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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034193 Lactobacillus fermentum strain YL-11 chromosome, complete genome 5 crisprs cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3 0 24 8 0

Results visualization

1. CP034193
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034193_1 400196-400293 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034193_2 818708-820196 TypeII NA
22 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034193_3 838305-838393 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034193_4 1042415-1043159 TypeIII NA
10 spacers
cas1,cas2,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034193_5 1218238-1219243 TypeI-E NA
16 spacers
DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP034193_2 2.1|818744|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 818744-818773 30 MN830253 Lactobacillus phage JNU_P5, complete genome 16082-16111 0 1.0
CP034193_5 5.11|1218877|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1218877-1218909 33 GU323708 Lactobacillus phage phiPYB5, complete genome 7206-7238 0 1.0
CP034193_2 2.1|818744|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 818744-818773 30 MN830252 Lactobacillus phage JNU_P1, complete genome 16054-16083 1 0.967
CP034193_4 4.11|1042601|24|CP034193|PILER-CR 1042601-1042624 24 NZ_CP030090 Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence 50012-50035 1 0.958
CP034193_5 5.10|1218816|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1218816-1218848 33 MN830253 Lactobacillus phage JNU_P5, complete genome 26737-26769 1 0.97
CP034193_5 5.14|1219060|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1219060-1219092 33 HQ141410 Lactobacillus phage LF1, complete genome 34465-34497 1 0.97
CP034193_2 2.17|819800|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819800-819829 30 GU323708 Lactobacillus phage phiPYB5, complete genome 31526-31555 2 0.933
CP034193_5 5.11|1218877|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1218877-1218909 33 MN830253 Lactobacillus phage JNU_P5, complete genome 54467-54499 2 0.939
CP034193_4 4.3|1042592|33|CP034193|CRISPRCasFinder,CRT 1042592-1042624 33 NZ_CP030090 Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence 50003-50035 4 0.879
CP034193_1 1.1|400225|40|CP034193|CRISPRCasFinder 400225-400264 40 MK448665 Streptococcus phage Javan1, complete genome 18331-18370 6 0.85
CP034193_2 2.2|818810|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 818810-818839 30 MN304819 Phage 33_17, complete genome 30451-30480 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NC_014475 Enterococcus faecalis plasmid pWZ1668, complete sequence 7304-7333 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP013995 Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence 81000-81029 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP013995 Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence 70358-70387 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP014450 Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence 29567-29596 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP018073 Enterococcus faecium strain VRE001 plasmid unnamed3, complete sequence 3505-3534 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP018073 Enterococcus faecium strain VRE001 plasmid unnamed3, complete sequence 161062-161091 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP027518 Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence 160561-160590 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP027518 Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence 149917-149946 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP027502 Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence 55965-55994 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135298 Enterococcus faecium isolate E7429 plasmid 2 165285-165314 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 MT074686 Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence 54779-54808 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135279 Enterococcus faecium isolate E6975 plasmid 2 45350-45379 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135279 Enterococcus faecium isolate E6975 plasmid 2 101525-101554 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135279 Enterococcus faecium isolate E6975 plasmid 2 34707-34736 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 CP033377 Enterococcus faecium strain Gr17 plasmid pGR17, complete sequence 9645-9674 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP041256 Enterococcus faecium strain 515 plasmid p26, complete sequence 11178-11207 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP046110 Enterococcus faecalis strain 133170041-3 plasmid pTEF2, complete sequence 46420-46449 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135489 Enterococcus faecium isolate E8414 plasmid 2 175075-175104 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135415 Enterococcus faecium isolate E8328 plasmid 2 185211-185240 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135395 Enterococcus faecium isolate E8290 plasmid 2 185211-185240 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP046125 Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence 24128-24157 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135345 Enterococcus faecium isolate E8202 plasmid 2 132711-132740 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135409 Enterococcus faecium isolate E8284 plasmid 2 185211-185240 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LN999988 Enterococcus faecium isolate EFE11651 plasmid II, complete sequence 141118-141147 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP025687 Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence 61884-61913 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP040704 Enterococcus faecium strain HOU503 plasmid p1, complete sequence 13319-13348 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP019993 Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence 47184-47213 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035655 Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence 79437-79466 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035655 Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence 68793-68822 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035661 Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence 73070-73099 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035661 Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence 62426-62455 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035667 Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence 73072-73101 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035667 Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence 62428-62457 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035649 Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence 79440-79469 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP035649 Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence 68796-68825 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NC_019284 Enterococcus faecalis plasmid pWZ7140, complete sequence 7295-7324 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 30888-30917 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 157434-157463 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NC_019213 Enterococcus faecalis plasmid pWZ909, complete sequence 7304-7333 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP012461 Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence 55998-56027 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_MG674581 Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence 112214-112243 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP018832 Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence 180099-180128 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP027498 Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence 174063-174092 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP025756 Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence 62907-62936 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_LR135429 Enterococcus faecium isolate E8927 plasmid 2 58957-58986 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NC_021987 Enterococcus faecium Aus0085 plasmid p1, complete sequence 76094-76123 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP050649 Enterococcus faecium strain BIOPOP-3 ALE plasmid pBIOPOP-3_ALE 7752-7781 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP050651 Enterococcus faecium strain BIOPOP-3 WT plasmid pBIOPOP-3_WT 18776-18805 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP044265 Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence 109587-109616 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP011829 Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence 68152-68181 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP033042 Enterococcus faecium strain Enterococcus faecium JE1 plasmid unnamed, complete sequence 74963-74992 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_AP022342 Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence 222501-222530 6 0.8
CP034193_2 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819206-819235 30 NZ_CP018827 Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence 180099-180128 6 0.8
CP034193_2 2.11|819404|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819404-819433 30 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1525960-1525989 6 0.8
CP034193_2 2.16|819734|30|CP034193|CRISPRCasFinder,CRT 819734-819763 30 NC_013085 Synechococcus phage S-RSM4, complete genome 136540-136569 6 0.8
CP034193_2 2.16|819734|30|CP034193|CRISPRCasFinder,CRT 819734-819763 30 FM207411 Synechococcus phage S-RSM4 complete genome 136540-136569 6 0.8
CP034193_2 2.1|818744|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 818744-818773 30 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 91516-91545 7 0.767
CP034193_2 2.7|819140|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819140-819169 30 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 148919-148948 7 0.767
CP034193_2 2.17|819800|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819800-819829 30 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 683022-683051 7 0.767
CP034193_2 2.17|819800|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819800-819829 30 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 624811-624840 7 0.767
CP034193_2 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819999-820028 30 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 1468269-1468298 7 0.767
CP034193_2 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819999-820028 30 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 1284481-1284510 7 0.767
CP034193_2 2.21|820065|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 820065-820094 30 MK372342 Enterobacteria phage vB_EcoS_IME542, complete genome 21875-21904 7 0.767
CP034193_3 3.1|838333|33|CP034193|CRISPRCasFinder 838333-838365 33 MH791407 UNVERIFIED: Aeromonas phage AsFcp_4, partial genome 60055-60087 7 0.788
CP034193_3 3.1|838333|33|CP034193|CRISPRCasFinder 838333-838365 33 MN871440 UNVERIFIED: Aeromonas phage AsFcp_1, complete genome 103658-103690 7 0.788
CP034193_2 2.9|819272|30|CP034193|PILER-CR,CRISPRCasFinder,CRT 819272-819301 30 NZ_LT996085 Lactobacillus acidipiscis strain ACA-DC 1533 plasmid pLAC2, complete sequence 50918-50947 8 0.733
CP034193_2 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819999-820028 30 NC_008739 Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU02, complete sequence 103669-103698 8 0.733
CP034193_2 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 819999-820028 30 NZ_CP034143 Marinobacter sp. NP-4(2019) plasmid unnamed1, complete sequence 33103-33132 8 0.733
CP034193_2 2.21|820065|30|CP034193|CRISPRCasFinder,CRT,PILER-CR 820065-820094 30 MN840485 Escherichia phage 2725-N35, complete genome 27511-27540 8 0.733
CP034193_4 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT 1042806-1042839 34 MK504442 Lactobacillus phage 3-SAC12, complete genome 37206-37239 8 0.765
CP034193_4 4.14|1043089|34|CP034193|PILER-CR 1043089-1043122 34 MK448434 Streptococcus satellite phage Javan329, complete genome 1149-1182 8 0.765
CP034193_5 5.6|1218572|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1218572-1218604 33 NC_048171 Synechococcus phage S-B28, complete genome 2365-2397 8 0.758
CP034193_1 1.1|400225|40|CP034193|CRISPRCasFinder 400225-400264 40 KY653116 Staphylococcus phage IME1318_01, complete genome 16918-16957 9 0.775
CP034193_4 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR 1042522-1042555 34 NZ_KF418775 Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence 87451-87484 9 0.735
CP034193_4 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR 1042522-1042555 34 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 235737-235770 9 0.735
CP034193_4 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT 1042806-1042839 34 NZ_CP011133 Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence 104572-104605 9 0.735
CP034193_4 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT 1042806-1042839 34 NZ_CP032915 Enterobacter roggenkampii strain ECY546 plasmid pY546, complete sequence 92787-92820 9 0.735
CP034193_4 4.10|1043089|35|CP034193|CRISPRCasFinder,CRT 1043089-1043123 35 MK448434 Streptococcus satellite phage Javan329, complete genome 1148-1182 9 0.743
CP034193_4 4.14|1043089|34|CP034193|PILER-CR 1043089-1043122 34 KY203335 Pasteurella phage PMP-GADVASU-IND, complete genome 1756-1789 9 0.735
CP034193_1 1.1|400225|40|CP034193|CRISPRCasFinder 400225-400264 40 MK448369 Streptococcus satellite phage Javan219, complete genome 7721-7760 10 0.75
CP034193_3 3.1|838333|33|CP034193|CRISPRCasFinder 838333-838365 33 MF417875 Uncultured Caudovirales phage clone 10S_11, partial genome 43569-43601 10 0.697
CP034193_4 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR 1042522-1042555 34 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 1489336-1489369 10 0.706
CP034193_4 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR 1042522-1042555 34 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 2137966-2137999 10 0.706
CP034193_4 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR 1042522-1042555 34 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 1191611-1191644 10 0.706
CP034193_4 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT 1042806-1042839 34 NZ_CP009417 Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence 245510-245543 10 0.706
CP034193_5 5.3|1218388|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1218388-1218420 33 MK448572 Streptococcus satellite phage Javan61, complete genome 3454-3486 10 0.697
CP034193_5 5.4|1218449|33|CP034193|PILER-CR,CRISPRCasFinder,CRT 1218449-1218481 33 NZ_CP023000 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence 430282-430314 10 0.697

1. spacer 2.1|818744|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 0, identity: 1.0

actctcttgggtttacctgggaggtaattg	CRISPR spacer
actctcttgggtttacctgggaggtaattg	Protospacer
******************************

2. spacer 5.11|1218877|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 0, identity: 1.0

tccgcatttcttccgcactttttccggttttaa	CRISPR spacer
tccgcatttcttccgcactttttccggttttaa	Protospacer
*********************************

3. spacer 2.1|818744|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 1, identity: 0.967

actctcttgggtttacctgggaggtaattg	CRISPR spacer
actctcttggatttacctgggaggtaattg	Protospacer
**********.*******************

4. spacer 4.11|1042601|24|CP034193|PILER-CR matches to NZ_CP030090 (Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.958

gaagaatttttagataaacggagg	CRISPR spacer
aaagaatttttagataaacggagg	Protospacer
.***********************

5. spacer 5.10|1218816|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 1, identity: 0.97

tgcttagcgatctttacgaagaaacgagcttcg	CRISPR spacer
tgcttagcgatcttaacgaagaaacgagcttcg	Protospacer
************** ******************

6. spacer 5.14|1219060|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to HQ141410 (Lactobacillus phage LF1, complete genome) position: , mismatch: 1, identity: 0.97

cggccttcttgatcgctttggtggtcaacaacg	CRISPR spacer
cggtcttcttgatcgctttggtggtcaacaacg	Protospacer
***.*****************************

7. spacer 2.17|819800|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.933

tggccaacattaagcgggcgatgacagagg	CRISPR spacer
tagccaacattaagcgggcgatgacagaag	Protospacer
*.**************************.*

8. spacer 5.11|1218877|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 2, identity: 0.939

tccgcatttcttccgcactttttccggttttaa	CRISPR spacer
tccgcatttcttccggactttttccggttttca	Protospacer
*************** *************** *

9. spacer 4.3|1042592|33|CP034193|CRISPRCasFinder,CRT matches to NZ_CP030090 (Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.879

gaagaatttttagataaacggaggaaatagaaa	CRISPR spacer
aaagaatttttagataaacggaggaaattaaga	Protospacer
.*************************** .*.*

10. spacer 1.1|400225|40|CP034193|CRISPRCasFinder matches to MK448665 (Streptococcus phage Javan1, complete genome) position: , mismatch: 6, identity: 0.85

tataggattttattcccacattttccaacatttttgctga	CRISPR spacer
tataggattttattccgacattttccaacaattcggacga	Protospacer
**************** ************* **. * .**

11. spacer 2.2|818810|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MN304819 (Phage 33_17, complete genome) position: , mismatch: 6, identity: 0.8

tttcttttttaatcatcgattggg-tgtttg	CRISPR spacer
cttcttttttattcatggattgggataatt-	Protospacer
.********** **** ******* *. ** 

12. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_014475 (Enterococcus faecalis plasmid pWZ1668, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

13. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

14. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

15. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014450 (Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

16. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018073 (Enterococcus faecium strain VRE001 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

17. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018073 (Enterococcus faecium strain VRE001 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

18. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

19. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

20. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

21. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135298 (Enterococcus faecium isolate E7429 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

22. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

23. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

24. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

25. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

26. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to CP033377 (Enterococcus faecium strain Gr17 plasmid pGR17, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

27. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041256 (Enterococcus faecium strain 515 plasmid p26, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

28. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046110 (Enterococcus faecalis strain 133170041-3 plasmid pTEF2, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

29. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

30. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

31. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

32. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046125 (Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

33. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135345 (Enterococcus faecium isolate E8202 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

34. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

35. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN999988 (Enterococcus faecium isolate EFE11651 plasmid II, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

36. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025687 (Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

37. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040704 (Enterococcus faecium strain HOU503 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

38. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

39. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

40. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

41. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

42. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

43. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

44. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

45. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

46. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

47. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_019284 (Enterococcus faecalis plasmid pWZ7140, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

48. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

49. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

50. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_019213 (Enterococcus faecalis plasmid pWZ909, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

51. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

52. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG674581 (Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

53. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

54. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

55. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

56. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135429 (Enterococcus faecium isolate E8927 plasmid 2) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

57. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_021987 (Enterococcus faecium Aus0085 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

58. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050649 (Enterococcus faecium strain BIOPOP-3 ALE plasmid pBIOPOP-3_ALE) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

59. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050651 (Enterococcus faecium strain BIOPOP-3 WT plasmid pBIOPOP-3_WT) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

60. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044265 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

61. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011829 (Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

62. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033042 (Enterococcus faecium strain Enterococcus faecium JE1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

63. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

64. spacer 2.8|819206|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 6, identity: 0.8

catttctagcgacgtatacgttgattcagc	CRISPR spacer
tactttcagcgacttataagttgattcagc	Protospacer
.*.**..****** **** ***********

65. spacer 2.11|819404|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tcaatggcctatcagacccgtt-cgagctat	CRISPR spacer
tcaatggacaatcagacccgttccgagacg-	Protospacer
******* * ************ **** .. 

66. spacer 2.16|819734|30|CP034193|CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 6, identity: 0.8

atatgattccacgaattccaaaaagattat	CRISPR spacer
agacgattccatgaattccaaaaaaattcc	Protospacer
* *.*******.************.*** .

67. spacer 2.16|819734|30|CP034193|CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 6, identity: 0.8

atatgattccacgaattccaaaaagattat	CRISPR spacer
agacgattccatgaattccaaaaaaattcc	Protospacer
* *.*******.************.*** .

68. spacer 2.1|818744|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 7, identity: 0.767

actctcttgggtttacctgggag---gtaattg	CRISPR spacer
tgtctcttgggttttcctgggagtgtgaaa---	Protospacer
  ************ ********   * **   

69. spacer 2.7|819140|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tttgacaacgtccagctcttccaattcacg	CRISPR spacer
attcggtacgtcaagctcttcaaattcacg	Protospacer
 ** .  ***** ******** ********

70. spacer 2.17|819800|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.767

tggccaacattaagcgggcgatgacagagg	CRISPR spacer
tggccgacatgaagcgggcgatgtcggcct	Protospacer
*****.**** ************ *.*   

71. spacer 2.17|819800|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.767

tggccaacattaagcgggcgatgacagagg	CRISPR spacer
tggccgacatgaagcgggcgatgtcggcct	Protospacer
*****.**** ************ *.*   

72. spacer 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.767

cgtggagaacctggttaaaaagcacggtgc	CRISPR spacer
tgaagagaaccagggtaaaaagcacggttt	Protospacer
.* .******* ** ************* .

73. spacer 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 7, identity: 0.767

cgtggagaacctggttaaaaagcacggtgc	CRISPR spacer
tgaagagaaccagggtaaaaagcacggttt	Protospacer
.* .******* ** ************* .

74. spacer 2.21|820065|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to MK372342 (Enterobacteria phage vB_EcoS_IME542, complete genome) position: , mismatch: 7, identity: 0.767

cgctggtcacgctgaacgggattaagaacg	CRISPR spacer
ctgcgtttacgatgaacgggattaagaact	Protospacer
*  .* *.*** ***************** 

75. spacer 3.1|838333|33|CP034193|CRISPRCasFinder matches to MH791407 (UNVERIFIED: Aeromonas phage AsFcp_4, partial genome) position: , mismatch: 7, identity: 0.788

taagcgt-gcaaaaggattgtcagaaaaagacaa	CRISPR spacer
-agctgtggtaaaagaactgtcagaaaaagacaa	Protospacer
 *. .** *.*****.*.****************

76. spacer 3.1|838333|33|CP034193|CRISPRCasFinder matches to MN871440 (UNVERIFIED: Aeromonas phage AsFcp_1, complete genome) position: , mismatch: 7, identity: 0.788

taagcgt-gcaaaaggattgtcagaaaaagacaa	CRISPR spacer
-agctgtggtaaaagaactgtcagaaaaagacaa	Protospacer
 *. .** *.*****.*.****************

77. spacer 2.9|819272|30|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT996085 (Lactobacillus acidipiscis strain ACA-DC 1533 plasmid pLAC2, complete sequence) position: , mismatch: 8, identity: 0.733

gatcagtccctagcttgttttgcaagccaa	CRISPR spacer
aaagaatccctagcttgttttgtaagcgct	Protospacer
.*  *.****************.****   

78. spacer 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NC_008739 (Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU02, complete sequence) position: , mismatch: 8, identity: 0.733

cgtggagaacctggttaaaaagcacggtgc	CRISPR spacer
ccgcaagaacctggttaaaaagctccgttg	Protospacer
*   .****************** * **  

79. spacer 2.20|819999|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034143 (Marinobacter sp. NP-4(2019) plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgtggagaacctggttaaaaagcacggtgc	CRISPR spacer
ccgcaagaacctggttaaaaagctccgttg	Protospacer
*   .****************** * **  

80. spacer 2.21|820065|30|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to MN840485 (Escherichia phage 2725-N35, complete genome) position: , mismatch: 8, identity: 0.733

cgctggtcacgctgaacgggattaagaacg	CRISPR spacer
ctacatttacgatgaacgggattaagaacc	Protospacer
*  .. *.*** ***************** 

81. spacer 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT matches to MK504442 (Lactobacillus phage 3-SAC12, complete genome) position: , mismatch: 8, identity: 0.765

agaaaaggaaataatcatcatgaaaactaaggaa	CRISPR spacer
aggaaaggaagtaatcatcatgaatgaaattgaa	Protospacer
**.*******.************* .  *  ***

82. spacer 4.14|1043089|34|CP034193|PILER-CR matches to MK448434 (Streptococcus satellite phage Javan329, complete genome) position: , mismatch: 8, identity: 0.765

gaaaaggagaaaaccatgaagactaaaatcgaaa	CRISPR spacer
gaaaaggagtaaaccatgaagattacacaacaca	Protospacer
********* ************.** *    * *

83. spacer 5.6|1218572|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NC_048171 (Synechococcus phage S-B28, complete genome) position: , mismatch: 8, identity: 0.758

ggggatggataaattgatctctgctttttatcg	CRISPR spacer
cggtgaggataaattgatctctgaattttaccc	Protospacer
 ** . *****************  *****.* 

84. spacer 1.1|400225|40|CP034193|CRISPRCasFinder matches to KY653116 (Staphylococcus phage IME1318_01, complete genome) position: , mismatch: 9, identity: 0.775

tataggattttattcccacattttccaacatttttgctga--	CRISPR spacer
ttgctgattttattccgacattttccaacaattt--atgact	Protospacer
*    *********** ************* ***   ***  

85. spacer 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF418775 (Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence) position: , mismatch: 9, identity: 0.735

ccacaa----ccgggtcgaggcggccaccacggcgccc	CRISPR spacer
----agcgctcggggtcgatgcggccaccgcggcgctc	Protospacer
    *.    * ******* *********.******.*

86. spacer 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.735

ccacaaccgggtcgaggcggccaccacggcgccc	CRISPR spacer
acccgcccaggtcgaggcggccagcacggcaagc	Protospacer
 * *. **.************** ******.  *

87. spacer 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT matches to NZ_CP011133 (Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaggaaataatcatcat-----gaaaactaaggaa	CRISPR spacer
agaagaggaaataatcatgatgaaccgaatactg-----	Protospacer
****.************* **     *** ***.     

88. spacer 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT matches to NZ_CP032915 (Enterobacter roggenkampii strain ECY546 plasmid pY546, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaggaaataatcatcat-----gaaaactaaggaa	CRISPR spacer
agaagaggaaataatcatgatgaaccgaatactg-----	Protospacer
****.************* **     *** ***.     

89. spacer 4.10|1043089|35|CP034193|CRISPRCasFinder,CRT matches to MK448434 (Streptococcus satellite phage Javan329, complete genome) position: , mismatch: 9, identity: 0.743

gaaaaggagaaaaccatgaagactaaaatcgaaaa	CRISPR spacer
gaaaaggagtaaaccatgaagattacacaacacac	Protospacer
********* ************.** *    * * 

90. spacer 4.14|1043089|34|CP034193|PILER-CR matches to KY203335 (Pasteurella phage PMP-GADVASU-IND, complete genome) position: , mismatch: 9, identity: 0.735

gaaaaggagaaaaccatgaagactaaaatcgaaa---	CRISPR spacer
caaaaggagaaaaccatgcagtct---accaagactt	Protospacer
 ***************** ** **   *.*.*.*   

91. spacer 1.1|400225|40|CP034193|CRISPRCasFinder matches to MK448369 (Streptococcus satellite phage Javan219, complete genome) position: , mismatch: 10, identity: 0.75

tataggattttattcccacattttccaacatttttgctga	CRISPR spacer
tctcgtatttcattccaacattttccaacattttattaaa	Protospacer
* * * ****.***** *****************  . .*

92. spacer 3.1|838333|33|CP034193|CRISPRCasFinder matches to MF417875 (Uncultured Caudovirales phage clone 10S_11, partial genome) position: , mismatch: 10, identity: 0.697

taagcgtgcaaaaggattgtcagaaaaagacaa	CRISPR spacer
aagaaaagcaaaaggattgtcacaaaaaaactt	Protospacer
 *.. . *************** *****.**  

93. spacer 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.706

----ccacaaccgggtcgaggcggccaccacggcgccc	CRISPR spacer
tgtgtca----ttggtcgaggcggccacgtcggcgcca	Protospacer
    .**    . ***************  ******* 

94. spacer 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

----ccacaaccgggtcgaggcggccaccacggcgccc	CRISPR spacer
tgtgtca----ttggtcgaggcggccacgtcggcgcca	Protospacer
    .**    . ***************  ******* 

95. spacer 4.2|1042522|34|CP034193|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 10, identity: 0.706

ccacaaccgggtcgaggcggccaccacggcgccc	CRISPR spacer
cgccaaccgggtcgaggcggaaaccaccgactat	Protospacer
*  *****************  ***** *  . .

96. spacer 4.6|1042806|34|CP034193|CRISPRCasFinder,CRT matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaggaaataatcatcatgaaaactaaggaa	CRISPR spacer
caaaaaggagataatcaacatgaaaacatcaaca	Protospacer
 .*******.******* *********   .. *

97. spacer 5.3|1218388|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to MK448572 (Streptococcus satellite phage Javan61, complete genome) position: , mismatch: 10, identity: 0.697

atgctgcgtacattagattttctattaattttg	CRISPR spacer
ggaatcattactttagattttctatttattttt	Protospacer
. . *   *** ************** ***** 

98. spacer 5.4|1218449|33|CP034193|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 10, identity: 0.697

tcatgccagttaccgttgcggtagttgactctg	CRISPR spacer
ccgggccagttaccgttgccgtaggtgatcaac	Protospacer
.*. *************** **** ***..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 315022 : 323494 10 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 397600 : 454347 52 Streptococcus_phage(21.05%) protease,transposase,tRNA,integrase attL 399368:399383|attR 409259:409274
DBSCAN-SWA_3 467956 : 519209 52 Lactobacillus_phage(21.43%) head,transposase,tRNA NA
DBSCAN-SWA_4 634062 : 697720 55 Planktothrix_phage(10.53%) protease,tRNA,transposase,holin NA
DBSCAN-SWA_5 703728 : 776687 53 Paenibacillus_phage(13.33%) protease,transposase,tRNA NA
DBSCAN-SWA_6 898928 : 907196 8 Staphylococcus_phage(28.57%) tRNA NA
DBSCAN-SWA_7 1566344 : 1616318 46 Lactobacillus_phage(25.0%) protease,transposase NA
DBSCAN-SWA_8 1764018 : 1808178 40 Streptococcus_phage(27.27%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage