CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024170	Microbacterium sp. Y-01 chromosome, complete genome	5 crisprs	WYL,csa3,cas3,DEDDh	2	2	0	0

Cas Category Instructions

Results visualization

1. CP024170

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CRISPR-Cas detection and classification

Crispr_ID: CP024170_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024170_2

784603-784715

Orphan

Consensus_repeat	Method
CCCTTCGACAGGCTCAGGGACCCAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024170_2

>merge|CP024170|2|784603-784715|CRISPRCasFinder
CCCTTCGACAGGCTCAGGGACCCAGGGGGGACAGGCTCAGGGGCCCTTCGACAGGCTCAGGGACCCAGGGGGACAGGCTCAGGGCCCCTTCGACAGGCTCAGGGACCCAGGGG

>CP024170|2|2|784603-784715|CRISPRCasFinder
CCCTTCGACAGGCTCAGGGACCCAGGGG	GGACAGGCTCAGGGGCCCTTCGACAGGCTCAGGGACCCAGGGGGACAGGCTCAGGGC
CCCTTCGACAGGCTCAGGGACCCAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP024170.1\|AZH77604.1\|782793_783825_+\|enterochelin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226964
CP024170.1\|AZH77607.1\|784985_785945_-\|3-methyladenine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223200
CP024170.1\|AZH77614.1\|793888_797422_+\|DNA-helicase	unknown	unknown	gnl\|CDD\|225160
CP024170.1\|AZH77611.1\|789294_792291_+\|ATPase	unknown	unknown	gnl\|CDD\|223496
CP024170.1\|AZH77608.1\|785995_786694_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
CP024170.1\|AZH77603.1\|781802_782789_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
CP024170.1\|AZH77612.1\|792315_792873_-\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|235538
CP024170.1\|AZH77609.1\|787027_787336_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
CP024170.1\|AZH77596.1\|775240_776701_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341047
CP024170.1\|AZH77601.1\|779887_780655_-\|NADPH-dependent-ferric-siderophore-reductase	unknown	unknown	gnl\|CDD\|99790
CP024170.1\|AZH77606.1\|784765_784963_-\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH77605.1\|783821_784577_+\|iron-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
CP024170.1\|AZH77602.1\|780757_781753_+\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
CP024170.1\|AZH77598.1\|777528_777861_-\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH80333.1\|788124_789294_+\|exonuclease-sbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
CP024170.1\|AZH77613.1\|792983_793802_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
CP024170.1\|AZH77599.1\|778008_779178_-\|RNA-splicing-ligase-RtcB	unknown	unknown	gnl\|CDD\|376465
CP024170.1\|AZH77610.1\|787387_787870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213403
CP024170.1\|AZH77600.1\|779451_779856_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319923
CP024170.1\|AZH77597.1\|776704_777529_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|370148

Protein	Function_ID	Function_description	E-value
CP024170.1\|AZH77604.1\|782793_783825_+\|enterochelin-ABC-transporter-permease	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.09293e-98
CP024170.1\|AZH77607.1\|784985_785945_-\|3-methyladenine-DNA-glycosylase	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	4.88902e-23
CP024170.1\|AZH77614.1\|793888_797422_+\|DNA-helicase	gnl\|CDD\|225160	COG2251, COG2251, Predicted nuclease (RecB family) [General function prediction only].	7.6286e-62
CP024170.1\|AZH77611.1\|789294_792291_+\|ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	4.41287e-62
CP024170.1\|AZH77599.1\|778008_779178_-\|RNA-splicing-ligase-RtcB	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	1.23012e-169
CP024170.1\|AZH77603.1\|781802_782789_+\|iron-ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	6.68499e-124
CP024170.1\|AZH77612.1\|792315_792873_-\|nucleoside-phosphorylase	gnl\|CDD\|235538	PRK05634, PRK05634, nucleosidase; Provisional.	1.93698e-30
CP024170.1\|AZH77609.1\|787027_787336_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	4.00798e-16
CP024170.1\|AZH77596.1\|775240_776701_+\|MFS-transporter	gnl\|CDD\|341047	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of putative multidrug resistance (MDR) transporters including Chlamydia trachomatis antiseptic resistance protein QacA_2, and Serratia sp. DD3 Bmr3. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.87628e-16
CP024170.1\|AZH77601.1\|779887_780655_-\|NADPH-dependent-ferric-siderophore-reductase	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.08076e-54
CP024170.1\|AZH77600.1\|779451_779856_-\|hypothetical-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.09003e-25
CP024170.1\|AZH77605.1\|783821_784577_+\|iron-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	2.63838e-140
CP024170.1\|AZH77602.1\|780757_781753_+\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	8.11045e-77
CP024170.1\|AZH77610.1\|787387_787870_+\|hypothetical-protein	gnl\|CDD\|213403	cd12208, septicolysin_like, putative septicolysin, cholesterol-dependent cytolysin family and related proteins. This group contains some members identified as septicolysin. While septolysin is poorly characterized, it has been identified as a a cholesterol-dependent cytolysin, and acts to facilitate the infection of certain pathogenic bacteria to cells. Cholesterol-dependent cytolysins are pore-forming toxins that aid in bacterial pathogenesis of various gram positive species. Pores are formed by oligomerization into ring-like structures. Related proteins in eukaryotic immune systems use this pore-forming mechanism.	1.00021e-56
CP024170.1\|AZH80333.1\|788124_789294_+\|exonuclease-sbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	8.37918e-47
CP024170.1\|AZH77613.1\|792983_793802_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	3.3807e-166
CP024170.1\|AZH77608.1\|785995_786694_-\|transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	5.36244e-26
CP024170.1\|AZH77597.1\|776704_777529_-\|acyl-CoA-thioesterase	gnl\|CDD\|370148	pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C terminal. This catalytic domain is found at the C terminal of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases (BAAT).	2.18787e-24

>CP024170.1|AZH77605.1|783821_784577_+|iron-ABC-transporter-ATP-binding-protein
MIALDGVRRDYSSEVGIGPVDLQIPAGGITALIGPNGAGKSTLLTMIGRLNGMDAGAIEIAGLDVASTKSKDLAKVVSILRQENHFVTRLTVRQLVGFGRFPHSKGRLTRADEEIISSAIDFLDLGALEGRYLDELSGGQRQRAYVAMVLAQDTEFVLLDEPLNNLDMRHAVQMMKHLRRAAEELGRTIVIVLHDINFAGHYADHICAMKDGAVVEFGAPEAIMTDDVLTRVFDTPVRVVDGPSGPLAVYY
>CP024170.1|AZH77604.1|782793_783825_+|enterochelin-ABC-transporter-permease
MLTKATRGDRVRSAGSFTTPRARRRYLIVLGILTVLALGSGFGLLAWGNPMPAGTPGFWRIAQHRATDVTVMALVAVAQAIATVSFQTVTNNRIITPSIMGFESLYRVVQTSTVYLFGVAGLVAIQGVGQFAIQVAIMVGLAVALYGWLLSGRYGNLQIMLLVGIVIGGGLGAVATFMQRLLTPSEFDVLAARLFGNVSNADPSYLPLAVPLVVGAAALLWLRSRRLNLMALGPDAARSLGLDHRRELFIVLFLVAVLMATSTALVGPMTFLGFLVATLAYQFADTHDHRLIFPVAVLTAFTILAGAYFLMKNVFYAQGMVSILIELVGGTVFLIVILRKGRL
>CP024170.1|AZH77603.1|781802_782789_+|iron-ABC-transporter-permease
MTTTHLTSPPRSAGRLFDVKLLIGVLVVAVLLVISLFTGVYDIAGADDGAQMFQITRVPRTIALVLAGASMAMAGLVMQLLTQNRFVEPTTTGTTEWAGLGLLAVMILVPQPSLPLRMAGAVLAAFIGTMVFFAFLRRVALKSSLIVPIVGIMLGAVVGAVSTYLALATNSLQIIGVWFAGSFTSVMRGQYEMLWIVAIIGVIVFIVADRLTIAGLGEEIATNVGVNYNRIILLGTVLIAVTTGVVTVVVGNLPFLGLIVPNIVSMVRGDDLRSNLPWVCLLGIAIVTVCDIIGRTIIMPFEVPVSLILGVVGAVVFVLLLLRQRRRG
>CP024170.1|AZH77602.1|780757_781753_+|iron-ABC-transporter-substrate-binding-protein
MSVPRTLTATSVALVGLLALAGCASGSTAEPEETESSADSVTIEDNTGTHEIPTPPSSVVALDNRTFQTLSDWGVELSAAAVALMPETVAYAKDDEIVDIGLHTEPNLEAVVAVEPDLIISGQRFTQHNAAIADLVPEATIIDLDPRDGEPFDAELKRQVTVLGEIFGKQDEAQKLVDDFDAAVERAKAAYDDADTVMAVNTSGGEIGYLAPTVGRSLGPIYDILGLTPALEVDDASDDHQGDEISVEAIASSNPDWILVLDRDAVFAAETPDYVQAAEILESSEALAGVTAVKEKQIVYMPTDTYLNEGIQTYTTFLNDFADALEQSAKN
>CP024170.1|AZH77601.1|779887_780655_-|NADPH-dependent-ferric-siderophore-reductase
MSDTKSGFSIERRGLELRFRNVTLSAREWLAPDFVRVRLTGSDLAGFESLGSDDHMRLFFPAGPVGSVEELRASPSREYTPLAWGEDWLDVEFAVHGDQGVAAPWAANAPIGSTIGVGGPRGSAVLEGQPGSWLLVGDETAIPAIRRFATLIPKGTPARIVIETVDAAHQVEIEAPVTIEWLHRGQATAGSALSAFLEALTPGDVPGDDPFVFIAAEQSIVKPGRALLQRWAVDTANAVVKGYWKRGEAEYHAPH
>CP024170.1|AZH77600.1|779451_779856_-|hypothetical-protein
MALLDHLGITVDDLERGRAQFHPVLTALGYQSGGEDDHSISWHHGEETEIILYTWDEESGPHRHGRVGWQHMAFGVPSRAEVDRLHALALDAGWTAVREPKEYPRYSDRYYASFVEDADGIRIEFMYNPPREST
>CP024170.1|AZH77599.1|778008_779178_-|RNA-splicing-ligase-RtcB
MERLSARLLSWASLIDEKTLAQAHTTARMPFIHPHLALMPDAHLGKGATVGSVIPTLGAIIPAAVGVDIGCGMIAVRTQFTRNDLDGRELAKLREQIERAIPLSAGRYNRKVVATAEPRIAELEQLAEKNGFDPAQYAGNWRLQLGTLGSGNHFIEVSVDELDRVWLFLHSGSRGVGNKIATHHIAVAQRLAKQWWIDLPDPDLAYLVEGTPEFTRYIRELRWAQHFALLNREEMMDRVIRQVSEFLGSPVDEQERINCHHNFTESELHYGKRVWVSRKGAIQADAGRPGLIPGSMGTASYVVEGRGDPQSLNSSPHGAGREYSRSAARKAFTHDQLREAMAGIEFRDTDAFLDEIPQAYKPIDRVMADAASLVSIRHTLRQLVNVKGD
>CP024170.1|AZH77598.1|777528_777861_-|hypothetical-protein
MGFMNDAQIWTMIGSFVALMFGTLTLVSTLFIRVLRSEIGGLRTEMNGQITGLRTEMNGQITGLRNEVNGQLTGLRNEMNARFDTVNTRIDGLDRDVQAIVKRTFGLDRD
>CP024170.1|AZH77597.1|776704_777529_-|acyl-CoA-thioesterase
MRPDHRPMVSSPDLHDAYPERPCGTAVLILAGSSGRVENGRAELFARHGARARAIRWFGGVDQRPAPHEVPIELFAAQLELLRKDHDRIAVLGTSFGAEAALVTASLFPVDITVAIAPSSVIWSGNDGAGWSSHWTHRGAPLPAVRFDADWTPSTEPPEYRSLYETSLELDAERTASATIAVERIPGRVVLVAGGDDRVWPSDGFAAAIARRRREHGRETTVVTHPSAGHRVVLPGESAPTGGVRMARGGTESADAELGALAWPEIAQALRLHD
>CP024170.1|AZH77596.1|775240_776701_+|MFS-transporter
MTRTRTLGTLAVVVGFLAFVEFTSGVLQGYYTPMLSDIARHLGIHDADVNWLEGAQLMLSALVVPAFAKLGDMVGHKRMLLISTAVTAAAALVLPFTDSFGVFLAAWALMGFYVVWLPLEIALIWSRSRRLDGRSSITAKAAGLLVAALEAGAIIGALVGGALIDVLPLTVVLLVPAVLIVVCFFVILFGVTESPEPTGGVFDTVGLVLISLALLCFTGGLSLLRLEGGLTNPLSWAVVALGIVLVIPFVRWELRCQDPLIDVRMFRSPALGPVFLTAGLFGVSVLGAQAPLSTFARTDPTVYGYGLGTSGFATSLIIGVYLVAMIVGALLFPVVARKLSPRRTLMGASVLVGVGFLLFLPFHDASGQVIANMVVVGLGSGALVAALPAAAASAAPATQTGVATGLTNSVKTVGGAIASCVFGIALLHGVTSAAGGADGTAGSLAGYFTVWIVCGATALAAAVILVFVPKTAFTDRTVEAEIAPVV
>CP024170.1|AZH77606.1|784765_784963_-|hypothetical-protein
MSRTALRISVTVGLLVVGVVIGLIFQNVRLGVLLAAIVWFGWFLGYESRRGHNAGVNDEDHGVEL
>CP024170.1|AZH77607.1|784985_785945_-|3-methyladenine-DNA-glycosylase
MTLTADPASADAAAAGAPRETVYRPPHPLDLRRTVGMLRRGGTDPTMVIDGPVIWRTMRTALGPATLALRMTGAEVRATAWGRGAELALDRVPDLCGARDDDEGFDASRHPLIADSARRNPGLRLTRGGEVFDALACAIIEQKVTGMQAFGAWRWLVSRYGERAPGPTPRPLFTAPSPEQWFRIPSWAWHRAGVEPPQSRTIVRAAERGDRIARAVHAAADGVDRDRVLTSLPGVGVWTSAETRIRALGDPDAVSVGDYHLAHEVGYALTGKRTDDTGMIELLAPWAGHRQRVVRLIFASGVQEPRRGPRLAPEDHRDR
>CP024170.1|AZH77608.1|785995_786694_-|transcriptional-regulator
MSNTALLERPATAVRTQTAAAPLPSAAADLPAVRSPRGFALYVGLDEIKAAEAGVSLPLLVDALRRTLAELAPGAETHATVALAPHGSGGRDLDVVRLALQEPGAIARTKAAAEEDTVDEESGVTVDISRKRVLIDGESAAFTYKEFELLQYLVLREGRTIERSELVSALWQAQDDETPGERTIDVHVRRLRAKLGRYEDIVRTVRGIGYRFDRHADVVIRYGHGTPSPDRF
>CP024170.1|AZH77609.1|787027_787336_+|N-acetyltransferase
MTISHTVGGFLLTDEKDASRYTLMRDGKLVSVLDYRDDGHTIALTRAFTVPTFRGNGYAGKVVEGAVADIIERGDRKVDAVCWYVADWFSAHPEHAGLLRRR
>CP024170.1|AZH77610.1|787387_787870_+|hypothetical-protein
MRLAEALTARADLQRRIEQLRARIVANARFQEGEEPAEDAAALIREAEDSLTELRDLIRRINATNARLDLGADGTMTDALATRDVLRLRHSVLTDAAAAASGANDQFLRQMRSELRQVSALPVARLRAQADAVAQELRELDNRIQQANWSNDLEEESGSR
>CP024170.1|AZH80333.1|788124_789294_+|exonuclease-sbcCD-subunit-D
MRILHTSDWHIGRTFHGNSTMDALAEVLGALTEQVRRHDVDVVIVAGDVFDSATPAAAAYTLLGDALVSLHDTGARVIVTSGNHDSAARLGFQSRLLRDGIHVLTDPLAIGQPVTVDDAHGPVHFFGIPYLEPAIVRQHWPEGDSAGRQLRTQAQTMAHAMELVRLGMREHEGRSVAIAHCFTAGVDATVGLEREVRQGGLDVVPVSVFDGPDYVALGHIHGRQELSDRVRYAGAPLHYSFGEQHKPRGSWLVDLDADGLASVEWIELPVPRRLVTLTGALDEILAPAMVAEHADDWVCAIYTDAVPQTEPMRRLRESFPFCAMVQHQPAVTTEAGERSYAQRLRTAVTDADRIEAFLEHVRAGNGATDTEAALIRSVLDERVRAEALV
>CP024170.1|AZH77611.1|789294_792291_+|ATPase
MRLHRLEIEGFGPFRSRQTVDFDAFADDGIFLIAGRTGAGKSSILDAVCFGLYGGVPRYDGGEKRLRSDHCEPDDISEVVVEFSTPAGRFRVTRSPEYLRPAKRGGGMTKQAPAVALDEWTETGWVGRAARAVDVGNELDEILQLSREQFLQVILLAQNRFSEFLLAGSRDRQVLLRRLFGTQRFEDVQARFDERRRAAEQMLGARLATVAARVEEAERLVTAVELWGEGTEDESTGDEKNATRVFTTDERLDALRRAQARADYRAERRASEQAEAEQRSAAADAALAKTREERQAQKERDRARVALEQLDSEEPQIAEARAELAAARAAEALRPAIAAAERAAVLHAKAVEDERTARAVWDAFGMSVDGDLEEWAAARTRESGAWERARDLEEQEPALATAVAAAATAVEEAAERVAAGERERASLPEATAALTAERDEARRIADRGDDLRAAVDTARSRRAAAREADRLRQALAVADAEVAEASASHARAQTVLAQLRQRRADGMAGELASRLAPDTACPVCGSQEHPAPASHADPVSGEDIEEAEAARDAAAQQERELVAASAALHAELAAATARSEERSVEQAEAELADAEEARARSLAAAEEAKDLEARLAALVVRAGEIEAERAEAAAALAAAREAHALLLQRAADAQTLISEARGDFPSVGARLEDAAAKIAAAHAVVEAVAETARRTLALAETESERDAALADTAFPVVAAVEESLRSPAEQEALDARITHHAVQREKERAILFDLELRTLPEEPIDVAPAELAAAEARASWKHAVDEAVRSAGDAERLADLIRSAAAEHARTADDAAEFETLQGLADTIAGRGANTRKMTLETFVLAAELEEIVEAANRRLHDMSSGRYQLEHSDALAARGAASGLGIVVFDAFTGQTRPPQSLSGGETFLTSLALALGLAEVVTARAGGIRLDTLFIDEGFGSLDGDTLDVAMRTLDELRQGGRTVGVISHVEAMQEQIPAQLTVRALPNGPSLIETR
>CP024170.1|AZH77612.1|792315_792873_-|nucleoside-phosphorylase
MKLLVAALASELSAFPEELEGFDRLVTGPGKLQATYALTRALDAKTYDEIVVVGTAGAIDPGLEATVHEIGTAFQHDVTDLDGVSGQHVSLPARVSTGRDGVLIATGDHFVEDAEVTAVIRPSGAALVDMETYAYIWVAEQFGVPIRVFRAVSDQAEDGALTDWREAVARCSVQLRDFIRSEYGV
>CP024170.1|AZH77613.1|792983_793802_+|ammonia-dependent-NAD(+)-synthetase
MSLQKQISEDLGVKAEIDPEAEVDRRVGFLADYLRETGAKGFVLGISGGQDSTLAGRLAQLAVERVRAEGGEAKFLAVRLPYRVQHDADDAAAALEFIAPDSSVEVNIQNGVDGVEQDIEFAVTSDITDFNRGNIKARLRMVTQYALAGHDGLLVIGTDHAAEAVTGFYTKFGDGAADILPLSGLTKRQGRSLLQFLDAPHRLAFKVPTADLLDGQPGRADEDELGLTYEQIDDFLEGKAVDPEVAGLIEARYLATEHKRHLPVTPDDTWWR
>CP024170.1|AZH77614.1|793888_797422_+|DNA-helicase
MRIDTQAQRVIWSASDLKAAAECEFAWCRAIDAKLGRVPAVEEPEDATLKRAAELGDVHERNVLARYLSDLGDERVHRIDKVSSSDAAALAAAVEETIAALRSDALVVFQAAFATEEFVGFADFLRKDVDGRWRVQDSKLARKARVTALMQLAAYVDQLDRLGIPRSDEVDLILGDGSISTHDVDDLLPLFRVRRARLRALIADRAIADGRAGAPLAWGDDRGDLQVVACGRCATCEEQVIAHRDLLMVARMRPVQRARLRAAGVDTIDDLAAASTPPEGMNVDTFENLRAQARLQLRADAEGVPTYEVHYAPAIHTLPVPSHGDIFFDFEGDPLYTEPAADGEAQWGIDYLFGWVDNADQYSALWAHTFADEKQALEDFLDFVKLRRAAHPGMHIYHYAPYETSHLVAMAARHGVREGEVDRLLREGVFVDLYPLVLRTVRVGSRSYSIKKLEPLYMGADVRTSDVQKGDDSIVQYVAARELAAAGEDAEADAVLADLADYNRYDCVSTRRLRNWLIDIAREKGVAPAPPDAADEVIYEPSPRSVALLADAERDREAGGDGLVHRLAAAAIDYFPRESKSFWVSHFQRLREPVTMWDGTRDVVRVDAPSSTVRREWSIGEGRRVMSRDIEIRGEVSPGTTLGAGSQPFALYGVPAPFDTEVPSRAVHVPHTVTVTEVLDDGYLVTESAVQGQTWDELPLALTPAAPPRVASLQGAIDEWADAVHDAAPGFPHDAATDILRRIPPRTVSGAGLPSADEDAIDAIVRGILDLDRSYLAVQGPPGTGKTYTGSRVIARLVTEHGFKIGVVAQSHAIIETLLARVVDDGVPPAQVAKAPKDPDAETPYTTIPKNGMASFLGEHADEGAVVGGTAWDFSNTQRVDRAGLDLLVIDEAGQFSLASTIAVAAGAKRLLLLGDPQQLPQVSQGAHPEPVDTSALGWVMDGDPVVRPEYGYFLARSWRMHPFVAAPVSKLAYAGQLASAPGTDLRAVDGIDPGLHVVPLRHRGNATQSAEEAAEVVRRVRDLVGRTFTDNDALRSRRPLAASDIIVVTPYNAQRQLVLDALSEAGFPDVPVGTVDNFQGKEAVVSITSLAASSGRDAPRGPEFLLLQNRLNVAISRAQVVAYLIHSPALLDDLPYTPEGVARLSAFATLVGAGDDAPSAAASAVARAEETQNVGA

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Crispr_ID: CP024170_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024170_3

939879-939971

Orphan

Consensus_repeat	Method
CCCTTCGACAAGCTCAGGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024170_3

>merge|CP024170|3|939879-939971|CRISPRCasFinder
CCCTTCGACAAGCTCAGGGACCCGATCCTGCCCGGCCCTTCGACAGGCGCAGGGACCCAATCCTGCCCGGCCCTTCGACAGGCTCAGGGACCC

>CP024170|3|3|939879-939971|CRISPRCasFinder
CCCTTCGACAAGCTCAGGGACCC	GATCCTGCCCGGCCCTTCGACAGGCGCAGGGACCCAATCCTGCCCGG
CCCTTCGACAGGCTCAGGGACCC

Protein	Signature genes	Signature genes Name	Protein_function
CP024170.1\|AZH77759.1\|938558_939827_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380569
CP024170.1\|AZH77760.1\|940004_940766_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
CP024170.1\|AZH77761.1\|941774_942752_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
CP024170.1\|AZH77752.1\|931695_932763_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
CP024170.1\|AZH77758.1\|937484_938414_+\|protein-RarD	unknown	unknown	gnl\|CDD\|225510
CP024170.1\|AZH77763.1\|945943_946405_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237864
CP024170.1\|AZH77767.1\|949045_949762_+\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|224305
CP024170.1\|AZH77764.1\|946557_946872_+\|DUF2277-domain-containing-protein	unknown	unknown	gnl\|CDD\|378364
CP024170.1\|AZH77750.1\|930596_931214_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
CP024170.1\|AZH77756.1\|935640_936846_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|380115
CP024170.1\|AZH77755.1\|934344_935481_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223039
CP024170.1\|AZH77762.1\|944371_945874_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
CP024170.1\|AZH80342.1\|940762_941728_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
CP024170.1\|AZH77766.1\|948059_949049_+\|biotin-carboxylase	unknown	unknown	gnl\|CDD\|237195
CP024170.1\|AZH80343.1\|942754_943903_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
CP024170.1\|AZH77754.1\|933239_934361_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH77751.1\|931210_931699_+\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
CP024170.1\|AZH77757.1\|937004_937301_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP024170.1\|AZH77753.1\|932759_933236_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH77765.1\|947016_948060_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|333815

Protein	Function_ID	Function_description	E-value
CP024170.1\|AZH77759.1\|938558_939827_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380569	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	6.37888e-87
CP024170.1\|AZH77760.1\|940004_940766_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	4.2067e-97
CP024170.1\|AZH77750.1\|930596_931214_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	4.41803e-30
CP024170.1\|AZH77752.1\|931695_932763_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	7.37693e-177
CP024170.1\|AZH77758.1\|937484_938414_+\|protein-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	8.8348e-82
CP024170.1\|AZH77763.1\|945943_946405_-\|hypothetical-protein	gnl\|CDD\|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	4.03728e-07
CP024170.1\|AZH77767.1\|949045_949762_+\|histidinol-phosphatase	gnl\|CDD\|224305	COG1387, HIS2, Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only].	6.05677e-23
CP024170.1\|AZH77764.1\|946557_946872_+\|DUF2277-domain-containing-protein	gnl\|CDD\|378364	pfam10041, DUF2277, Uncharacterized conserved protein (DUF2277). Members of this family of hypothetical bacterial proteins have no known function.	1.2466e-34
CP024170.1\|AZH77761.1\|941774_942752_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	8.74571e-57
CP024170.1\|AZH77756.1\|935640_936846_-\|SAM-dependent-methyltransferase	gnl\|CDD\|380115	pfam18096, Thump_like, THUMP domain-like. This is a domain of unknown function found in bacteria.	3.64968e-18
CP024170.1\|AZH77762.1\|944371_945874_+\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
CP024170.1\|AZH80343.1\|942754_943903_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	4.91924e-73
CP024170.1\|AZH77766.1\|948059_949049_+\|biotin-carboxylase	gnl\|CDD\|237195	PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional.	2.03461e-60
CP024170.1\|AZH80342.1\|940762_941728_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	1.77584e-102
CP024170.1\|AZH77751.1\|931210_931699_+\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	8.66035e-39
CP024170.1\|AZH77757.1\|937004_937301_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	9.43111e-50
CP024170.1\|AZH77755.1\|934344_935481_+\|hypothetical-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	0.00270833
CP024170.1\|AZH77765.1\|947016_948060_+\|hypothetical-protein	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.36163e-35

>CP024170.1|AZH77759.1|938558_939827_+|amino-acid-ABC-transporter-substrate-binding-protein
MTAFTRSRSAKILAGVALLSASAMVIAGCSSTPSDEPSDGGGSSADLTLKLGSLLPQTGSLSFLGPPMESGVGLAVKEVNDADAGVTIELTAEDEGDTDTKAYETSITKLQSAGVSAIVGAAASGVSRLILDGNVSAGILQISASNTGPDFTDWDDNGLYFRTAPSDLLQGEVLGNLIAEDGHKTLGVIYQNDAYGTGLFDNIKSTFEGAGGEVVADASYNVGDGQFDAQVETIKAQNPDAVAIVSFDQFKTIAPLLVNAGISPDKFYLVDGNLSDYGSSPDTNFPFSLEGAQGTKPGPALEDDFTDRLQTFWTGEGNPEVNDFTYAAEAYDAVVLVALASLAAGSTEGADIAAKMAEVSGGSGDGEKCTSFAECAKIINDGGTADYDGYSGEITFDENGDPQGASIGTYVYGADNLITRTN
>CP024170.1|AZH77758.1|937484_938414_+|protein-RarD
MPLESPRATQTAGVAYAGAAYLLWGVLPLYFLLLVPTGPWEVVAWRVLLSFVFCVLLLTVTRGWAAFGVILRQPRLLGWTALAGLLIYVNWQVFLIGTLSGNVVETSLGYFINPITTVLLGVFVLKERIRRLQWAAIAIAAVAVIVIVVAYRQFPWIALSLTASFGVYGLIKKKIGPAVDAVSGLTLESFWLIPIAVVQLVLVAQTTGITMGANGWPHALLLAFAGVATAVPLLLFAAGTRRINLTVIGMIQFITPVMQFLIGVAVLHEPMPPERWAGFIIVWIAIGVFVVDLLLAARRGRRSAQPELV
>CP024170.1|AZH77757.1|937004_937301_+|co-chaperone-GroES
MSVSIKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDRVLYSKYGGTEVKFGADEFLVLSARDVLAVVVR
>CP024170.1|AZH77756.1|935640_936846_-|SAM-dependent-methyltransferase
MEMSELRALLTPVGLELLDSLGPIEAVAEVARAVSRLRADGHSPDLVSAVVGQAHLRAKATAKFGPFAARMLFTRAGLEQATRLAVAARHAQRIRQAGFTGVADLGCGIGGDALAFAGAGLDVLAVDADEVTSAIAAYNLAPFGAAAQVRHATAEEALPEAEASGARAIWMDPARRTSGHSETRRVSSDGYSPSLDWAFDVAARVPTGIKLGPGHDRDALPADAEAQWVSADGSVVELVVWSGALAREGVRRAALVIRGDRSHEMTAPADTVDEPVRELGAFLHEPDGAVIRARLIGDVARSLDAGMLDRHIAYLTSDAAVTSPFVQSFRVRETMAANPKAISAALKAHGIGRLEIKKRGVDIDPAAFRRKLALRGDQEATLILARIGDQRRAILADRIPS
>CP024170.1|AZH77755.1|934344_935481_+|hypothetical-protein
MPAGTEPEELRALQRKAYGPHGGALTDIEARRLRELEQAGRSTTPPVEDASSPALPEPTSEPQSTVAEERSSGGGADAAGPLREAEPGAPSVDEQSGTPVRSLRRHAAAVVTAALLLAAGTGAGWALFAPRVDGIPLTEDQQQRRAELSADAFDQGSVRAIAERDGALAWYATQDGGDIHCLILDLDEQSQTDCLPSDEIERGLTASLSLPPGDEAEEGGVLYATMLLSTTGEPMVGIQRWTSTSTLSWQFEGEELARAESLVAQGYQLGVSIVGTFRGAPVWVADRVSEQGSTLRCLVVDAADAGLMECEPLETAVSNGLRTEVLDTDPDQAAVLELKFTTQQTPYLTITAPPPGPPASVVVQAPPGDPIEVSTPDR
>CP024170.1|AZH77754.1|933239_934361_+|hypothetical-protein
MLSPDDLEELRSLQERAYGRDAGLTAAEAERLRELEERRFSRPPETTDAADATLRGPVGSERITAAETGEAGAGHAAPLAEKQADSRGQPIAPDPGLPDTASRSSARALLRRHWRPAALIAAASLLAGVGIGWVASAVSAPAPVALTAEQQEWQNDLLASGDYDSGSVRAVAVEEGTVVWTATKDERSRTCLILSTGDVTQPSCDRTETVATTGIYGSITVDADDDRQRQVAVQMLLTAAGEPAVAVSAYDYETGISGITYANDEEALIAERLVDDGFDANSLWVVGYDDDVPVWSGIQTETQNPCLIYGGSAPDDPVTCADPETMQEESSSLVLNVVDAETGGVTHLEMRSNRGPTYLVITREEGVVGAGGD
>CP024170.1|AZH77753.1|932759_933236_+|hypothetical-protein
MSDISGPRGPSSPPARIEQPSEEVEHPARSARLPGAPRDGYTKLPTGPVGIEPVVVSGPDIDAPEEAEWEPTTGTIDVDETRLAPWALLAAIVALGASFFVGWGIPVAVVAVIAAIMSLRRPVESRAIARWALVLGLCATVYSLGWLVWAGMQFEKLG
>CP024170.1|AZH77752.1|931695_932763_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MSGPLVLGIETSCDETGIGIVRGRTLLSNTIASSMDEHARYGGVVPEVAARAHLEALQPAIDAALAEAGVGLHELDAVAVTSGPGLAGALMVGVGAAKGLAVSLDKPLYAVNHLVGHIAADILTADSAPLEYPTIALLVSGGHTSLLHVRDLTTDVELLGETMDDAAGEAFDKVARLLSLPYPGGPEIDRAAVDGDPDAIRFPRGLSRASDLAAHRYDFSFSGLKTAVARWVERCEADGVEVPLADVAASFREAVVDVLVTKALAACADLGVPRLLLGGGVIANRRLREVALSRAEAAGVTVRIPPLSLCTDNGAMIAALAAELISSGRHPSTLAFGADSTLPVTEIQIAEAVPA
>CP024170.1|AZH77751.1|931210_931699_+|ribosomal-protein-alanine-N-acetyltransferase
MTLRDATPADLDAIMAIENRSFPTDAWSRETMAAELSSPHGRYLVDDQDGAVIGYGGVRALRGSADADIQTIALLAEHRGQGRGRALLRALLAAATERGAREVFLEVRADNPVAEGLYIAEGFREIGRRPRYYQPDDVDAIVMRRELPRHAASAETVEEAKA
>CP024170.1|AZH77750.1|930596_931214_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MILAVDTSLGTAVALADADGARRAEAAAADPLGHAEVIGDLLVEALREAGDGEITHVVAGMGPGPFTGLRIGIAAARAFALGRGIPVIPVPSHLAAALTALQTETQPFAIVTDARRREVAITVFDGVDEDGIPQIVADTVLVKAADADAHLDGIHRVDVAALSALDLARVGARALAAGRTLAGEEPLYMRHPNVTLPGAPKKVGT
>CP024170.1|AZH77760.1|940004_940766_-|ABC-transporter-ATP-binding-protein
MSAENPASSSADDVVVELKDVHAGYLPGVNILNGANLIARQGELIGIIGPNGAGKSTLLKSIFGMVNVRSGDITVNGESIVGLKADKLVKRGVAFVPQTNNVFPSLSIEENLQMGLYQNPKIYAERLEFVTGIFAELGKRLKQRAGSLSGGERQMVAMSRALMMDPSVLLLDEPSAGLSPVRQDDAFIRVSDINKAGVTTIMVEQNARRCLQICDRGYVLDQGKDAYEGTGRDLLNDPKVIGLYLGTLGTDAA
>CP024170.1|AZH80342.1|940762_941728_-|ABC-transporter-ATP-binding-protein
MRRPKTTGLAKGPAAPGVPKVDPILVADGVQRHFGGLTAVDVDHVEIPRGAITALIGPNGAGKTTLFNLLCGFDKPNSGTWSFDGTNLAGVPSFKVARMGQVRTFQLTKSLSLLTVLENMKLGAPGQRGEGFWSSLFPFLWRAQDREIEGKARELLARFKLDAKEKDFAASLSGGQRKLLEMARALMSDPTLVMLDEPMAGVNPALTQSLLDHILDLKELGMTVLFVEHDMHMVRHIADWVVVMAEGRIVAEGPPDEVMEDPAVVDAYLGAHQDLDLGAVTGRIPVIESDAAARLREQIEAEAEAELEATSTADPDQKGNA
>CP024170.1|AZH77761.1|941774_942752_-|branched-chain-amino-acid-ABC-transporter-permease
MDFGSILSNTAVYLISPVTIAYALAATGLAVHFGYAGLLNFGMAAFMAIGGYGYAISVLTFGLPWWVGMLIGLLGGALFAVILGIPTLRLRADYLAIATIAAGEIVRLLFTTQIFDEYTNSADGLAQFNGGFRDANPFPTGTYGFGPWTLSANDLWNRVFGIILLAIAILLVWSLMRSPWGRVLKGIREDEDAVRSLGKNVFAYKMQALVVGGIIGAAGGIVFVLPSAVVPGSYTTSLTFFLWTVLLLGGAATVFGPTLGAILFWVVFAFMANLLPALAKAGILPMSDSQASTLVFIFVGIALMLLVIFRPQGILGDKREMTFVH
>CP024170.1|AZH80343.1|942754_943903_-|branched-chain-amino-acid-ABC-transporter-permease
MTIEGNGFEGETETDADGKWRLYVPEKETYTLTVDEDTLPDGVIVDAAQLPEGTQPIAGTTASFEVEFGLTGTKIMNLFLGEGERMTTSFFDQLASRLVGGLNFGLLLALASMGAALIYGTTRLSNFAHAEMVTWGGLVALVTTSFWHLPLWLGIVAAVVGGGLFGWALDAGIWRPLRRRGLGVVQLMIVSIGLSLALRYAFQYMIGGGTRQLPGASPEPFRFGPISLSYIDLIGMGVSIVVIIGVAFFLTRTRIGKATRAISDNPQLAAASGIDVDRVVRYVWILAGTLAAISGILWAYFRPGVKWDMGMQMLLLIFAAITLGGLGTAFGALVGSLIVGIAVEVSTLWIPSDLKYASALVVLIVILLVRPQGLLGRKERLG
>CP024170.1|AZH77762.1|944371_945874_+|IMP-dehydrogenase
MDQHDPFGFVGLTYDDVLLLPGHTDVIPSEADTSSRITRRISVATPLLSSAMDTVTESRMAIAMAREGGIGILHRNLSIADQAAHVDRVKRSESGMITDPITTTQDATVEEVDALCAKYRISGLPVVDDEGKLVGIITNRDMRFVSGFERQTTFVKDVMTSENLVTAPVGVAAGEVIALFAKHRVEKLPLIDEDGKLAGLITIKDFDKSEKYPLATKDDQGRLRVGAAIGFFGDAWERAEALRDAGVDVLVVDTANGQSQGVIDLVKRLKADASFEHIDIIGGNVATREGAQALIDAGVDAVKVGVGPGSICTTRVVAGVGVPQVTAVYEASLAARPAGVPVIADGGLQYSGDIAKALVAGADAVMLGSLLAGTDESPGEIVFQSGKQFKQYRGMGSLGAMQTRGKQTSYSKDRYFQADVPSDDKLIPEGIEGQVPYRGPLSAVAYQLVGGLRQSMFYVGARTIEELKTRGKFVRITSAGLKESHPHDVQIVVEAPNYKK
>CP024170.1|AZH77763.1|945943_946405_-|hypothetical-protein
MTNPPFPDSPTPDSPTPDSTTPSAPPPAPPASSVPPSSPPQESAPPYSPPGAAPYGQPTPTPPGRVLSIVGLVLAVVAAPIGLVISIVAAVKLGRAGQPKGLAIAGIIVGAIITIFWIIAIIFFVAVFANIFGTCAELGPGVWNIDGVTYRCG
>CP024170.1|AZH77764.1|946557_946872_+|DUF2277-domain-containing-protein
MCRNIVPLNNLEPAATEEECHDAALQFVRKISGSTAPSRANREVFDRAVDDIAEVVRRLLDELVTSAPPKNRDEEAAKRRARSAERYEAIRVYQQEKRAARAGV
>CP024170.1|AZH77765.1|947016_948060_+|hypothetical-protein
MPEDAPRILVVDDDPDVALLVKTVLQRRAGCVVDVAEDGQVAVERVAASRPDVVVTDIEMPGLNGLELLAELRRTVPTVPVIVMTAHVSVEYAVSALRAQADEFLTKPLDNAKLVEAVTRLVAEGRRRRDEARTPERVLAIGAHPDDVEIGVGGLLAAHAKAGDEITILTLSRGARGGDADSRQDESLASAEMLGARLFLKDLIDTEISGGGSTVRLIEEVVQEIQPTIVYTHSSHDRHQDHRAVSEATIVATRRVGTVACYQSPSATIDYRPTRFVRIDQYLDEKLRLLERFSSQTARRDYLEPDFVTATARYWSRFGGGIAVEPLEVVRETAEFVGAHELTRRES
>CP024170.1|AZH77766.1|948059_949049_+|biotin-carboxylase
MTKRVLVTGAGGPAGVAVIRSLLRRSDLTVFAADMDGWASGIYLVPTEQRRLVPPGRDEDFVPTIARLVEDDRLDLVISTVDVELIALADRRDELAPAVLAAPSADTLNTALDKLALSERCAPTGRTPRTVLAGADAEAIDWEFPVFAKPRQGAGSRGVRLVPDRDALLALPTDEGLIVQDFLPGEEYSVDVIADATGNVVAAVPRTRARVDSGVAIAGRTLRDHELEETAASIARAIGLVGVANVQLRRDRAGRAVLLEVNPRFPGALPLTIAAGVDIPSLVADLFLGREIPVSVPFREVASVRFLEDIIVEVDEVLVSDHAGHQEEL
>CP024170.1|AZH77767.1|949045_949762_+|histidinol-phosphatase
MSHGILRGDHHVHSTFSDDAVSTLAENVAAATAAGLTTVRLVDHVRQSTTWVPEYLAAVRDLDRPEGLTVLTGVEAKILDATGALDIPALPQGIDRILIADHQFPGADGPLGPSAVRERMAGGWAVDDVLDQFVGALIAAMRRHPGNQLAHCFSLLPKIGLAEDDLGAERVQAWARTAAETDTLVEVNEKWGCPGTELLRALRLAGAEIVASTDSHVADDVGRYARIIPILDALEPSA

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Crispr_ID: CP024170_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024170_4

2372113-2372244

Orphan

Consensus_repeat	Method
ACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACAGCCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024170_4

>merge|CP024170|4|2372113-2372244|CRISPRCasFinder
ACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACAGCCCGTGGCATGGATTTTCAGTTGTTCTGGGCCGTCCGGGAGGGGTAAACCCCTTAACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACATCCCGT

>CP024170|4|4|2372113-2372244|CRISPRCasFinder
ACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACAGCCCGT	GGCATGGATTTTCAGTTGTTCTGGGCCGTCCGGGAGGGGTAAACCCCTTA
ACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACATCCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP024170.1\|AZH78990.1\|2369860_2370448_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH78984.1\|2361764_2363117_+\|conjugal-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|236090
CP024170.1\|AZH79001.1\|2388218_2389055_-\|hydrolase-TatD	unknown	unknown	gnl\|CDD\|366424
CP024170.1\|AZH78994.1\|2374312_2375413_-\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|239583
CP024170.1\|AZH78985.1\|2363123_2364590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274857
CP024170.1\|AZH78989.1\|2367493_2368006_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH78991.1\|2370444_2370657_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
CP024170.1\|AZH80429.1\|2381328_2382495_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176242
CP024170.1\|AZH79000.1\|2383996_2386663_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|223256
CP024170.1\|AZH80428.1\|2368059_2369781_+\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|378923
CP024170.1\|AZH78996.1\|2377166_2378404_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP024170.1\|AZH78986.1\|2364640_2365432_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH78995.1\|2375446_2375986_-\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH78998.1\|2380458_2380761_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	unknown
CP024170.1\|AZH78992.1\|2370640_2371870_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP024170.1\|AZH78987.1\|2365500_2365941_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH78988.1\|2365937_2367440_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|273346
CP024170.1\|AZH78993.1\|2372493_2372910_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214906
CP024170.1\|AZH78999.1\|2380757_2381327_-\|peptidase-C56	unknown	unknown	gnl\|CDD\|153228
CP024170.1\|AZH78997.1\|2379186_2380266_-\|amino-acid-oxidase	unknown	unknown	gnl\|CDD\|130444

Protein	Function_ID	Function_description	E-value
CP024170.1\|AZH80429.1\|2381328_2382495_-\|aldehyde-dehydrogenase	gnl\|CDD\|176242	cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
CP024170.1\|AZH78984.1\|2361764_2363117_+\|conjugal-transfer-protein-TrbL	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.933e-08
CP024170.1\|AZH79001.1\|2388218_2389055_-\|hydrolase-TatD	gnl\|CDD\|366424	pfam01026, TatD_DNase, TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.	6.05633e-27
CP024170.1\|AZH78994.1\|2374312_2375413_-\|acyl-CoA-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	4.04072e-61
CP024170.1\|AZH78985.1\|2363123_2364590_+\|hypothetical-protein	gnl\|CDD\|274857	TIGR03923, T7SS_EccE, type VII secretion protein EccE. This model represents the transmembrane protein EccB of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccE1, EccE2, etc. This model represents a conserved core region, and many members have 200 or more additional C-terminal residues. [Protein fate, Protein and peptide secretion and trafficking].	0.00615639
CP024170.1\|AZH78991.1\|2370444_2370657_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.36502e-09
CP024170.1\|AZH79000.1\|2383996_2386663_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
CP024170.1\|AZH80428.1\|2368059_2369781_+\|type-VI-secretion-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	2.44943e-30
CP024170.1\|AZH78996.1\|2377166_2378404_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.62137e-73
CP024170.1\|AZH78997.1\|2379186_2380266_-\|amino-acid-oxidase	gnl\|CDD\|130444	TIGR01377, Monomeric_sarcosine_oxidase, sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	2.31966e-21
CP024170.1\|AZH78992.1\|2370640_2371870_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.08163e-29
CP024170.1\|AZH78988.1\|2365937_2367440_+\|ATP-binding-protein	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	2.35218e-07
CP024170.1\|AZH78993.1\|2372493_2372910_-\|hypothetical-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	0.00530236
CP024170.1\|AZH78999.1\|2380757_2381327_-\|peptidase-C56	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	1.25577e-83

>CP024170.1|AZH78992.1|2370640_2371870_+|site-specific-integrase
MPRRAEPQPTAAPKPVPPIGVKVSTDMERRSYGIRARARWTDPTTKRRVIRSEIVRDEAAAHAFFDQLRNSSTKGMDVSMTLLEFVTSIGDRWARGLDPTSTGETYGYGLKLRVLPALGHLPVTQITAGIIDRTIDEWEQRHGASTIKNTIAPLVRVLDEAVRDGLIQINPAKNRAKRSLNRNAFRGQSAEHASPRAHAIPDMKTLNRLARACGKVHQSYSDFVMLAALLAARSSEVSGLQVGDVDFGKNLVVIRRQVFPGKGGLVTKPTKSRKERRVPILEPLRPVLERLTDGKQPEDSLLVGPKGGYLTTATVRDATNWDRIVAKLGLPDLTRHGLRHTGATWMADAGIPLHVLQDILGHASMETTRGYLHPDDRHLASAAEQANAFLSAAGQRKHARRSSPATRGL
>CP024170.1|AZH78991.1|2370444_2370657_+|DNA-binding-protein
MSDDGTLVVSPLLDSREVAAYLKVSESTLSRWRSAGTGPPFLRLGGIARYRLDAVDRWLGELEHDHASEG
>CP024170.1|AZH78990.1|2369860_2370448_+|hypothetical-protein
MSDEPRGDATTNDVPDSDVDEMDDDGYDEPLIAEPPHPINWNLLSAEDAEAEWLELNRWVDWLRHTYGLPASVVPPAWHLHPELMWELSALHLHWLCAYDPDQNGSAPLGWHRDFADARQRLREWVAACGTRLDHDRPTRQTVWPGEEPGDPIEDIPIIDRDAEFVEFVMSDVQARREAEEAFYRDLDPDTGELS
>CP024170.1|AZH80428.1|2368059_2369781_+|type-VI-secretion-protein
MIGLVVLFGVALILRAAGSVAAFLTGTPQPAGDPASGVGVLFRPGDPGSALDADGLNPVVYWIVAGLLLTGLVTGGLWAWLRLRRHTHRIEADPRRMAGIATRHEVAAAASDKALLRRAGNLRPGLSDPRPQDVGYRLGTSKGTSVWASVEDSIMVIGPPRSGKGLHLVIPAILDAPGAVVVTSTRPDNLTATMRARRRIGPVAIFDPQHLAEGLPAGLRWSPIRGCESPQTAMIRATGLAAGTGLSAGGVDGGGFWEGKTRAALQALLHAAAIDNRPPAKLFRWTLDPTAAADAVAILTGSTQAATGWAESLEAMIDSDPRTRDSIWQGVSLALGSLADPRVLDAVSPGPGEGFDPEAFIRNRGTLFLLATGSGAGASAALVAALVEDLIETARRLAARSAGARLDPPMLLALDEIANLSPLPSLPTLMAEGGGSGITTMPVLQSLAQARDKWNEHQANAIWDASIVKVILGGASNSRDLQDLSALVGERDEYTDSVTLGDHGTRSNQRSVRRVPIFPPDRIRRLPFGTGIVLLRSAPPIVTDLHPWPKRPDAGQLVADRTEIEALLRRSDT
>CP024170.1|AZH78989.1|2367493_2368006_+|hypothetical-protein
MRKPEPEPVPVSIPLVVLDVHEDGTVTVTVDGKRLDPDPFAPPWRRSSFGQIIDRATNDRTTPARVEVREADGTTFTDIIAARRRRSRPEPEPEPKSSTGPVFHTVEGAGFVPGEDVAVAVVTGHTDAAHTGTARAAIDPAGVGVDRAGGVIEVILFGRVSGTTIIRRLP
>CP024170.1|AZH78988.1|2365937_2367440_+|ATP-binding-protein
MSRGEKLHTAVLVAPASERRRLRKQRRQAAARLVAEQRHAEKEAAQAKAAAERAERRATVYLPAAGETGRAALRTPGRFRVPRHQDTSAVLAGQYPFLAEAGLGASGIFIGQDLYSGSSFVYDPWELYRQGVITAPNLILAGIVGSGKSSLAKSLYTRSLPFGYRVYVPGDPKGEHSGVAEAVGGKAIILGHGMGNRLNPLDEGYRPGGLSDQEWATTLTARRRDLLGALTETVLDRRLAPLEHTAIDTALAGAVRDADVPILPMVVDRLLRPDPADDPDGRLTEDGRQVGHALRRLVAGDLAGLFDGPSTVRFDPSLPMVSLDLSRVTENSTLISVLMTCSSAWMEAALLDPNGGRRWVVYDEAWRLMSHPALLRRMDAHWRLARHYGLANLLVFHKLTDLENVGDLGSANRALANSLLANAETRIVYRQETDQLGPTAVALGLTGTERRLLPGLGTGQGLWRIKERAFVVQHQLHPAELAAFDTTARMTGGNPQVHES
>CP024170.1|AZH78987.1|2365500_2365941_+|hypothetical-protein
MSRQVGTLTLTVWPDSPLGEHQRYAYRIEDAATGQTLDGRDLFTGAGAPVAPDRAMRDLACYLTAAGEARQYAIDNPGSSPEHEGLFPGWVAEAARQNADALALLGIEDSPQPKPDMPQRPRPAPDSSWFDRPAGGWVSETRGRSL
>CP024170.1|AZH78986.1|2364640_2365432_+|hypothetical-protein
MPTFTDPARDAGEAYEALRGLAHATRTFENPADTYAVIGDLLGGLRSLRQVLDQLANAHLTRQHHVTDDARDHAAGAAAALAAADELHQAGTLIDQADDRLSAAFNQSGRIVWNPQDRRVERWIGVVFLQGDEADQTLDLIDRGGDEAGIEHLSMWDYGEETTNAAFENGDVHDTAPVYPGDRQAETGDYAMTYNPQAGHVALYRRHLIPAEDAIDPPTAAHVPPTRDTAGRETAARRSAVRDGGWFEHPGVAAVKHARGLSL
>CP024170.1|AZH78985.1|2363123_2364590_+|hypothetical-protein
MPATEQKTPGSELTPMKFSRLTRRGVLLGLSVSQLVTLGIGGLSLLAAFYGGAGMLLAYTAPVWVLAVVLTWVPVAGRPMVEWLPVALWWLWRSTGGQLLYRRRIVKPRPAGNLALPGDMARLREHLDPETGACMIHDPRQATLTVVTEVTHPAFILLDPGEQERRVTSWGRVLATVCRSGRIATLQVLERTLPDSGSGLAEWWAEHGTDDGSWAATTYRELIERAGPAGERHATTVSLSLDMRVAARQIRTAGGGIRGAAAVLRQEMATLVAALRSADLTPSGWLGPGQVAVILRSAYDPAVAATLERHGRLGQELAAAGPVAVTETWGNLRTDSAWHTVLWVSEWPRSLVYPGFLAPVLLSTGIQRSVSLIYTPMRSDQAARDIRKKKVEHISDAAQRARIGQIEDAAQTAEYQDVLQQEADLTAGHGVLRVSGLISVSAPSVDELEAAVAAIEQAAIQASCETRRLVGQQAVAFTAAALPLCRTV
>CP024170.1|AZH78984.1|2361764_2363117_+|conjugal-transfer-protein-TrbL
MGVCDVPVISTVCDVAGEAAATVVAAPFDWLAQAMGGAAGWLIEAMWSVFDTTTLVDVQTDGFTSVYNLIFGIGVFLVLIFFCLQLITGLIRRDPTALSRAALGAAKSVLGAFVVVTLTALALEIVDQLCIGIIQASGETTGTMGDKIILLAAGLSGINIAAPGVGAIVTIFLAGLMIAAVAIVWFSLLIRKALLLVGVVLAPIAFAGASWDATKGWIGKWAAFVIALIISKLVLVVIFLLAITQIATPIELDIAAVTEPITGIVLMGIAAFAPYMVYRFVSFVGFDLYQQMGTEQEAKNALNRPVPIPSKPQGGGEPKKVLEDPKDGGGSGGGSGGTPPPKAPAPAAGGGGASAAGAGAGGGAGAGAGAGAAAGPAAAVVIGAKVAKDAAEAGPKAGHALAGQAETAADAAGGQNGGTPPPSQTPPPSTPQPRTPTEPSNPTASPSGKE
>CP024170.1|AZH78993.1|2372493_2372910_-|hypothetical-protein
MPAWWEQLLHITTGRISRHHELPDLRHLPTRPVVLERTHYLVNDRERDSQAPRTYILRTQPRTRRSPAGVAVTSNGRGVGHLPADAADAMGPLLDQLGGAAIVNGTGPQAGSIRLRIDLPAPDAVGKFIHALGNASSG
>CP024170.1|AZH78994.1|2374312_2375413_-|acyl-CoA-desaturase
MDGIRSTTPRSADRHGGRAGSEFTALAKTIRDQGLLRRRYGYYWSKLIGLPLVLAGGLLVFVWIGDTWWQLFTAVFLAVVFTQIAFLGHDSAHRQIFVSGKWNDWVSLVLGDLLVGMSYGWWQHKHTRHHANPNKLGSDPDIELPVIVVAPERAVPRGRVLSWLRSHQGIFFFPILLLEGVSLHASGVRRVVTRGPLSRRGVEIGFLLIRLVGFPVLVFLVLSPGIAFVFLAVQLGLFGFYMGVSFAPNHKGMPIVPRDASFDFLRRQVMMSRNVRGGRLLDTAMGGLNYQIEHHLFPSMPRPHLRKAAPIIAAYCRSHDVPYAQTGLLASYAIIVRYINRVGLGERDVFTCPLVEQRRYITAVPQ
>CP024170.1|AZH78995.1|2375446_2375986_-|hypothetical-protein
METQTRTSGADTATLGLGSVLVGSLPAALMTDEAPDRYTVEAVFTRRPERDEITEILGSETRERLAKAGYSTVEVAISDRRLEIANTNLEELRDGLGGVLADRLAEISEGVRARQDAAALRFREAAAGEHDRAASVAALAESVTFRTSGTRVSERDRRAAATDDRARIDDWTDEGGHGR
>CP024170.1|AZH78996.1|2377166_2378404_+|IS3-family-transposase
MNRKYSPEMRERALRMLAETRPSHPTMMSAVRHVAGLLGMSPETLRLWQRRYEVDAGVKPGVTTEAAAEIKRLQKEVSELRKANEILKAASVFFAKGARPPLTEMIQFINEHRDRFGVELICRVLRPAVQGFLTSRGYRAAVGRAPSARRLRDDLLVPEIARLHVENYGVYGRRKMHALMRRQGSEIGRDQTERLMRLAGVRGVKKSKRVFTTKSDRMLSLPQDLANRRFTADGPRRLWVCDVTYVATWSGFAYVAFVTDVYSRRIVGWNVAATLKAEILPLQALDMAAWGAGGDLTGLTHHSDHGSNYMAMVYTDRVVELGAVPSTGTVGDSFDNAMAEAVNNLYKTELIRQRGPWRTVEQVELATLEYVWWWNNQRLHGELDMRTPIEVEDAYYADLESAQPAPAGQGSR
>CP024170.1|AZH78997.1|2379186_2380266_-|amino-acid-oxidase
MIGGGIVGLSTAYALREQGVPVRLYEAGLPGTGQSAGESRIFRHAHDDPRLVAFARESRGVWDEWAEHFDVELVSSDGVLAIGDSALARLRVLDQVGGVEAHEIDAAEVAQRMPLLAGYSGPAVLDESGGAIRTRAAITALTGALADAVTTGEVISIDPRADGTVEVRSVTDRAVYSKVVVCAGRETARLARSVGLSLPVRLAAHVRLTFDVKAAAPARVACLQDSSGVFGEVGVYATPLPGNSSYSVGLSDTVGVRDDGTFIDPAAIRSLDERAREYVTRALPGLHPEPRDFLHCWVTDLPWSEDGVAVWEAGSVLFVAGHNLFKQAPALGRALARAATGGGLRAELTHEARLGEAQS
>CP024170.1|AZH78998.1|2380458_2380761_-|antibiotic-biosynthesis-monooxygenase
MSVTKGLLVRFEALPGKEDDVKEFLDSGRALVEDEQATTAWFAIRLGPSSFGIFDVFRDDAGRDAHLSGAVATALGEQTGTLFSEPTIEKLDVLGSKLPA
>CP024170.1|AZH78999.1|2380757_2381327_-|peptidase-C56
MTETLQGRRVAILAADGVERVELEKPREALEQAGAQTEVLSIHDGEIQARENDLDAAGTFTVDGLVADASVTDYDALLLPGGTVNPDQLRVDPDAVSFVREFVQSGKPVAAICHGPWTLIEAGVVEGRTLTSFPSIRTDLRNAGAHVVDQDVVVDGNLITSRSPDDLPAFSEAIVSQLAGTTTKKEEKS
>CP024170.1|AZH80429.1|2381328_2382495_-|aldehyde-dehydrogenase
MKAVVYEGPRQVSTKEVPDAKIERPTDVLVRVTTTNICGSDLHMYEGRTSFEVGRTFGHENMGEVIEVGSGVEKVRVGDRVVLPFNISCGFCKNCERGLTNYCLTTQPEPSFAGAAYGFADMGPYGGGQAELLRVPFGDHNALRLGEDAEEKENDYVMLSDVFPTGYHATEMAGVIPGDSVVIAGAGPVGLMAALSAMIKGAAKVMVVDRHPDRLALAEQIGAIAIDDSKVDPVQAVLDETMGLGADRGCECVGYQAHDPQGNEDTAATLNMLINSVRFTGGIGTVGVFLPQDPGGKDDLARQGKAAIDFGTHWFKGQTMGSGQAPIKRYNRQLRDLIAAGKATPSWIVSHEISLDQAADAYKNFDARSKGWTKVLIKPGMSTEKKAS
>CP024170.1|AZH79000.1|2383996_2386663_-|excinuclease-ABC-subunit-A
MDDFASASAHVQPDVRVRGAREHNLKDVDLTVPRDAMVVFTGVSGSGKSSLAFGTLYAESQRRYLESVAPYARRLIDQAGVPDVDSITGMPPAVALQQQRGGRSARSSVGSITTLSSVVRMLYSRAGEYPDGQPMLYAEDFSANTVQGACPECHGIGRVYEVTEARMVPDPSLTIRERAIASWPSAWHGHQLRDVLVALGYDVDVPWKDLPKKDRDWILYTDETPFVPVHSRLTLAEARRAIQAGIEPSYSGTFVGARRYVLDTFANTKSASMKRRVAQFMSAAVCPVCQGKKLKPEALTVTFEGLDIADFSALPLRELAELLVPVVAESDLEDETSGATIDVETRREAVAQRVAAGGSAHSAAPDVRRTPNRSAEKRAAAARLGAELLDRLRPIIDLGLGYLSLSRTTPTLSGGELQRLRLATQLTSELFGVVYVLDEPSAGLHPHDVTALLGILDGLKQRGNSLFVVEHSVDVMRHADWLVDIGPGAGERGGRVIYSGPTDGLADVDDSVTRGYIFGGSGLPPHEPRAAHDWLQLEHVTRNNLRDVSVALPLGTLTAVTGVSGSGKSSLVSQVLPALIGARHGDTRRIEEDNAEADDLLLADESDELGGSVEGDLTTVRRVVSIDQKPIGRTPRSNVATYTGLFDHVRRRFAETPEARARGYKPGRFSFNVAGGRCPTCEGEGSVMVELLFLPSVYTVCPDCHGTRYQSSTLEITWRGRNIAEILAMSVEEAHDFFAGEYDVMRSLTSLVDVGLGYLRLGQPATELSGGEAQRVKLATELQRAQRGDALYVLDEPTSGLHCADADRLVTHLQTLVDAGNTVVMVELDMRVVGAADFVIDLGPGAGDNGGTVVASGTPAEVAASRNSASAPYLAAALAEAATLTSGA
>CP024170.1|AZH79001.1|2388218_2389055_-|hydrolase-TatD
MASGRRLGRNQRTRAPRPCRTRTSGSDVINSALPALDAHAHIAPDVTPTQIAALGQSVVFAMTRSLQEARQVRNRRAPGLVWGVGVHPGVAAARASWDSKEFTDLLGSFALVGEIGLDRRGGDLSRQRSILHDLLTIVRNEPVLVSIHSTGATTEIVEHLHDASVPGAILHWFNGDAADIANAVEADAYFSVNAAMSEDRIRLLPRDRVLCETDFPARKARSRKPGDIRAIEDLLSRIWGESVEDVRAKTWWNLRTLSERSGAIERLPEPIADTLLYL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP024170_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024170_5

2471612-2471739

Orphan

Consensus_repeat	Method
TGACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP024170_5

>merge|CP024170|5|2471612-2471739|CRISPRCasFinder
TGACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACATCCCGTGGCATCGATTTTCAGTTATTTCGGGCCGACCGGAGGGGGTGAACCCCTTGACCCCCAGTCAAGTGCGCTACCAAGCTGCGCCACA

>CP024170|5|5|2471612-2471739|CRISPRCasFinder
TGACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACA	TCCCGTGGCATCGATTTTCAGTTATTTCGGGCCGACCGGAGGGGGTGAACCCCT
TGACCCCCAGTCAAGTGCGCTACCAAGCTGCGCCACA

Protein	Signature genes	Signature genes Name	Protein_function
CP024170.1\|AZH79075.1\|2476463_2477984_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|179525
CP024170.1\|AZH79069.1\|2470143_2471370_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP024170.1\|AZH80439.1\|2469378_2469948_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH79066.1\|2467060_2468857_+\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|378923
CP024170.1\|AZH79074.1\|2475496_2476402_-\|NTP-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|366006
CP024170.1\|AZH79076.1\|2477976_2478699_-\|cytidylate-kinase	unknown	unknown	gnl\|CDD\|236546
CP024170.1\|AZH79062.1\|2464933_2465293_+\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP024170.1\|AZH80440.1\|2473625_2474000_+\|RNA-binding-protein-S4	unknown	unknown	gnl\|CDD\|224109
CP024170.1\|AZH79068.1\|2469944_2470160_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
CP024170.1\|AZH79070.1\|2471850_2472441_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP024170.1\|AZH79072.1\|2472906_2473629_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377946
CP024170.1\|AZH79061.1\|2463883_2464879_-\|arsenic-resistance-protein	unknown	unknown	gnl\|CDD\|223869
CP024170.1\|AZH79071.1\|2472450_2472906_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH79065.1\|2466506_2467064_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH79067.1\|2468910_2469363_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
CP024170.1\|AZH79077.1\|2478691_2479831_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
CP024170.1\|AZH79063.1\|2465292_2465961_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223131
CP024170.1\|AZH79073.1\|2474063_2475476_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
CP024170.1\|AZH79064.1\|2465957_2466266_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH79078.1\|2479827_2480634_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|224108

Protein	Function_ID	Function_description	E-value
CP024170.1\|AZH79075.1\|2476463_2477984_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
CP024170.1\|AZH79069.1\|2470143_2471370_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.01941e-25
CP024170.1\|AZH79066.1\|2467060_2468857_+\|type-VI-secretion-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	1.74788e-30
CP024170.1\|AZH79074.1\|2475496_2476402_-\|NTP-pyrophosphohydrolase	gnl\|CDD\|366006	pfam00293, NUDIX, NUDIX domain.	1.22298e-10
CP024170.1\|AZH79076.1\|2477976_2478699_-\|cytidylate-kinase	gnl\|CDD\|236546	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed.	3.93783e-66
CP024170.1\|AZH79062.1\|2464933_2465293_+\|transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.0597e-16
CP024170.1\|AZH80440.1\|2473625_2474000_+\|RNA-binding-protein-S4	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	8.63202e-23
CP024170.1\|AZH79068.1\|2469944_2470160_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.2731e-10
CP024170.1\|AZH79070.1\|2471850_2472441_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.66132e-06
CP024170.1\|AZH79072.1\|2472906_2473629_+\|hypothetical-protein	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	3.33885e-12
CP024170.1\|AZH79061.1\|2463883_2464879_-\|arsenic-resistance-protein	gnl\|CDD\|223869	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism].	4.48935e-40
CP024170.1\|AZH79067.1\|2468910_2469363_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.26602e-14
CP024170.1\|AZH79077.1\|2478691_2479831_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	3.15441e-120
CP024170.1\|AZH79063.1\|2465292_2465961_+\|hypothetical-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	9.96984e-22
CP024170.1\|AZH79073.1\|2474063_2475476_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	4.8899e-08
CP024170.1\|AZH79078.1\|2479827_2480634_-\|MFS-transporter	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.14309e-85

>CP024170.1|AZH79069.1|2470143_2471370_+|site-specific-integrase
MPRKAEPLPHAQPKPVPPVGVRISTDLERRSYGIRARARWTDPISKRRIIRSEIVADEAAAHEFFDSLRQSSAKGMDVSMTLTEFVTTIGDRWARGLDPTSTGETYGYGLKLRVLPALGHLPVTQITAGIIDRTIDAWEKRHGASTIKNSIAPLARVLDEAVRDGLIPINPAKNRAKRSLNRNAFRLQPAEDTSPRAHAIPDMATLTKLAEDCGNIHQSYSDFVMLAALLAARSSEVSGLQAGDVRFDKNIVVIARQTYPGKGGLITKQTKGRRERRVPILNPLRPVLERLTEGKEPEDRLLVGPKGGALTTATVRDATNWDQIVSDLGLPDLTRHGLRHTGATWMADAGIPLHVLQDILGHASVETTRGYLHPDDRHLASAAEQANAFLARSAKASRPSRREASRSL
>CP024170.1|AZH79068.1|2469944_2470160_+|DNA-binding-protein
MSDTGGTIMVSPLMDSREIAAYLKVSESTLSRWRSAGQGPPFLRLGGIARYRIDAVDAWLAGLEHSHAQEG
>CP024170.1|AZH80439.1|2469378_2469948_+|hypothetical-protein
MNENDTAPETDEPDLDEADEFDGPLIPEPPHPINWNLLTSEEAEAEWLELNRWVDWLRATYGLPASVVPPFWHRHPELLWELSALHLHWLSAYDPEQNGSAPLGWHRDFADARQRLHDWVAASGTRLDRDRPTRQTTWPGEDPACPVEDTIIAYRDQDFVQFVLDDVAARRQAEDDFYAGLDPNTGEVA
>CP024170.1|AZH79067.1|2468910_2469363_+|single-stranded-DNA-binding-protein
MALHTQESVSGFIASDPQLTYTERGDARFYAKIGQEHYRKEPDGSFTQTETTFHDLVAFKKTAERAHDRLAKGDKFVAEGYTREYDRATPEGEVVKAEEFVAKKLGHDLARTSYEVDRTRRQPATTQEPVGQAAGAARRESSGAVPALGL
>CP024170.1|AZH79066.1|2467060_2468857_+|type-VI-secretion-protein
MSTPRPAASLGDELSNLGIGILIGTAVLAAILRGAGSVTAWITGVDQPTGGVEAGLGVLLNPGDPATALGAPGLSAVAYWITAIVLILGAGVVGWWAWRFFREHGRHVKTDPYRIAGIATRSEVAKAASETALLRRAGHLRPSLDKPRPQDIGYRIGASRGKTVWASVEDSILLIGPPRSGKGAHIVINAILDAPGAVVTTSTRPDNLTATLHARQKNGPVAVFDPQHLAEGLPAGLRWSPIRGCEDPLTAMIRATGLAAGTGLSAGGVEGGGFWEGKTRTALQALLHAAALDHRPPSELFRWTLDPSAAADAVAILTANPRAATGWADSLQAMTDSDPRTRDSIWQGVSLSLAALADPRVLDAVSPREDEDFDPEAFLRDRGTLYLLATGAGANNSAALVAAFVEDVVEAARRIAATSPGARLDPPLLLALDEVGNLAPLPSLPTLMAEGGGTGITTMPVLQSLAQAREKWSENAAGAIWDASIVKIVLGGASNSKDLHDLTTLIGERDEVTDSTTIGDHGSRSAQRSIRRVPIMPPDTIRTLPFGTALVLLRSAPPIVTRMRTWTDRPDAKELRAGRADIEATLQHRAAEPPGAPA
>CP024170.1|AZH79065.1|2466506_2467064_+|hypothetical-protein
MPRLRYKRSWGEPASRNGSAEPVPVVLPLAAITIADDGRMTVTVDGAPFEPEPFAPPWRREDFARVLDQLTDLRRSPMRVEVREADGTMFTDIITPSRRRRTEPDPEPASEAPGRRPATDLVVLHGEGFVPGEDVAVAVVIAHGDAAPDGTMRGLVESRQLAGSPTREVILLGRVSGTLTIGHPE
>CP024170.1|AZH79064.1|2465957_2466266_+|hypothetical-protein
MTNIGPLNGLPIACTLTRTAGKAQIGKWRAFDEDYALETERTDTRLTIRYAKVEDSITRLRELVAAESTCCSFVDWRIEEQHSDLRLVVTGSAQQLAALNVG
>CP024170.1|AZH79063.1|2465292_2465961_+|hypothetical-protein
MSAPTLTDERRAHLHRRVRFIVFFTITWNVIEAAIALSAGTVASSAALIGFGLDSVIEVASAAAIAWQFTRKDPERWEKATVRVIGVAFFALAAYVAVDAILALTGIRDPDHSPVGIGIAIASLIVMPALAWFEFRTGRELRSKSVQADAKQLLLCIYLSGTVLIGLVLNSLLGWAWADSIAALVVAGLAIREGIEAWRGDIESPFEVLEDLDHDDHEEITP
>CP024170.1|AZH79062.1|2464933_2465293_+|transcriptional-regulator
MLTLASRVDVMNRLGRAMADPTRSRILLTLLEQPGYPAKLARDLDLTRTNVSNHLSCLRGCGIVVAEPEGRQTRYEIADPHLTAALVALVDVTLAVDESAPCLDPACSVPGCCDTEATA
>CP024170.1|AZH79061.1|2463883_2464879_-|arsenic-resistance-protein
MRTAVEWMERWQVPLYLAALVVGAGIGLLIPAIAHSAELAINPVLGLLLYVTFLGVPFVKIGQSFRDWRFLVTVLVVNFVAVPIVVFLLSRIVAHDQVLLVGVLFVLLTPCVDYVIVFTGIAGGAKDRLIAAAPLLMLAQMLLLPLYLGLFVGAEFVATVDLAPFIEAFLLLIALPLVAAGLTQLAAARTRWGVAIQGTVLGAMVPLMMLTLSVVVASQIAGVGRQLGVLVLAIPVYVLFAAVMVPIGAVAGKVARIDVPGRRAIVFSGVTRNSLVVLPLVLALPAAFDLAPLVVVTQTLVELIVMVVFVRLIPRLLPDDIDTANSRLQMP
>CP024170.1|AZH79070.1|2471850_2472441_+|GNAT-family-N-acetyltransferase
MVTITTELATPPRWDDVQHALTGGGDGASCQCIWPMLRNKDWNATTTPQRAEMFRAEIDAGPPPGLVAYVDGEAAGWIRIGPRTTQARVQHTRIIAAATEEPFDDDSVWAVTCFVVRREHRGSGLNLDLLRAAVSYARESGARVIEGYPVDTRGERQPSNDLFHGTLGTFLAAGFREQAELKPGRTLVALDLATTR
>CP024170.1|AZH79071.1|2472450_2472906_+|hypothetical-protein
MSDENPTIDDPALGTLVRARSELTDGTVLTHDWFVGTVTVDGAELELMVEGTTPDEVLPLLPRLRDTVARLDELRRVATDAVVTNFSTGEPEPSELDDAATDLVLETIEASSDGGIVLHLTDSCGEHFPEEYWPAVHFGADGAVEKVTVES
>CP024170.1|AZH79072.1|2472906_2473629_+|hypothetical-protein
MTASSPSSPLAGRAADDGSPRGAASTGLLWAFAPFIAVSILHVVLLAVESPLAGPTKLLLMPLLAVPVVLSARKLVPRSALLMLLAALLFSWLGDGAGAFFPTAPELPLMLLFFGIAHVAYILLFARHLAMRRMPWWALIYVAWWVAMIAILGPHTGVLLIAVAVYGLVLGGTAAFSARCHPLVALGGAFFLTSDTILAFRLFLPDALPSWSSPAVMLTYTTGQGLIVAGALLSLRKAAA
>CP024170.1|AZH80440.1|2473625_2474000_+|RNA-binding-protein-S4
MMDAVRVDSWLWAIRVYKTRSAATTACRAGHVRVNGDKVKAAQQVRIGDELRIRIAGFDRILIVRQLLVKRVGAPLAALAYEDRTPEREPQAALGVRDRGAGRPTKRERRDIDKLRGRDELPPY
>CP024170.1|AZH79073.1|2474063_2475476_+|HNH-endonuclease
MSRPTDIDLDLEERRRVLDAWVSKKREIARLEAEAAELLIEQIALHDSEVSATPFHRDAIYRSMVAEFSAAGHVSKGSIEFAFADARALLTHLPEVRSAFAAGSLSAAHVREIARASALVDEAIRNRKADPAVMALFEAAVLVVAERDTAARTRAHARQVAAALTGETLLDRHRRAASERSVTVKPLDDGLALLTAVLPEWVANAIADRLSRLTREVVRARNTREFRPSPSWSEESDTISPRDIDLDDPAFDGFEEAVIASGDTFATDPEVEHFPTDDRTWAQIQADLFSDLLLTADPSAAHGTALDGIHARVQVTVAASTLTGADDRPAQLDGHGPLHPDVARELAGRNTGWSRLFLDAQGMVVETDTYTPTESMRRFLRARDQHCRFPGCRMPVHRCDIDHNHDRALGGRTRLDNLGHFCRAHHTLKHPDIPDAHRWTAHQERDGSITWHSPLGRDYSDPPPRRVMFV
>CP024170.1|AZH79074.1|2475496_2476402_-|NTP-pyrophosphohydrolase
MTVVPPAAGEPRRPEGPRDPGDAWVVADTGERYWGRFGAAGLLAYDAARGILLQHRVSWSHFGGTWGLPGGALHEDETAIGGAIREAQEEAGVPDGAVRPLFTSVLDLGIWSYTTVVADVVDPFDPVISDPESVALEWVPLDAVDGRPLHPGFAAAWPVLRQQLAERPVLVVDAANVVGSVPDGWWKDRAGAASRLRSRLEGLAVPAGALDLGGDVWFPAVSLVVEGQARGIEAGSGGVSVVEAEGAGDDAIVAEVERRIADGRTVVAVTSDRELQERVARAGAARVRSAGWLRGLLENRD
>CP024170.1|AZH79075.1|2476463_2477984_-|ribosome-biogenesis-GTPase-Der
MADDEYEGGPDQLAEKMDQLDEQLAEQRAETLRAGLADYELDDEDAELLAGITLGEDGIQYSPALPVVAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWADRRFSLVDTGGWEPDARGIDRSVAAQAEVAIDLADMVLFVVDAMVGATSTDEHVVKLLRKSGKPVFLVANKIDDARQEPEAAALWNLGLGEPHPVSAIHGRGVADLLDEVLKKLPEVSAVAKQEIGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNDLAGTTRDPVDEVVELGGKMWRLVDTAGIRRRVHMAQGADFYASLRTSAALEKAEVAVVVLDVSESISEQDVRIIDLVLESGRALVLAFNKWDRLNDDDLENADRRRYLEREIEQDLAHVAWAPRVNISAKTGRHLDKLVPALETALENWDRRIPTGKFNAFLAELVAEHPHPLRGGKQPRILFGTQASTRPPTFVLFTTGFLDPGYRRFIQRRLRELYSFEGTPIVINMRVREKRQR
>CP024170.1|AZH79076.1|2477976_2478699_-|cytidylate-kinase
MTDLSSSPTSEASVTDAAKFIAIDGPAGSGKSSVSKAVARTLGYGYLDTGSAYRALAWHVLDRGADTDDAEAVRAAASDFPVRLGLDPDDRTVRVGEAEVTDAIRDPRVSGAVSGVARVPEVRAQVNELFRRLVSEAPYPAVVVEGRDITTVVAPDAPVRILLTAAPEVRAARRAGELAGENAAAVAAALHKRDASDSAVVDFLNAAEGVEVVDSTELDFPQTIDAVLTVIERLRGAHRG
>CP024170.1|AZH79077.1|2478691_2479831_-|prephenate-dehydrogenase
MTDTTSAPAGPRRAGFVAPRLSGTVRIVGAGLLGASVGHALRAKGIDVVLTDASPAQLRLAVDYGAGRVPADDDHPSLIVVAVPPDVTADVIQAELERFPEAVVTDVASVKLEPFRTLRARGVDLTRYIGSHPLAGRERGGAISARADLFIGRPWVVCRDEETKASDLALVEALALDVGAMPLEMTPEEHDRSVALTSHVPQVVASLLAARLAGAEEGALRLAGQGVRDTTRIAASAPELWVQILGANAGPVVEILDALAADLGEISDALRQPAAPGARRIVAEAIRQGNDGVERLPGKHGQNRRFETLVVMVDDTAGQLGRLFGELGELGVNVEDLRLEHSPGAQFGLAEISVDPAALHGAITGLQERGWRIAGNTND
>CP024170.1|AZH79078.1|2479827_2480634_-|MFS-transporter
MTGFDASTDSGAAPEGVRLQKVLAAAGVASRRVVEQYIVEGRIRVNGIVVSELGRRIDPENDLVDVDGTAIQLDVSKRYVMLNKPTGVVSSMKDENGRPDLRRFTADYEERLYNVGRLDAETSGLLILTNDGALAHVLAHPSFGVTKVYIAKVEGTVLPQTITKLTKGIELEDGPIAADKARLLDTSRGSSLVELTLHSGRNRIVRRMMAAVGHPVTELVRRQFGPLHLGTLPAGKARELSKIELGALLTLSRRDSGVAEAPGEQENE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP024170_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024170_8

3708981-3709142

Orphan

Consensus_repeat	Method
CCCCGACCCCCGGTCGATCCCCCGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP024170_8

>merge|CP024170|8|3708981-3709142|CRISPRCasFinder
CCCCGGTGCACGGTCGATCGGCGGCAACGAGCTGTTCGACGTGCGCACCCGCCTGCAGCACACCGTCCGCTTCGTCTGATCCCCGACCCCCGGTCGATCCCCCGACCCCCGGACGATCCGCCGACCCCCGGACGATCCCCCGACCCCCGGACGATCCCCCGA

>CP024170|8|8|3708981-3709142|CRISPRCasFinder
CCCCGGTGCACGGTCGATCGGCGGC	AACGAGCTGTTCGACGTGCGCACCCGCCTGCAGCACACCGTCCGCTTCGTCTGAT
CCCCGACCCCCGGTCGATCCCCCGA	CCCCCGGACGATCCGCCGACCCCCGGACGATC
CCCCGACCCCCGGACGATCCCCCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP024170.1\|AZH80181.1\|3704266_3704710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378551
CP024170.1\|AZH80184.1\|3706090_3707386_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP024170.1\|AZH80528.1\|3714322_3716356_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH80193.1\|3718460_3719261_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP024170.1\|AZH80183.1\|3705470_3706094_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP024170.1\|AZH80176.1\|3698317_3699472_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380649
CP024170.1\|AZH80177.1\|3699537_3701079_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184134
CP024170.1\|AZH80188.1\|3711583_3712480_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP024170.1\|AZH80190.1\|3713333_3714317_+\|glycosylase	unknown	unknown	gnl\|CDD\|350122
CP024170.1\|AZH80192.1\|3716900_3718352_+\|catalase	unknown	unknown	gnl\|CDD\|365942
CP024170.1\|AZH80185.1\|3707429_3708083_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|129359
CP024170.1\|AZH80178.1\|3701075_3702254_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
CP024170.1\|AZH80191.1\|3716414_3716837_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
CP024170.1\|AZH80182.1\|3704831_3705440_+\|hypothetical-protein	unknown	unknown	unknown
CP024170.1\|AZH80195.1\|3719887_3720376_-\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|234692
CP024170.1\|AZH80194.1\|3719348_3719891_-\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|237597
CP024170.1\|AZH80187.1\|3710313_3711579_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
CP024170.1\|AZH80180.1\|3703467_3704244_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP024170.1\|AZH80189.1\|3712476_3713319_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP024170.1\|AZH80179.1\|3702292_3703471_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
CP024170.1\|AZH80181.1\|3704266_3704710_-\|hypothetical-protein	gnl\|CDD\|378551	pfam11070, DUF2871, Protein of unknown function (DUF2871). This family of proteins has no known function.	7.9946e-53
CP024170.1\|AZH80184.1\|3706090_3707386_-\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.78029e-50
CP024170.1\|AZH80193.1\|3718460_3719261_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.65042e-22
CP024170.1\|AZH80183.1\|3705470_3706094_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.13305e-67
CP024170.1\|AZH80176.1\|3698317_3699472_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380649	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system. Periplasmic aldose-monosaccharides binding protein ChvE that belongs to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	2.73127e-146
CP024170.1\|AZH80177.1\|3699537_3701079_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|184134	PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional.	0
CP024170.1\|AZH80188.1\|3711583_3712480_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.41842e-67
CP024170.1\|AZH80190.1\|3713333_3714317_+\|glycosylase	gnl\|CDD\|350122	cd18610, GH130_BT3780-like, Glycosyl hydrolase family 130, such as beta-mammosidase BT3780 and BACOVA_03624. This subfamily contains glycosyl hydrolase family 130, as classified by the carbohydrate-active enzymes database (CAZY), and includes Bacteroides enzymes, BT3780 and BACOVA_03624. Members of this family possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. GH130 enzymes have also been shown to target beta-1,2- and beta-1,4-mannosidic linkages where these phosphorylases mediate bond cleavage by a single displacement reaction in which phosphate functions as the catalytic nucleophile. However, some lack the conserved basic residues that bind the phosphate nucleophile, as observed for the Bacteroides enzymes, BT3780 and BACOVA_03624, which are indeed beta-mannosidases that hydrolyze beta-1,2-mannosidic linkages through an inverting mechanism.	8.59827e-141
CP024170.1\|AZH80192.1\|3716900_3718352_+\|catalase	gnl\|CDD\|365942	pfam00199, Catalase, Catalase.	0
CP024170.1\|AZH80185.1\|3707429_3708083_+\|YigZ-family-protein	gnl\|CDD\|129359	TIGR00257, IMPACT_family_member_HI_0722, uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ. [Unknown function, General].	1.6042e-56
CP024170.1\|AZH80178.1\|3701075_3702254_+\|ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	4.22038e-122
CP024170.1\|AZH80191.1\|3716414_3716837_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.78578e-34
CP024170.1\|AZH80195.1\|3719887_3720376_-\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.18358e-86
CP024170.1\|AZH80194.1\|3719348_3719891_-\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.59861e-108
CP024170.1\|AZH80187.1\|3710313_3711579_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.76929e-54
CP024170.1\|AZH80180.1\|3703467_3704244_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.48976e-96
CP024170.1\|AZH80189.1\|3712476_3713319_+\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.78114e-65
CP024170.1\|AZH80179.1\|3702292_3703471_+\|transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.8623e-54

>CP024170.1|AZH80185.1|3707429_3708083_+|YigZ-family-protein
MTSARVYPATIAAAVEHELVIRKSRFVTRIAPVSSVEEAEAVIARIRKQAWDANHNCSAMVTGLLGDQARSSDDGEPSGTAGIPMLEVLRRRELTDAVAVVTRHFGGVKLGAGGLVRAYASAVSEALDRATLVRRAALRQVTIEVPHGDAGRIDNLLREWAVSHGATLGETTYAATVVLELWVPESALPRLADDLAAASAGSLTPVPGLERIVDLPV
>CP024170.1|AZH80184.1|3706090_3707386_-|histidine-kinase
MDAAAHGQEKNVIMPHIEPSRPPRTWASLVGSIRIGQAAITMVLLVIGAWRAAVDGVPIPGVLAIALVFLGWYGGGLLLSERTADRRLAAGWLLGLTLIWLGAVVVSPEFVWLAFSLWLLAGFVLRLRWALLLSAAILAVVVTAPLAHTGATTYANVIGPLVGGVFALGISRGYLVLVRDGRERRRLIASLVATQEEMAALQDELARTQRASGAIEERTRVSRDIHDTVAQSLSSIGMLARSARESHDPARSARALEQIDALAGEGLADARRIVQALMPAELESTALGDALARLLARLAEETGIRTTLHADDELPALGIDAEIALLRTAQSALANVRSHASASRVVVTLSDAGDTVRLDVVDDGIGFDVRHWDAQGGRGGDGGGYGLRSMRARLRELGGGLDVESAPGDGTALSAHIPLGGTRGHGAGDDV
>CP024170.1|AZH80183.1|3705470_3706094_-|DNA-binding-response-regulator
MTPISVLLVDDHPIVRAGVRSLFDQRDDVRVVGEAASGEEAVALARHLHPDVVLCDLRLGTGLDGVQTTAVLRSLDPAPAVLILTTFDRDAEILGAIEAGAAGYLLKDIAPEEIVRAVRQAASGGPVLTPELSDRMGRVLRAPRVRLTERERDVLRLLGTGASNREIAKTLFVTEATVKTHLVHVFEKLGADSRSRAIAIARETGLL
>CP024170.1|AZH80182.1|3704831_3705440_+|hypothetical-protein
MTFFPPDPDLPEPEEADSERQPWWQAPDDELPVLLPVSETLASTEHLALGLFGVAVYSDGVEFRLEGRLRRKGLPAREWNDLCADFVGHSPLGGPVHPAGRLRFGLVLGDGEKVLAEGFPFFGGDDPSAEQEGHTLSRNSGGAGGGPQGYSSTDRLWLWPLPPEGPIEFVMQWPALGVEERRVVLDGSAMRALASRVQRFWS
>CP024170.1|AZH80181.1|3704266_3704710_-|hypothetical-protein
MRRLFTAAFASMLVGVASGLFYREFTKINDFPEGQATQLGLVHTHLLVLGFVVLLIVLLLEKAFALSESRLFGWFFWTYNAGLVLTSAMMVWHGCLTVLGLESSKMIAGIAGMGHILLSAGMVMLFLMLRTRITAAERTDRLPAAVA
>CP024170.1|AZH80180.1|3703467_3704244_+|sugar-ABC-transporter-ATP-binding-protein
MSFTASQAEPLLTMRGVTKRFGAVEALTDVDFTVNAREVVGLVGDNAAGKSTLAKIIAGALDPTSGEIRINGEQVEISSPAEANRLGIATVFQDLAVCENLDVTANVFLGRELRTAKGMLREPEMEQATKQALSDLAANIPSIRSPLNSLSGGQRQAVAIARTLISRPRLVVLDEPTASLSVAQTADVLTHIEQLRELGLGVVFISHNIADVQAVSDRVEVLRHGRNNGSFQSQDAAYSDLIAAIIGTYRGPSAPPRG
>CP024170.1|AZH80179.1|3702292_3703471_+|transcriptional-regulator
MSRWASGSQSGLREANTAKIVDAVKRFGGLTQVELAEATSLSTATVSAIVKELSLSGLVETRPTSRSGRRAQLVTIARRAGLVAAVQIGSRSMKVRLTDVGQDVLADRSMPLPADHAEDTVLDRITLLLIDMLGMIAADADDLIGVCIGVPAPVDPASGLIAYPGVMRRWESQPVAQVVEQRLGCPVLVEKDANLAALAEATLGTARDVADSLFVHASYTASAGVVLGSRLYRGRSGTAGEIGHVQVDPTGSICACGQRGCLETVVGADAITAPLRATYGQVTFKDVIARAAEGDPGCARVVADAATALGRVVAGVHQALAPEVITVGGELTEAGPIFLLPFTSALRDTAPQGRSPRRDPVPSSFGKDAVLVGATIHILQSTDPSRLLEDRS
>CP024170.1|AZH80178.1|3701075_3702254_+|ABC-transporter-permease
MNGVTNLFTLATRNLRQSGILVAFVAIVAFFAILNPAFLSAGNLTNIVLQYSYILILAIGMVIVIIAGHIDLSVGSVVALTGATAAVLVIRMQQPWWVGVIAALVVGLLVGAWQGFWVAYVGIPAFIVTLAGMLLFRGLTFIVLSNVSLSPFGGTYYAIANGFFNGLLGGYGVDVFTLVIFAIGVVGYAVWQVRGRRSKISHQQSVEALPWFILKIVAIAAVVMWFGYQLSTSRGLPFVLILLAVLIIAYSVITQKSVFGRHVYAIGGNLHAALLSGVNVRRVNFWIFVNMGLLAGIAGVVFSSRTNGAQPGAGNMFELDAIAACFIGGAAVTGGVGRVGGAIVGGLIMAVMSNGMQLMGLDQATQQVVKGLVLLIAVAFDVWNKRRTGAAR
>CP024170.1|AZH80177.1|3699537_3701079_+|ABC-transporter-ATP-binding-protein
MTTPVLQMREIEKSFPGVKALQGVSLDVQRGEILAICGENGAGKSTLMKVLSGVYPHGTYEGEIIYEGEEATFSSIADSERVGIVIIHQELALIPHLSVAENIFLGNERRGTGGLIDWDRANAEASALLAQVGLDENPTTPVGQLGVGKQQLVEIAKALSKSVRLLILDEPTAALNDTDSAHLLDLLRRLRDDGMTSIIISHKLNEIAAIADRTTIIRDGRTIETLDMRDPESTQDRIIRGMVGRDLAHRFPERTPQIGEEVLRIEDWTVHHPTQPGRVMVDGATLTVRAGEVVGIAGLMGAGRTELAMSVFGRTYGRGARGRVLMHGKEVDTSTTSAAIRAGIAYATEDRKKFGLNLIDDIRHNITMASLRMISPGGWINAHRELEIAERYRAEMNIKSPTVLQLVGNLSGGNQQKVVLSKWIQTKPEVLILDEPTRGIDVGAKYEIYTIINRLVAEGKGVLVISSELPELLGICDRIYTLAFGRITGELPAAEATQEKLMHLMTVERTTAP
>CP024170.1|AZH80176.1|3698317_3699472_+|sugar-ABC-transporter-substrate-binding-protein
MKKKYALAALGLAGIVALAGCGGGGAGSTGGSGAEGSGDKGDLLIGVSMPTQTSERWIADGNAVQDGLEEAGYQVDLQYAGDDIPTQGQQIDQMITKGADLLVIAAIDGTALSSQLDAAAAANIPVISYDRLIRDSEHVDFYVTFDNYKVGVQQATSLLTGLGVLDEDGKETGEKGPFNIELFAGSLDDNNAHFFWQGAMDTLQPFIDDGVLAVPSGQTDIEQAAILRWQQETAQKRMEDLLTSTYAGGTKLDGVLSPYDGLSRGIITALQGTGGLGPAIADGLPIVTGQDAEIGSVALINQGVQFASIFKDTRKLAEQSVVVAQAILEGEEPEANDTETYDNGVKVVPSYLLQSDIVYKDNITPLLVDSGYWTQAEVDSGVAE
>CP024170.1|AZH80187.1|3710313_3711579_+|sugar-ABC-transporter-substrate-binding-protein
MKKIRAAALIGAVALVATGCSSGGGGGEGAAEGTGPIDVWLSNNEQEVAWGQAVVEAWNADHPDEKVTAQEIPAGSSSEEAITAAITAGTAPCLVYNVAPAAVSGWVKQGGLVDLSTMEGGSDYITERGGEVDAYATDGKFYQLPWKSNPVMVMYNKALFEAAGIDPDDPQMNTYDAFLEGSRKIVESGVQSAIWPAPTSEFYQPWFDFYPLYLAETDGTMLVEDGKATVDSDDGRTVSEFWRTFYEEKLAPNEAATDDAMSAGTTAMQLAGPWAIPSYAETVDVGFMPVPTSDGREDPITFADSKSVSMFTACENQATAWEFLKFSTSVDSDGQFLEATGQMPMRTGLTDAYADYFSANPDYVAFAEQAERTADVPSIPNSVEAWQAFRDEYSSAVIFGKESIDDYLKNAASKIDDLVAE
>CP024170.1|AZH80188.1|3711583_3712480_+|sugar-ABC-transporter-permease
MTDKRRLRTRWFGAQPIGGLFALPYFVFVIAIFAYPLAFAVYIAFHDYFFTAPGTEVDRPFVGFDNFVTVLTDPRVLGSFRNTLIFLVINVPLTAVLALVLAAALNTGIRWVAAYRVAFYVPYLTASVSLVGVWMLLFSGNGLVNTILGPLAPDPSWLVNSGLAMPMIALYVTWKQLGFYILLYLAALQNVPKELYESAETDGAGALSRFWNVTVPGVRSATTLVLILSIITGANLFTEPYLLTNGGGPDGASTTPVLLIYQLGIQQQNPDTAAAIGMILVILVGMLSLAANRATRER
>CP024170.1|AZH80189.1|3712476_3713319_+|sugar-ABC-transporter-permease
MMRRRRSLPRILSIVLLTIAAIGFAFPFYFMVVGAFQESPTNSPSALLPTSGWTVDNFVAIDSRIDLVGSLLNSLIFTAGVLLGTVVFGLLAGYAIARLDFRGRGVIWVLMLLVQMVPFQLLMIPLYVQITRSYGLGDSYLGMILPFLINTTAVFIFVQFFKALPVEIFEAARIDGAGEIRLLTSVALPLIRPVLVTVVLVTFIGPWNEFLWPFLITKDASLQPLAVSLANYISNVAQSTANPNGAILAGATALAFPVVILFVVFQRFFKATDLGAAVKG
>CP024170.1|AZH80190.1|3713333_3714317_+|glycosylase
MFTGASFPLGPFTPYAGNPILRPRGASWESANLYNPAALVDGDEVILLYRAHADDIISHIGLARSRDGVTFTREDAPILSPSEEYEQYGCEDPRIALIDGTYYLTYTGWDRRSAQLCLATSTDLRTWTKHGPLFDDFDTFKTMDPRGFNWSKAGVIVPRRMHGKWWMYFGEGAIYWATSDDLIHWTPGTADTDPMYSPTPGTWDEALVEIGTSPVLADNGLLVFLTNGATRVVYEDGTVEVDYRCGQIAIDPDEPTKVIARLQEPWLRPQTFEDMHGLVSNVTFVEGLVKFHGRWFAYYGQSDTTLAVAIHDPAEPWGRALRDDGEA
>CP024170.1|AZH80528.1|3714322_3716356_+|hypothetical-protein
MDTSRRSFLALAAASSALALLPVDAAVGATDPMGTATPLPAVARRSRLTNLAHLRFLLAEVPIAPSDAHTTFGIDTNPTVRAPWTYADADGAGGYRPVGGGTRDAATGHWTQGAYNADDIARAAVVFLRDWRATGDGQSRDEARDVLRALAFLQTASGPNTGRVVLWQQEDGTLNPSAIPVELPDPSDSAESYWLARTVWAFGEGYAAFRREDPDFAAFLLARLHLCLDALGRESLSRAGRWVRSDGRNLPAWLIAGGADATAEAMLGLAAATEAGDARSRAALRTYGEGVAAMATDPANGWPFGAVLPWTGSLGFWHAWGAAAPEALARAGAVLRRREWSAAALADAGRFTPQVLASGGPHNAWAPLPAEAQIAYGAHGRVAGALQAAAVGGVGLRGLAGLAAGWFFGANTAGVPVYDPATGVTYDGVETDGRVNRNSGAESTIHGLLTMLLLDADRDVAAIATSITGLTSHSGLRAVDAETARLSPGCVIERPDGGAWTGEGNLSGGAYVRIPRGEWVEFDVTEAGGILHALVWRQAADAGEAEWEVRRGGRRVWRARTAAGGVGDRGLTEAEGMLVPQLLGGDLPEAAVTVRCTSRGEVRLDALVIQPRVASAVYATTSGVTVLYANGTRREVRVAPLAPGDGRAYDADGADRGRAAAGGRVRVRGAGFTITRG
>CP024170.1|AZH80191.1|3716414_3716837_+|transcriptional-repressor
METELDSALRGAGLRATAGRVAVLEALDSMAHTDAERVYRAVSEVLPTTSIQSVHNILADLTTAGLIRRIEPAGSAALYERRIDDNHHHIVCTSCGAIGDVDCVVGEAPCLTPSSTGGFTVQTAEVTFWGLCPSCQNAAQ
>CP024170.1|AZH80192.1|3716900_3718352_+|catalase
MTRPATTTQAGAPIASDTHSLTVGADGPTVLHDHHLVEKIAAFNRERVPERNPHAKGGGAFGEFVVTEDVSAYTRAAVFQPGATSETLLRFSSVAGEQGSPDTWRDVRGFSLRFYTTEGNLDIVGNNTPTFFLRDAMKFPDFIHSQKRLGDSGLRDADMQWDFWTLSPESAHQVTYLMGERGLPRSWRHMNGYGSHTYSWVNAAGEVFWVKYHFISHQGVEAMSPDEAEKLAGTDADHYRRDLFQSISDGDFPKWDLYVQIMPYDEAKDYRFNPFDLTKTISKKDYPRIKVGTLTLNRNPENFFAQIEQAGFAPANQVPGTGISPDKMLLGRIFAYPDAQRHRIGPNYNQLPVNQPHASEARNYQHEGSMRYQFNDAAHRTYQPNSFGPAGGPEADPAKGIEINWEADGELTRSAATLHAEDDDFGQAGTLYREVFDGPQRARFLETLTGQGRSITIDEIRERFFQYWTNVDAELGAALRDRV
>CP024170.1|AZH80193.1|3718460_3719261_+|alpha/beta-hydrolase
MAVSLSDLTEMPDPQHVYAADGTRLATYTWGELDAPVVVTVHGFASGARDNWVLTGWVRELTRAGYRVLALDQRGHGQSEKPHESDAYAIRNLVTDVETVMDTYLVDDAFYLGYSLGARVGWEVARELPHRIGRAVLGGVPDGIPLARLDLDQVRAYIADGTPVEDRTTQNYIALTERVPGNDLRALIALAEGLRGSGTIDPDPADAPVVPLLFATGSKDAIIEGSRALAAAAPDARFVELPNRHHFNAPGSRDFKQAALGFFAES
>CP024170.1|AZH80194.1|3719348_3719891_-|peptide-methionine-(S)-S-oxide-reductase
MTDTGTITRTPGTETAVLAGGCFWGMEDLIRRQPGVLDTRVGYTGGENDHATYRNHPGHAEAVEIVFDPSKTTYRDILAFFFQIHDPSTLNRQGNDIGSSYRSAIFPLTPEQEQVARDTIADVDASGLWPAKAVTTIEPAGPFWEAEPEHQDYLIKYPNGYTCHFPRAGWVLPKREEATA
>CP024170.1|AZH80195.1|3719887_3720376_-|peptide-methionine-(R)-S-oxide-reductase
MSNDHAKTPEAVSALTPLQYQVTQQDATEPPFRNAYWDNHDDGIYVDVVSGEPLFSSTDKFDSGTGWPSFTKPIDAAAVTTRTDRSLWMKRTEARSAGADSHLGHVFDDGPRAEGGLRYCMNSAALRFIPAEDLEKEGYGRYSPLFAQNPDSATTDTSEEQS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP024170_7	7.1\|3175185\|27\|CP024170\|CRISPRCasFinder	3175185-3175211	27	CP024170.1	3175293-3175319	1	0.963
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	CP024170.1	3215888-3215908	2	0.905
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	CP024170.1	3247872-3247892	2	0.905
CP024170_7	7.1\|3175185\|27\|CP024170\|CRISPRCasFinder	3175185-3175211	27	CP024170.1	3175272-3175298	2	0.926

1. spacer 7.1|3175185|27|CP024170|CRISPRCasFinder matches to position: 3175293-3175319, mismatch: 1, identity: 0.963

ggtaggcggctcagggacccaggtagg	CRISPR spacer
ggcaggcggctcagggacccaggtagg	Protospacer
**.************************

2. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to position: 3215888-3215908, mismatch: 2, identity: 0.905

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgaggccgtggt	Protospacer
***********  ********

3. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to position: 3247872-3247892, mismatch: 2, identity: 0.905

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgaggtcgccgacgtggt	Protospacer
****** ******* ******

4. spacer 7.1|3175185|27|CP024170|CRISPRCasFinder matches to position: 3175272-3175298, mismatch: 2, identity: 0.926

ggtaggcggctcagggacccaggtagg	CRISPR spacer
ggtcggcggctcagggacccaggcagg	Protospacer
*** *******************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	217750-217770	0	1.0
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP027023	Streptomyces sp. WAC00288 plasmid p1, complete sequence	17055-17075	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	192168-192188	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1215386-1215406	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	630155-630175	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP026539	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence	97750-97770	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	11436-11456	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	91006-91026	1	0.952
CP024170_6	6.1\|2949206\|21\|CP024170\|CRISPRCasFinder	2949206-2949226	21	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3925103-3925123	1	0.952
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	68816-68847	6	0.812
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	MT986025	Gordonia phage GrootJr, complete genome	28167-28198	9	0.719
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	MH779501	Gordonia phage Emianna, complete genome	28785-28816	9	0.719
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	MH727547	Gordonia phage Foxboro, complete genome	29291-29322	9	0.719
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	MH779510	Gordonia phage Kurt, complete genome	28800-28831	9	0.719
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	MT889393	Gordonia phage NovumRegina, complete genome	28166-28197	9	0.719
CP024170_8	8.2\|3709086\|32\|CP024170\|CRISPRCasFinder	3709086-3709117	32	MH536824	Gordonia phage NatB6, complete genome	27836-27867	9	0.719

1. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 0, identity: 1.0

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgccgccgtggt	Protospacer
*********************

2. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP027023 (Streptomyces sp. WAC00288 plasmid p1, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgacgccgccgtggt	Protospacer
******** ************

3. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgccgccctggt	Protospacer
**************** ****

4. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgccgccctggt	Protospacer
**************** ****

5. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgccgccctggt	Protospacer
**************** ****

6. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP026539 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgacgacgtcgccgccgtggt	Protospacer
** ******************

7. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgacgccgtggt	Protospacer
*********** *********

8. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgccgccctggt	Protospacer
**************** ****

9. spacer 6.1|2949206|21|CP024170|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 1, identity: 0.952

cgccgacgtcgccgccgtggt	CRISPR spacer
cgccgacgtcgccgccgcggt	Protospacer
*****************.***

10. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

cccccggacgatccgccgacccccg-gacgatc	CRISPR spacer
cgcccggccgatccgccgacgcccgccacgac-	Protospacer
* ***** ************ ****  ****.

11. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to MT986025 (Gordonia phage GrootJr, complete genome) position: , mismatch: 9, identity: 0.719

cccccggacgatccgccgacccccggacgatc	CRISPR spacer
accccgggcgatctgccgacccccgagcagaa	Protospacer
 ******.*****.***********..*..

12. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to MH779501 (Gordonia phage Emianna, complete genome) position: , mismatch: 9, identity: 0.719

cccccggacgatccgccgacccccggacgatc	CRISPR spacer
accccgggcgatctgccgacccccgagcagaa	Protospacer
 ******.*****.***********..*..

13. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to MH727547 (Gordonia phage Foxboro, complete genome) position: , mismatch: 9, identity: 0.719

cccccggacgatccgccgacccccggacgatc	CRISPR spacer
accccgggcgatctgccgacccccgagcagaa	Protospacer
 ******.*****.***********..*..

14. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to MH779510 (Gordonia phage Kurt, complete genome) position: , mismatch: 9, identity: 0.719

cccccggacgatccgccgacccccggacgatc	CRISPR spacer
accccgggcgatctgccgacccccgagcagaa	Protospacer
 ******.*****.***********..*..

15. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to MT889393 (Gordonia phage NovumRegina, complete genome) position: , mismatch: 9, identity: 0.719

cccccggacgatccgccgacccccggacgatc	CRISPR spacer
accccgggcgatctgccgacccccgagcagaa	Protospacer
 ******.*****.***********..*..

16. spacer 8.2|3709086|32|CP024170|CRISPRCasFinder matches to MH536824 (Gordonia phage NatB6, complete genome) position: , mismatch: 9, identity: 0.719

cccccggacgatccgccgacccccggacgatc	CRISPR spacer
accccgggcgatctgccgacccccgagcagaa	Protospacer
 ******.*****.***********..*..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage