDEDVRFSGGLDTGVDDGDDVTILPAVAGG
>CP033972.1|AZG43900.1|486534_486942_+|CysO-cysteine-peptidase
MLTIGQELVDAMVAHARADHPDEACGIIAGPEGSDRPERFVAMTNAERSPTFYRFDSGEQLKVWREMDRLDEEPVVIYHSHTATEAYPSRTDISYASEPNAHYVLVSTRDADTAEIRSYRIVDAVVTEEPIEIRS
>CP033972.1|AZG43899.1|485291_486389_+|putative-aminopeptidase
MTTSSGIAPAGDRITDVAGILVGHHHRIDDDATVAAPDTDGIGRGWATGTTVVRIDAPGAVCAVDVRGGGPGTRETDLLDPANTVQTAHAVVLTGGSAYGLAAADGVMSGLEAAGVGLRMDELGHVVPIVPAAVIFDLPVGAWENRPDAAFGRSALAASGSGVEVGSVGAGAGARAGALKGGVGTASMMLSDGPAAGVTVGALMVANPVGGVIDPMSGLPWAATDADLLGLGLRPPRGDEIARYGELVAKQTVLNTTIGVVATDAALDSASTRRVAMAGHDGLARAIVPAHSPLDGDTVFAVATGARHPEQPPVPSGMNPDVAMLAEVCRAAAVVVRRAIVGAVLAAGPVAGIPTYRDVLPSAFG
>CP033972.1|AZG43898.1|484702_485278_+|hypothetical-protein
MRTWKRKGRGASTRICSHLDVHEAELLASMVTSMRELLGERESTAPRDELSDVTGIPTGHTAAPTDATLGRLLPDFHRPDQDRELTADVVNGDVNGALRSVHEPYIIDAKMAAAQVVLDTLPQGGGDLALTEEQAAEWLTALNDVRLALGAMLGISEDTPDQLPPDHPHAAHLDVYHWLTVMQELLVESLV
>CP033972.1|AZG43897.1|484462_484684_+|ATP-dependent-Clp-protease-adapter-protein-ClpS
MTIVWDDPVNLMRYVTFVFQKVFGYSESRANQLMMQVHNEGKAVVSAGDRDKMEVDVRKLHAAGLWATMQRDS
>CP033972.1|AZG43896.1|482978_484283_-|Nicotinate-phosphoribosyltransferase-pncB1
MSIDNTALLTDQYELTMVSAALRHPVAHRPCVFEVFARRLPDGRRYGVVAGTGRVLDELTGFRFGDDELAVVRRFLDDDTVDWLREYRFSGDIDGYREGELYFPGSPILTVRASFAEGVLLETLILSILNHDSAIASAAARMVSAAGSRPIIEMGSRRTHERAAVAGARAAYIAGVAATSNLEAARTYGVPSAGTAAHAFTLGFTGPDGPDEKAAFAAQIEALGVGTTLLVDTYDITQGVRNAIEVAGPGLGAVRIDSGDLGVLARKVREQLDDLGATGTKIVVSGDLDEYAIASLRAEPVDTYGVGTSLVTGSGAPTAGMIYKLVEVDGIPVAKRASHKESKGGAKAAARSARPTGTIVEEVVYRATDQVPAADGLTLRPLQIPLVRGGDAVDSLPTLAEGRAHLADALVTLPWEGLGLSHGDPAVPTRYVLG
>CP033972.1|AZG43906.1|490743_491547_+|Ribonuclease-PH
MPRDPGPSLPIVRVGHVTTRADGRADDELRPISFTRGFTSHPAGSVLVEFGGTRVMCTASVTEGVPPWRRGSGLGWLTAEYAMLPSSTHERSRRESTQGKIGGRTHEISRLVGRSLRACIDLGALGENTVAIDCDVLQADGGTRTAAITGAYVALADAVTWLKAAGRLSDPQPLSCMIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDAGTLVEVQGTGEGATFPRATLDKLLDIAMVGTEKLFDAQREVLAAPYPGDLPTPR
>CP033972.1|AZG43907.1|491543_492161_+|Non-canonical-purine-NTP-pyrophosphatase
MTTVLVASRNAKKLTELRRVLDAAGVGGIDVIGLDAVPEYPEEPETGATFEDNALIKAEAGARATGFACLADDSGLEVDALNGMPGVLSARWSGRHGDDRANNDLLLAQIGDVPDERRGAAFVSACALVLPSGEQTVVRGEWRGIILRGPRGANGFGYDPLFVPDDDAAQGRSSAELSPTEKDALSHRGKALAALVPALRELADN
>CP033972.1|AZG43908.1|492137_493289_-|GDP-mannose-dependent-alpha-(1-6)-phosphatidylinositol-dimannoside-mannosyltransferase
MRVRIVQLANFYGARSGGLRTAVDRWGAGYVAAGHEVILVVPGADDRAATMPNGVHRITVHAPRLPFSGGYHVAPPRRVADILRHLRPDAVEVSDRLTLRGFGAWARRRDIHSTMVSHERLDRLLSIAMPDAVARMMADEANRRTADSFDAVVCTTGFAAAEFDRIGATNVAHAPLGVDLDVFDPRHADPAVGARFADDTTTLIVHCGRLSPEKRPDRSIAAVGRLHAARRRVHLVVAGDGPRRPALQRAARGLPVTFLGHVADRAQVAALLASTEISLAPGPHETFCLSALESLASGTPVVASRSSAVAGMVDASCGALAADSPTAFAEAIEQVLELPRPERESAARRRAARYRWPDSVARMLAIHGGSPDLGPRSVVGEFP
>CP033972.1|AZG43909.1|493398_493743_-|hypothetical-protein
MTETTSPTTGTPVAKVRGALLRYRILAWITGLWLLLLVAELVLKYGFDVDALDFVPIVHGWVYFVYLILTIDLAIKVRWPLGKIILTCIAGTIPFLSFWFEHIRTKEVKAEYNL
>CP033972.1|AZG43910.1|493739_494225_-|hypothetical-protein
MESGSSTPGHRRRPALIALVVVAAVACLALAYWQWDVYESSAGTAQNLGYALQWPAFALAVIWAYRRFVVLENNPDEQRKIAHDAKGATEIPAGILPDRPTTPSASSLRSTPSANEDSTLADYNRYLADLGRSYAADSGSASGAGPTSESTSESSSEDQRR
>CP033972.1|AZG43911.1|494386_494986_-|Thymidine-kinase
MSEPAELTFYHGPMGAGKSTFALQTHFNQSRQGRVGLLLTKHDRSGEPAVTSRIGLAAPAVVVGDGDDLHDVVMHRHRRERLDFVVCDEAQFLAPAQVEDLVRIVDEVGIDVFAFGLLTDFTAALFPGSARLVELADGVHRMQAIVLCWCGRPGFLNARVVGGQVARAGELVAIGDTELGPVIYQALCRRHFMGGQLEE
>CP033972.1|AZG43912.1|495390_495636_+|hypothetical-protein
MDQNNKDELRQISEVQDRLIGMYTHRDPDEVATAVQSAYRHFDDTRVRDFVPLLVERRANSDLGGSDVMVDPAAVPPHLGE
>CP033972.1|AZG43913.1|495592_495841_-|hypothetical-protein
MDGDPEGDASRLQARLLIVELERAADAIVEQLESGNPRASDAGVRRAELYEARAHIRRLQERYGLSAIATRPDAGARRPDRP
>CP033972.1|AZG43914.1|495913_496957_-|1,5-anhydro-D-fructose-reductase
MLRHLPSPRTPEPTSAPVLRWGIMGPGWIAQRFVGGLHKHTRQRVTAVGSRSAGRADEFARRMNIPSSHEGYDALLADPDVDIVYISTPHPQHHGCALAAIAAGKHVLVEKPMGINAIQAQEIFAAARTAGVFAGEAMWTRFLPKFDVIRQILDDGVLGTRRTVVADHGEYFTTDHRIYDPALAGGPLLDLGTYPVALAQWVLGEIGQVAAFGRPATTGVDGVELNGQIAATMGHAGGGQSLITTTILADTPTTAFVAGENAYLSVPGPFYQPGPFTLVQRDGEHLTHEEEPAQHEDGLHFSAADAARTIADGATESRIHPGADVIATLDAMDRIRAEIGIVFPGER
>CP033972.1|AZG43915.1|496962_497838_-|Inosose-isomerase
MKVALDPTPFHHSHSLLELPGVVADLGYDHLQLTPHVDMIPFFNHPKADDDLVAKFRKACSAAGVGIASVLPVLRWSGPDEDAREAAVRYWKRAIQITIDLGVNVMNTEFSGRPEKAEESERAFYRSMEELVPIIEREGIDVRIDPHPDDFVEDGLSAIRMIRGINSKNVGLVYVACHSFHMGGNMAEIMRTAGDMLRLVHVADTMDHHASHGLRYITNPPGNAVRVHQHLKIGDGDVDWDEFFGTLGEIGFYDRDDTVMVSSVFAENENAPDVSRYQLATMNDYVTKYAR

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Crispr_ID: CP033972_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033972_2

1295889-1295964

Orphan

Consensus_repeat	Method
ACCCGTCCCAGCGCGGCGCCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033972_2

>merge|CP033972|2|1295889-1295964|CRISPRCasFinder
ACCCGTCCCAGCGCGGCGCCATCAAATAGCGGCGCACGCCACGTGACCCGAAACCCGTCCCAGCGCGGCGCCATCA

>CP033972|2|2|1295889-1295964|CRISPRCasFinder
ACCCGTCCCAGCGCGGCGCCATCA	AATAGCGGCGCACGCCACGTGACCCGAA
ACCCGTCCCAGCGCGGCGCCATCA

Protein	Signature genes	Signature genes Name	Protein_function
CP033972.1\|AZG44624.1\|1290477_1291572_-\|Sorbitol-dehydrogenase	unknown	unknown	gnl\|CDD\|176188
CP033972.1\|AZG44638.1\|1305038_1305518_-\|F420H(2)-dependent-quinone-reductase	unknown	unknown	gnl\|CDD\|211538
CP033972.1\|AZG44629.1\|1296011_1297115_+\|Trehalose-import-ATP-binding-protein-SugC	unknown	unknown	gnl\|CDD\|236947
CP033972.1\|AZG44637.1\|1304195_1305023_+\|Short-chain-enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235714
CP033972.1\|AZG44622.1\|1287579_1288986_-\|Xylulose-kinase	unknown	unknown	gnl\|CDD\|198375
CP033972.1\|AZG44625.1\|1291718_1292639_+\|Deoxyribonucleoside-regulator	unknown	unknown	gnl\|CDD\|225263
CP033972.1\|AZG44630.1\|1297179_1298943_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226849
CP033972.1\|AZG44623.1\|1288982_1290467_-\|Polyol:NADP-oxidoreductase	unknown	unknown	gnl\|CDD\|223324
CP033972.1\|AZG44621.1\|1286435_1287518_+\|2,4-diaminopentanoate-dehydrogenase	unknown	unknown	gnl\|CDD\|226326
CP033972.1\|AZG44619.1\|1284417_1285497_-\|Inner-membrane-transport-permease-YbhR	unknown	unknown	gnl\|CDD\|378925
CP033972.1\|AZG44626.1\|1292638_1294027_+\|Erythritol/L-threitol-binding-protein	unknown	unknown	gnl\|CDD\|270303
CP033972.1\|AZG44632.1\|1299413_1301270_-\|N-acyl-D-glutamate-deacylase	unknown	unknown	gnl\|CDD\|226179
CP033972.1\|AZG44628.1\|1294989_1295865_+\|Inner-membrane-ABC-transporter-permease-protein-YcjP	unknown	unknown	gnl\|CDD\|223472
CP033972.1\|AZG44627.1\|1294030_1294990_+\|Trehalose-transport-system-permease-protein-SugA	unknown	unknown	gnl\|CDD\|224096
CP033972.1\|AZG44620.1\|1285573_1286257_-\|3-alpha-(or-20-beta)-hydroxysteroid-dehydrogenase	unknown	unknown	gnl\|CDD\|187600
CP033972.1\|AZG44635.1\|1302914_1303571_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239527
CP033972.1\|AZG44633.1\|1301377_1302316_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197666
CP033972.1\|AZG44634.1\|1302312_1302873_+\|Dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
CP033972.1\|AZG44636.1\|1303652_1304165_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367130
CP033972.1\|AZG44631.1\|1298974_1299424_-\|Epoxide-hydrolase-EphG	unknown	unknown	gnl\|CDD\|273970

Protein	Function_ID	Function_description	E-value
CP033972.1\|AZG44624.1\|1290477_1291572_-\|Sorbitol-dehydrogenase	gnl\|CDD\|176188	cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	6.45965e-158
CP033972.1\|AZG44638.1\|1305038_1305518_-\|F420H(2)-dependent-quinone-reductase	gnl\|CDD\|211538	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c., deazaflavin-dependent oxidoreductase, nitroreductase family. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. [Unknown function, Enzymes of unknown specificity].	7.20771e-28
CP033972.1\|AZG44629.1\|1296011_1297115_+\|Trehalose-import-ATP-binding-protein-SugC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.10334e-168
CP033972.1\|AZG44637.1\|1304195_1305023_+\|Short-chain-enoyl-CoA-hydratase	gnl\|CDD\|235714	PRK06142, PRK06142, crotonase/enoyl-CoA hydratase family protein.	4.82228e-161
CP033972.1\|AZG44622.1\|1287579_1288986_-\|Xylulose-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	2.07962e-157
CP033972.1\|AZG44625.1\|1291718_1292639_+\|Deoxyribonucleoside-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.13524e-79
CP033972.1\|AZG44630.1\|1297179_1298943_+\|hypothetical-protein	gnl\|CDD\|226849	COG4425, COG4425, Predicted membrane protein [Function unknown].	0
CP033972.1\|AZG44623.1\|1288982_1290467_-\|Polyol:NADP-oxidoreductase	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	0
CP033972.1\|AZG44621.1\|1286435_1287518_+\|2,4-diaminopentanoate-dehydrogenase	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	2.11716e-97
CP033972.1\|AZG44619.1\|1284417_1285497_-\|Inner-membrane-transport-permease-YbhR	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.49723e-26
CP033972.1\|AZG44626.1\|1292638_1294027_+\|Erythritol/L-threitol-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.14382e-75
CP033972.1\|AZG44632.1\|1299413_1301270_-\|N-acyl-D-glutamate-deacylase	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	3.03751e-148
CP033972.1\|AZG44628.1\|1294989_1295865_+\|Inner-membrane-ABC-transporter-permease-protein-YcjP	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.75676e-68
CP033972.1\|AZG44627.1\|1294030_1294990_+\|Trehalose-transport-system-permease-protein-SugA	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.13554e-76
CP033972.1\|AZG44620.1\|1285573_1286257_-\|3-alpha-(or-20-beta)-hydroxysteroid-dehydrogenase	gnl\|CDD\|187600	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.44339e-102
CP033972.1\|AZG44635.1\|1302914_1303571_-\|hypothetical-protein	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.2353e-16
CP033972.1\|AZG44633.1\|1301377_1302316_+\|hypothetical-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	3.33109e-19
CP033972.1\|AZG44634.1\|1302312_1302873_+\|Dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	5.26841e-24
CP033972.1\|AZG44636.1\|1303652_1304165_+\|hypothetical-protein	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	0.00960539
CP033972.1\|AZG44631.1\|1298974_1299424_-\|Epoxide-hydrolase-EphG	gnl\|CDD\|273970	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.	3.73336e-08

