CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034015	Shewanella livingstonensis strain LMG 19866 chromosome, complete genome	3 crisprs	csa3,PD-DExK,RT,cas3,DinG,DEDDh	1	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034015_1

1835775-1835987

Orphan

Consensus_repeat	Method
CAGAATTAATAAAGCATTATAAAAATTGATACACGCGACATTAGCTCAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034015_1

>merge|CP034015|1|1835775-1835987|CRISPRCasFinder
CAGAATTAATAAAGCATTATAAAAATTGATATACGCGACATTAGCTCAGTTGGATAGGTTGAAAGACGATACCTTTCTTTCAGAATTAATAAAGCATTATAAAAATTGATACACGCGACATTAGCTCAGTTGGATAGGTTGAAAGACGATACCTTTCTTGCAGAATTAATAAAGCATTATAAAAATTGATATACGCGACATTAGCTCAGTTGG

>CP034015|1|1|1835775-1835987|CRISPRCasFinder
CAGAATTAATAAAGCATTATAAAAATTGATATACGCGACATTAGCTCAGTTGG	ATAGGTTGAAAGACGATACCTTTCTTTCAGAATTAATAAAGCATTATAAAAATTGATACACGCGACATTAGCTCAGTTGGATAGGTTGAAAGACGATACCTTTCTTG
CAGAATTAATAAAGCATTATAAAAATTGATATACGCGACATTAGCTCAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP034015.1\|AZG72712.1\|1840993_1842652_-\|putative-pyridoxal-dependent-aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|274791
CP034015.1\|AZG72716.1\|1847088_1849176_-\|MtrB/PioB-family-decaheme-associated-outer-membrane-protein	unknown	unknown	gnl\|CDD\|371763
CP034015.1\|AZG72709.1\|1835021_1835570_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
CP034015.1\|AZG72710.1\|1837631_1838351_+\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG72708.1\|1833144_1834977_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
CP034015.1\|AZG72700.1\|1824691_1827403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224037
CP034015.1\|AZG72705.1\|1830254_1830563_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|377609
CP034015.1\|AZG72717.1\|1849188_1850178_-\|DmsE-family-decaheme-c-type-cytochrome	unknown	unknown	gnl\|CDD\|274618
CP034015.1\|AZG72718.1\|1850275_1852237_-\|OmcA/MtrC-family-decaheme-c-type-cytochrome	unknown	unknown	gnl\|CDD\|274617
CP034015.1\|AZG72703.1\|1829141_1829378_-\|DUF2789-domain-containing-protein	unknown	unknown	gnl\|CDD\|378527
CP034015.1\|AZG72719.1\|1852523_1854698_-\|OmcA/MtrC-family-decaheme-c-type-cytochrome	unknown	unknown	gnl\|CDD\|274617
CP034015.1\|AZG72715.1\|1845560_1846718_-\|CdaR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226355
CP034015.1\|AZG72711.1\|1838603_1839812_+\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG72701.1\|1827417_1828191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370804
CP034015.1\|AZG72704.1\|1829556_1830186_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP034015.1\|AZG72702.1\|1828191_1828551_-\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG72707.1\|1832455_1833100_+\|two-component-system-response-regulator-UvrY	unknown	unknown	gnl\|CDD\|236538
CP034015.1\|AZG72706.1\|1831796_1832216_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
CP034015.1\|AZG72714.1\|1844072_1845431_-\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
CP034015.1\|AZG72713.1\|1842882_1844052_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844

Protein	Function_ID	Function_description	E-value
CP034015.1\|AZG72712.1\|1840993_1842652_-\|putative-pyridoxal-dependent-aspartate-1-decarboxylase	gnl\|CDD\|274791	TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A].	0
CP034015.1\|AZG72716.1\|1847088_1849176_-\|MtrB/PioB-family-decaheme-associated-outer-membrane-protein	gnl\|CDD\|371763	pfam11854, MtrB_PioB, Putative outer membrane beta-barrel porin, MtrB/PioB. MtrB-PioB is a family of bacterial putative outer membrane porins. This family, is secreted as part of the pio (phototrophic iron oxidation) operon that has been found to couple the oxidation of ferrous iron [Fe(II)] to reductive CO2 fixation using light energy. PioABC is found in Rhodopseudomonas palustris and MtrB-PioB is likely to be a beta-barrel porin. Similar to other outer membrane porins, PioB and MtrB are predicted to have long loops protruding into the extracellular space and short turns on the periplasmic side.	0
CP034015.1\|AZG72709.1\|1835021_1835570_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	6.7332e-74
CP034015.1\|AZG72708.1\|1833144_1834977_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
CP034015.1\|AZG72706.1\|1831796_1832216_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	6.37986e-58
CP034015.1\|AZG72705.1\|1830254_1830563_+\|DUF962-domain-containing-protein	gnl\|CDD\|377609	pfam06127, DUF962, Protein of unknown function (DUF962). This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein YGL010W has been found to be non-essential for cell growth.	1.44159e-44
CP034015.1\|AZG72718.1\|1850275_1852237_-\|OmcA/MtrC-family-decaheme-c-type-cytochrome	gnl\|CDD\|274617	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport].	2.65552e-92
CP034015.1\|AZG72703.1\|1829141_1829378_-\|DUF2789-domain-containing-protein	gnl\|CDD\|378527	pfam10982, DUF2789, Protein of unknown function (DUF2789). This bacterial family of proteins has no known function.	1.44941e-30
CP034015.1\|AZG72719.1\|1852523_1854698_-\|OmcA/MtrC-family-decaheme-c-type-cytochrome	gnl\|CDD\|274617	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport].	2.14797e-109
CP034015.1\|AZG72715.1\|1845560_1846718_-\|CdaR-family-transcriptional-regulator	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	7.51167e-134
CP034015.1\|AZG72713.1\|1842882_1844052_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
CP034015.1\|AZG72701.1\|1827417_1828191_-\|hypothetical-protein	gnl\|CDD\|370804	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310). Members of this family of proteobacterial zinc ribbon proteins are thought to bind to nucleic acids, however their exact function has not as yet been defined.	2.51193e-149
CP034015.1\|AZG72704.1\|1829556_1830186_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.92299e-05
CP034015.1\|AZG72707.1\|1832455_1833100_+\|two-component-system-response-regulator-UvrY	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	4.63826e-158
CP034015.1\|AZG72700.1\|1824691_1827403_-\|hypothetical-protein	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	2.88617e-25
CP034015.1\|AZG72714.1\|1844072_1845431_-\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	7.22338e-104
CP034015.1\|AZG72717.1\|1849188_1850178_-\|DmsE-family-decaheme-c-type-cytochrome	gnl\|CDD\|274618	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family. Members of this family are small, decaheme c-type cytochromes, related DmsE of Shewanella oneidensis MR-1, which has been shown to be part of an anaerobic dimethyl sulfoxide reductase.	2.04787e-126

>CP034015.1|AZG72709.1|1835021_1835570_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPFNLPIALTLFRIALLPVFIAVFYLPYPWAPFVSAFIFWLAALTDWADGYAARKLGQLTRFGAFLDPVADKVMVSTALVLLVQQNDNVYLTLAALFMIGREIVISALREWMAEIGKRGVVAVSWIGKYKTATQMIAIIGLIWKPTPWLTDVAYGLFYIAAALTFWSMMSYISAAWKDLTAE
>CP034015.1|AZG72708.1|1833144_1834977_+|excinuclease-ABC-subunit-UvrC
MSSGFNAKSFLKNVTSAPGVYRMYDKRQQVIYVGKAKDLKKRLSSYFRTNIPNVKTQALVSHIDHIDVTVTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGPKREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLDRCSAPCVGIVSDEEYNEQVKLASLFLRGKDKLVISQLVAKMETAAIGMEYERAAQYRDQIMALRRVAEQQEVSNHKGDMDVIGVDYASGIACFHLLFIRDGKIFGSRSYYPSVPAETEIEEVLSSFLGQFYLNADSQRTIPKEVILSHYFDGITELQASIEHALDKKFELKTQVRGDRANFLRLAMTNASNAVATKLSHKNTVEQRFQLLEEALELNEPIKRMECFDISHTMGESTVASCVVFNREGPHKADYRRYNITGITGGDDYAAMEQAISRRFDKIDNNGKVPDLVFIDGGIGQLRVAQTIVDEKCVNIDHPPLLICVTKGEGRKAGLETFTVGGSEQTFEVASDSPAFHLMLHIRDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQHLGGIQEVKGASVAELTKVPGISLEMAQTIHDALRGG
>CP034015.1|AZG72707.1|1832455_1833100_+|two-component-system-response-regulator-UvrY
MISVYLVDDHELVRTGIRRILEDERGIKVIGEAPDGETAVQWSRQNEADVILMDMNMPGMGGLEATRKILRYQPDAKIIVLTVQTEDPFPTKVMQAGASGYLTKGSTSPEVLRAITQVARGQRYLSPEIAQQMALSQFNHSDENPFSSLSERELQIMMMITNGEKVNDISEKLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKMLDTGSF
>CP034015.1|AZG72706.1|1831796_1832216_+|YjbQ-family-protein
MWLQRELTLNPQRRGFHLITDEVIAQLPELRSLNVGLLHVFIQHTSASLTINENADPTVRGDMERHFNVLAPEGAPYFQHTYEGEDDMPAHIKSTLIGVSQSIPITNGRVNLGLWQGLYLCEHRDHASARTIIATLQGE
>CP034015.1|AZG72705.1|1830254_1830563_+|DUF962-domain-containing-protein
MEPKRYSSFAEFYPFYLSQHQDPVCRRLHYIGSSIILVIIINTLINQHWWQLLWLPVVGYGFAWLGHFIFEKNRPATFTYPLYSLWADWVMFGQMISRLWRK
>CP034015.1|AZG72704.1|1829556_1830186_+|GNAT-family-N-acetyltransferase
MDNNTLETLRAVYLTAEDLRVAASILYNAYHDDPYFIDVLGQDDNQQYEQKLRAAIREELNELWQQEQPLIGLFDGDRLIGVACVITQQVPLGEGRYWHWRFKMMLGTGWKSTQGFMQKETCIVENLPSQKCGVLQFIALSPNEQQKGYGAKLIQAVLGWCDEQPGLDGLGVFVSNPSHHQAFVKQGFTSIANVSIGNVDGDILFYSKA
>CP034015.1|AZG72703.1|1829141_1829378_-|DUF2789-domain-containing-protein
MDTTSNDLSHLFKQLGLADNQQGIDDFVKQNKLDKHTLIVDADCWNSGQKAFLKEALLEDAQWSEVIDQLDVMMRAKI
>CP034015.1|AZG72702.1|1828191_1828551_-|hypothetical-protein
MSPIEQVLAAAKSIANNGHTPSLALIKSRLGNSIPMPILIQGLQQFKALPKSEWQHLPELTDIPATADKSADNKPDLANVIQHVISLQQHITQLTQRVTQLENQLQNDAAQSNSNKADQ
>CP034015.1|AZG72701.1|1827417_1828191_-|hypothetical-protein
MFVTELRFECFADTTIEIVEKAINAFLEALRANGQILGREFAIAFNDGEFRVRLLLPEKTSLANRYHSPWVKVTLAGLTTAKLLAPREKLIGQDINSEVSSTDTPSWQLLYTSYVHMCSPLRNGDNLLPIPLYQLPATFNGDHKRIIKWQTEWQACDELQMAAATKAEFAALDEITQVDSDLFRRGWDLRGRIEFLTQIPTYYYLYRVGGESLQTELARPCPRCGSLDWKLEQPLLDMFHFRCEPCRIVSNISWDHQ
>CP034015.1|AZG72700.1|1824691_1827403_-|hypothetical-protein
MSYQQIISYYRDCYKEDSASINLWNVNKLKQEDRLILKGQDELGTGFLPRLPIPEEFAAPMLKRVAIYQRERVLLYARFLFVGKVSIKGELKTIISPLLFNEATIEQDKGNFYFCVQDQTPEINEALLQQLLPEDNELSEQLFSEDTQSPSFWTSYFNHNHIEISSLELLQYPKLAQSGDIKKALTKKTPSLLPISMLIFVERSTSSRGVLHELDNIINANELSASIAKLFNHSIAKPNEYSWPPKLKYDFLPGLLSSRQKKVIAIAANASLGCVSGPPGTGKSYTIAAVAAEHMARGQSVLIVANNEVALDVIADKLASNFNLGDISIKAGQKTFLKQLKNYTADLLAGYFASDLDNSPNASEDDINQQNQLLIKLEHRFIAFSQKAIGRGLRLHKLELQQSKWLTRAYLFFTQRSINQWQHQWSALEAINQHTIERETLASNYLNALKKNNLKTLVNQHLKSLQAFNQAIRSLTSSKQLMLFEQIEYPKLFAAFPIWLVSLNSLHKVLPLNCEMFDLVIIDEATQCNISSCLPAFYRAKRALIVGDTKQLKHYSFLARSKQVQLLDKHKVPDSSQGAISYRDNSILDLALKTLSSDQELAFLDEHFRSKPELIHFSNQAFYHSKLKVMQHRPCTSSGHLHLHRVAGTRDALGVNEIEAQRILADIQTQITTDMQAGIAQSIGIISPFSAQAEQIAKLIELHIPQTDIIKHNIRAATPFGFQGEERDTMFISFAVDNRSKRAAAYLNKADVFNVTITRARQQQSIYLSIDESLLPEHNLLRQYIGSISAFHAEHSVTSVIDTFQQQIIEALKGHHIETWPGYAMVGTEIDLLCRFDNKYLAIDLIGFPGPWANFFELTTYKLFKRAGVEVLPVSYGMWIVDKQACVDKIIHKLCGGLTKRKT
>CP034015.1|AZG72710.1|1837631_1838351_+|hypothetical-protein
MVEKEQLPSFAENTLKYIVDDIGEVIYSSHETLKKGDVYLLGLNPGGSGQNHPMTGVPYTIRSHLQSMLRRKENSYYDECWENGQSNYPKGEAPLQKRVIELLKGINIDDPKTVCASNIIFKTSRSSAELCFGLAGLCWPVHEVVLKIIQPSLILTYGIDKVSAYAFLKALFLKEEEVPPQPSLHGKWNCRGFHCDIDGVHTFVAAVPHLSYYSPANKQDVFNWIIANQNKAKERQNSV
>CP034015.1|AZG72711.1|1838603_1839812_+|hypothetical-protein
MLSVLYPEIVPIIQQMPFGILPESLILADEDYQAFIIKAPKEVLLTAKINGKFKLYLIPVKVDSHLTLGLITAFFDDEDEPLVVKTPLFQEDFARNLFRFLKKGILNVHFFDELARELLVYRADVIIPDETLSKINEVVLLEPTLSNAKKIMQAIEISFSSRTKKDDKQAIDIILSPPIYGDSIFRQDLCPKRHSYHGSRGHSHTMLERQEPGGYQEEDIVQCLLLTFQPEQIFLNPKRTYDDEEMCDILIITDTVSLIIQAKDSPNIEKISRQKLPRKRKNVLSALKKATNQVNGAISYYRRTQGKLEFFIDQVQHSVNINSLELKALIVVKELFMDQSAEFSPQILEIYKTKNVPCIVFGYPDFYQFCFNLKNEDAFLNAHHHIMENAKETGFFTQTRFW
>CP034015.1|AZG72712.1|1840993_1842652_-|putative-pyridoxal-dependent-aspartate-1-decarboxylase
MTSKITRQANASEDSLLRIFTAPEDSTSTLSIIEQKLSQDLAGFLGNSIAALEKPLSEIETDFSAYQIPTDPKFVSDYADEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQVLGMMHHLVYQQSDHFYHQWMHSANHSLGAFCSGGTVANITALWIARNRLLQPCGDFKGVTREGMTKALRFYGYDDLAILVSDRGHYSLGKTADLLGIGRDNIISIPTDEHHKVDVAAMRDAAEKLAQQNIKVMAIVGIAGTTETGNVDPLTELAALASELNCHFHVDAAWGGASLLSKKYSHLLKGIELADSVTIDAHKQMYVPMGAGMVLFKDPELAKAIVHHAEYILRVGSKDLGSQTLEGSRPGMAMLVHACLQIIGRDGYEILINNSLEKARYFGSIIDQHADFELVTAPELCLLTYRYVPKSVQAILTTALANQDTVLVASINELLDGLTQFIQKHQREQGKSFVSRTRIKPAKYLRQQTTVFRVVLANPLTSHQILHDVLTEQVEIAALDSEYLPQLLALIAQTHQ
>CP034015.1|AZG72713.1|1842882_1844052_-|glycerate-kinase
MKIVIAPDSFKESLSALEVANAIEDGFKQVFPNAQYCKVPMADGGEGTVQAMVDATQGQIINLTVTGPLGLPVNAFYGVLGQLDEDGNQTAIIEMAAASGLHLVPSTQRNPLLTTSFGTGELIADALDRGIRHIILGLGGSATNDAGAGMMQALGVKLNDITNTALPLGGAALATLHYIDMQSCHPAIKECAIEVACDVDNPLCGPRGASAIFGPQKGATTEMVEQLDLALGHFAHVINQHLNQPIDGHCQLHPGAGAAGGMGFGVMTLLNATLKPGVDIVTKSVKLAQHCLNADLIITGEGRMDGQTVFGKTPMGVLNVAKQQNIPVIGISGCLGENADVILAEGMHAIFPIIPALQPLEQVLSEAQVNLTNTARNIAAIMSLSFASK
>CP034015.1|AZG72714.1|1844072_1845431_-|GntP-family-permease
MGLILILLGVIAFIVIATSTFKLHPFLTLILASFLTAFAYGLPSNEIAKTITGGFGGILGYIGLVIVLGTIIGTILEKSGAAITMADVVIKLFGQRFPTLTMSMIGYLVSIPVFCDSGFVILNSLKQSMANRMKVSQVAMSVALATGLYATHTFVPPTPGPIAAAGNLGLESQLGLVIAVGVFVAAIAAFAGMLWANRFANEQPDGEGADELNLQQEDFDDLKKTYGELPSPTKAFAPIFVPIILICLGSVANFPSKPLGEQGLFDLLVFLGQPVNALMIGLFLSLSLLKSNQKIKEFSDRISQGLVVSAPILLITGAGGAFGAVLKATEIGAFLGSSLSALGVGIFMPFIVAAALKSAQGSSTVALVATSALVAPLLGDIGLASEMGRVLTVMAIGAGAMTVSHANDSFFWVVTQFSRMSVKQAYRAQTMATLVQGVTAMITVYLLSLFLL
>CP034015.1|AZG72715.1|1845560_1846718_-|CdaR-family-transcriptional-regulator
MFQIDTQIAAKIVDRTMKIIGHNINVMNAQAVILGSGDIDRIGSVHEGALLAISQNRNVEINQTIASNLQGVKPGLNLPLHYQGQVIGVIGITGEPDTLSHYGELLKMTAEMIVEQANLQEQLQWQNRQKEEFISQLIHANEQDLPSLQQWALQLGIDLNVPRVAAIIELDSNNPLYQQDNQALKQVLYLLQNPVRDNLIAMTSLTQLVILKPAFLDGKQFDPELENQRINKLLKRLPANMQLSLHISLGHYFGGELGISYSYRTAKETLDIGKKLHPTKTKYLYQDYSLQVLLSGLRHHWRGNALAGPYLKLIEVDNNQQLQKTLAAYLDHMGDIQACANSLFIHRNTLRYRLDKIQTITNIDLRSFNGLLSLYLGQLIHQPST
>CP034015.1|AZG72716.1|1847088_1849176_-|MtrB/PioB-family-decaheme-associated-outer-membrane-protein
MNTKLNLITLALLTSTSFSLMADGYGLANANTDNIKYDAWQCKACAVATGTTGTVGVGIGYNSEDDIHSANAFNSSNQTAGKIDADINYRGNNGYQAKVAANNLGMDNGRMEIDVGKLGLYRLNLGYRSIATYQSSNALSPYQNIGSDNLTLASNWVTAGASSDMPMLYSSLTPFELSLKRERAGLGLEYQTESLFTTYVNFQREEKTGTKIASGSFFNQSIMLAEPVDYTTDILNAGIKLGGDNWFTSLNYNGSVFSNNNQQLGFDSAFNPTFGAQSRGYIALDPDNEAHTISLLGQYNDSITSYSGRLLLGQMTQDQQLTNLGYSDSLPADSIDAKVDITGMTLKAITKLNRKWRLSGSYDYNDRENNTQIEQWTQISINDVTGKVRYNTPYDLTTHRAKLSTDYRINHNIKLDAGYDFKRDERSNQGRETTDDNNVWARLRVNSFDMWDMWLKGSVSKRDGSEYQASESSSSEQNPLLRRYYLADRDRTQMEARFNHTPMDNLNVDFGVRYAIDDYADTQIGLTESKDTNYDINVNYMINDDMNVNTFYNHQIIKSAQSGSANFNIATWQADIEDTVDVVGAGLSYNNLMDSRLRLGLDYTYSDSDSTTQVSQGISGNYGDYFAKIHNINVYAQYQATEKMALRIDYKMEKYLDNDDANDIAPDTIWNVISLGNLQHNYTAHMIMLNVSYKL
>CP034015.1|AZG72717.1|1849188_1850178_-|DmsE-family-decaheme-c-type-cytochrome
MKTTHSINTLFLALLCLTASTLFMSNNVQAAKWDASMTPAEVEATLDKKFAEGKYSPKGADSCLMCHKKSEKVMDLFKGVHGAIDSLKSPMAGLQCEACHGPLGSHNRGGKEPMITFGPTSTLAADKQNSVCMSCHLDDKRVAWDSSHHANADVACASCHSVHAEHDPVLSKQTEVEVCTTCHTRQKADMNKRTSHPMKWNQMTCSDCHNPHGSLSDSDLVQPTVNETCYSCHAEKRGPKLWEHAPVTENCVNCHNPHGSVNDAMLKTRAPQLCQQCHAGENHTSNAYLGNTDMGSTVNGNAFTGGRSCLNCHSQVHGSNHPSGKLLQR
>CP034015.1|AZG72718.1|1850275_1852237_-|OmcA/MtrC-family-decaheme-c-type-cytochrome
MMNKKYIKKALLLAMSASMTLVGCGGGDDGVAGNPGTPGGEPAEAIKTLNLDITKVTYQDSKPTIEVFATNEKDLPVAGLKDFEIKKVVQLIPAGASGAGNSAQWQFIGSEKAFTDHGNGNYSFTVNVEGFNPDLTQRYNVIASASTLQDGVTGVPRTEITEDFDGEGFEAKYTKNIVSGATCNTCHAEGESIYHSYTDLETCTSCHTNELAIEKGKVQDEFSHLIHNVHNNAKMYGRNLDKSAEVAHAIVQDNCTTCHVNSEQLSESNNWSRIPTMEACSSCHTDIDFKTGQGHPQQVDNSNCIACHNASWTEELHTTSYTQKKAFIDLYGMTATLTANKSSAEDKSATLSVTILDANGTAIDATSLVSKIQRVETITNVGPNFPIMGYNPSPGSGLAKISKDLIKAGLLQADVVIESGKLVYNIASLPFGSGDTDTAFSFIGLEMCNDGLQAIDCVDSVATTSMKAEFTVGTFSGNAPSYRHTDSVNFGSCDNCHGDTFELHKGHHAGFVMSEQLARELNGEVTIGLDGCVACHTPDGTYASGANKGAIEMKLHSVHGEQGIIKDCTQCHNDFNLDAFKVKGALATSAGLYTTPITATCASCHGFDTISQHAQSQGAVVNGSYQEANDAAQLETCFFCHAPTIENHTQVKL
>CP034015.1|AZG72719.1|1852523_1854698_-|OmcA/MtrC-family-decaheme-c-type-cytochrome
MMKTITVSPAAKAVLGAGLMALALSGCGGSDGTNGEDGPDGIIGVNIDATSTLKATFTDATVVNGKVSVAFTLKNANGVAVLGLTKDHDLRFGIAQLTPVIEMVGADGAKVEVDRGYQWQSYINTTKQPNASWIPDGETDIAPSAQFQAEVEAASKCADCLVDNLDGSYSYTFQTNIAQVIEPLSITYQAEDTQRITLELQQPLITANAHYDFQPSTGLTEDIASRDVVSINACYTCHQPESLALHGGRRIDIENCASCHTATSGDPETGNSVDFTYMIHAIHKGQDRVTSTADGNAAAPYKVIGYGGGIHNYGNVMYPQKPAADCSACHVEGTNAPKDAALFNANKSDTACIACHTELASQQHIGVGTNCTSCHIEEGYARSAKEAHGDVMKAYNDTQTMKVVFSDVTVTADNKFSTNVSFTDVSGQVIPAEFIDQGSRIVMAWDSDKNYPAYNDASYSARRLKLNEGTANTDNSWTMVWNNVTLPTDYVGKTFELWSAVTACYNHGGYGRPEVKLTACSTDNVQKVEIKSSPYHFVMAASAVDNSQSTAARRNIINTASCQGCHNQEVYHYDNGVNCQTCHTADKTLRSDDTYPGGKKSTSFAFKAHSAEGHYLKYAGVKSGTVLKTDCKTCHTADGIQLGRAADRVWRYGDIETGADVWMSSDTGACLSCHQKYRTDATVAHIESNGGIVDGISEDDARNRSSEICSTCHTVDRVTKTHGF

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Crispr_ID: CP034015_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034015_2

3698327-3698422

Orphan

Consensus_repeat	Method
AGCGTACTAGCAGCGCTCTAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034015_2

>merge|CP034015|2|3698327-3698422|CRISPRCasFinder
AGCGTACTAGCAGCGCTCTAGTCAGCTAGAATTCAGTCATCTAGGCTTTTGCTTTTATAGCCTCTAGCCGCGCAGCGTACTAGCAGCGCTCTAGTC

>CP034015|2|2|3698327-3698422|CRISPRCasFinder
AGCGTACTAGCAGCGCTCTAGTC	AGCTAGAATTCAGTCATCTAGGCTTTTGCTTTTATAGCCTCTAGCCGCGC
AGCGTACTAGCAGCGCTCTAGTC

Protein	Signature genes	Signature genes Name	Protein_function
CP034015.1\|AZG74118.1\|3700960_3702853_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
CP034015.1\|AZG74117.1\|3700327_3700900_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP034015.1\|AZG74115.1\|3698452_3699541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|308585
CP034015.1\|AZG74122.1\|3707444_3707783_+\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74121.1\|3705785_3707117_+\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74114.1\|3693203_3698093_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236848
CP034015.1\|AZG74105.1\|3684715_3685837_-\|response-regulator	unknown	unknown	gnl\|CDD\|381107
CP034015.1\|AZG74119.1\|3702864_3703995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378436
CP034015.1\|AZG74106.1\|3685884_3686664_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
CP034015.1\|AZG74123.1\|3707817_3709140_+\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74120.1\|3704330_3705380_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP034015.1\|AZG74124.1\|3709507_3710116_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132044
CP034015.1\|AZG74110.1\|3689808_3690006_-\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74113.1\|3692252_3693200_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
CP034015.1\|AZG74112.1\|3690835_3691804_+\|DUF3187-family-protein	unknown	unknown	gnl\|CDD\|288272
CP034015.1\|AZG74108.1\|3689073_3689385_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|225166
CP034015.1\|AZG74107.1\|3687007_3689062_+\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74109.1\|3689467_3689809_-\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74116.1\|3699555_3700200_-\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239268
CP034015.1\|AZG74111.1\|3690372_3690582_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034015.1\|AZG74118.1\|3700960_3702853_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.86196e-101
CP034015.1\|AZG74117.1\|3700327_3700900_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.61486e-11
CP034015.1\|AZG74106.1\|3685884_3686664_-\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	4.11077e-92
CP034015.1\|AZG74114.1\|3693203_3698093_-\|PAS-domain-S-box-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.22184e-117
CP034015.1\|AZG74105.1\|3684715_3685837_-\|response-regulator	gnl\|CDD\|381107	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains. Pseudomonas aeruginosa RssB is an orphan atypical response regulator containing a REC domain and a PP2C-type protein phosphatase output domain. Its function is still unknown. Escherichia RssB, which is not included in this subfamily, is a ClpX adaptor protein which alters ClpX specificity by mediating a specific interaction between ClpX and the substrates such as RpoS, an RNA polymerase sigma factor. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.61608e-44
CP034015.1\|AZG74115.1\|3698452_3699541_-\|hypothetical-protein	gnl\|CDD\|308585	pfam03022, MRJP, Major royal jelly protein. Royal jelly is the food of queen bee larvae, and is responsible for the high reproductive ability of the queen. Major royal jelly proteins make up around 90% of larval jelly proteins. This family also the sequence-related yellow protein of drosophila which controls pigmentation of the adult cuticle and larval mouth parts.	4.49618e-17
CP034015.1\|AZG74120.1\|3704330_3705380_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.57353e-67
CP034015.1\|AZG74124.1\|3709507_3710116_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132044	TIGR02999, Sig-70_X6, RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.	1.59897e-28
CP034015.1\|AZG74113.1\|3692252_3693200_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	2.77872e-86
CP034015.1\|AZG74112.1\|3690835_3691804_+\|DUF3187-family-protein	gnl\|CDD\|288272	pfam11383, DUF3187, Protein of unknown function (DUF3187). This family of proteins with unknown function appear to be restricted to Proteobacteria. These proteins are likely to be outer membrane proteins.	7.69433e-131
CP034015.1\|AZG74108.1\|3689073_3689385_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	4.48983e-24
CP034015.1\|AZG74116.1\|3699555_3700200_-\|AhpC/TSA-family-protein	gnl\|CDD\|239268	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.	5.83734e-44
CP034015.1\|AZG74119.1\|3702864_3703995_-\|hypothetical-protein	gnl\|CDD\|378436	pfam10442, FIST_C, FIST C domain. The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids.	1.0593e-39

>CP034015.1|AZG74114.1|3693203_3698093_-|PAS-domain-S-box-protein
MTKLSSYKNALKLGIGVFAFGLVISFVTALSVKNQNNDIITKSLKAVTEQVANNIIDRIVLYQYGLRGARGAVSTIGEDNITREIFSKYSSTRDIESEFPGARGFGYIRRVPKADEADFVAKAKMDDWPDYSVRQLNPHDDERYLIDYIEPVERNVGAVGLDIASEENRKNAAQQAYLTGEVRLTGPITLVQATGHPLQAFLILMPIYRTGFTPSTPELREQNAFGWSYAPLVANEVFDNINLSRKTTKIFINDVSDDQNKVMFYETHVNDLNPLSSFFVTLEREIFGRKWQVSLLAYPEFISGLHLTSPKIVFSYGVIFSLLLGGFVGFYGYALGRKRMIIEDNERRANILEHSLDAIISFDCDGVITSWNDGAITIFGYEKSEVIGLKKTTFIVPNDGIDAENEQFNQVLSGKSLLNFISQHKRKDNELLSTSMTSLAIYNEFGKIIGVSQTIRDITIQLNAEKQILSINASLERKVTARTHALQQALSENKTLLDNINQQLLYSETDKNGVILAVNDYFCITSGFTREQMIGNNHSIVKSNEHDDAFWKNMWQTINSGQTWHDEICNRDSQGNIKWLDTVIAPVMDQSGNLDRCIALRIDITERKNSQLEKNKLGSLLTNVLAAATEIAIISTGNDGIITMFNRGAELLLGYKAEEIVGKQSPAIMHVPAEVHQRSIELSEEFGEEISTFDVFVYKPRTQGPETRTWTYIRKDFTQCQVSLSVSAMRDQSGEIIGYLGVAVNIDTMLKQQEELVSASNQLIKAAEVAELGIWNLDLDTNDLQWNDRMFAMYDYPLSLSEEGLNYQHWQRRIHPDDVDMATFALQQAINLNIAYDPIFRVITRSNQVRYIQAGAQISYDKLGKPVRVVGINRDITEQRELEQTLRLAKQAADAASAAKSAFLANMSHEIRTPMNAVLGMLQLIQHSDMSRQQVDYVTKAEIAAKSLLGLLNDILDFSKIDAGKLELDLHPFQLETLMRELAVMLATNGHNKNIEVIFDLDPAIPYLIEGDELRLRQVLLNLAGNAIKFTAEGHVIVSVHCNESNEKQVNLTISITDTGIGISAEQGDKIFQGFVQAESSTSRRFGGTGLGLAITKRLVELMGGELTLKSHIGEGSRFWFDLTFNIVEVKNSDVDIDLLGKNILLVDDSKMSRKILSKTLMAHGAYVNEAHNSKQAINLIDQSLNATSHYDVIIMDWRMPDMNGLETANHIQSMFAAGKAPAIIMLTAYGAEVMEQTKQYSHAPFVSMLTKPVTANLMLEAVYQAINGLEQPLQTKKITQLVLKDVRVLVVEDNQLNRQVIDELLRLQGAIVTLANDGIEGVDWVTKSNNQFDIVIMDMQMPVMDGLEATRLIRADGRFNDLSILAMTANASLADKALCLEAGMNEHIGKPIDMALLLPCMLNLLTLEDNTYYHSIVDNQPIGLPEVLSDSDDDVIIEDPDSILRRFGGELAFFIDVKHHFAAEMSEQLSMLTQAFEQQNNDAISSIAHTIKGTASNLGAKRLAAFAAMLEQNINNAINVDSVTCLSQMQSQINDSLHMLDTLFPDESAVLTASPLDNKAALPIQSIAADKMNHLMELLLDQNLDAIEYLERLLNNVAADKQWLRLKNQVSQLEFLDAIDTLKSIIKE
>CP034015.1|AZG74113.1|3692252_3693200_-|diguanylate-cyclase
MFIDEYISGAEPVRGKILLVDDQVVNIKILHQLLQADYDIYMARDGHQAIDMSKKVKPDIVLLDIEMPMLNGFDVCAHLKNDPETEDVAVIFVSGHFDEDKEVKGFQLGAVDFIHKPINPVITKARIKNQIKLKLNSDLLRAIALLDGLTGVANRRKFEQVLPVSWLQCAREKQPLTIILLDIDFFKHFNDTYGHTEGDICLRAVAQKIQDTVNRPYDLVARFGGEEFICVLPNTDLIGGTYVAQQIVDSIVSLKIAHKNSPISDFVTISAGVSTIVPMFDMPNKILVETADKQLYLAKDRGRNRVLGCLVEENT
>CP034015.1|AZG74112.1|3690835_3691804_+|DUF3187-family-protein
MTTNLKLISVLTACSILPAHAQMVSFDDYGPLQVYAQSPMQSINLTPLLRSGFSLPKGQKEWYITANVASVWSESDDLLADYYQNAISSGLKWQITEDLLLDASYTWQFSGDNHLDSLTMWFHDAFGFDQNGRNQQAKHQNQIHSNKNGINLDNFSGETLNNALNAYLGYQVLQNEHHGISVGGALYYKYVDSGPFVDESLQQSLQINYGYHNGNHHVNSTLGISFLHNKEPVSQRAFESHYLMLGLGYEYRTGRHGWLAEYHRYDGMVSWDENFSEASNEALLGYRYYFNSSAIEFTMVENFLNMDNSADIAFNLGYRHKF
>CP034015.1|AZG74111.1|3690372_3690582_-|hypothetical-protein
MNITTKDGNDVYAGEINDLEFYDFSGCEILHIEIVWLYVRLIFKQYGIRYLNYRHIGYISYIVHLSGVH
>CP034015.1|AZG74110.1|3689808_3690006_-|hypothetical-protein
MKRLYCRVTQALSLNIFSISPILAIHHLLIRLGVYAAIFVDDFILDNIIYSNVDMDICHSPIRGA
>CP034015.1|AZG74109.1|3689467_3689809_-|hypothetical-protein
MNFIGLLGLLAVYIPIQMCIDVFIVNRSNVQKKGSDYALAFIPLLTLFYPEHYLYSFISLALIVLYGISLRYYAAFNDWLDFDQDHLAGLCLGGLILGGIIITIRLFYQFVLH
>CP034015.1|AZG74108.1|3689073_3689385_+|flagellar-biosynthesis-protein-FlhB
MKDDSKKIQQAVALSFDGKSAPKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFLQLLELGDEVPKELYLLIAELIAFVYMLDGKFPEQWSNLHQKIVAQA
>CP034015.1|AZG74107.1|3687007_3689062_+|hypothetical-protein
MAVPTTLPKKAVNTVTFKPADASQQPVPQDKKTQIDSTSLPTKTTNDKSVSSTPSSTKSDLAAALLPVKVLQPPTSAQLNVTIENQQYQLNKTAELQKLLQQTTQVVIASDQAKLVARATASVNQPTAQAEVISNQVTPSTLTSASTASATVSPPQTVTTQLVLLAQPILFALPQALEELAKQNGVSTQQLATLATRAQGYPLPTAVIDQGQLTFFGGTSIKLASNTSLSSGQYLAKVVVQNQQLQLALTPVIAEISVNLAKLNSPQTIQPLQTENIVITKNEPAQILSQFLKKLESTPLPSNNNVTKAGDTLTNINTGSASVMSQIGQNSSTAKTAVPITQQAAPTLPPETNLAKTSIDKTQPTTPPQSAITSPNTLKADTAPIIIKNDLPNKLTTDPAPIEVLNKALSKAGAMPIKQQLTQQIPHNLASELFKHLPQIGPHPLSALSDPALLSSELYSLAALNLAQTQLGHTSSSQTSPLFSGSAIASLFQILLGVKTKSTGTAISDKLQAHLAQLQQRTLSKLSANSGLLAALDKLGGTDSLAQLASSIALYQHASTDPNQAMTWYFALPYSINQRDEQFEGKFEQETDPNTDKKAGWKLQLKFNLAQGSLLICVHKQAEVLDIQFKGNNQMLLTKVERFNQALSEKISQIGFTPGKLTTQLAQIPATLLPGDHYLVKTRA
>CP034015.1|AZG74106.1|3685884_3686664_-|VacJ-family-lipoprotein
MKYKWILLQVIFAVSIPVYAQAEAPQVIASSLPAVEIKYNDPRDPFEEINRTMWDFNYLFLDRYIIRPVAHSYKDYVPNPVRTGVNNFVYNLEEPSSLVNNTLQGKWGWAANAGGRFTVNTTLGLLGLVDVADMMGMHRKQEDFNEVLGYYGTPNGPYFMAPFYGPIVTREIASDWVDGLYFPLSELTFWQSVLKWGLKGLDARSKAIDQERLLDNALDPYAFVKDAYLQHMDYKVFDGDVPSNPASDELLDEYLDELE
>CP034015.1|AZG74105.1|3684715_3685837_-|response-regulator
MALTDVEILFVEDDPIFRGVVTDFLQAQGARVQQACNGNEGIVLFSHAIFDIVIADLSMPGLDGLSMLKQMQDINPAIPAIVISGNDVMSDVVEALRIGASDYLIKPIADLLIIEQAIVQALMTASTPMNVSGQSHLQEMNELSYQELTDNVFLLEQNAQAAKSVQQQLFPASHVYYPKADINYSLFKNNDVSAYFIDSTMVGEDHLIMYMAHFSPEDNSAAFGCVLLRSFINQKLKLFRNGLSNTLIEPDNMLAYLNDRMVKSGLHINTDIIYVCIDLSQYRLLIGQSGKGLRCYLRNGNDLTPLALPESAPLGCSLWGKPSMHIRTLLRDEQICIGTHLHEHKQQLLENRFTGLVYQSDIKAGGFIQLACR
>CP034015.1|AZG74115.1|3698452_3699541_-|hypothetical-protein
MFKRLFMSRKSILASLALLSSLLSCSVLAADYSVFRELDGQHPPGNVAVSSSGRVFMSNHHFYGVNSRIVELKTDGSIVDYPDTAFNQNLNPVLGVVIDEQGILWMLETASADDGVGRLIGWDTEQNSLYKMISLAAPVLPKNSFLNDLAVDRKHETVYITDPAGGSNAGLIVVDLTTGKARRVLGGSVYTRPEDVDTVINGNTLSIGGQPIRIGVDSLTIDPSNEWVYFGALSGEKLYRVHTQYLLDAKMSANMLRSKVEFYANKPISDGITIDNGGNIYVTDISHNAVGYIDTDRQYHILYQDDDKFSWSDGFSTTADGKLLVTVNKLHQSPAVNNQQDKSDGRYYIIQFDALTETTVGR
>CP034015.1|AZG74116.1|3699555_3700200_-|AhpC/TSA-family-protein
MSLSAQLTEKRDATKANLPAQTLAIMSDATLNLKLSGIIDSAPKAGDKLAEFSLINSLGETRHLADLLAKGPLVVTFYRGGWCPYCNLALRAYQQHLAEFKQLGATLVAITPELPDMSLSTAQKNELEFDVLSDVNAEYARQLGLVFSLPESVRELYQNFGVEVEKHNGADQFDFPLAATFVVAKDGIIAKAFVDADYTYRLAPEDIISSLKAL
>CP034015.1|AZG74117.1|3700327_3700900_+|TetR/AcrR-family-transcriptional-regulator
MAKKNFEREDVLDKVITLFWQNGYAASSIQQITKATGLKPGSLYYEFESKEGLFQAALERYATFSIDAIHQSMANAPSVNQAIKQILNDLIEQSKSCEYCGCFLIKTQLELASQGNKLYQFASAQLAQIEQIYVTYLSKSVTEAQAKAYAAQLMTVIFGIRIYGYQADSAETSANTVTALLPWLTTIVEG
>CP034015.1|AZG74118.1|3700960_3702853_-|EAL-domain-containing-protein
MHKLLLRQLKRTQKDELFIADNNNLLSSISDAYAQHEQSVKMLERSLFLISNELNERNETLKSQLAEMKQVQHKLEHSIGLLNATFNSTGEILFVYALNGELLSFNSMGQAFFDESGFKPVSHWEEFMSIVKDKQHMLSIIDDLNQNPFQYLTGTIELLDKRFFDFRSLPQIQEEKISGRVWCFRDVTVQKQYEATIEYHAFHDALTGLPNRALLLDRISHSIASSKRENNKLAVLFLDLDDFKKINDTEGHDAGDLVLKEVVRRLQGRLREFDTLSRQGGDEFIIVLEKIESEMVIKQVCQDLLALIKQPFIIGSRQFVVTSSIGISIFPNDDNNANALIRKADLAMYQSKSLGKNSFHFYSQALEKEALTQLAIEQSLRKAIENNDLYLVYQPKVDLHTMKVVSVEALCRWTQEDGTVIPPDVFIPIAEQTGLIIDIGRLVISKACLQLVKWREAGIGELAISINLSCLEFQNEALITHLIDTLTHHKLEGKSLIIELTESIFMEDKFSVKNIMLRLNEYGITFALDDFGKGYSSFSYLQFLPLHYLKIDKAFLQDVESSSSSAAIAKTIIDIGHNLGLKVIAEGVEDQFMLDYIKTYECDLAQGFYLYKPMLPEAIESLYLVNDPSH
>CP034015.1|AZG74119.1|3702864_3703995_-|hypothetical-protein
MHVFQTIYQNSHWDKPLPQCLSSNLLLAFGSPELMLSKQLNDELSIAFPNAQIVGCSTSGEIQDDCLYDNSICVTAIDFDHTQVQVVSHSINQFEHCTELAKQLVGELSLDGLKHVLVISDGQLVNGSELVDGLQQYLPQGVMATGGLAGDGERFSQTTVWHNKRIESGLIVLVGLYGERLSVGCGSLGGWRPFGPKREITKSTDNVLYELDGRPALDLYKEFLGEFSSGLPASALLYPLALQQHGEQEHVVRTILSIDERQKSMLFAGNMTEGATCQLMHSNYEDLLEGAQLAADNAGASFTETPVELAILISCVGRRLVFGQRVEEELEIIKQGLPEQCVISGFYSYGEISPVKSIGRCGLHNQTMAVTLLSEK
>CP034015.1|AZG74120.1|3704330_3705380_+|GGDEF-domain-containing-protein
MLTSIKKHLKSNGNLKHARVIALFSLVGMAITGAMGILSLWGNSSTLTIILFIASAIYLSAFFLSKKFSLKVSGTIIIYSLYLLMFYLVFSGGVAQTGPLWVFIVAPVSVYVLGLRQGLINLAVFLSVVSIIMFLPQHVIEHASYTPEFKLRLILSFLTMTFLSALYEYSRMQSYKNVVALSSKYQQLAMSDPLTKLANRRNASAVLQQEKSRVNRNNEPLSVLLCDLDHFKAVNDKYGHNAGDMVLMELSQIFTDHVRQQDCVARWGGEEFLFILPQTSAEQANIIAEKIRASVQQHSIIFHKHQIKITISIGIAQLSEDQSIDELINHADKNLYQAKTLGRNRVHPG
>CP034015.1|AZG74121.1|3705785_3707117_+|hypothetical-protein
MTNIFKFSTVVAAIFIAQGCTQGPDIGKIDDSSMRYLGSSKVDIYTLDSSAIEDWAEAKADFKRRMEEVTGTKDFSDAEAVVEAVDDLIDEMDLVDLVDDVKPFNLVEAKAKLKATYQAQLDNELAQLAASKAEKDAFLPTYNESLAAFEKGRSDIESFKSQRDALSDAFQLAKTEAIKSLADVGVDSAGNIGKRLNIDRFYNTYSYNFTEALKDKTCRELDRNSGNKPNSIYYSDARITDDKSELVCTKIAFPSSYGSDNTENQKLKEPQINAIKLALNKAQSYLRDANQLIKQSNSYYQDHPQIADLHNRYQRNDRRMLESIETKVKWAQDAVDRVIIPSDEKIATEVAFEHMRTLNLYSEFHYNNILLNQLDYVATVSADGRFKLDNSEKFNLLIARPERKINQKAAYKIIRLAEFDDKALVTIGLNDILTSKEFQTITL
>CP034015.1|AZG74122.1|3707444_3707783_+|hypothetical-protein
MLKKSFIVAGLSLLLAACGGHGYEGQYESSIEATGLGSLNSMMPKTTMYIGTDYIESNGQKIEVEKIYVKEQDDRKFLIMQTQEGDQAYIIDKDGSLLIKSGLATIKFTKVD
>CP034015.1|AZG74123.1|3707817_3709140_+|hypothetical-protein
MKKYTSLISIALLSAGLTACGGSDSNENTDDSVNTPSNGNGSSSSEQSVYMAPTGELAQKMLAITPSASDNSVEAQCSTTSSVYETTDLYVGFSSSAKSNGNDADLIYAAQLTQVALNELVTATGLNKSNDLNLDGQNKWVICLDNNKTGIGTSSIASMTFSPFELDADSFKLAKHELFHVVQSELLEQSTVYLHLPRWFQEGSAEYFASMDSSNVSRSLLMNFTSDLASNSSLQGLQSAYGINTYNHQQDILEAYPQYDNKLYSIYKTSVNYLVDKGLTDQALISLIRNSYQAGQDPQTMPQFHSEIAMLQATGAFTLPSGYDYTDLLTTEGYSELILNDWLNTDQYSASFTSVSATVTIARLFLIPTLDQENEYEVTVNTDQSGYSYAVGSIPDGDYQIYAIDTADENAYGPMTQSVVNGELGDIDFTGVNVCETCDD
>CP034015.1|AZG74124.1|3709507_3710116_-|sigma-70-family-RNA-polymerase-sigma-factor
MTESEVLCLIKAWQNGEPEPTKVLMELAYIKIKEYANIHYDNLPEDVNTAFLSLSVTDLTHDCYEKLLVAESTLPVETLREFYSYLNSTVRNLFIDHYRKTVKSKARGMSKVSSTIAINQKGQSLEDDFNSIILYLEMDGFSKHYARQAEALDLRYFAQKSNKEIARLLGVSLRTVENDLRFAKAWLKQRMQPSVQPSREFA

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Crispr_ID: CP034015_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034015_3

3813706-3813800

Orphan

Consensus_repeat	Method
TCTTAGCAGTGACGAAGTCACGCCCTAGAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034015_3

>merge|CP034015|3|3813706-3813800|CRISPRCasFinder
TCTTAGCAGTGACGAAGTCACGCCCTAGAAGCGGAGCGCACTATCCGTGTAGCGGCCTAGGATCTTAGCAGTGACGAAGTCACGTCCTAGAAGCG

>CP034015|3|3|3813706-3813800|CRISPRCasFinder
TCTTAGCAGTGACGAAGTCACGCCCTAGAAGCG	GAGCGCACTATCCGTGTAGCGGCCTAGGA
TCTTAGCAGTGACGAAGTCACGTCCTAGAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP034015.1\|AZG74200.1\|3805834_3806368_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
CP034015.1\|AZG74214.1\|3821729_3822056_-\|DUF469-domain-containing-protein	unknown	unknown	gnl\|CDD\|183281
CP034015.1\|AZG74205.1\|3811128_3811947_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
CP034015.1\|AZG74207.1\|3813114_3813576_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
CP034015.1\|AZG74206.1\|3812182_3812731_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
CP034015.1\|AZG74203.1\|3809122_3810160_-\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
CP034015.1\|AZG74211.1\|3818396_3819338_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP034015.1\|AZG75222.1\|3812751_3813051_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
CP034015.1\|AZG74208.1\|3813864_3814563_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
CP034015.1\|AZG74202.1\|3807998_3809111_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
CP034015.1\|AZG75221.1\|3804573_3805587_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
CP034015.1\|AZG74201.1\|3806478_3807582_-\|hypothetical-protein	unknown	unknown	unknown
CP034015.1\|AZG74215.1\|3822090_3822807_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
CP034015.1\|AZG74210.1\|3815891_3817748_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
CP034015.1\|AZG74213.1\|3820808_3821723_-\|glutaminase	unknown	unknown	gnl\|CDD\|234880
CP034015.1\|AZG74209.1\|3814563_3815703_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
CP034015.1\|AZG74212.1\|3819767_3820580_-\|DUF2884-family-protein	unknown	unknown	gnl\|CDD\|378556
CP034015.1\|AZG74204.1\|3810187_3810874_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
CP034015.1\|AZG74216.1\|3823522_3824596_+\|adenine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|182805
CP034015.1\|AZG74217.1\|3824630_3824909_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059

Protein	Function_ID	Function_description	E-value
CP034015.1\|AZG74200.1\|3805834_3806368_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	6.44569e-58
CP034015.1\|AZG74210.1\|3815891_3817748_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
CP034015.1\|AZG74205.1\|3811128_3811947_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	6.25049e-106
CP034015.1\|AZG74207.1\|3813114_3813576_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	6.74435e-61
CP034015.1\|AZG74209.1\|3814563_3815703_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
CP034015.1\|AZG74203.1\|3809122_3810160_-\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP034015.1\|AZG74214.1\|3821729_3822056_-\|DUF469-domain-containing-protein	gnl\|CDD\|183281	PRK11702, PRK11702, hypothetical protein; Provisional.	2.81891e-65
CP034015.1\|AZG75222.1\|3812751_3813051_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	9.01932e-52
CP034015.1\|AZG74206.1\|3812182_3812731_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	1.32499e-11
CP034015.1\|AZG74202.1\|3807998_3809111_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP034015.1\|AZG75221.1\|3804573_3805587_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.17697e-156
CP034015.1\|AZG74215.1\|3822090_3822807_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	7.38944e-107
CP034015.1\|AZG74208.1\|3813864_3814563_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.60829e-113
CP034015.1\|AZG74213.1\|3820808_3821723_-\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
CP034015.1\|AZG74211.1\|3818396_3819338_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.16489e-77
CP034015.1\|AZG74212.1\|3819767_3820580_-\|DUF2884-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	3.58213e-80
CP034015.1\|AZG74204.1\|3810187_3810874_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	5.9291e-135
CP034015.1\|AZG74216.1\|3823522_3824596_+\|adenine-DNA-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
CP034015.1\|AZG74217.1\|3824630_3824909_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	3.42951e-56

>CP034015.1|AZG74207.1|3813114_3813576_+|DUF4426-domain-containing-protein
MFQSLRLSRPLLPILLLSLITISSIGNAHAEQKQQVGNFDIHYMALSSTFITPEIAKTYGIERSSYNGLVNITVLNTSQDGHPAVPVEISGIANNLIDARITLDFKEIREGHSIYYIAEVPYRDDQEVNFTIAIKYGKQLNTSLKFKQKFYVD
>CP034015.1|AZG75222.1|3812751_3813051_+|YggU-family-protein
MNAVSYINDEQQGDLLLIVYIQPKASRDQIIGLHGNELKIAITAPPIDGKANAYLSKYLAKACKVPKSQVHIIKGEQGRHKQIKICQPRVIPPEIAALL
>CP034015.1|AZG74206.1|3812182_3812731_+|YggT-family-protein
MNAMSFLVNTLFDLYLMIVILRFWLQLARADFYNPFSQFVVKATQPIIAPMRRLLPSIGRIDTSSMLLALIVVLVKMLVLTFMTNATVDIVTLLLFSVISVIKQAGVLLFWMLLIRAVLSWFNQGYNPIVMVMTQLTEPILAPVRKILPAIGGLDLSVLVVFIAMNFINMLCAQYIPFWAII
>CP034015.1|AZG74205.1|3811128_3811947_+|pyrroline-5-carboxylate-reductase
MTQAKVCFIGAGNMTRSIISGLVKHGYPGDLIHATNPSKGKLDALQQDFSIQVSHDNNAAAQAADVIVLSVKPQLMAAVCEDLSSLDLTDKLIITIAAGIPASRYQVYFKQPIKLIRTMPNTPTQIGYGMTGIYADDSISAEHKAICATLMQSGGKVAWVDNESELDQVIALAGSSPAYFFLFIESMIASGVKMGMAEDKARLLAEQAALGAAQMVIQNQQLSVTELRQNVMSKGGTTARAVETFQQGGLVELVDKAMTNCVARAQEMAKTF
>CP034015.1|AZG74204.1|3810187_3810874_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTTIADRISIAQSRINQAAQNCSRSSGEISLLAVSKTKPISDIIAAYKAGQRQFGENYVQEGETKIIALQADYSDIEWHFIGPLQSNKTKIVAEYFDWMHTLSRDKIAQRLHEQRPSNKAPLNVCIQVNISQEDSKSGVNATDVAALALTIATLPHLKLRGLMAIPTATDDTQLQQQEFAQLKQLFDQLKQQYPSVDTLSMGMSGDMDIAIANGSTMVRIGSAIFGER
>CP034015.1|AZG74203.1|3809122_3810160_-|type-IV-pilus-twitching-motility-protein-PilT
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPALDHQAVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLARFRVNAFNQSRGAGAVFRTIPSEILSLEQLGAPDIFKKIASYPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIEDPIEFVHQNKQCLINQREVHKHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRVVDVFPEGEKSMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMSHGMQTLDQCLQTLVNRGLITREDAMQKSSNKQANF
>CP034015.1|AZG74202.1|3807998_3809111_-|PilT/PilU-family-type-4a-pilus-ATPase
MDVRPFLNIMVEKKASDLFITAGFPPSAKIDGELRQLSEERLTPEQSLVFVESLMSDIQKKEFHETSECNFAFAAKDLGRFRVSAFWQRESAGCVMRRIETQIPEVDDLKLPAILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNAHSRGHILTIEDPVEFVHNHRKSIITQREVGIDTDSFGAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRIMHLVPESKHNQLLFDLSLNLRGIVAQQLIPKSDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMSKSREQGMQTFDQALLDLYVEGEISYADALHHADSPNDLRLMIKLQNNEATSSGTLDGITLDMD
>CP034015.1|AZG74201.1|3806478_3807582_-|hypothetical-protein
MQLWQKVTVLSSLILFPFAASAVPVTDEVDIGGAVRVNYGWKDYDNNSKLEFELFRADVNYKSKDGLFASAQYRWYENMDVVHHAYMGYQFDEAQSVQVGVTQVPFGLLPYAAHSFWFGATYYLGFEDDYDAGIHYKNEQDGWRYDLAYFVNDEIGDGSNYDRYSFDAATTADSPYEEAGQINARIEREFTSGEVTHKLGGSLQYSQLDYIANAATVAGEDTNGLAAAAHWQLDWKQWQLQLQYIHYDYDIDNSERIALSAFQYPFEIAAEADVATVNVAKSVDVDWGPITNLNFYNDYSQVMASGPGLDDSIQNVTGVAITAGKFYSYVDWIAGKNMWFVDGAGVGIDNGDTSWHSRLNINVGFYF
>CP034015.1|AZG74200.1|3805834_3806368_-|glutathione-peroxidase
MIKYITAVGLLSLSSSALAASCPDYLNVEARKLHSEENINLCELTQGKAVLIVNTASHCGFTPQFEALEALHQQYADKGLVIIGFPSDDFFQEEKDEAKTADVCFINYGVTFTMVATSPVRGDNANSVFTYLGAKSAAPKWNFYKYVVSGDGQTVKEFSSRVKPDSDELKKAIEAVL
>CP034015.1|AZG75221.1|3804573_3805587_-|ferrochelatase
MARFSGLDKETGHKARGKTGVLLLNLGTPDAPTASAVRIYLAEFLADPRVVEIPKLIWMIILHGIILRIRPAKSAALYKQVWTEAGSPLLDISQRQQAKLAKHLQAQGYDASVHLAMRYGSPSTSRTLQAMHKQGVDNLVVLPLYPQYAAPTTGSAFDALAKELMKWRYIPALHFINTYHDNPDLIDALAASIQKDFDQHGKPQKLVMSYHGMPERNLHLGDPYYCFCLKTTRLVVEKLGLSEDDYVATFQSRFGKAKWLQPYTDVTIGSLPEKGITDIAVICPAFSADCLETLEEIKGENRHVFEDAGGKKFRYIECLNDNDDHINMMANLVKPFL
>CP034015.1|AZG74208.1|3813864_3814563_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MTANLPSSKKLMHTLAKQQIVLASGNKGKLAEFDQMLTAFNIEVLPQNKFNVSEVAETGTTFVENAIIKARHAAEITGKAAIADDSGIEVDALQGQPGIYSARYSGAGATETSNYLKLLDALQGEKLRSARFQCVLVYMRHAKDPTPIICQASWEGTINHAPQGDKGHGYDPIFIPQGFDCSAAELTGDQKNAHSHRGKALELLVSAMKAQGIITSNITSNITSNNTTDDHQ
>CP034015.1|AZG74209.1|3814563_3815703_+|radical-SAM-family-heme-chaperone-HemW
MTLQLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQQQYVDALLDDLKQDLAYVQGRKIHTIFIGGGTPSLFDASQIQRILEGAQALIPFEDDIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKEKLNLLGRIHNEDEAKVAAQKAKQADYLSFNLDLMHGLPNQSFDEAMHDIDTATALAPPHLSWYQLTIEPNTLFHSKPPQLPDDENLWQIYEQGQQRLAALGYEQYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKITLPDSNQIVRTVKIKHPKGYLAAEKYTFETTDVVEEDRPLEYLMNRLRLMTPIPKTEFEQRTGQPAEVVKAGMQKSIERGLLTETTTHWQLTSKGHMFVNDLLSQFI
>CP034015.1|AZG74210.1|3815891_3817748_+|DUF885-domain-containing-protein
MSIKTKITLVAVALSSLLSASAIANLHNMPQLSPQESTATSNQQTETEKANALFEAIFMENVMANPINQTYLGIKQDYGKWNDLTDAAADADLARIKKQLIRLTQLDETKLDQQAALSFELLKASLEHTISDDKWRYHTYPINQMYGVHSIVASFLINQHQITDESDAKAYISRLNAVPTLFSQLETSLEIRAKKHIIAPKFVFPYVISDSKNIISGAPFTETGKDSALWADATRKINKLDISDDKKQALLNDVKQALLTNVKPAYEQLITYTKSLEARADTKDGAWKLPDGEAFYNNALARTTTTDMSANTIHELGLTEVKRIHDEMRVIMKKVQFAGSLKEFFVFMRDDKQFYYPDTNEGKAAYITQAKSLIDTMESRLDEVFTIKPKAALVVQKVEAFREKSAGKAFYDQPAPDGSRPGTYYANLYKMKAMPKYQMEALAYHEGIPGHHMQIAIAQELQGIPKFRKFGGYTAYIEGWGLYSEYFPKEMGLYADPYSDFGRLSMELWRACRLVVDTGIHAKKWTREQSIAYYVDNTPNAESDAIKMVERHIVMPSQATAYKVGMIKILQLREQAKKELGSKFDIREFHTLILKNGPLPLDILEEQVTKWIKQVNLL
>CP034015.1|AZG74211.1|3818396_3819338_-|LysR-family-transcriptional-regulator
MLELLEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGNLLYLQGEELLRDAEQAVSSVHNLNDATRGVLKVGISQSFGTMHIIPALPAFMARHPDLELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCNFLLVASPGYIAQHGNISRPEQLVEHNCLVYQGEWHEHSMWQFKKGEDYCEIGVSGNFRVDNAPALKSAAVSGLGIVYLASYLMEDEIAQGTLVPLLPDWQLTHNLPLQAVYPRRKHLAPKVSAFIDFIKTHISSPPYWDAKFDHLYKLRK
>CP034015.1|AZG74212.1|3819767_3820580_-|DUF2884-family-protein
MTKQKLICGLALTSMLFTAGALTPAMAKMSINDEKCNVTLNYDVTVEPTSLQVSDNGAEKYRVELGQLYVDGKKVTLNDNQQKLLTQYSEELSRQVPDVIDLVGDVVSVATQAVNMALTPIFGEAAGAQIDKLMVGIQKRVDTMAYQQGDKFYLGSTETSIEQAFNHEFEQEMEQMVTNSMGSLMMTLGSQIMSSEGGTFEQKMNTFSQKMDNVGADIEKQLESQSKGLEQRANKVCDNFEELLVLESRTRQAIPELAPYTLAKLGDIKE
>CP034015.1|AZG74213.1|3820808_3821723_-|glutaminase
MPEQLLLQQAVDKVRSLLGKGKVAGYIPALACIDPSKIGIAVTTIDGQTIGAGDYLDPFSIQSISKVFSLTLALNLYTEDEIWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVIADLLQARLGAPKHRMLEVVRQLSQNTTISYDKVVADSEYQFSARNASIAYLMKSFGNFNGDVDTVLKSYFHYCALKMNCADLSRAMFYLANRGKTLDGDSLVSPVQTRQLNALLATSGLYDGAGEFAYRVGMPGKSGVGGGIIAVIPGDMSICVWSPELDVNGNSLAGTAMLEHLSQQLGRSIF
>CP034015.1|AZG74214.1|3821729_3822056_-|DUF469-domain-containing-protein
MAQNRSRRLRKKLRVDEFQELGFEINWTFDESVSEQDIDSLVDQFLVEVIEPRQLGFHGGGHKQWEGIIATQAIGKCTDEDTAAVSAFWKDKPVSNLEVSDLYDIWWG
>CP034015.1|AZG74215.1|3822090_3822807_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSDVTTAEFNEDGKYIRKIRSFVLREGRLTKGQSQAIEAHWPAMGLDYTPQALDLNQVFGRDANTVLEIGFGMGASLVQMAQAAPEQNFIGIEVHKPGIGACLGDAGEAQVTNLRVYHHDAMEVLEHSIADGSLERVQLFFPDPWHKKRHHKRRIVQAEFVQLIRRKLNIGGVFHMATDWENYSEHMLDIMNAAEGYKNQSTTGTVVERPDHRPLTKFEARGHRLGHGVWDIMFERTA
>CP034015.1|AZG74216.1|3823522_3824596_+|adenine-DNA-glycosylase
MKNLTPFSERIIAWYDLHGRKSLPWQINKTPYRVWVSEIMLQQTQVATVIPYYEKFMARFPSVIDLANAHQDEVLHLWTGLGYYARARNLHKAAQHIRDTFDGEFPTQFDDVVALSGIGKSTAGAILSLSLGQHHPILDGNVKRVLARHGAIAGWPGQKNVEQQLWQLTDTLTPIKDVEKFNQAMMDIGSSVCTRSKPNCAACPVAIDCLAQQSGHQSQYPGKKPKKITPEKSAFMVVLVNSSENTVKVQLIQRPPAGIWGGLWCFPQFEHQVELDDYLTLHNLTESEQGLAGFRHTFSHFHLDIKPILVELSPDLASGIMEQTSALWYNIEQPAKVGLAAATERILANLAVLFATH
>CP034015.1|AZG74217.1|3824630_3824909_+|oxidative-damage-protection-protein
MARTVQCLHLNKSADGLDFQLYPGELGKRIFDNISKEAWGLWQKKQTMLINEKKLSMMNVDDRKFLEEQMTNFLFEGKDVEIDGYVPPAEDE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034015_3	3.1\|3813739\|29\|CP034015\|CRISPRCasFinder	3813739-3813767	29	CP034015.1	660130-660158	2	0.931

1. spacer 3.1|3813739|29|CP034015|CRISPRCasFinder matches to position: 660130-660158, mismatch: 2, identity: 0.931

gagcgcactatccgtgtagcggcctagga	CRISPR spacer
gagcgcactatccgcgtagcggtctagga	Protospacer
**************.*******.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1580123 : 1587624

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZG72517.1\|1580123_1581791_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	2.7e-40	29.5
AZG72518.1\|1582052_1583306_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.0e-100	54.1
AZG72519.1\|1583421_1583871_+	transcriptional regulator NrdR	NA	NA	NA	NA
AZG72520.1\|1583936_1585082_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.2e-47	34.8
AZG72521.1\|1585145_1585805_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.3e-26	31.5
AZG72522.1\|1585920_1587024_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	7.4e-63	38.4
AZG72523.1\|1587147_1587624_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.6e-30	47.0

DBSCAN-SWA_2

2082316 : 2092189

Faustovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZG72885.1\|2082316_2083531_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	2.6e-32	30.8
AZG72886.1\|2083603_2083987_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.2e-52	79.0
AZG72887.1\|2084001_2084325_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.7e-20	40.2
AZG72888.1\|2084380_2084905_+	co-chaperone HscB	NA	NA	NA	NA
AZG72889.1\|2084973_2086833_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.5e-103	40.2
AZG72890.1\|2086841_2087177_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AZG72891.1\|2087348_2088245_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	1.6e-36	35.8
AZG72892.1\|2088422_2088854_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.7e-18	41.7
AZG72893.1\|2089660_2092189_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	8.2e-33	24.2

DBSCAN-SWA_3

2925470 : 2987897

Paenibacillus_phage(15.38%)

tRNA,transposase,integrase

attL 2917447:2917476|attR 2941408:2941437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2917447:2917476	attL	NA	NA	NA	NA
AZG73520.1\|2925470_2926592_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AZG73521.1\|2926588_2927509_-	hypothetical protein	NA	NA	NA	NA
AZG73522.1\|2927791_2928994_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.5e-109	48.9
AZG73523.1\|2928979_2929072_+	CRISPR-associated DxTHG motif protein	NA	NA	NA	NA
AZG73524.1\|2929334_2930666_-	hypothetical protein	NA	NA	NA	NA
AZG73525.1\|2930934_2931270_-	hypothetical protein	NA	NA	NA	NA
AZG73526.1\|2931377_2932388_-	S9 family peptidase	NA	NA	NA	NA
AZG73527.1\|2933689_2935363_-	hypothetical protein	NA	NA	NA	NA
AZG73528.1\|2935349_2936540_-\|integrase	site-specific integrase	Q774Z5	Bordetella_phage	9.2e-19	26.0
AZG73529.1\|2936747_2936987_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZG73530.1\|2937143_2937653_+	hypothetical protein	NA	NA	NA	NA
AZG73531.1\|2937810_2938221_-	DUF2384 domain-containing protein	NA	NA	NA	NA
AZG73532.1\|2938676_2938982_+	hypothetical protein	NA	NA	NA	NA
AZG73533.1\|2939225_2939567_-	hypothetical protein	NA	NA	NA	NA
AZG73534.1\|2939992_2941324_-	hypothetical protein	NA	NA	NA	NA
AZG73535.1\|2941670_2942419_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.0e-16	33.9
2941408:2941437	attR	NA	NA	NA	NA
AZG73536.1\|2942678_2943581_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZG73537.1\|2943795_2944455_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	7.8e-36	45.4
AZG73538.1\|2944520_2944910_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.7e-18	38.6
AZG73539.1\|2944929_2945286_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
AZG73540.1\|2945282_2945588_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
AZG73541.1\|2945581_2945920_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
AZG73542.1\|2946420_2947707_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-94	42.9
AZG73543.1\|2947725_2948100_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.0e-08	37.4
AZG73544.1\|2948092_2949424_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	3.7e-77	38.6
AZG73545.1\|2949432_2950077_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AZG73546.1\|2950088_2952737_-	DUF87 domain-containing protein	A0A218M9A2	Mycobacterium_phage	3.4e-82	47.2
AZG73547.1\|2953010_2953508_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
AZG73548.1\|2953686_2954802_+	alanine dehydrogenase	NA	NA	NA	NA
AZG73549.1\|2955000_2957268_-	EAL domain-containing protein	G3MA91	Bacillus_virus	6.5e-13	30.2
AZG73550.1\|2957490_2958705_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
AZG73551.1\|2959008_2960274_-	sugar MFS transporter	NA	NA	NA	NA
AZG73552.1\|2960439_2962074_-	alpha-glucosidase	NA	NA	NA	NA
AZG73553.1\|2962580_2965298_+	TonB-dependent receptor	NA	NA	NA	NA
AZG73554.1\|2965414_2966938_+	tryptophan 7-halogenase	Q58MD8	Prochlorococcus_phage	3.6e-52	30.3
AZG73555.1\|2967006_2968926_+	alpha-amylase	NA	NA	NA	NA
AZG75186.1\|2969102_2971013_+	alpha-amylase	NA	NA	NA	NA
AZG73556.1\|2971342_2971774_-	hypothetical protein	NA	NA	NA	NA
AZG73557.1\|2973827_2975141_-	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA
AZG73558.1\|2975496_2975739_-	DUF2492 family protein	NA	NA	NA	NA
AZG73559.1\|2976010_2976235_-	hypothetical protein	NA	NA	NA	NA
AZG73560.1\|2976260_2977118_-	hypothetical protein	NA	NA	NA	NA
AZG73561.1\|2977597_2977852_+	hypothetical protein	NA	NA	NA	NA
AZG73562.1\|2978142_2978739_+\|tRNA	tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY	NA	NA	NA	NA
AZG73563.1\|2978988_2979186_+	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA
AZG73564.1\|2981211_2981976_+	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	1.2e-56	50.4
AZG73565.1\|2982671_2983421_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.0e-16	33.9
AZG73566.1\|2983829_2984315_+	hypothetical protein	NA	NA	NA	NA
AZG73567.1\|2984355_2985123_+	hypothetical protein	NA	NA	NA	NA
AZG73568.1\|2985161_2985821_+	hypothetical protein	NA	NA	NA	NA
AZG73569.1\|2985859_2986270_+	hypothetical protein	NA	NA	NA	NA
AZG73570.1\|2986469_2987897_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3740722 : 3785393

Enterobacteria_phage(30.0%)

transposase,integrase

attL 3750111:3750126|attR 3763168:3763183

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZG74145.1\|3740722_3742318_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.1e-70	34.2
AZG74146.1\|3742401_3742749_-\|transposase	transposase	S5VXZ8	Leptospira_phage	1.3e-21	52.7
AZG74147.1\|3742742_3743072_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AZG74148.1\|3743349_3743610_-	DUF2442 domain-containing protein	NA	NA	NA	NA
AZG74149.1\|3743572_3743809_-	DUF4160 domain-containing protein	NA	NA	NA	NA
AZG74150.1\|3743892_3744075_-	hypothetical protein	NA	NA	NA	NA
AZG74151.1\|3744071_3744584_-	hypothetical protein	NA	NA	NA	NA
AZG74152.1\|3744827_3745097_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
AZG74153.1\|3745089_3745344_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
AZG75219.1\|3745856_3746075_+	hypothetical protein	NA	NA	NA	NA
AZG74154.1\|3746354_3746609_+	hypothetical protein	NA	NA	NA	NA
AZG74155.1\|3746867_3747194_+	hypothetical protein	NA	NA	NA	NA
AZG74156.1\|3748269_3749583_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
AZG74157.1\|3749582_3749864_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
3750111:3750126	attL	NA	NA	NA	NA
AZG75220.1\|3750374_3750566_+	hypothetical protein	NA	NA	NA	NA
AZG74158.1\|3750770_3751061_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZG74159.1\|3751063_3752392_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
AZG74160.1\|3752874_3753144_-	hypothetical protein	NA	NA	NA	NA
AZG74161.1\|3754038_3754515_+	hypothetical protein	NA	NA	NA	NA
AZG74162.1\|3754514_3756113_+\|integrase	site-specific integrase	NA	NA	NA	NA
AZG74163.1\|3756105_3758997_+\|integrase	site-specific integrase	NA	NA	NA	NA
AZG74164.1\|3759003_3760251_+	hypothetical protein	NA	NA	NA	NA
AZG74165.1\|3760606_3761773_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.5e-29	27.9
AZG74166.1\|3761899_3763081_-	J domain-containing protein	NA	NA	NA	NA
AZG74167.1\|3763819_3764368_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-51	56.2
3763168:3763183	attR	NA	NA	NA	NA
AZG74168.1\|3764364_3765243_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.5e-34	36.6
AZG74169.1\|3765245_3766124_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.6e-107	66.3
AZG74170.1\|3766207_3767287_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.1e-94	51.2
AZG74171.1\|3767707_3769057_-	phosphoglucosamine mutase	NA	NA	NA	NA
AZG74172.1\|3769508_3770396_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	2.4e-56	47.8
AZG74173.1\|3770445_3771519_-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
AZG74174.1\|3771666_3772746_-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
AZG74175.1\|3772978_3774145_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	2.6e-114	55.8
AZG74176.1\|3774166_3774622_-	glycosyltransferase	NA	NA	NA	NA
AZG74177.1\|3774618_3775101_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
AZG74178.1\|3775290_3775503_-	hypothetical protein	NA	NA	NA	NA
AZG74179.1\|3775725_3776802_-	glycosyltransferase	NA	NA	NA	NA
AZG74180.1\|3776779_3778069_-	hypothetical protein	NA	NA	NA	NA
AZG74181.1\|3778139_3779201_-	glycosyltransferase	NA	NA	NA	NA
AZG74182.1\|3779227_3780832_-	hypothetical protein	A0A1V0SKD7	Klosneuvirus	4.3e-19	34.5
AZG74183.1\|3780990_3782430_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
AZG74184.1\|3782419_3783367_-	glycosyltransferase	NA	NA	NA	NA
AZG74185.1\|3783373_3783931_-	acyltransferase	NA	NA	NA	NA
AZG74186.1\|3783962_3785393_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

4497897 : 4559878

Leptospira_phage(50.0%)

tRNA,transposase,protease,integrase

attL 4521804:4521819|attR 4566702:4566717

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZG74764.1\|4497897_4498476_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AZG74765.1\|4498699_4499755_-	alpha/beta hydrolase	NA	NA	NA	NA
AZG74766.1\|4499861_4500323_+	DUF386 domain-containing protein	NA	NA	NA	NA
AZG74767.1\|4500727_4501651_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AZG74768.1\|4501733_4502138_-	DUF1850 domain-containing protein	NA	NA	NA	NA
AZG75259.1\|4502137_4504165_-	TRAP transporter permease	NA	NA	NA	NA
AZG74769.1\|4504297_4505251_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
AZG74770.1\|4505592_4506870_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
AZG74771.1\|4507099_4507744_+	DsbA family protein	NA	NA	NA	NA
AZG74772.1\|4507938_4508616_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
AZG74773.1\|4508858_4510793_+	radical SAM protein	NA	NA	NA	NA
AZG74774.1\|4511350_4511914_-	hypothetical protein	NA	NA	NA	NA
AZG74775.1\|4512019_4513150_-	hypothetical protein	U5N3F3	Enterobacteria_phage	4.6e-84	46.1
AZG74776.1\|4513941_4514508_-	sugar O-acetyltransferase	NA	NA	NA	NA
AZG74777.1\|4514924_4515359_+	cell division protein DedD	A0MN56	Thermus_phage	1.3e-26	45.1
AZG74778.1\|4515605_4516466_+	NAD(P)-dependent oxidoreductase	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	2.2e-06	28.6
AZG74779.1\|4516539_4516980_+	hypothetical protein	NA	NA	NA	NA
AZG74780.1\|4517256_4518264_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZG74781.1\|4518689_4519151_-	DUF1311 domain-containing protein	NA	NA	NA	NA
AZG74782.1\|4519672_4520140_-	hypothetical protein	NA	NA	NA	NA
AZG74783.1\|4520536_4521115_+	hypothetical protein	NA	NA	NA	NA
AZG74784.1\|4521211_4521886_+	hypothetical protein	NA	NA	NA	NA
4521804:4521819	attL	NA	NA	NA	NA
AZG74785.1\|4522027_4522996_-	hypothetical protein	NA	NA	NA	NA
AZG74786.1\|4523125_4523626_-	hypothetical protein	NA	NA	NA	NA
AZG74787.1\|4523622_4523928_-	hypothetical protein	NA	NA	NA	NA
AZG74788.1\|4524108_4525649_-\|transposase	IS3 family transposase	NA	NA	NA	NA
AZG74789.1\|4525977_4528662_-	TonB-dependent receptor	NA	NA	NA	NA
AZG74790.1\|4528746_4531581_-	hypothetical protein	NA	NA	NA	NA
AZG74791.1\|4531989_4532196_-	hypothetical protein	NA	NA	NA	NA
AZG74792.1\|4532501_4533710_+	potassium/proton antiporter	NA	NA	NA	NA
AZG74793.1\|4533771_4534989_-	M56 family peptidase	NA	NA	NA	NA
AZG74794.1\|4534988_4535363_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
AZG74795.1\|4535783_4536041_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZG74796.1\|4536040_4537267_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
AZG74797.1\|4537431_4540620_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.8e-70	24.4
AZG75260.1\|4540636_4541602_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AZG75261.1\|4542051_4542462_-	hypothetical protein	NA	NA	NA	NA
AZG74798.1\|4542506_4542683_-	DUF3012 domain-containing protein	NA	NA	NA	NA
AZG74799.1\|4542847_4543213_-	STAS/SEC14 domain-containing protein	NA	NA	NA	NA
AZG74800.1\|4544129_4544543_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
AZG74801.1\|4545740_4546454_-	hypothetical protein	NA	NA	NA	NA
AZG74802.1\|4546440_4546953_-	hypothetical protein	NA	NA	NA	NA
AZG74803.1\|4549612_4550122_+	hypothetical protein	NA	NA	NA	NA
AZG74804.1\|4550173_4551460_-\|transposase	IS4 family transposase	NA	NA	NA	NA
AZG74805.1\|4552478_4552778_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZG74806.1\|4552774_4553119_+\|transposase	transposase	S5VXZ8	Leptospira_phage	3.1e-20	45.2
AZG74807.1\|4553209_4554712_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.9e-77	38.6
AZG74808.1\|4554715_4557511_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
AZG74809.1\|4558483_4559878_-\|integrase	site-specific integrase	NA	NA	NA	NA
4566702:4566717	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection