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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034067 Shigella sonnei strain FDAARGOS_524 chromosome, complete genome 5 crisprs DEDDh,TnsE_C,cas3,csa3,c2c9_V-U4,cas7,cas5,cas6e,cas2,DinG 0 3 24 0
CP034070 Shigella sonnei strain FDAARGOS_524 plasmid unnamed4 0 crisprs NA 0 0 0 0
CP034069 Shigella sonnei strain FDAARGOS_524 plasmid unnamed3 0 crisprs NA 0 0 0 0
CP034066 Shigella sonnei strain FDAARGOS_524 plasmid unnamed1, complete sequence 0 crisprs DEDDh 0 0 3 0
CP034068 Shigella sonnei strain FDAARGOS_524 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP034067
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034067_1 108065-108213 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034067_2 256911-257055 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034067_3 993893-994025 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034067_4 1002731-1002860 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034067_5 3453769-3453886 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP034067_3 3.1|993910|42|CP034067|PILER-CR 993910-993951 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
CP034067_3 3.2|993969|40|CP034067|PILER-CR 993969-994008 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 0 1.0
CP034067_6 6.1|4771680|40|CP034067|CRISPRCasFinder 4771680-4771719 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0

1. spacer 3.1|993910|42|CP034067|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

2. spacer 3.2|993969|40|CP034067|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

catggcgtagaaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
****************************************

3. spacer 6.1|4771680|40|CP034067|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 214131 : 302630 84 Salmonella_phage(12.82%) integrase,head,tail,terminase,transposase attL 253367:253426|attR 293888:293902
DBSCAN-SWA_2 532516 : 600058 58 Bacillus_phage(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_3 676388 : 785590 85 Acinetobacter_phage(16.67%) plate,transposase NA
DBSCAN-SWA_4 815550 : 885255 58 Shigella_phage(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 1104483 : 1142783 27 Shigella_phage(25.0%) transposase NA
DBSCAN-SWA_6 1240772 : 1309341 56 Acinetobacter_phage(21.43%) tRNA,transposase,protease NA
DBSCAN-SWA_7 1701072 : 1770510 55 Shigella_phage(18.18%) transposase NA
DBSCAN-SWA_8 1943271 : 1951663 8 Enterobacteria_phage(50.0%) transposase NA
DBSCAN-SWA_9 2030915 : 2093731 57 Escherichia_phage(30.77%) tRNA,transposase,protease NA
DBSCAN-SWA_10 2105694 : 2142685 24 Acinetobacter_phage(28.57%) transposase NA
DBSCAN-SWA_11 2315212 : 2376017 60 Staphylococcus_phage(11.11%) transposase,protease NA
DBSCAN-SWA_12 2458657 : 2533130 55 Enterobacterial_phage(10.0%) tRNA,transposase,protease NA
DBSCAN-SWA_13 2839807 : 2847748 8 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_14 2890625 : 2989809 101 Enterobacteria_phage(53.33%) head,plate,portal,tail,tRNA,holin,terminase,transposase,protease NA
DBSCAN-SWA_15 3015402 : 3073187 57 Stx2-converting_phage(33.33%) tRNA,transposase,tail NA
DBSCAN-SWA_16 3241247 : 3367977 108 Enterobacteria_phage(56.0%) capsid,head,portal,tail,tRNA,holin,terminase,lysis,transposase NA
DBSCAN-SWA_17 3595830 : 3603269 7 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_18 3737507 : 3796101 49 Shigella_phage(27.27%) transposase NA
DBSCAN-SWA_19 3850140 : 3905921 57 Escherichia_phage(25.81%) capsid,tail,holin,transposase,protease NA
DBSCAN-SWA_20 3975677 : 4084211 87 Escherichia_phage(29.27%) tRNA,transposase,protease,tail NA
DBSCAN-SWA_21 4210917 : 4216640 11 Escherichia_phage(57.14%) NA NA
DBSCAN-SWA_22 4429236 : 4490714 59 Acinetobacter_phage(25.0%) tRNA,transposase,protease,integrase attL 4473363:4473377|attR 4494528:4494542
DBSCAN-SWA_23 4530160 : 4541893 12 Enterobacteria_phage(45.45%) transposase NA
DBSCAN-SWA_24 4720750 : 4781100 52 Enterobacteria_phage(25.0%) transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP034066
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 374 : 13989 19 Salmonella_phage(93.75%) NA NA
DBSCAN-SWA_2 17877 : 51694 39 Salmonella_phage(100.0%) capsid,tail,terminase NA
DBSCAN-SWA_3 54972 : 107803 63 Salmonella_phage(80.7%) integrase,tRNA attL 101068:101083|attR 108870:108885
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage