CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034090	Proteus mirabilis strain PmSC1111 chromosome, complete genome	0 crisprs	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,RT,DinG	0	0	12	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1432 : 10276

Caulobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH04175.1\|1432_2578_-	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	9.2e-32	27.4
AZH04176.1\|2970_3555_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	4.2e-17	30.2
AZH04177.1\|3555_4692_+	tellurium resistance protein TerA	NA	NA	NA	NA
AZH04178.1\|4716_5172_+	Tellurium resistance protein TerB	NA	NA	NA	NA
AZH04179.1\|5206_6232_+	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	1.0e-74	47.9
AZH04180.1\|6299_6878_+	TerD family protein	K4JRX3	Caulobacter_phage	2.4e-33	41.5
AZH04181.1\|6954_7530_+	TerD family protein	K4JRX3	Caulobacter_phage	1.2e-27	40.3
AZH04182.1\|7626_8307_-	HAD-IB family hydrolase	NA	NA	NA	NA
AZH04183.1\|8707_10276_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.2e-11	33.7

DBSCAN-SWA_2

272693 : 324708

Morganella_phage(22.64%)

head,holin,integrase,terminase

attL 273789:273845|attR 321601:321657

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH04390.1\|272693_273566_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	5.7e-34	36.8
273789:273845	attL	NA	NA	NA	NA
AZH04391.1\|273854_275012_-\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	4.0e-176	74.9
AZH04392.1\|275245_275440_-	hypothetical protein	A0A1P8DTH3	Proteus_phage	5.7e-27	85.9
AZH04393.1\|276058_276277_-	hypothetical protein	NA	NA	NA	NA
AZH04394.1\|276273_276609_-	DUF2591 domain-containing protein	E9NID9	Enterobacter_phage	3.1e-12	38.8
AZH04395.1\|276932_277286_-	hypothetical protein	NA	NA	NA	NA
AZH04396.1\|277412_277607_-	hypothetical protein	NA	NA	NA	NA
AZH04397.1\|277642_277828_-	hook protein	NA	NA	NA	NA
AZH04398.1\|278306_279005_-	exonuclease	A0A2R2Z325	Escherichia_phage	2.0e-74	57.3
AZH04399.1\|279001_279886_-	recombinase RecT	A0A2L1IV84	Escherichia_phage	1.0e-94	62.2
AZH04400.1\|279882_280134_-	hypothetical protein	A0A1P8DTG3	Proteus_phage	1.6e-37	94.0
AZH04401.1\|280130_280406_-	hypothetical protein	NA	NA	NA	NA
AZH04402.1\|280628_281570_-	cell envelope biogenesis protein TolA	A0A2I7QK72	Vibrio_phage	2.3e-20	46.6
AZH04403.1\|281674_281995_-	hypothetical protein	NA	NA	NA	NA
AZH04404.1\|281997_282345_-	hypothetical protein	NA	NA	NA	NA
AZH04405.1\|282513_283068_+	hypothetical protein	NA	NA	NA	NA
AZH04406.1\|283083_283305_-	hypothetical protein	A0A1P8DTK1	Proteus_phage	5.1e-08	90.9
AZH04407.1\|283749_284166_-	hypothetical protein	NA	NA	NA	NA
AZH04408.1\|284158_284623_-	hypothetical protein	NA	NA	NA	NA
AZH04409.1\|284698_285424_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	8.9e-41	42.0
AZH04410.1\|285528_285756_+	helix-turn-helix domain-containing protein	E5AGE7	Erwinia_phage	6.0e-20	67.6
AZH04411.1\|285858_286206_+	hypothetical protein	A0A1P8DTF0	Proteus_phage	5.8e-06	34.3
AZH04412.1\|286471_286651_+	hypothetical protein	G9L679	Escherichia_phage	2.9e-09	59.6
AZH04413.1\|286643_287741_+	DNA replication protein	E5AGE9	Erwinia_phage	9.5e-103	56.5
AZH04414.1\|287740_289117_+	replicative DNA helicase	E5AGF0	Erwinia_phage	4.2e-156	58.3
AZH04415.1\|289319_289541_+	MarR family transcriptional regulator	NA	NA	NA	NA
AZH04416.1\|289527_289767_+	hypothetical protein	NA	NA	NA	NA
AZH04417.1\|289763_290072_+	hypothetical protein	NA	NA	NA	NA
AZH04418.1\|290096_290306_+	hypothetical protein	A0A1X9Y878	Proteus_phage	1.2e-22	70.3
AZH04419.1\|290315_290759_+	hypothetical protein	A0A1P8DTD8	Proteus_phage	4.2e-33	91.9
AZH04420.1\|290870_291464_+	recombination protein NinG	A0A1P8DTE0	Proteus_phage	1.4e-92	92.3
AZH04421.1\|291616_291808_+	hypothetical protein	A0A1P8DTD3	Proteus_phage	6.8e-25	87.3
AZH04422.1\|291804_292443_+	hypothetical protein	Q8HA89	Salmonella_phage	3.9e-32	35.9
AZH04423.1\|293011_293401_+	hypothetical protein	S4TRS4	Salmonella_phage	4.2e-13	35.0
AZH04424.1\|293397_293685_+\|holin	phage holin family protein	NA	NA	NA	NA
AZH04425.1\|293677_294082_+	structural protein	A0A2I7RXE2	Vibrio_phage	6.9e-27	50.8
AZH04426.1\|294078_294459_+	hypothetical protein	NA	NA	NA	NA
AZH04427.1\|294346_294604_+	peptidase	Q8SBD8	Shigella_phage	4.4e-11	44.0
AZH04428.1\|294950_295535_+	hypothetical protein	Q3LZN7	Bacteriophage	2.0e-22	48.2
AZH04429.1\|295531_295738_+	hypothetical protein	NA	NA	NA	NA
AZH04430.1\|295920_296529_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	2.2e-64	69.1
AZH04431.1\|296531_298016_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	7.9e-270	88.7
AZH04432.1\|298017_299394_+	DUF4055 domain-containing protein	A0A1W6JNV0	Morganella_phage	9.8e-214	79.5
AZH04433.1\|299402_300467_+\|head	phage head morphogenesis protein	A0A1W6JNT7	Morganella_phage	2.4e-103	51.4
AZH04434.1\|300541_301228_+	hypothetical protein	A0A1W6JNU9	Morganella_phage	1.2e-74	81.5
AZH04435.1\|301233_302184_+	hypothetical protein	A0A1W6JNV5	Morganella_phage	7.8e-154	87.5
AZH04436.1\|302226_302604_+	hypothetical protein	A0A1W6JP09	Morganella_phage	5.8e-44	71.2
AZH04437.1\|302605_302947_+	hypothetical protein	A0A1W6JNW7	Morganella_phage	3.1e-52	80.5
AZH04438.1\|302949_303318_+	HK97 gp10 family phage protein	A0A1W6JNX7	Morganella_phage	7.9e-54	86.1
AZH04439.1\|303314_303686_+	hypothetical protein	A0A1W6JNU7	Morganella_phage	3.3e-47	70.7
AZH04440.1\|303759_304005_+	hypothetical protein	NA	NA	NA	NA
AZH04441.1\|304055_304811_+	DNA breaking-rejoining protein	A0A1W6JNT1	Morganella_phage	9.7e-107	78.9
AZH04442.1\|304860_305553_+	hypothetical protein	A0A1W6JNX2	Morganella_phage	3.4e-90	71.5
AZH04443.1\|305573_306392_-	ORF6N domain-containing protein	G9L689	Escherichia_phage	8.8e-37	62.3
AZH07731.1\|306388_307144_-	DNA-binding protein	A0A2H4JDP7	uncultured_Caudovirales_phage	2.0e-35	43.7
AZH04444.1\|307217_307385_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	4.0e-05	46.3
AZH04445.1\|307504_307837_+	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	8.5e-15	80.9
AZH04446.1\|307892_308303_+	hypothetical protein	A0A286S1N7	Klebsiella_phage	1.1e-19	45.3
AZH04447.1\|308329_308875_+	hypothetical protein	NA	NA	NA	NA
AZH04448.1\|308943_312285_+	tape measure protein	A0A1W6JNU2	Morganella_phage	4.4e-167	43.5
AZH04449.1\|312413_312914_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	4.9e-22	40.7
AZH04450.1\|313007_313484_+	hypothetical protein	F1C5F0	Cronobacter_phage	2.5e-60	73.0
AZH04451.1\|313483_313954_+	DUF1833 domain-containing protein	F1C5F1	Cronobacter_phage	6.8e-42	51.9
AZH04452.1\|313950_314343_+	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	2.5e-45	59.5
AZH04453.1\|314329_316798_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	6.0e-254	52.2
AZH07732.1\|316828_317638_-	phage antirepressor Ant	I6S627	Salmonella_phage	1.1e-68	47.6
AZH04454.1\|317708_317885_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	4.2e-13	67.3
AZH04455.1\|317991_318318_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.2e-06	41.3
AZH04456.1\|318373_318754_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AZH04457.1\|318842_321131_+	SGNH/GDSL hydrolase family protein	A0A291AXF7	Shigella_phage	1.0e-45	56.1
AZH04458.1\|321195_321426_-	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	4.8e-33	96.1
AZH04459.1\|322121_322817_-	type 1 fimbrial protein	NA	NA	NA	NA
321601:321657	attR	NA	NA	NA	NA
AZH04460.1\|323219_323891_+	hypothetical protein	NA	NA	NA	NA
AZH04461.1\|324081_324708_-	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	1.3e-11	31.6

DBSCAN-SWA_3

825632 : 844578

Escherichia_phage(28.57%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH04852.1\|825632_826448_+	antitermination protein	M9NZB0	Enterobacteria_phage	2.1e-54	43.4
AZH04853.1\|826830_827130_+\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.9e-21	51.0
AZH04854.1\|827132_827537_+	structural protein	A0A0A0RQM4	Escherichia_phage	1.7e-25	47.9
AZH04855.1\|828018_828531_+	hypothetical protein	NA	NA	NA	NA
AZH04856.1\|828539_830027_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	1.4e-77	35.7
AZH04857.1\|830037_830490_+	hypothetical protein	NA	NA	NA	NA
AZH04858.1\|830548_831007_+	hypothetical protein	Q6IWV4	Burkholderia_phage	5.6e-25	47.7
AZH04859.1\|831089_833393_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	1.1e-15	23.3
AZH04860.1\|833395_833884_+	hypothetical protein	NA	NA	NA	NA
AZH04861.1\|833896_834217_+	hypothetical protein	NA	NA	NA	NA
AZH04862.1\|834185_834998_+	hypothetical protein	Q6IWQ0	Burkholderia_phage	9.0e-42	39.2
AZH04863.1\|835000_835693_+	hypothetical protein	A1Z003	Burkholderia_virus	1.6e-34	37.1
AZH04864.1\|835689_836034_+	hypothetical protein	NA	NA	NA	NA
AZH04865.1\|836026_837214_+	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	1.4e-72	37.9
AZH04866.1\|837210_837867_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	6.6e-35	39.4
AZH04867.1\|839324_839504_-	GhoT/OrtT family toxin	NA	NA	NA	NA
AZH04868.1\|840072_840615_+	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	3.2e-19	34.7
AZH04869.1\|840730_841507_-	diguanylate cyclase	A0A077SK59	Escherichia_phage	5.1e-42	39.8
AZH04870.1\|841510_842128_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.3e-88	67.8
AZH04871.1\|842139_844578_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.0e-261	54.5

DBSCAN-SWA_4

1378607 : 1388599

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH05345.1\|1378607_1381052_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.3e-220	50.4
AZH05346.1\|1381063_1381681_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.2e-72	58.6
AZH05347.1\|1381682_1382543_+	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	3.7e-25	35.5
AZH05348.1\|1382682_1383294_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.3e-28	39.1
AZH05349.1\|1383346_1383808_-	nucleoside deaminase	S4VYZ2	Pandoravirus	7.0e-15	34.6
AZH05350.1\|1383807_1384494_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
AZH05351.1\|1384829_1386530_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
AZH05352.1\|1386541_1388599_+	K(+)-transporting ATPase subunit B	E4ZFI9	Streptococcus_phage	6.3e-31	26.1

DBSCAN-SWA_5

1648290 : 1664938

Salmonella_phage(12.5%)

capsid,tail,lysis,portal,terminase,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH05569.1\|1648290_1648689_-	hypothetical protein	A0A059VK01	Pseudomonas_phage	9.2e-32	47.7
AZH05570.1\|1648720_1649026_-	hypothetical protein	NA	NA	NA	NA
AZH05571.1\|1649037_1649619_-	hypothetical protein	Q7Y3Z7	Yersinia_phage	2.4e-52	50.0
AZH05572.1\|1649618_1650215_-	hypothetical protein	S4TSP7	Salmonella_phage	4.6e-51	52.8
AZH05573.1\|1650215_1653491_-\|tail	phage tail tape measure protein	B7SE05	Pseudomonas_virus	6.4e-54	45.6
AZH05574.1\|1653617_1653809_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
AZH05575.1\|1653833_1654112_-	DUF4035 domain-containing protein	NA	NA	NA	NA
AZH05576.1\|1654108_1654525_-	hypothetical protein	NA	NA	NA	NA
AZH05577.1\|1654589_1655255_-	hypothetical protein	NA	NA	NA	NA
AZH05578.1\|1655264_1655606_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AZH05579.1\|1655611_1656085_-	hypothetical protein	A0A0R6PHU8	Moraxella_phage	1.9e-12	31.5
AZH05580.1\|1656074_1656404_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AZH05581.1\|1656403_1656703_-	hypothetical protein	K7PKV5	Enterobacterial_phage	2.8e-33	64.3
AZH05582.1\|1656741_1657908_-\|capsid	phage major capsid protein	F1C582	Cronobacter_phage	5.6e-170	79.8
AZH05583.1\|1657911_1658580_-\|head,protease	HK97 family phage prohead protease	K7PM91	Enterobacterial_phage	1.1e-82	65.3
AZH05584.1\|1658597_1659866_-\|portal	phage portal protein	Q77W97	Enterobacteria_phage	5.1e-201	80.2
AZH05585.1\|1659865_1661599_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	6.9e-148	46.5
AZH05586.1\|1661552_1662020_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.5e-44	59.7
AZH05587.1\|1662143_1662356_-	hypothetical protein	A0A1W6JP16	Morganella_phage	1.4e-07	44.8
AZH05588.1\|1662358_1662697_-	HNH endonuclease	F1C587	Cronobacter_phage	1.6e-40	67.9
AZH05589.1\|1663594_1664056_-\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	3.7e-24	47.6
AZH05590.1\|1664198_1664669_-	lysozyme	A0A1W6JNW4	Morganella_phage	7.5e-49	60.5
AZH05591.1\|1664668_1664938_-	hypothetical protein	A0A2H4FNF0	Salmonella_phage	4.6e-19	53.5

DBSCAN-SWA_6

1669242 : 1680357

Morganella_phage(28.57%)

integrase

attL 1664465:1664478|attR 1679950:1679963

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1664465:1664478	attL	NA	NA	NA	NA
AZH05597.1\|1669242_1669455_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	7.6e-25	75.7
AZH05598.1\|1669797_1670196_-	antitermination protein	Q8W638	Enterobacteria_phage	1.0e-30	55.0
AZH05599.1\|1670223_1671249_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	2.8e-88	47.6
AZH05600.1\|1671248_1671956_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	5.6e-56	51.7
AZH05601.1\|1672127_1673219_-	replication protein	H2DE83	Erwinia_phage	8.2e-30	55.3
AZH05602.1\|1673231_1673411_-	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	1.1e-11	55.2
AZH05603.1\|1673400_1673610_-	hypothetical protein	NA	NA	NA	NA
AZH05604.1\|1673699_1674158_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.9e-26	50.8
AZH05605.1\|1674242_1674482_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	3.0e-14	54.8
AZH05606.1\|1674585_1675068_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	3.7e-11	51.4
AZH05607.1\|1675510_1675693_+	hypothetical protein	NA	NA	NA	NA
AZH05608.1\|1675716_1676091_+	hypothetical protein	Q8HAA1	Salmonella_phage	3.2e-42	71.4
AZH05609.1\|1676156_1676984_+	DUF2303 family protein	A0A2R2Z323	Escherichia_phage	5.5e-79	56.6
AZH05610.1\|1677040_1677571_+	HD family hydrolase	A0A1W6JP41	Morganella_phage	5.7e-53	58.6
AZH05611.1\|1677632_1677875_+	excisionase	NA	NA	NA	NA
AZH05612.1\|1677855_1678983_+\|integrase	integrase	O21925	Phage_21	1.4e-125	60.3
AZH05613.1\|1679103_1680357_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.6e-21	92.6
1679950:1679963	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1792820 : 1846175

Tupanvirus(16.67%)

transposase,tRNA,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH07759.1\|1792820_1794563_+\|protease	Lon protease family protein	NA	NA	NA	NA
AZH05714.1\|1794646_1795165_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AZH05715.1\|1795472_1795643_-	ribosome modulation factor	NA	NA	NA	NA
AZH05716.1\|1796131_1796536_-	ASCH domain-containing protein	NA	NA	NA	NA
AZH05717.1\|1796623_1797196_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AZH05718.1\|1797195_1798848_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AZH05719.1\|1798840_1800130_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AZH05720.1\|1800222_1802154_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.3e-50	28.7
AZH05721.1\|1802160_1804275_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AZH05722.1\|1804384_1805527_+	MOSC domain-containing protein	NA	NA	NA	NA
AZH05723.1\|1805793_1806345_-	cell division protein ZapC	NA	NA	NA	NA
AZH05724.1\|1806559_1807570_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
AZH05725.1\|1809122_1811738_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.7e-21	21.6
AZH05726.1\|1812079_1813294_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.6e-42	31.7
AZH05727.1\|1813308_1813500_-	hypothetical protein	NA	NA	NA	NA
AZH05728.1\|1813573_1814974_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	6.9e-82	37.6
AZH07760.1\|1815318_1816431_+	porin	Q1MVN1	Enterobacteria_phage	1.3e-96	51.3
AZH05729.1\|1816783_1817974_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AZH07761.1\|1818042_1818261_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AZH05730.1\|1818398_1819361_-	hypothetical protein	NA	NA	NA	NA
AZH05731.1\|1820253_1820868_-	DUF1963 domain-containing protein	NA	NA	NA	NA
AZH05732.1\|1824471_1825680_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	5.6e-189	81.0
AZH05733.1\|1826262_1826655_-	thioredoxin	NA	NA	NA	NA
AZH05734.1\|1826651_1827923_-	hypothetical protein	NA	NA	NA	NA
AZH05735.1\|1827946_1828909_-	hypothetical protein	NA	NA	NA	NA
AZH05736.1\|1828912_1830487_-	DUF4150 domain-containing protein	NA	NA	NA	NA
AZH05737.1\|1830487_1831513_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA
AZH05738.1\|1831515_1832571_-	DUF2169 domain-containing protein	NA	NA	NA	NA
AZH05739.1\|1832585_1833116_-	hypothetical protein	NA	NA	NA	NA
AZH05740.1\|1833118_1835269_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
AZH05741.1\|1835352_1835871_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
AZH05742.1\|1837768_1838269_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AZH05743.1\|1838289_1839768_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AZH07762.1\|1839773_1840205_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AZH05744.1\|1840212_1841988_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AZH05745.1\|1841951_1842989_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AZH07763.1\|1842993_1844262_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AZH05746.1\|1844263_1844815_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AZH05747.1\|1844807_1846175_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_8

2079223 : 2127475

Cronobacter_phage(17.95%)

tRNA,lysis,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH07770.1\|2079223_2080891_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	1.0e-286	85.0
AZH05936.1\|2081135_2081276_+	hypothetical protein	A0A1P8DTI0	Proteus_phage	4.7e-15	89.1
AZH05937.1\|2081769_2082312_+	uroepithelial cell adherence major pilin UcaA	NA	NA	NA	NA
AZH05938.1\|2082377_2083103_+	molecular chaperone	NA	NA	NA	NA
AZH05939.1\|2083112_2085647_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AZH05940.1\|2085656_2086739_+	type 1 fimbrial protein	NA	NA	NA	NA
AZH05941.1\|2086839_2087145_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZH05942.1\|2087845_2088106_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	1.9e-17	57.4
AZH05943.1\|2088155_2088770_-	hypothetical protein	NA	NA	NA	NA
AZH05944.1\|2088771_2089140_-	hypothetical protein	NA	NA	NA	NA
AZH05945.1\|2089133_2093327_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	1.7e-301	54.5
AZH05946.1\|2093378_2093966_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	1.4e-57	59.9
AZH05947.1\|2093962_2094673_-	peptidase P60	A0A1P8DTI6	Proteus_phage	1.2e-85	61.2
AZH05948.1\|2094669_2095413_-\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	7.6e-88	59.4
AZH05949.1\|2095409_2095751_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	9.0e-28	50.0
AZH05950.1\|2095894_2096095_+	hypothetical protein	NA	NA	NA	NA
AZH05951.1\|2096114_2096405_-	hypothetical protein	NA	NA	NA	NA
AZH05952.1\|2096416_2099347_-\|tail	phage tail tape measure protein	A0A0K0VLY2	Klebsiella_phage	3.1e-132	34.9
AZH05953.1\|2099407_2100229_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	6.2e-22	51.9
AZH05954.1\|2100352_2101495_-	hypothetical protein	NA	NA	NA	NA
AZH05955.1\|2101617_2102352_-	hypothetical protein	A0A0P0ZD96	Stx2-converting_phage	1.3e-66	56.7
AZH05956.1\|2102428_2103001_-	hypothetical protein	H6WRU8	Salmonella_phage	4.6e-32	58.4
AZH05957.1\|2103326_2104046_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZH05958.1\|2104101_2104911_-	hypothetical protein	A0A0M4R2T6	Salmonella_phage	1.8e-21	33.3
AZH05959.1\|2104917_2105151_-	hypothetical protein	NA	NA	NA	NA
AZH05960.1\|2105376_2105664_-	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	6.9e-13	49.3
AZH05961.1\|2105678_2105984_-	hypothetical protein	I6PDG2	Cronobacter_phage	6.6e-22	55.4
AZH05962.1\|2106035_2106692_-\|tail	phage tail protein	G8C7Q3	Escherichia_phage	5.6e-58	56.7
AZH05963.1\|2106736_2107138_-	hypothetical protein	NA	NA	NA	NA
AZH05964.1\|2107134_2107716_-	hypothetical protein	G8C7Q1	Escherichia_phage	3.5e-48	52.1
AZH05965.1\|2107717_2108068_-	hypothetical protein	I6PD77	Cronobacter_phage	1.2e-19	42.5
AZH05966.1\|2108070_2108550_-	hypothetical protein	G8C7P9	Escherichia_phage	3.8e-32	47.7
AZH05967.1\|2108589_2108874_-	hypothetical protein	NA	NA	NA	NA
AZH05968.1\|2108876_2109830_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.3e-126	71.2
AZH05969.1\|2109843_2110605_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.5e-67	59.3
AZH05970.1\|2110716_2111838_-	hypothetical protein	I6PD76	Cronobacter_phage	1.8e-104	51.2
AZH05971.1\|2111834_2113205_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	9.0e-119	48.8
AZH05972.1\|2113204_2114692_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	5.9e-265	89.0
AZH05973.1\|2114694_2115303_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	2.2e-64	69.1
AZH05974.1\|2115485_2115692_-	hypothetical protein	NA	NA	NA	NA
AZH05975.1\|2115688_2116273_-	hypothetical protein	Q3LZN7	Bacteriophage	2.0e-22	48.2
AZH05976.1\|2116620_2117082_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	4.4e-09	34.1
AZH05977.1\|2117224_2117695_-	lysozyme	A0A1W6JNW4	Morganella_phage	4.4e-49	62.5
AZH05978.1\|2117694_2117964_-	hypothetical protein	A0A2H4FNF0	Salmonella_phage	6.0e-19	53.5
AZH05979.1\|2118017_2118440_-	hypothetical protein	NA	NA	NA	NA
AZH05980.1\|2118598_2119120_-	DUF1440 domain-containing protein	NA	NA	NA	NA
AZH05981.1\|2119429_2120062_-	antitermination protein	NA	NA	NA	NA
AZH05982.1\|2120061_2120418_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	4.7e-43	70.7
AZH05983.1\|2120414_2120705_-	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	7.2e-34	68.1
AZH05984.1\|2120783_2121233_-	hypothetical protein	A0A2H4FNF5	Salmonella_phage	2.9e-13	32.2
AZH07771.1\|2121300_2121630_-	hypothetical protein	A0A1C9LVV9	Vibrio_phage	1.1e-22	39.0
AZH05985.1\|2121657_2123043_-	helicase	Q716D2	Shigella_phage	1.4e-114	47.7
AZH05986.1\|2123042_2123810_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.5e-22	51.9
AZH05987.1\|2124074_2124422_-	hypothetical protein	A0A1W6JNY4	Morganella_phage	1.1e-36	72.9
AZH05988.1\|2124567_2124777_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-25	83.3
AZH05989.1\|2124882_2125527_+	LexA family transcriptional regulator	A0A077KGZ5	Edwardsiella_phage	1.9e-79	65.0
AZH05990.1\|2125561_2126341_+	hypothetical protein	NA	NA	NA	NA
AZH05991.1\|2126337_2126703_+	hypothetical protein	NA	NA	NA	NA
AZH05992.1\|2127157_2127475_+	hypothetical protein	A0A1W6JNZ0	Morganella_phage	7.1e-19	52.3

DBSCAN-SWA_9

2175566 : 2184099

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH06040.1\|2175566_2175941_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.7e-25	52.0
AZH06041.1\|2176549_2177038_+	hypothetical protein	NA	NA	NA	NA
AZH06042.1\|2177339_2177549_-	cold shock-like protein CspE	A0A1W6JNX5	Morganella_phage	5.9e-22	74.2
AZH06043.1\|2177746_2178220_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
AZH06044.1\|2178501_2178726_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-13	47.9
AZH06045.1\|2178737_2179142_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	4.8e-12	38.5
AZH06046.1\|2179170_2181297_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-205	51.3
AZH06047.1\|2181322_2182291_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.5e-133	71.0
AZH06048.1\|2182899_2184099_+	proline/glycine betaine ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	3.8e-28	37.6

DBSCAN-SWA_10

3286141 : 3307641

unidentified_phage(25.0%)

transposase,tRNA,integrase

attL 3279349:3279362|attR 3312443:3312456

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3279349:3279362	attL	NA	NA	NA	NA
AZH06962.1\|3286141_3287506_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
AZH06963.1\|3287709_3288927_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	6.3e-15	28.3
AZH06964.1\|3288923_3289292_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZH06965.1\|3289647_3290601_-	replication protein	NA	NA	NA	NA
AZH06966.1\|3290587_3290815_-	DNA-binding protein	NA	NA	NA	NA
AZH06967.1\|3290965_3293725_-	conjugal transfer mating pair stabilization protein TraN	NA	NA	NA	NA
AZH06968.1\|3293821_3294355_-	regulator	NA	NA	NA	NA
AZH06969.1\|3294755_3295969_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.5e-117	65.1
AZH06970.1\|3296229_3296439_-	hypothetical protein	NA	NA	NA	NA
AZH06971.1\|3296625_3296916_+	hypothetical protein	NA	NA	NA	NA
AZH06972.1\|3297072_3297777_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZH07807.1\|3297890_3298667_+	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
AZH06973.1\|3298687_3298909_+	hypothetical protein	NA	NA	NA	NA
AZH06974.1\|3298895_3299921_+	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
AZH06975.1\|3300342_3301095_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.4e-33	38.7
AZH06976.1\|3302905_3303391_+	phenol hydroxylase	NA	NA	NA	NA
AZH06977.1\|3303587_3304678_-\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
AZH06978.1\|3304767_3305583_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
AZH06979.1\|3305669_3305972_+	phosphoglucosamine mutase	NA	NA	NA	NA
AZH06980.1\|3305865_3306117_-	hypothetical protein	NA	NA	NA	NA
AZH06981.1\|3306147_3307641_-\|transposase	IS91 family transposase	NA	NA	NA	NA
3312443:3312456	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3311325 : 3362486

Escherichia_phage(33.33%)

transposase,integrase

attL 3339459:3339518|attR 3367101:3368697

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZH06985.1\|3311325_3312030_+\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
AZH07808.1\|3312114_3312516_-	hypothetical protein	NA	NA	NA	NA
AZH06986.1\|3312524_3315476_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
AZH06987.1\|3315478_3316039_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AZH07809.1\|3316164_3316515_-	DUF3330 domain-containing protein	NA	NA	NA	NA
AZH06988.1\|3316717_3317731_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AZH06989.1\|3317897_3318740_+	alpha/beta fold putative hydrolase EstX	W8EKH7	Mycobacterium_phage	3.0e-08	26.1
AZH06990.1\|3318835_3319444_+	HAD-IB family hydrolase	NA	NA	NA	NA
AZH06991.1\|3319501_3320293_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AZH06992.1\|3320554_3321814_+	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
AZH06993.1\|3321906_3322698_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AZH06994.1\|3322867_3323200_+	quaternary ammonium compound efflux SMR transporter QacL	E5E3Y9	Acinetobacter_phage	2.0e-08	35.3
AZH06995.1\|3323339_3323525_+	hypothetical protein	NA	NA	NA	NA
AZH06996.1\|3324379_3325171_-	sulfonamide-resistant dihydropteroate synthase Sul3	NA	NA	NA	NA
AZH06997.1\|3325639_3325885_-	hypothetical protein	NA	NA	NA	NA
AZH06998.1\|3325922_3326786_-	SDR family oxidoreductase	NA	NA	NA	NA
AZH06999.1\|3327016_3327721_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZH07000.1\|3327871_3328687_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AZH07001.1\|3328876_3329581_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZH07002.1\|3329731_3330547_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AZH07003.1\|3330736_3331441_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZH07004.1\|3331845_3332343_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AZH07005.1\|3332454_3332745_+	DUF1010 domain-containing protein	NA	NA	NA	NA
AZH07006.1\|3333391_3334096_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZH07810.1\|3334120_3334858_+	DUF3363 domain-containing protein	NA	NA	NA	NA
AZH07007.1\|3335074_3336289_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
AZH07008.1\|3336316_3336622_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZH07009.1\|3336733_3338227_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AZH07010.1\|3338257_3338470_+	hypothetical protein	NA	NA	NA	NA
AZH07011.1\|3338503_3339208_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZH07012.1\|3339432_3339636_-	hypothetical protein	NA	NA	NA	NA
3339459:3339518	attL	NA	NA	NA	NA
AZH07013.1\|3339654_3339834_+	hypothetical protein	NA	NA	NA	NA
AZH07014.1\|3339763_3340603_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
AZH07015.1\|3340596_3340944_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AZH07016.1\|3341074_3341554_-	hypothetical protein	NA	NA	NA	NA
AZH07017.1\|3341647_3342121_-	trimethoprim-resistant dihydrofolate reductase DfrA1	A0A140HLG8	Bacillus_phage	1.6e-19	34.4
AZH07018.1\|3342277_3343291_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AZH07811.1\|3343259_3343541_+\|transposase	transposase	NA	NA	NA	NA
AZH07019.1\|3343564_3344149_+	recombinase family protein	E5FFF9	Burkholderia_phage	5.5e-49	58.1
AZH07020.1\|3344227_3345217_+	ATP-binding protein	NA	NA	NA	NA
AZH07021.1\|3345237_3347781_+	S8 family peptidase	NA	NA	NA	NA
AZH07022.1\|3347858_3349784_+	DUF2813 domain-containing protein	NA	NA	NA	NA
AZH07023.1\|3349780_3351442_+	ATP-dependent helicase	S5MMD7	Bacillus_phage	7.1e-09	22.8
AZH07812.1\|3352510_3353383_+\|integrase	integrase	NA	NA	NA	NA
AZH07024.1\|3353386_3353683_+	hypothetical protein	NA	NA	NA	NA
AZH07025.1\|3354531_3354801_+	hypothetical protein	NA	NA	NA	NA
AZH07026.1\|3355215_3355611_-	hypothetical protein	NA	NA	NA	NA
AZH07027.1\|3355607_3356465_-	hypothetical protein	NA	NA	NA	NA
AZH07028.1\|3356708_3358133_+	conjugal transfer protein TraH	NA	NA	NA	NA
AZH07029.1\|3358136_3361541_+	conjugal transfer protein TraG	NA	NA	NA	NA
AZH07030.1\|3361781_3362486_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
3367101:3368697	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4019597 : 4118740

Escherichia_phage(32.14%)