>CP033972.1|AZG44628.1|1294989_1295865_+|Inner-membrane-ABC-transporter-permease-protein-YcjP
MSTSTETRASSTTVDGVEITRRSNPRGVLLTVFTWILALGFFFPVLWMVLTAFKKESDAATNPPTFIFTPTLEQFKEVFDAGIGTPLMNSLFATIVSTILVLALGVPAAFALSLRPVRKTQDALFFFISTKMLPIVAAIIPLYVIVGRIGMLDNIWTLVILYTAMNLPIAVWMMRSFFLEVPSELLEAASIDGASLWTSVREVILPLISPGIAATALICVIFSWNEFFFAVNMTAVNAQTMPVFLTGFMSGQGLYWAQLSAASVLAALPVVICGWIAQNKLVRGLSFGAIK
>CP033972.1|AZG44627.1|1294030_1294990_+|Trehalose-transport-system-permease-protein-SugA
MATALAQPGADPQPRSDEPLKSHRDHISRAEGWRRRGPLLPALIFMIVVTQIPFVFTLFYSTQSWNLVRPGSRSFVGLDNYFAVFTDGQFWRVTLNTIVLIVGTVLASVILGLIFALLLDRKFLGRGIVRTLLITPFLVTPVAAALLWKTSLLSPTNGLVNWALSPFGVHTDWLSQYPLMSVIAELVWQWTPFMMLLILAGLQSMPHDISEAARVDGATSFRLFRELTLPHLRRFIELGAVLGAIYLVNTFDAVYMMTSGGPGVSSANLPFYIYQRAFLGFDIGQAAAMGVVTVIGTIVVASLALRLIFKSFTGNEEAA
>CP033972.1|AZG44626.1|1292638_1294027_+|Erythritol/L-threitol-binding-protein
MAERPGFARRIRRASRRSRMAAASGAAALALVMTGCSGAGSLTDGGGDAVTVAMVSNSQMQDAVKLSSQFEQQNPGIKLKFVTLSENEARAKITSSVATGGGEFDVVMISNYETPMWAENGWLVNLTPYMDADPSYAADDFIPTLKTALSYKGSMYSAPFYGESSFLMYNKKMFADAGVTLPAKPTWPEVAEAAAKLHRGDVSGICLRGKPGWGELLAPLDTVINAFGGRWFDEDWNAQLTSPEVKKAVQFYVDTVRKDGEPGAASSGFQECGNLLSQGQTAMWYDATSAVSVLESPDTSTIAGDVGYLPAPSMAKSDNGWLYTWSLGIPTSSAKREQAWKFINWMTNRDYIKHVADTLGASHIPPGSRMSTYELPAYKEISAPFADATLSAMTTADQLKPTLKPVPYTGIQFLAIPEFQDLGTRVSQQISAAIAGQISVDTALEQSQKYAETVGKTYQKER
>CP033972.1|AZG44625.1|1291718_1292639_+|Deoxyribonucleoside-regulator
MYHLEGLTQAEIATRLGVSRPTAGRLVARARAQGLVQVTVSAPGHLSASIHTDVERCVEETFGLDEALVIDEIADGTASGNAALGRAGASVLARRIQATDVLGFTWGPEQVAVADAMTANSSCRQVVQMDGSMTSVEYHTGVDHALSRLSDRLHAQPMRLVAPLYADPDTVTALERDSILSQSLSAARSANVMLFGVGSVSTSTTLFEGAFIDAIVLDELDELAAVGEIGGRFYDAHGVAVASTLVDRTVSVPLDSVRACPTSILVSGGEHRRDSILGALRGGYATILVTDLPTAEWLVAQQKGDH
>CP033972.1|AZG44624.1|1290477_1291572_-|Sorbitol-dehydrogenase
MHATIDDESDLSIRTMRSSVLHPDGGLTVEDRPVPTPGPGEVLIRVSAVGVCGSDTHYLRHGRIGTHVVETPLVLGHEASGTIVAVGGGVSRSRVGERVSIEPQTPDPASDESRRGLYNLCPHMRFYATPPVDGALCEFVTIGAAFAHSVPDRVSDEAAALCEPLSVAIAAIRKADVGMGDSVLIAGAGPIGLMCAQVARAAGATTIVVSEPDPDRREVARRFGATDVVSPGATVDPVGAFIDASGVEPAVIGAMSALRPAGRAVLVGMGTDTMALPVSLIQNREIVLTGVYRYANTWPTALSLITSGRVDLDSMVTGRFGLDDTRAALDADRIPGSIKAVVYPGMPRHPTSGTDRPTPTTDNT
>CP033972.1|AZG44623.1|1288982_1290467_-|Polyol:NADP-oxidoreductase
MTETVELTQSTLPEIDGAATPDYDRTRIVTGIVHFGVGGFHRAHQAMYLDRLLATGDDGAFEWGICGVGVRPPDAAMRDALVPQDGLFTLTLKDPEGGVETGVIGSITDYLFAPDDPERVIEKLAAPDTRIVSLTVTEGGYNFSPATGEFDTENPQIVADLADGAVPVTVFGLVVEALRRRRARGIPSFTVMSCDNIQGNGEMAESTFLAFARLKDPELADWMAEHTRFPNSMVDRITPATPADLRAEVLTRTGIDDRWPVVAEPFTQWVLEDRFTMGRPRLEDVGVQIVDDVTPYELMKLRLLNASHQALCYFGYLMGYRYVHDATADPLIATLLRRYMNDEGRPTLRPVRGVDLDDYTETLIQRFSNPAIADTIARLCQDSSDRIPKWLVPVIRERLTDGGDVTLAAAVVASWTRYAEGVDEDGDEISVVDPLADRLIPLARESRAESLAFVSDTTLFGDLAEDAGFTKPYLAALESLRRDGARATLEELLG
>CP033972.1|AZG44622.1|1287579_1288986_-|Xylulose-kinase
MTDTRATLVAGVDSSTQSCKVVVCDADTGRVVRAGSSPHPAGTEIDPEQWWDALNRAIGEAGGLDDVAALSVAGQQHGLICLDGDGSVIRDALLWNDTRSAPSAAALVDELGGAQEWASQVGVVPVASITATKLRWVADHESDVADATAAVCLPHDWLTWRLRGADGLDTLVTDRSDASGTGYFSAADGAYREDLLQLAFGGRRPLLPRVLEPAEVAGRTGTGHVLGVGAGDNAAAALGLAAGAGDCVVSLGTSGVISAVTETPARDGAGLVAGFADATGRQLPLVCTLNGAPVLATAAGMLGVDLDEFGRLALSADVGSSGLVMVPYLSGERSPNLPDATGSIVGITGGNATRANMARAAVEGLLCSLVYCMELIRDQGVAIDRVLMIGGGSRSEAVLAIAPGLFGSPVTVPAPGEYVALGAARQAAWALTGELPAWKVPAAQRTGTAIGPEVYARYRSAAELILSR
>CP033972.1|AZG44621.1|1286435_1287518_+|2,4-diaminopentanoate-dehydrogenase
MAIRVAHVGTGNVGRLALRQLIDDARFELVGLCVSTPDKVGRDAADLAGLDRGPTGVVATADLASIIAAAPDCVVYCAMGDTRPVEALDDCIRFLSAGIDVVGSAPVSLQYPWGVMPPKVIAKVEAAAAEHEASIFVTGVDPGFANDLVPLVFAGTCQRVEQVRCMEIADYATYDGAAVMFDVMGFGKPMDETPMLFLPGVLGLAWGTTIRQLAAGLGVTVDEIVERYAEEPAPDSFDIAAGHIAAGTRAAVRFEIIGMVAGAPTIVIEHVTRLRDDLGADWATPAQPGGCYRVEIVGEPSYRVDICPTSEHGDHNHAAIVAAAGRIVNAIPVVIDGPPGIRTALDLPFVVGAGTGSGAQ
>CP033972.1|AZG44620.1|1285573_1286257_-|3-alpha-(or-20-beta)-hydroxysteroid-dehydrogenase
MGASHARMLVAEGAKVVLGDILDDEGKALADELGDAARYVHLDVTSPDDWAAAVATAVDDFGKLNVLVNNAGIVNGSTLQKFRLDKWKQIIDVNLTGTFLGMQAAVDPMIAAGGGSMINVSSVEGLRGSPWAHGYVASKWGVRGLAKSAALELAPHNIRVNSIHPGMIRTPMTEGLPEDIVKTPLGRPAESSEVSTFIVFLASDESSYATGTEFVMDGGLTADVPHN
>CP033972.1|AZG44619.1|1284417_1285497_-|Inner-membrane-transport-permease-YbhR
MRAMILKEFRELRRDPRTLAMLIVLPLLLLVIFGYAANFYVSSVQTAVVGPSAEQVSRSLPSYFEVTETNVDASTSQAEELLRENKVDVAIVSASDPRQPATALVDGSNLFAAQSTVGILNKLGDQIKVDVLFNPDLKTSWVMVPAIIGLILTFIGTIVTSIGLVREREAGTLEQLAVMPIAPSQVILGKIVPYFLLAAVDMIVVTVLGMVLFDVPFNGSVLVFALGAAIFLFVVLGLGVLISTISQTTGQAIQTAFLLLMPQILLSGMIFPLDAMAAGVRWIGYLLPLTYFTMISQGVMLRDAPIESLWIPLVVLTAMAVVVFTGATLRFRRDLAPDVSKVKTASGSTSVDPADAGAA
>CP033972.1|AZG44629.1|1296011_1297115_+|Trehalose-import-ATP-binding-protein-SugC
MASITYDNACCVYPGADTLAVDRLNLDITDGEFVVLVGPSGSGKSTALRMLAGLEEIDSGQIRIGGDNMVGVAPKDRDIAMVFQNYALYPNKTVGENMGFALKMRGIGTEERKQKVAEAARLLDLTDYLDRKPAKLSGGQRQRVAMGRAIVREPQVFCMDEPLSNLDAKLRVQTRTQIAALQRRLGTTTVYVTHDQVEAMTMGDRVAVLKNGALQQFATPADLYDRPVNAFVAGFIGSPAMNLFTAPVTDGTITIAGSTVDLDNEAQGLLHKSGLTHVIVGIRPEHLAIGRDNGINADVALLEELGSESYVYAEVKDPTITTLDGDPVTLVARSPHRAPAKLGDAIRLHQADRAVHLFDPTSGNRLV
>CP033972.1|AZG44630.1|1297179_1298943_+|hypothetical-protein
MTSDSTTSEDAGHPETASGHAQPEESAPPTTRPDDDGRNGRTGWWRRHRRRYAFAGMIVALVFLWFSLTPSLLPRDALFQGLVSGASAAVGYGLGVFLTWLARFMISRDESWRSATRTSWIVLAVIAVIGTALMLIWFSQWQNDIRDLMGVDHLGWTAYPLIAVILVIIFVLLVTLGQAFGSLVRWSVRQLNRVAPPRISAVIGVGLVIALTVFVLNGVVAKYSMQWLNSSFAAANEETKADNSPPTSALRSGGPGSLVTWDSLGREGRVFVSRGPDTGALTQFNGAPAMEPIRVYAGLESGDSIRENAELAADELVRTGGLQRKLVAVGSTTGSGWVNKATVDSLEYMYNGDTAIVSMQYSYLPSWLSFLVDKERARQAGRALFEAVSERVSAIPEAERPKLVVFGESLGSFAGEAAFGSIPALAARTDGALFSGPTFNNTLWNDTTRERDAGSPQVLPVYDNGAQVRFIADETDLTRPDAPWKSSRVVYLQHASDPITWWNPQLILNEPDWLSEPRGRDVLSATRWIPFVTFLQVSADMAVAVNVPDGHGHDYMSAIPYAWAAMLQPPGWTETKTAALLPRLNRD
>CP033972.1|AZG44631.1|1298974_1299424_-|Epoxide-hydrolase-EphG
MSADPADIVRGLWAALARRDWDAVTPFLADDCIYVDVPFGPTLAARGPVDIVKRIKVGFEPLTAYANHDGLLVSTGDDVIYEHSETWEWPTGEVAVLPFVTVHRIRDGQIILWKDYWDSATLIQNAPPTWMSDLASADTSWVFDATGHI
>CP033972.1|AZG44632.1|1299413_1301270_-|N-acyl-D-glutamate-deacylase
MSTYSLTLIRRHVSNGSVTYDTIIRDGLWFDGTGTPPAVRNIGIRDGSVAVVSADPLEEAGCRDVVDAAGLWVMPGMIDIHTHYDVEVLAQPGLSESLRHGVTTILVGSCSLSTIHVDGTDAGDLFGRVEAIPRQNVIDIVDRHKTWSTPADYIDALEDRPLGPNVAAFIGHSDMRTAAMGLDRATRKSVRPTASEQEQMERWLSMALDAGFVGMSSQQLLFDKLDGDTCRSRTLPSTYAKPRELRRLKAILRRTGRILQAGPDITNPLNVGSQVFTSMGIGRNTLKTSLLSAADIKANPFAIKLMGPLAALANRFRGDFRWQHLPVPFEVYADGIDLVIFEEFGSGAAALHLKEEVERNDLLRDEDYRRRFRKDYDTKFGMRVWHRDFFDAQIVACPDTSVIGKSFGEVGDDRGGLHPVDAFLDLVLEHGTDLRWRTTISNHRPEMLQQMAREPGIQFGFSDAGAHLRNMAFYNFGLRLLRHVYSAQCAGRPFMEVSAAVHRMTGELADWYGIDAGHLRPGDRADLMIVDPRHLDDTLDAYAEAPIPAYGGLSRMVNRNDDTVVAVYVSGRKVVEDGVPTDLVGVTRTGRFLRHGRRAPAVPAAPSPAPQQAFADVR
>CP033972.1|AZG44633.1|1301377_1302316_+|hypothetical-protein
MTEPGRDRIRELLDAVLADDNHTLGDMAAGAHASAFHFSRQFSRHVGESPVALRRRVMLERAAWQLQRGESVTDSAFAAGYDSVEGFARAFSRAFGHPPSRIGSQADRGHWLPSPNGVHFHSPSVLYVDNGAATEESAGDVLSLMVRHDLDDVSALLEAAKDIDDSAYRARRLRGHRPLAWSGPEESLAEVFTHLVLDKQPWLASIAGDDDPTLDTPDDVQTLTEVHAAIAPRWLALTRDIDRRDAWSDSIVDAICDPPESFLLSQIWAHVLTFSTHRRQIARWMLSDAGVDVAAIDPDPIMWHRQRSGGTL
>CP033972.1|AZG44634.1|1302312_1302873_+|Dihydrofolate-reductase
MTTARVRYYTATTLDGYLADQHDSLDWLLTQPIDEDGAMNYGSFIEEIGAMVMGYTTYAWLLEHEVGDGKPWPYDIPCFVFTHRDLAPVADSVRIVEGLPADHRSAIVDAAAGKDTWVVGGGDLAAQFADAGLLDEVVVSIAPVTLGAGRPLFPRRFDLELLEVDRNRAFVCARYAVVGPRPVASP
>CP033972.1|AZG44635.1|1302914_1303571_-|hypothetical-protein
MSGYFTEEIPAEELTRQMEVARGVGDSVRALVAATVVTDVDEDDVIEAQRLIDAATAILERRRIDSSFGIRFNSDGRQRNWGNAVEGIRNPVAPPVEFEAGDDRVWAEFSLGPQYEGPPGLVHGGVIALILDQVLGHAAVHAGAPGMTGTLSIRYRQGTKLGSMRTEAWIDRTEGVKTFAKGQISTADGICAEAEGIFIMPRWARELDIDRRSRIGDA
>CP033972.1|AZG44636.1|1303652_1304165_+|hypothetical-protein
MNENTFSFCYRVVMSRIGGFADDDIVGWLGLSPTLGGALGDYANAVYNQGRLDVRTRELARMVIAGHNECAVCRGTRAASSGLDEEFYLHVDEWATWPDYSDTERVAAEFAHRFATDHIGLREDEEFWQRCHVSLTDELVVDLALSCALWLGQGRALRVLDVGQACRLTI
>CP033972.1|AZG44637.1|1304195_1305023_+|Short-chain-enoyl-CoA-hydratase
MSDQQWKAFEVSISDFVAEVTLTGPGKGNAMGPDFWRELPEICAQLDRDDDVRAILLTGSGAHFSYGLDLPAMAGDLGSVLAEGAKARARTEFHDMVRRMQGAISAVADCRKPVVAAVSGWCIGGGVDLISAADIRYASADAKFSVREVKVAMVADVGSFARLPLIIGDGHLRELALTGKDIDADRALRIGLVNDVLPNHEGLLATARATAAEIAANPPLVVQGVKSVLDHTRRPAVEDSLRYVAAWNSAFLPSDDLTEAISAVFEKRPPEFRGA
>CP033972.1|AZG44638.1|1305038_1305518_-|F420H(2)-dependent-quinone-reductase
MGALTPLAIKIGSISWMPRLLPQIVVCDNALHTLTCQRYGLLDVAGLPNIDLRVVGRKSGAVRSTRLLAVPTESGAWLIAGSYFGGPEMPQWVYNLRATETVEVGHRGRTTTMTCRELDGDDRATAWKRMVEVWPNFDLYVARTERTIPVFVLEPIALV

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Crispr_ID: CP033972_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033972_3

1603387-1603466

Orphan

Consensus_repeat	Method
AGCGCACCACCCGCCCCCGCTGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033972_3

>merge|CP033972|3|1603387-1603466|CRISPRCasFinder
AGCGCACCACCCGCCCCCGCTGATCCAACCCGCTGATCGAGTAGGTTCCGAGCGCAGCGCACCACCCGCCCCCGCTGATC

>CP033972|3|3|1603387-1603466|CRISPRCasFinder
AGCGCACCACCCGCCCCCGCTGATC	CAACCCGCTGATCGAGTAGGTTCCGAGCGC
AGCGCACCACCCGCCCCCGCTGATC

Protein	Signature genes	Signature genes Name	Protein_function
CP033972.1\|AZG44882.1\|1599214_1600033_+\|putative-ABC-transporter-ATP-binding-protein-YlmA	unknown	unknown	gnl\|CDD\|224044
CP033972.1\|AZG44892.1\|1607615_1609370_+\|Succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236185
CP033972.1\|AZG44893.1\|1609369_1610173_+\|Succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
CP033972.1\|AZG44884.1\|1600718_1601045_+\|hypothetical-protein	unknown	unknown	unknown
CP033972.1\|AZG44877.1\|1594433_1594817_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372719
CP033972.1\|AZG44886.1\|1601976_1603374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371058
CP033972.1\|AZG44881.1\|1597576_1599208_+\|putative-phosphomannomutase	unknown	unknown	gnl\|CDD\|100092
CP033972.1\|AZG44889.1\|1606095_1606497_-\|Cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142
CP033972.1\|AZG44880.1\|1596770_1597574_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
CP033972.1\|AZG44885.1\|1601044_1601980_+\|Murein-DD-endopeptidase-MepS/Murein-LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|366353
CP033972.1\|AZG44887.1\|1603592_1604732_-\|Adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
CP033972.1\|AZG44888.1\|1604728_1606099_-\|Thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
CP033972.1\|AZG44895.1\|1610850_1612356_+\|Putrescine-importer-PuuP	unknown	unknown	gnl\|CDD\|223605
CP033972.1\|AZG44890.1\|1606721_1607129_+\|Succinate-dehydrogenase-2-membrane-subunit-SdhC	unknown	unknown	gnl\|CDD\|239581
CP033972.1\|AZG44879.1\|1596036_1596735_-\|Carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|119339
CP033972.1\|AZG44896.1\|1612345_1613278_+\|Universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
CP033972.1\|AZG44878.1\|1594830_1596024_-\|putative-hydrolase-YxeP	unknown	unknown	gnl\|CDD\|349936
CP033972.1\|AZG44894.1\|1610315_1610735_+\|hypothetical-protein	unknown	unknown	unknown
CP033972.1\|AZG44883.1\|1600045_1600669_-\|Uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
CP033972.1\|AZG44891.1\|1607139_1607598_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239580

Protein	Function_ID	Function_description	E-value
CP033972.1\|AZG44882.1\|1599214_1600033_+\|putative-ABC-transporter-ATP-binding-protein-YlmA	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.26621e-76
CP033972.1\|AZG44892.1\|1607615_1609370_+\|Succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP033972.1\|AZG44893.1\|1609369_1610173_+\|Succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	5.59414e-142
CP033972.1\|AZG44877.1\|1594433_1594817_+\|hypothetical-protein	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	1.37036e-30
CP033972.1\|AZG44886.1\|1601976_1603374_+\|hypothetical-protein	gnl\|CDD\|371058	pfam10446, DUF2457, Protein of unknown function (DUF2457). This is a family of uncharacterized proteins.	4.7637e-07
CP033972.1\|AZG44881.1\|1597576_1599208_+\|putative-phosphomannomutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
CP033972.1\|AZG44889.1\|1606095_1606497_-\|Cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	1.38715e-61
CP033972.1\|AZG44880.1\|1596770_1597574_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	3.48216e-127
CP033972.1\|AZG44888.1\|1604728_1606099_-\|Thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
CP033972.1\|AZG44887.1\|1603592_1604732_-\|Adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.78848e-153
CP033972.1\|AZG44885.1\|1601044_1601980_+\|Murein-DD-endopeptidase-MepS/Murein-LD-carboxypeptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	4.22332e-29
CP033972.1\|AZG44895.1\|1610850_1612356_+\|Putrescine-importer-PuuP	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.04013e-29
CP033972.1\|AZG44890.1\|1606721_1607129_+\|Succinate-dehydrogenase-2-membrane-subunit-SdhC	gnl\|CDD\|239581	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	8.48995e-41
CP033972.1\|AZG44879.1\|1596036_1596735_-\|Carnitinyl-CoA-dehydratase	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	3.45321e-39
CP033972.1\|AZG44896.1\|1612345_1613278_+\|Universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.05524e-11
CP033972.1\|AZG44878.1\|1594830_1596024_-\|putative-hydrolase-YxeP	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	9.63116e-180
CP033972.1\|AZG44883.1\|1600045_1600669_-\|Uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	3.93883e-102
CP033972.1\|AZG44891.1\|1607139_1607598_+\|hypothetical-protein	gnl\|CDD\|239580	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	4.80839e-38

>CP033972.1|AZG44886.1|1601976_1603374_+|hypothetical-protein
MITAGFTTGPRRAFTPSTQGRYPSSQVASLRCVLMAGDIVPIELGLTDGNIFTLWAPRWREDDDEWEAFLGLDEDLYGFPGVAELTAFIRNDDDNDLVDHPAWPTVVGLQADELVPDDKHTYDLVGVPELAAEDPTPEVIAELEDALEIVRILGEVCELTVITKFFNGNPILGAVTTGTRNFVGRDGVDLWVRIGRLIAKHWDDVIDAVDDVITTPKVDAAAVVTAEAELEAAESAEDEDEPVDDELEIVEGHADENGESDESDDDLDDDTDDDEDDDEIDDDDFWAGVGIDPIKIVTGDGEYLSLRCYLGDDPVFLGTDGKIFVFTSARSLSRFLADSDDHDLADVSTFDEVRTAATDGSLEFDVIDDNVYVLPGLADDITDGPRRIDRNQLDLAVELLTDAADYAEDEAVNEALGSTTPLGWFVDYAINPDPKRLAPSPPFDNESDAWRALVHDFEGRLVKKS
>CP033972.1|AZG44885.1|1601044_1601980_+|Murein-DD-endopeptidase-MepS/Murein-LD-carboxypeptidase
MLTIDILIAPLRIMITALGTGVLPPGNPADRLRSAQPHLEQIRQGSTTATREVARDWRGTGADGAIAAADRTHRTMAGVTDDSAAIAALIEDAGAKVKVAADQLGGLIDSFQRAASALGPTLFTPQGVAMILPVALEHIARGMQIVGRTQAELQSDTDRMMALARTTTPAEVGGLSTGPAKGGIPITLPDGSIAYAPDQRAATAVRAALSQQGVPYVWGGTTPDGFDCSGFTQWSYRQAGVELPRLAQDQDTAGYPVSQGDLRPGDLAVWDGHVAMYVGNDQLVEAGSPVGVSPLRTTNAGQGFQGFFRPR
>CP033972.1|AZG44884.1|1600718_1601045_+|hypothetical-protein
MTEVTANPHALDAYARGQQSAAGQIRAQVAHQRGDIGALTTTFGVIGADFLSATAYVLDGRARTLDTVAQRHADQDAGTRSAARAYVDADDVNAARMPSAGPDRELRL
>CP033972.1|AZG44883.1|1600045_1600669_-|Uracil-phosphoribosyltransferase
MQVQIVDHPLAAARLTTMRDKATDNARFRAALSDLTQMLIYEALSQAPSESFPIETPLVGCEGTRLATPPLLVPVLRAGLGMVEQAHAMVPEAHVGFVGIARDEATAKPVPYLESLPDDLSGLPVFVLDPMLATGGSMLHTIELLVARNADDITAVCVVAAPEGVAALENSAHPVRLVVAAVDEGLDDVAYIVPGLGDAGDRQFGPR
>CP033972.1|AZG44882.1|1599214_1600033_+|putative-ABC-transporter-ATP-binding-protein-YlmA
MDGLATVIVVHSISDPILDAANIDVVRNGRPLLHDVSLRVEPGEHWALLGPNGAGKSTLMTILGARGHPTTGTVDVLGKRLGRVDMRELRTHIGHVDPRWRIDLPLTAHEVVLTGLTNTPELDRRHVYTEAEHRHADDLLALLGMTSRRDSVWPVMSQGERGRTLIARALMPRPDLLLLDEPATGLDLAAREKLLSGIDQLRSEVPGLASVLVTHHLEDLPTSTSHAMLLRDGEVIAAGIVDEALTSSTISSCFDHDVVVRRADGRWAAVAA
>CP033972.1|AZG44881.1|1597576_1599208_+|putative-phosphomannomutase
MSTIDPDDWIAADPDPGTRAELSRLGPDALAERFTDTLHFGTAGLRGPVRAGPNGMNVAVVTRTTWALGRFLLGHGHEGATVVVGRDARHGSAAFATAAAQVLTAQGFDVVTLAGPGPTPLVAFACRDLGAACAITVTASHNPPDDNGYKVYLAGGAQLIPPADQEIEDLIATAPAANTIARQHVSPDSRAQMNTARYLDRLSARFGSVHRSPVRIALTAMHGVGGALALRALRRAGFADIHVVAEQFAPDPDFPTVRFPNPEEPGAADRVLALARRIDADLAIALDPDADRCAIGARVHGGWRMLTGDETGALLGSQLLSTTELAAPIVANTIVSGSLLPAVARAAGVRHVRTLTGFKWLVRAGEPLLYAYEEAIGHCVDPVGVRDKDGIGAAVVAAKLTHELIGTRSDLSGALDDLARRHGVHVTTQRSIRLTDPAEITELMTRLRTAPPRSLAGVPVRSEDFAARTDALRTDAVELTGTATDGTSLRVMARPSGTEPKLKYYLEVVAAPHRDHRGDDLAGVGAELHDLAARIAAELPPGA
>CP033972.1|AZG44880.1|1596770_1597574_+|Purine-nucleoside-phosphorylase
MDPTADADAAAVAAAATIAAETDCSAHDVAVVLGSGWAPAAAAFGAPIASVPMSSLPGFTPPAAAGHGGVVHSVHIGDRRVLILLGRIHAYEGHDLARVVHPVRTAAAAGAHTIVLTNAAGGLRDDMSVGQPVLISDHLNLTARSPLVGARFVDLVDAYSPRLREIARRSDASLAEGVYAGLPGPHYETPAEIRMLRTLGADLVGMSTVHETIAARAAGMNVLGMSLVTNLAAGMTGEPLSHNEVLEVGNASATRMGELLASIVAEL
>CP033972.1|AZG44879.1|1596036_1596735_-|Carnitinyl-CoA-dehydratase
MPFLSSVGDVTELYLGTEGVELDEANPDNRFRLEWIDAVAGLLDRVASEPSKPLVITATGKFFTNGLDVDYVAANASGLPRYLDRVHELYVKLLTLPVPTVAAVNGHAFGAGAMLAVCADVRVMRTERGFWSLPEAALGMPFTRGMSSLIRTRLTDAAATEAMLTSRRYGAADAVAAGIMEEAVEVDGLLDRAREIAAERAPLCGPNLGLIKRGLRQPLIDDLQTTTPPTVL
>CP033972.1|AZG44878.1|1594830_1596024_-|putative-hydrolase-YxeP
MAVGERGIHTVVPRDVIGAWWAAHGSDVVGWRRRIHALPELSRQEVNTTELVMAELTAAGLTPRRLPLGTGVVCDIGSGDQPRIALRADMDALPITEHTGLPFSSTVEGVSHACGHDAHTAILIGVAHLLASLDELPVGVRLIFQPAEEVMPGGALDAVAAGVMTGVSRIFALHCDPKLPVGSVGLRAGALTSAADHIDLQLHSAGGHTSRPHLTGDLVYAMGTVITGLPGILSRRLDPRSGTVMVWGAAHAGNAPNAIPQEGRLRGTVRTGDHDTWGELEPLIRSVIGELLAPLGVRYDLSYFRGVPPVVNDEPAVEVMRDAVAAVGPNAVADTPQSPGGEDFSWYLEHVPGAMGRLGVWDGISPRVDLHQPNFDIDERALEVGVRTLAGIALAGA
>CP033972.1|AZG44877.1|1594433_1594817_+|hypothetical-protein
MASDLRGGDIGWEGSLATVTEDPDNPDAKVFIVLYDVTAEDEENLDRWEGSELGIHVKLRARVETADGPVLAWLYVLDAYEGGLPSARYLGVMAEAAEIAGAPAEYVQQLRLRESRNVGPGPGPIEP
>CP033972.1|AZG44887.1|1603592_1604732_-|Adenosine-deaminase
MTPVDSTPPTGRPLDLPNISLAPKVLLHDHLDGGLRPATVLELAREVEYADLPAADAESLGTWFRDAADSGSLERYLETFAHTVAVMQTPSALARVARECVEDLAADGVVYAEVRYAPEQHLERGMPLDEVVEAVLAGFAEGEAQAAAAGRPIMVRCLVTAMRHAARSREIAELAVRYRDAGVVGFDIAGAEAGHPPTRHLDAFEFMRANNAHFTIHAGEAFGLPSIHEAIAFCGTDRLGHGVRVIDDITLPEGADLAAESFEGAELGQIANIVRDKRIPLELCPSSNVQTGAVNSIAEHPFNVLARLRFRVTVNTDNRLMSDTTMSKEFYRLAQQFGYGWADFERFTVNAMKSAFIHFDERLALIDDVIKPGYAVLLG
>CP033972.1|AZG44888.1|1604728_1606099_-|Thymidine-phosphorylase
MSAADRADAAGDPARVREVIDTISVIWTKRDGGELSDAQIRWIVDRYARSGSGSGDVVAEEQMSALLMAILLRGMSRREIATWTQAMIDSGRRMDFSGLRRDGRPMVTVDKHSTGGVGDKITLPLAPLVASFGVAVPQLSGRGLGHTGGTLDKLESIPGWRAEVGSADMAAQLERVGAVVCAAGGDLAPADRRLYALRDVTGTVESIPLLASSIMSKKIAEGTGALVLDVKFGSGAFLKEEAQSRELAETMVWLGESAGVRTRALLTDMSTPLGLTAGNALEVAESLEVLAGGGPDDVVELTLALAREMLDAAGMPDADPAEHLAGGAAMDTWRAMIAAQGGDPDAPLPRARHTETIAATQGGVITEMDAMAVGVAAWRLGAGRAVPGQAVQAEAGITLHAKPGDRVRAGEPLFTLHTQTPDRFDAARAALDDAVSVGDDPPQRTPLVIDRVTVGS
>CP033972.1|AZG44889.1|1606095_1606497_-|Cytidine-deaminase
MTADIDWNVLRDNAKSMIARAYAPYSGFGVGAAGITDDGRIVLGCNVENVSYGLGICAEVALVAHLVGTGSRRLVAVSVCDARGEVLMPCGRCRQVLLEHGGAGLAVDHRGGPTTLGHLLPDAFGPDDLAAGR
>CP033972.1|AZG44890.1|1606721_1607129_+|Succinate-dehydrogenase-2-membrane-subunit-SdhC
MSTPTEVAPEPVRKRSLYRGDPGMWSWVLHRITGVTIFFFLFVHVLDTAVIRIDPNKYSEVIETYKTPLIGLMEIALVACVLYHAFNGVRIILIDFWSKGPKYQRQMLWVIVGIFVIVFGAAAIRLLQILITHSF
>CP033972.1|AZG44891.1|1607139_1607598_+|hypothetical-protein
MTASQATPGAAKTLGTQYDRPASLDNPRSPRMRKGGNFEKYAWLFMRFSGLALIILTIGHMFIMLAWDDGVHRIDASFVAARWREPFWQVWDLTMLWLAQLHGGNGVRTVIADYSRKDSTRFWLNVLLGISMILVLVLGSYALLTFDVNSVG
>CP033972.1|AZG44892.1|1607615_1609370_+|Succinate-dehydrogenase-flavoprotein-subunit
MQEHRYDVVIVGAGGAGMRAAIESAPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLADQDAVEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKSPVRRACYAADRTGHMILQTLYQNCVKHDVEFFNEFYALDICLGENAEGETVATGVVAYELSTGEIHVFHAKSIVFATGGSGRMYKTTSNAHTLTGDGMGIIFRKGLPLEDMEFHQFHPTGLAGLGILISEAVRGEGGILRNADGERFMERYAPTIKDLAPRDIVARSMVLEVLEGRGAGPNKDYVYIDVTHLGEDVLNEKLPDITEFARTYLGVDPVTEYVPVYPTCHYVMGGIPTNIEGQVLKDNDTVVHGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYANSADFVELPENPTDLVDNWLELMLSDHGHERVADIRTELQVTMDNNASVFRTEETLKQALTDVHALKERYAHVRVHDKGKRFNSDLLEAIELGFLLEMAEVTVVGALNRKESRGGHAREDYPDRDDVNYMRHTMAYKKGTDLLSDIELDYKPVVQTRYEPMERKY
>CP033972.1|AZG44893.1|1609369_1610173_+|Succinate-dehydrogenase-iron-sulfur-subunit
MTAIMENPAPASDEPPLPPVPDEATMVTLKIFRFNPENPDAQGFESFRVPALPTDRLLNLLLYVKGYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKLLMKDMLPARKGDGDKGKEITITIEPIKGLPVEKDLVVDMEPFFDAYRAIKPFLITSGNEPTRERIQSQHDRARFDDTTKCILCACCTTSCPVFWNEGSYFGPAAIVNAHRFIFDSRDEAAIERLDILNDVDGVWRCRTTFNCTDACPRGIQVTQAIQEVKRALMFSR
>CP033972.1|AZG44894.1|1610315_1610735_+|hypothetical-protein
MIMTRTRFVIVGLVLTVILGGLLASGHGASPADASPRYPGNGDRITVVLTSDRQYNSAVSWYDSHNRMRRQSDVPLTRFDRRTRLWTGSMVYTSRVRHQKIDTLFQSNGRFARCAVWVNKTKVRDTTVRSARYATTYCR
>CP033972.1|AZG44895.1|1610850_1612356_+|Putrescine-importer-PuuP
MSETAHAEIHAGEKGLRAGSIGLLGNVIIGLSAVAPAYSLAATLGYVVAAVHTKSPAMFVIAFIPMLLVAFAYRELSRDTPDCGTTFTWGTKAFGPWIGWIGGWGLAVSAIIVLANVAEIAAVYLLMFLGLDSWAENLWIKVLLGCFFIALMTWISIRGIVISERIQAVLMFIQFAVLILASVIALVKVGFGTAGDQAVTPEIGWLWPGGLSQSEIAAAVILCIFIYWGWDACLAIGEETKDPEKTPGRAAVITCLILVATYVLVAYAVQAFSGFGDTGIGLNNPENTGDVLTVLGEPVAGGFMAAALLLTVSVSALSSTQSTILPTARGSLSMAVYKALPDRFASIHPRYMTPAFGTAVMGGSALTFYLVLSLLSQDTLGDSIASLGLAVAFYYGITAFACTWYFRRTLFQSARNFFMRGLFPLLGGLAMTWAFVKSAIDMIAPDYGSTSVGGIGGVFILGVGMLVLGIPLMLACFAHNSSFFKGETLNADTEVKVPDVF
>CP033972.1|AZG44896.1|1612345_1613278_+|Universal-stress-protein
MSSEPASPAPRRSARPHTPHSSARPRPRLAVGYLATPSGADGVTLAVALARATGAAIDLICVVHPVEYDGHPGLDEYRERLENQAAQWLLDGAAAIPDDIETRTIVTVDDSFADGLVTMAQQSGAAMIVVGGTGDGLVRRHSLGTVSTALVHSSPLPVALAPRGYAERTEARFDSVTVAVSSKPGRSDPLPFAVALAEQGGLDLRLLSLVSIDAPFDDETPRAARERQIGVAEKLLADTRATVPDELDVDVLVADGATLDEALDNLPWDDGDIVAVGSGHLGAANRVFLGSTAARILRWTTAPVVVVPRP

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Crispr_ID: CP033972_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033972_4

2094443-2094587

Orphan

Consensus_repeat	Method
CCGCTGGTCGAGTAGTCGCGAACGAAGTGAGTGACGAATCGAGACCACACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033972_4

>merge|CP033972|4|2094443-2094587|CRISPRCasFinder
CCGCTGGTCGAGTAGTCGCGAACGAAGTGAGTGACGAATCGAGACCACACCCGTGAAACGATCGCCGGCCACCATCGACAGCATCGCGCACCCACCGCTGGTCGAGTAGTCGCGAACGAAGTGAGTAACGAATCGAGACCACACC

>CP033972|4|4|2094443-2094587|CRISPRCasFinder
CCGCTGGTCGAGTAGTCGCGAACGAAGTGAGTGACGAATCGAGACCACACC	CGTGAAACGATCGCCGGCCACCATCGACAGCATCGCGCACCCA
CCGCTGGTCGAGTAGTCGCGAACGAAGTGAGTAACGAATCGAGACCACACC

Protein	Signature genes	Signature genes Name	Protein_function
CP033972.1\|AZG45324.1\|2088334_2091130_+\|Benzoate-1,2-dioxygenase-electron-transfer-component	unknown	unknown	gnl\|CDD\|183772
CP033972.1\|AZG45336.1\|2102612_2104301_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238733
CP033972.1\|AZG45320.1\|2083924_2085031_-\|L-Ala-D/L-Glu-epimerase	unknown	unknown	gnl\|CDD\|239431
CP033972.1\|AZG45322.1\|2086216_2087572_+\|2-halobenzoate-1,2-dioxygenase-large-subunit	unknown	unknown	gnl\|CDD\|132273
CP033972.1\|AZG45318.1\|2082703_2083579_-\|Chlorocatechol-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|274133
CP033972.1\|AZG45328.1\|2095068_2095725_-\|putative-succinyl-CoA:3-ketoacid-coenzyme-A-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
CP033972.1\|AZG45323.1\|2087773_2088322_+\|2-halobenzoate-1,2-dioxygenase-small-subunit	unknown	unknown	gnl\|CDD\|132276
CP033972.1\|AZG45333.1\|2099505_2101164_-\|NAD(P)H-flavin-reductase	unknown	unknown	gnl\|CDD\|99778
CP033972.1\|AZG45319.1\|2083634_2083919_-\|Muconolactone-Delta-isomerase	unknown	unknown	gnl\|CDD\|213786
CP033972.1\|AZG45327.1\|2094635_2094923_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198403
CP033972.1\|AZG45330.1\|2096529_2097300_-\|3-oxoadipate-enol-lactonase-2	unknown	unknown	gnl\|CDD\|131480
CP033972.1\|AZG45332.1\|2098593_2099490_+\|HTH-type-transcriptional-regulator-BenM	unknown	unknown	gnl\|CDD\|182183
CP033972.1\|AZG45329.1\|2095735_2096533_-\|putative-succinyl-CoA:3-ketoacid-coenzyme-A-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
CP033972.1\|AZG45317.1\|2081715_2082633_+\|F420-dependent-hydroxymycolic-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|274680
CP033972.1\|AZG45334.1\|2101160_2102042_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|376782
CP033972.1\|AZG45325.1\|2091358_2091565_+\|Cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP033972.1\|AZG45335.1\|2102049_2102520_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226484
CP033972.1\|AZG45326.1\|2091671_2094335_+\|Putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP033972.1\|AZG45331.1\|2097296_2098520_-\|Beta-ketothiolase-BktB	unknown	unknown	gnl\|CDD\|235741
CP033972.1\|AZG45321.1\|2085027_2085984_-\|HTH-type-transcriptional-regulator-GltC	unknown	unknown	gnl\|CDD\|182183

Protein	Function_ID	Function_description	E-value
CP033972.1\|AZG45324.1\|2088334_2091130_+\|Benzoate-1,2-dioxygenase-electron-transfer-component	gnl\|CDD\|183772	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional.	2.02395e-144
CP033972.1\|AZG45336.1\|2102612_2104301_-\|hypothetical-protein	gnl\|CDD\|238733	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the members of this subgroup. All members of this subgroup however have a conserved MIDAS motif. .	3.03728e-21
CP033972.1\|AZG45320.1\|2083924_2085031_-\|L-Ala-D/L-Glu-epimerase	gnl\|CDD\|239431	cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.	9.52425e-102
CP033972.1\|AZG45322.1\|2086216_2087572_+\|2-halobenzoate-1,2-dioxygenase-large-subunit	gnl\|CDD\|132273	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13). [Energy metabolism, Other].	0
CP033972.1\|AZG45318.1\|2082703_2083579_-\|Chlorocatechol-1,2-dioxygenase	gnl\|CDD\|274133	TIGR02438, catechol_12-dioxygenase, catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB\|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.	4.30959e-163
CP033972.1\|AZG45328.1\|2095068_2095725_-\|putative-succinyl-CoA:3-ketoacid-coenzyme-A-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	6.20112e-114
CP033972.1\|AZG45323.1\|2087773_2088322_+\|2-halobenzoate-1,2-dioxygenase-small-subunit	gnl\|CDD\|132276	TIGR03232, benzo_1_2_benB, benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).	6.36575e-92
CP033972.1\|AZG45333.1\|2099505_2101164_-\|NAD(P)H-flavin-reductase	gnl\|CDD\|99778	cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.04419e-25
CP033972.1\|AZG45319.1\|2083634_2083919_-\|Muconolactone-Delta-isomerase	gnl\|CDD\|213786	TIGR03221, muco_delta, muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol. [Energy metabolism, Other].	1.08888e-54
CP033972.1\|AZG45327.1\|2094635_2094923_+\|hypothetical-protein	gnl\|CDD\|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	1.6676e-30
CP033972.1\|AZG45330.1\|2096529_2097300_-\|3-oxoadipate-enol-lactonase-2	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	5.79202e-93
CP033972.1\|AZG45332.1\|2098593_2099490_+\|HTH-type-transcriptional-regulator-BenM	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	1.88457e-55
CP033972.1\|AZG45329.1\|2095735_2096533_-\|putative-succinyl-CoA:3-ketoacid-coenzyme-A-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	2.99871e-92
CP033972.1\|AZG45317.1\|2081715_2082633_+\|F420-dependent-hydroxymycolic-acid-dehydrogenase	gnl\|CDD\|274680	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity].	5.26791e-38
CP033972.1\|AZG45334.1\|2101160_2102042_-\|FAD:protein-FMN-transferase	gnl\|CDD\|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	2.34921e-34
CP033972.1\|AZG45325.1\|2091358_2091565_+\|Cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	9.48524e-33
CP033972.1\|AZG45335.1\|2102049_2102520_-\|hypothetical-protein	gnl\|CDD\|226484	COG3976, COG3976, Uncharacterized protein conserved in bacteria [Function unknown].	0.0038696
CP033972.1\|AZG45326.1\|2091671_2094335_+\|Putative-HTH-type-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	4.09547e-18
CP033972.1\|AZG45331.1\|2097296_2098520_-\|Beta-ketothiolase-BktB	gnl\|CDD\|235741	PRK06205, PRK06205, acetyl-CoA C-acetyltransferase.	0
CP033972.1\|AZG45321.1\|2085027_2085984_-\|HTH-type-transcriptional-regulator-GltC	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	3.86432e-50

>CP033972.1|AZG45326.1|2091671_2094335_+|Putative-HTH-type-transcriptional-regulator
MLIVAECVGRDREIDELLTRADTTTGPEFVVVRGETGIGKTAVLRRLTERHRERQGAQRTLWAQAAAWEQHTAGGILHQLLQSAGPTDPTVDAATLIDRLDDDDPSIIVIDDAEHADPESLQSLLSVTRTHRSRRVLVVAAMTAPGPPISGLITDEVRLDGLSTAAVADLAAKRGLVLHPGMVDALCRHTDGNPRDILALLDEVPTRVWSSSGQALPAPAHIVDHVRGRLQDCTPDARALIEALAVLDAIEPLDTAVGLAGLDDPLTAIDAAVDSGLVADPAGLGPAESQPRLASSLTRSAVLEVMGMRSVGDVHRRAAEIVTDPARRLHHRVAATPTSDPALADDLDGLARRRGADGAWAEAAGLFRQSGRLTAEPLLRDTRVTLAVDALLAAGDCIGAGALVPLVESLRETPLRNATLAYLAILRGRSAEAAVRLDRAWSIVNFDRDPDIAALIAQRFVLHNLVRCQGTELVEWADRAIAMAGSHSPAGVEAAVIRGLGLAWSGRPTEATAEYAALAERIRFGAQAQRATMGRGWLQLGLDDVGAARSNLETAVSMANLGGSTRITLWALGWLARTQFLTGDWEPALRTVEQGRALARASGIELASPLLNWTAAAVHSLRGDWDQAELVVQQAATTAGDYEIMRIPEMLARAQIAEAAADYGKVRRTLEPLVLMADEVPALAEPGWWPWVDVLANALVIDGQLDAADQLLRPYEERAAERGHRSASARLKYSRGRYLGAIGDIHQARRTFDEALELLDGLPLRYDLARVNFAYGQTLRRAGKRRAADAIIGTAREIYLSLGATTYVERCERELKAGGLNATRGDRDTVGLTPQEESVTALVARGLSNREVAAELFISPKTVQYHLTRIYAKLGIRSRSELAAARR
>CP033972.1|AZG45325.1|2091358_2091565_+|Cold-shock-protein
MAQGTVKWFNSEKGFGFIAPDDSTDGDVFVHYSAIQGGGYRSLEEQQRVTFEVEQGPKGPQATTVTVL
>CP033972.1|AZG45324.1|2088334_2091130_+|Benzoate-1,2-dioxygenase-electron-transfer-component
MTVTTDRDPAASTGADARTHQVALAFEDGVTRFITCREDQTVADASYRQRINIPLDCRDGACGTCKALCETGDYDGGSYIEDALTDDESDAGYALPCCMKPKSDLVLQISATSDIAKTQASSFSGTVVDLDRLSESTIRVGIEIPNRGDLAFLPGQYVNFAVPGTDDGDGGLLSRSYSFANGPHEERLVFLVKLTPGGAMSTYLTERATRGDTITFTGPHGSFFLREATRPVLLLAGGTGLAPILAMLRKLHDDSSRRKVHLIYGVSTDTDLVALDEIEYFAQELPGFTWDHCVSDPASVAVNKGYVMSLIEPGHLYDGDVAIYLCGPPPMVESVRKHVAEAGIEPTGFYYEKFALAVPAATGAVTTDAPPAANEPAISVSDEEVIPSADARAIAGQITLPRIEIDPWPESPATTPDDDTRLRIGGQQMWTGSGAGADLDPDEGVLAPVPARGIAGQEVFAPADIVALHAPEPTAAVVAGSTTSTASPAEPYSAVAQPVTEPPTVTPEGYQIGEEHPEIHESDALFEARAALELGALELTFGRLTSRQLAGYRLLAETTLPFVEDDRFVDAAEYTETNANFHDYLFTLTRNDHLLSAYQALGVKGRMGEVLRNATWCHPLCARDHVDIVAAFESGDRDGARALITAHADRSKQTMRRAMADEIATQRPRFITPGRFAGKVVVVTGAAQGIGAQTARRIGAEGGKLVLADRSELVGELADELDGTGAGAIAAIADLERYEGAASVVQAAVERYGRIDVLINNVGGAINFKPFTEFSDQEIRAEIDRSLMTTLYACRAALPSMTERGAGVIVNVSSAATRGIHRIPYSAAKGGINAITASLAMEYADAGIRVVATAPGGTEAPARRISRGTPEATTALEQGWFQAHIDQTVSSALLKRYGTLDEQAAAICFLASDEATYITGTVLPVAGGDPG
>CP033972.1|AZG45323.1|2087773_2088322_+|2-halobenzoate-1,2-dioxygenase-small-subunit
MTTTPTEATPATSPATSPDKLITQNMIEQFLYREARYLDDREFERWLECYADDVVYWMPSWDDRDRLVENPQREISLIYYGNKGGLEDRVFRIRTERSSATSLPEPRTSHNISNVEVIERRGDLVDIRFNWHTMYFRYNTVDPYYGTSFYTIDFSGEQPLIRRKTIVLKNDYIHHVVDIYHF
>CP033972.1|AZG45322.1|2086216_2087572_+|2-halobenzoate-1,2-dioxygenase-large-subunit
MTASITDNMQHVHSVLADAVVDDRDAGIYRANRRIFTDEDIFELEMKHIFEGNWIYLAHESQVPNPGDYFTTYIGRQPVMITRDKNGELHCLINACAHRGAMICRRKTDNRMTLTCPFHGWTFRNDGTLLKVKDPDGAGYPDTFDVDGSHNLTKVARFDNYRGFLFGSLNADVQSLDAHLGDTRTIIDMLVDQSPEGLEVVRGASTYTYDGNWKVQAENGADGYHVTATHWNYAATTSRRSTGESKNDTKALDAGGWGKSGGGYWSYPNGHLCLWTWAANPQDRPLWDKMDELKEAFGDAKGEFMVKGSRNLCLYPNVYLMDQFSTQIRHFRPIAPDKTEVTIYCIAPKGESDAARSHRIRQYEDFFNASGMATPDDLEEFRSCQLTFRAQAAPWNDMSRGAEHWLTGPDPVAETLGMTGVISAGVKNEDEGLYPVQHGYWLETMRKAAGL
>CP033972.1|AZG45321.1|2085027_2085984_-|HTH-type-transcriptional-regulator-GltC
MELRHLRYFSAVAQTCHFGQAAALLHVAQPALSYAIRQLESELDVTLFTRTTRQVALTPAGDYLKIEAERILAGVDDAVDGVRRIAAGRSGLVRLGLTGIAAFSHLPRIARVIKRELPDVDLAIQSDMLTPVQCESLRTMALDLGVLRPPVVGEAISMRTIDIEQMVLAVSVDHRLAVEPVVSIEDLRNESFVMYDSRDSAVNDAAIRSCHRAGFVPQRAHEAPGTAVLLALVAAGLGVAVLPASVRSLPLEGLIIRDLVDGGTVELALAWRAGQDNPVVEAVADVIADAFALESSAGRASVPDLHSPIIAAHLRENP
>CP033972.1|AZG45320.1|2083924_2085031_-|L-Ala-D/L-Glu-epimerase
MKITAVEAIPFAIPYSKPLKFASGEVHAAEHVLVRVHTDDGVVGVAEAPPRPFTYGETQDGIIAVVTKVFAPQVIGLTVLEREIVVSRLARTIGNPTAKSALDMAIWDALGKTLELPVSDLLGGYTDRMRVSHMLGFADPATMVAEAERMRDTYGITTFKVKVGRRPVTLDTAVVRALRERFGDEIDLYVDGNRGWTASESARAMKEMADLGLLFAEELCPADDVMSRRWLVGQVDVPFIADESVPTAADVTREVLGGSATAISIKTARTGFTASRRVHHLAEGLGLEVVIGNQIDGQVGTACALAFGAAYESTSRNAGELSNFLDMTDDLLAEPLQIRGGYLHRSSAAGIGFEIDPDKLAHYRLDRS
>CP033972.1|AZG45319.1|2083634_2083919_-|Muconolactone-Delta-isomerase
MLFHVRMDVDIPTDLDPDTRAEIVAREKAYSQDLQRSGKWPHIWRIVGEYSNFSVFDVEDNDELHGILSGLPLFAYMTIKVTPLATHPSDIAAG
>CP033972.1|AZG45318.1|2082703_2083579_-|Chlorocatechol-1,2-dioxygenase
MTDTSFDTEVTAKAAESGANASARFRERIASSGTRAGVVDTERVNYLASKVIKGLNDIILDDKVSYEEYNALKAWLIKVGETGEWPLFLDVWLEHSVEEVANEHREGSKGTIEGPYYIEGAPELSWNGTIPMRDNEPGTPLLFEGQVRAVDGTPLSGAKLELWHADDLGFYSQFAPGLPEWNLRGTWTANEDGRFEIHTLRPAPYMIPTDGACGQLIEAAGWHAWRPAHLHFKVSAPGHELITTQLYFPGDPHNEDDIASAVKPELLLDPQDSADGNGFVTHYDFVLDPEH
>CP033972.1|AZG45317.1|2081715_2082633_+|F420-dependent-hydroxymycolic-acid-dehydrogenase
MEYGAHLPLIDLDGRSWDVHRLASYARTAQRLEFTTLAANDHLAFRRPWLDGIVALASVIDASGDLDLATTVALPVIRGPAALAKSAAALDVLSGGRFVLGVGAGSSVTDYALAGVDIDERWPRFDEAVRVLRSQLGRDDGPAPHGRFYPEPTPLAPAPSRPGRPPLWIASWGSPAGLRRVARLGDGWLASAYNTTPDRFTRSREMLRADRSGDRDLTCVIATMWTQVTDEARDRSQWLARLATLLGRDERDLARAVLVGSPEHCAELLREYAEAGADKVLIWPLADHERQLEHFVREVVPLVAG
>CP033972.1|AZG45327.1|2094635_2094923_+|hypothetical-protein
MAAYLYILECADGSFYVGSTRDIDNRLEQHNLGRGARYTSGRLPVRLVYCLECESVAEAYALEKRVQGWSRAKRIALISGRLEALPALSRKRWPS
>CP033972.1|AZG45328.1|2095068_2095725_-|putative-succinyl-CoA:3-ketoacid-coenzyme-A-transferase-subunit-B
MTWTRTEMAARASLELRRGDYVNLGIGLPTLIPDHLPDDSGITLHAENGILGVGPFPYNDEVDPDLINAGKQTVSVLPGASYFDSATSFAMIRGGHVDVAVLGGMQVAGNGDLANWMVPGAMVKGIGGAMDLVNGAGQVIVLMEHTTKKGDPKLVAECSLPLTGLSVVSRVITDLGVFDVNGSGFDVLELATDVDLSIVEAKTGAPVVDRTSAPTPAR
>CP033972.1|AZG45329.1|2095735_2096533_-|putative-succinyl-CoA:3-ketoacid-coenzyme-A-transferase-subunit-A
MSIDKLAGSAAEAVADIPDGASLAVGGFGLAGIPWFLIEALLDQGAGNLTIVSNNCGVDGAGLGLLLEARKIDKVIASYIGENKEFGRQFLAGEVTVELTPQGTLAERMRAGGSGIGAFFTPTGVGTLVADGGLPWRYHPDGSVALASPPKEVRTFNDTPMVLEEAIVTDYALIRAAVVDKAGNCMFHAAARNFNPPAAMSGRTTIVEAERVVEVGELAPDAIHLPGIFVKRIVELTPEQAARKEIEQRTTRPRPGQLDAEPAHS
>CP033972.1|AZG45330.1|2096529_2097300_-|3-oxoadipate-enol-lactonase-2
MSAVEVEAVVTGRPDGAAVVLSNSLGSTYRMWDAQLPALEDRFRVIRYNTRGHGDSPVPQGPYTIDDLADDVIALLDRLGVERAHIVGLSLGGMTAMRLGIRDPGRVDKLALLCTGAQLTPASAWTDRAATVRADGSAAVAEAVVQRWFTAEHLAAEKDSRIYHEQMVASTPAEGYAGCCEAIAVMDQRDDLSSITAPTLVIAGADDPATPPAKLAEIAEAVKDARLLVVPHSAHLANAEQPEIITPALIEHLEQS
>CP033972.1|AZG45331.1|2097296_2098520_-|Beta-ketothiolase-BktB
MSSGSDVVICSPLRTPVGRMGGALASLTVTDLATGLLRELASRTGLGDGDVDDVILGQGYANGESPAIGRIAALDSGLGVGVPGMQVDRRCGSGLQAILNGASQVATGGARLVVAGGAESMSNVEHYALGLRTGVRQGGVELMDRLDRGRLTAGGDSHPVPGGMIETAENLRARYGISRAQQDELAVRSHQRAIAAHEAGRFADELVSVTVPGRRGKPDVVVDRDEHPRADATLESMAGLRPIRLKVDPESTVTAGNASGQNDGAAMCVVTTRDEAVRRGLDPMLALKSWAVTGCEPEVMGIGPVGATAAALDRAGLTLDEIDLIELNEAFAAQALAVLAEWKVDADDDRLNPNGSGISLGHPIGATGARILATAAYEARRRDARHVLETMCIGGGQGLAAIFEVVR
>CP033972.1|AZG45332.1|2098593_2099490_+|HTH-type-transcriptional-regulator-BenM
MMELRHLRYFRAVAEELHFGRAAERLHIAQPPLSQQIRHLEEELGVTLFVRSTRRVELTPAGQAYLERVEAILDAVDVAGLQAQRVAEGRQGTLAIGCVGSATYSLLPRLVRALRQDLPELDVSVRGEMLAPAQLSALISGQIDLALLRPPVGGAEVVVETIRRDRLFVALPEGDQRCAGESVDIDELRDAEFVTHAGQGRSVMNGILASICAAAGFVPQIRHEVAETSTLVTLVAAGLGVAIVPEPTAALGVAGVRYLPLIPGAPTVELAVARPAGVPSPMIEQVLTVLRRVAADDH
>CP033972.1|AZG45333.1|2099505_2101164_-|NAD(P)H-flavin-reductase
MIRLIPPWLTAHRAVLLALGALAIAAFVVSASDSEFAYRPDELALSLLISVVVSGAVTYLCAAVVRVPPGSDSWLITALILFFVLPGASDSAAAVTVAVGAAAAACSKYVLAWRRRLVINPAVAGAVVVYALAYAEVGSIAYPVWWVAAEPLLYPMVVIGALLVTALREWRLVAVFLAASLVTVGVLELTEGGQSLQFWYTSSPTFFVAAVMLPEPLTSPTVRVHRTIYGALVGVLMYWQVSIPISDAFTLEFVPEIALLVGSVYAFAVRLFTRTSADRRPRLDLVGPAPAGTESDTSPAEGVKAEGVKAEGVKAEGVKAEGAKSIAANTYELVVDGRVPLDFVPGQWAMLSAPEWSRPLWRSSRRVFSFAEAPGVVPGRFAFTVSGEVSPVKAGLISGSTGRVFLDSSGGDFVLPRHRSDRPIVLLASGIGITPFRSMLRSALAEGRTLDRFALIHVVRSADRMVYQDVLDAAEAAGADVQVIESSSLADGFDPRSLGLALDSTVVLGGAAHYYCSGNPRFVQTTAHAIRRFDPRTRRAFWRVHADAFLGY
>CP033972.1|AZG45334.1|2101160_2102042_-|FAD:protein-FMN-transferase
MSRLAHDWRFDALGTEWEISTPEPLPHTVTRAVRTELDRIDRVWSRFRSDSTVAEIARRAGRYPIAHSDQPLVDWYRRLYDLTGGAVTPMVGQMLSDAGYDAHYTLRPQDVVAPSPRWDDVLGCHHGELDVRTPTLLDVGAAGKGFAVDRIAAIVAEAADSYVVDGSGDMRMATSGGPLRIALEHPIDPTRAIGVITIDGGAICASAANRRAWADWHHIVNPHTASPAREVLATWVIAPDAMTADGLATALFFTPASILRPAFDFADAGFHHVTIRRNGTVEHTDVPGLELFA
>CP033972.1|AZG45335.1|2102049_2102520_-|hypothetical-protein
MSRKDPLPRAAGTAAALATIGLVAGACGSGDSADTAVDNASTAVESAAADVSEAATGASYRNGEYTATGDYVSPGGPQQVGVTVTLSNNVITALTLDTSQTKGTSKEFQGKFASGIDALVVGKNIDDLDVHKVSGSSLTSTGFNDAIDQIKTEAQA
>CP033972.1|AZG45336.1|2102612_2104301_-|hypothetical-protein
MPASGPIDTRSARRGTDDDFGFEHRKATTGRRGGLIWGLAALIVVVALVTGFVLWRTGAVGCADRTSVAVASDQAMTGALRSVAQQASDNSCFDFQVSGVAGADVPGQLTSGDKAPDLWVADSQIQARRVTTQVRRELNLVSPSIATSPTVIVGKSVPQLNSWVDVMKLTDLRTGSPIDTSTGDAPIVGALAEVDNGNLTEKELTGAMTVLAVQQNNARLANDNEGTRLNLANTSDVPVITTEQQYLLFTRTHKGSELKASVPADGTVMLDYPLVNTAGAARSDTAAEAGKALADEMASPEGLAALNEAGYRNPAGAPLPDGVGVGSVKELELKDPTQVDRAIRQWQVLGVPIRTLVVEDTSGSMDAAAGNTTRAGLLTDASMTGLKLFPNNTQIGGWSFGIDKGGDGQDWKWMSPIRRLDAPSADGGTHREELGRAVRQGLSKSQLGGGTGLYDTTLAAFKEVQNSYDPNYSNSVIIMTDGQNEDPNSISLDELLAQLKRLEDPARPVLVLTIGISEDADTDALAAIADATGGTTYVAENPADIKTVFVDAIQARVAAAGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033972_1	1.1\|490652\|26\|CP033972\|CRISPRCasFinder	490652-490677	26	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	433312-433337	3	0.885
CP033972_1	1.1\|490652\|26\|CP033972\|CRISPRCasFinder	490652-490677	26	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	491963-491988	5	0.808
CP033972_1	1.1\|490652\|26\|CP033972\|CRISPRCasFinder	490652-490677	26	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	195419-195444	5	0.808
CP033972_1	1.1\|490652\|26\|CP033972\|CRISPRCasFinder	490652-490677	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1059195-1059220	6	0.769
CP033972_1	1.1\|490652\|26\|CP033972\|CRISPRCasFinder	490652-490677	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1063875-1063900	6	0.769
CP033972_2	2.1\|1295913\|28\|CP033972\|CRISPRCasFinder	1295913-1295940	28	NZ_CP014308	Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence	779542-779569	6	0.786
CP033972_2	2.1\|1295913\|28\|CP033972\|CRISPRCasFinder	1295913-1295940	28	NZ_CP014309	Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence	55529-55556	6	0.786
CP033972_3	3.1\|1603412\|30\|CP033972\|CRISPRCasFinder	1603412-1603441	30	CP003951	Rhodococcus opacus PD630 plasmid 2, complete sequence	67535-67564	6	0.8
CP033972_2	2.1\|1295913\|28\|CP033972\|CRISPRCasFinder	1295913-1295940	28	NZ_LR134459	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence	138863-138890	7	0.75
CP033972_3	3.1\|1603412\|30\|CP033972\|CRISPRCasFinder	1603412-1603441	30	FN436268	Acaryochloris phage A-HIS1, complete genome	803-832	7	0.767
CP033972_3	3.1\|1603412\|30\|CP033972\|CRISPRCasFinder	1603412-1603441	30	KY210139	Xanthomonas phage KPhi1, complete genome	14583-14612	7	0.767
CP033972_3	3.1\|1603412\|30\|CP033972\|CRISPRCasFinder	1603412-1603441	30	MN461279	Xanthomonas virus phiXaf18, complete genome	7906-7935	7	0.767

1. spacer 1.1|490652|26|CP033972|CRISPRCasFinder matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 3, identity: 0.885

aaggcccgcaaccaccgcgttgccac	CRISPR spacer
aaggtccgcaatcaccgcgttgccag	Protospacer
****.******.*************

2. spacer 1.1|490652|26|CP033972|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 5, identity: 0.808

aaggcccgcaaccaccgcgttgccac	CRISPR spacer
cacatccgcatccaccgcgttgccac	Protospacer
 * ..***** ***************

3. spacer 1.1|490652|26|CP033972|CRISPRCasFinder matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

aaggcccgcaaccaccgcgttgccac	CRISPR spacer
ctggcccgcaaccgccgcgtcgccat	Protospacer
  ***********.******.****.

4. spacer 1.1|490652|26|CP033972|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 6, identity: 0.769

aaggcccgcaaccaccgcgttgccac	CRISPR spacer
cgcgcccgcagccaccgcgttgccca	Protospacer
 . *******.*************

5. spacer 1.1|490652|26|CP033972|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 6, identity: 0.769

aaggcccgcaaccaccgcgttgccac	CRISPR spacer
cgcgcccgcagccaccgcgttgccca	Protospacer
 . *******.*************

6. spacer 2.1|1295913|28|CP033972|CRISPRCasFinder matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

aatagcggcgcacgccacgtgacccgaa	CRISPR spacer
gggagatgcgcatgccacgtgacccgaa	Protospacer
.. **  *****.***************

7. spacer 2.1|1295913|28|CP033972|CRISPRCasFinder matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

aatagcggcgcacgccacgtgacccgaa	CRISPR spacer
gggagatgcgcatgccacgtgacccgaa	Protospacer
.. **  *****.***************

8. spacer 3.1|1603412|30|CP033972|CRISPRCasFinder matches to CP003951 (Rhodococcus opacus PD630 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.8

caacccgctgatcgagtaggttccgagcgc	CRISPR spacer
catcccgctgaacgagtaggttccgcaggt	Protospacer
** ******** ************* . *.

9. spacer 2.1|1295913|28|CP033972|CRISPRCasFinder matches to NZ_LR134459 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence) position: , mismatch: 7, identity: 0.75

aatagcggcgcacgccacgtgacccgaa	CRISPR spacer
cggtgcggcgcaggccacgtgacccgcc	Protospacer
 .  ******** *************

10. spacer 3.1|1603412|30|CP033972|CRISPRCasFinder matches to FN436268 (Acaryochloris phage A-HIS1, complete genome) position: , mismatch: 7, identity: 0.767

caacccgctgatcgagtaggttccgagcgc	CRISPR spacer
cgacccactgaccgagtaggttccgctgtc	Protospacer
*.****.****.*************    *

11. spacer 3.1|1603412|30|CP033972|CRISPRCasFinder matches to KY210139 (Xanthomonas phage KPhi1, complete genome) position: , mismatch: 7, identity: 0.767

caacccgctgatcgagtaggttccgagcgc	CRISPR spacer
ctacccgctgatcgagtatgttgcggtgcc	Protospacer
* **************** *** **.   *

12. spacer 3.1|1603412|30|CP033972|CRISPRCasFinder matches to MN461279 (Xanthomonas virus phiXaf18, complete genome) position: , mismatch: 7, identity: 0.767

caacccgctgatcgagtaggttccgagcgc	CRISPR spacer
ctacccgctgatcgagtatgttgcggtgcc	Protospacer
* **************** *** **.   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

810 : 33442

Gordonia_phage(81.82%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZG43439.1\|810_2055_-	Lysostaphin	A0A142KAY0	Gordonia_phage	1.4e-174	71.6
AZG43440.1\|2087_3680_-	hypothetical protein	A0A0U4IA58	Gordonia_phage	6.7e-158	55.4
AZG43441.1\|3676_4516_-	hypothetical protein	A0A1B3B219	Gordonia_phage	5.1e-48	42.5
AZG43442.1\|4515_8613_-	hypothetical protein	A0A1B3AZW2	Gordonia_phage	2.4e-130	31.0
AZG43443.1\|8895_9432_-	hypothetical protein	NA	NA	NA	NA
AZG43444.1\|9459_9966_-	hypothetical protein	NA	NA	NA	NA
AZG43445.1\|9968_10418_-	hypothetical protein	A0A159B6I3	Gordonia_phage	5.2e-23	42.3
AZG43446.1\|10414_10747_-	hypothetical protein	A0A159B6H7	Gordonia_phage	8.8e-20	49.1
AZG43447.1\|10757_11072_-	hypothetical protein	NA	NA	NA	NA
AZG43448.1\|11071_11491_-	hypothetical protein	A0A159B6H6	Gordonia_phage	1.1e-22	49.6
AZG43449.1\|11493_11775_-	hypothetical protein	NA	NA	NA	NA
AZG43450.1\|11852_12041_-	hypothetical protein	NA	NA	NA	NA
AZG43451.1\|12043_13075_-	hypothetical protein	G9FH86	Rhodococcus_phage	1.9e-129	69.6
AZG43452.1\|13124_13649_-	hypothetical protein	NA	NA	NA	NA
AZG43453.1\|13728_13950_+	hypothetical protein	NA	NA	NA	NA
AZG43454.1\|14347_15391_-	hypothetical protein	A0A159B6H5	Gordonia_phage	2.2e-80	49.0
AZG43455.1\|15400_17065_-	hypothetical protein	A0A162E1F1	Gordonia_phage	3.9e-164	57.8
AZG43456.1\|17045_18359_-	hypothetical protein	A0A159B6H4	Gordonia_phage	9.3e-105	46.7
AZG43457.1\|18525_19002_-	hypothetical protein	NA	NA	NA	NA
AZG43458.1\|19047_19290_-	hypothetical protein	NA	NA	NA	NA
AZG43459.1\|19595_19733_-	hypothetical protein	NA	NA	NA	NA
AZG43460.1\|19937_20609_-	hypothetical protein	A0A142K8W1	Gordonia_phage	8.2e-65	58.9
AZG43461.1\|20605_20881_-	hypothetical protein	NA	NA	NA	NA
AZG43462.1\|20877_21123_-	hypothetical protein	NA	NA	NA	NA
AZG43463.1\|21119_21491_-	hypothetical protein	A0A0K0N675	Gordonia_phage	1.6e-33	64.3
AZG43464.1\|21504_21915_-	hypothetical protein	NA	NA	NA	NA
AZG43465.1\|21914_22226_-	hypothetical protein	NA	NA	NA	NA
AZG43466.1\|22222_24709_-	hypothetical protein	A0A0K0N6F1	Gordonia_phage	4.7e-267	56.4
AZG43467.1\|24827_25166_-	hypothetical protein	A0A0A7RWT9	Mycobacterium_phage	5.3e-20	51.6
AZG43468.1\|26682_26850_-	hypothetical protein	NA	NA	NA	NA
AZG43469.1\|26846_27011_-	hypothetical protein	NA	NA	NA	NA
AZG43470.1\|27007_27439_-	hypothetical protein	A0A1C9EHS4	Gordonia_phage	4.4e-19	52.2
AZG43471.1\|27435_27801_-	hypothetical protein	A0A2H4PF41	Gordonia_phage	2.0e-17	42.9
AZG43472.1\|27797_28283_-	hypothetical protein	A0A160DD04	Gordonia_phage	3.2e-10	65.0
AZG43473.1\|28395_28521_-	hypothetical protein	NA	NA	NA	NA
AZG43474.1\|28513_28651_-	hypothetical protein	NA	NA	NA	NA
AZG43475.1\|28647_29007_-	hypothetical protein	NA	NA	NA	NA
AZG43476.1\|29083_29668_-	hypothetical protein	V5UQC8	Mycobacterium_phage	3.6e-08	33.3
AZG43477.1\|29685_30465_-	hypothetical protein	A0A0K0N652	Gordonia_phage	1.2e-64	52.4
AZG43478.1\|30464_30764_-	hypothetical protein	NA	NA	NA	NA
AZG43479.1\|30756_30879_-	hypothetical protein	NA	NA	NA	NA
AZG43480.1\|30878_31097_-	hypothetical protein	NA	NA	NA	NA
AZG43481.1\|31093_31285_-	hypothetical protein	NA	NA	NA	NA
AZG43482.1\|31281_31620_-	hypothetical protein	NA	NA	NA	NA
AZG43483.1\|31616_31835_-	hypothetical protein	NA	NA	NA	NA
AZG43484.1\|31898_32153_-	hypothetical protein	A0A1J0MDU5	Mycobacterium_phage	1.6e-08	51.5
AZG43485.1\|32374_32962_+	hypothetical protein	NA	NA	NA	NA
AZG43486.1\|33025_33442_+	hypothetical protein	A0A1B3AYW5	Gordonia_phage	6.4e-52	71.7

DBSCAN-SWA_2

5955846 : 5961770

Gordonia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZG48850.1\|5955846_5956020_+	hypothetical protein	A0A2K9VH67	Gordonia_phage	1.4e-16	74.1
AZG48851.1\|5956202_5956466_+	Toxin RelG	A0A2P1N333	Gordonia_phage	1.4e-36	88.2
AZG48852.1\|5956462_5956705_+	hypothetical protein	A0A2P1N2P2	Gordonia_phage	1.9e-32	89.7
AZG48853.1\|5956955_5958503_-	hypothetical protein	NA	NA	NA	NA
AZG48854.1\|5958499_5958784_-	hypothetical protein	A0A2P1CG77	Mycobacterium_phage	1.2e-09	37.1
AZG48855.1\|5958797_5959226_-	hypothetical protein	A0A159B6I9	Gordonia_phage	5.4e-38	62.9
AZG48856.1\|5959263_5961060_-	hypothetical protein	A0A142K914	Gordonia_phage	1.0e-98	45.7
AZG48857.1\|5961056_5961770_-	hypothetical protein	A0A142K8R6	Gordonia_phage	5.3e-70	57.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033972

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection