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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034182 Bordetella pertussis strain BPD1 chromosome, complete genome 4 crisprs DEDDh,cas3,DinG,csa3 0 0 25 0

Results visualization

1. CP034182
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034182_1 396362-396455 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034182_2 577814-577898 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034182_3 922067-922161 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034182_4 3335430-3335539 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 90689 : 151200 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_2 353415 : 416102 54 Lake_Baikal_phage(14.29%) transposase NA
DBSCAN-SWA_3 497153 : 551348 54 Paramecium_bursaria_Chlorella_virus(14.29%) protease,transposase NA
DBSCAN-SWA_4 561964 : 677948 110 uncultured_Caudovirales_phage(18.52%) tail,tRNA,terminase,transposase NA
DBSCAN-SWA_5 682948 : 747049 52 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_6 811507 : 879483 58 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_7 902661 : 972949 55 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_8 985167 : 1042534 46 uncultured_Mediterranean_phage(37.5%) tRNA,holin,transposase NA
DBSCAN-SWA_9 1222760 : 1291248 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_10 1345976 : 1400783 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_11 2142127 : 2197363 50 Lake_Baikal_phage(25.0%) protease,transposase NA
DBSCAN-SWA_12 2206725 : 2267625 56 uncultured_Mediterranean_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_13 2348215 : 2414539 58 Ectocarpus_siliculosus_virus(10.0%) transposase NA
DBSCAN-SWA_14 2442584 : 2504885 55 Salmonella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_15 2591002 : 2631671 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_16 2693244 : 2829961 102 Agrobacterium_phage(14.29%) protease,transposase NA
DBSCAN-SWA_17 2860347 : 2904038 42 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_18 2927950 : 2996647 53 Staphylococcus_phage(28.57%) tRNA,protease,transposase NA
DBSCAN-SWA_19 3089505 : 3162493 59 Xanthomonas_phage(14.29%) tRNA,holin,transposase NA
DBSCAN-SWA_20 3180916 : 3233275 42 Erwinia_phage(25.0%) integrase,protease,transposase attL 3218941:3218959|attR 3238829:3238847
DBSCAN-SWA_21 3285032 : 3338773 49 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_22 3344928 : 3404228 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_23 3419166 : 3477239 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_24 3669190 : 3744583 57 Staphylococcus_phage(15.38%) transposase NA
DBSCAN-SWA_25 4005971 : 4076007 60 Natrialba_phage(12.5%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage