CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034110	Avibacterium paragallinarum strain FARPER-174 chromosome, complete genome	2 crisprs	PD-DExK,cas3,WYL,DEDDh,cas2,DinG,csa3	0	3	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034110_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034110_2

1230485-1230611

Orphan

Consensus_repeat	Method
TTTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP034110_2

>merge|CP034110|2|1230485-1230611|CRISPRCasFinder
TTTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCATGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCAAGAGATAAGATATTTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCC

>CP034110|2|1|1230485-1230611|CRISPRCasFinder
TTTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCC	AACCATGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCAAGAGATAAGATA
TTTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP034110.1\|AZI14217.1\|1240362_1241787_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
CP034110.1\|AZI14213.1\|1233047_1234775_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
CP034110.1\|AZI14216.1\|1238377_1240276_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
CP034110.1\|AZI14210.1\|1230791_1231340_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
CP034110.1\|AZI14209.1\|1229288_1230371_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
CP034110.1\|AZI14202.1\|1219930_1221283_+\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|235403
CP034110.1\|AZI14204.1\|1221910_1224763_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP034110.1\|AZI14206.1\|1225516_1225825_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP034110.1\|AZI14207.1\|1225826_1226186_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|227028
CP034110.1\|AZI14200.1\|1218823_1219246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234983
CP034110.1\|AZI14201.1\|1219242_1219929_+\|CidB/LrgB-family-autolysis-modulator	unknown	unknown	gnl\|CDD\|273202
CP034110.1\|AZI14203.1\|1221429_1221909_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
CP034110.1\|AZI14212.1\|1232692_1232950_+\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|182777
CP034110.1\|AZI14215.1\|1235662_1238326_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
CP034110.1\|AZI14219.1\|1243937_1245311_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
CP034110.1\|AZI14218.1\|1242083_1243853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377133
CP034110.1\|AZI14214.1\|1234837_1235338_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
CP034110.1\|AZI14211.1\|1231411_1232470_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
CP034110.1\|AZI14205.1\|1224844_1225465_+\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP034110.1\|AZI14208.1\|1227795_1229085_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461

Protein	Function_ID	Function_description	E-value
CP034110.1\|AZI14217.1\|1240362_1241787_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
CP034110.1\|AZI14213.1\|1233047_1234775_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
CP034110.1\|AZI14216.1\|1238377_1240276_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
CP034110.1\|AZI14210.1\|1230791_1231340_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	9.13666e-133
CP034110.1\|AZI14209.1\|1229288_1230371_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
CP034110.1\|AZI14202.1\|1219930_1221283_+\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	gnl\|CDD\|235403	PRK05318, PRK05318, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
CP034110.1\|AZI14204.1\|1221910_1224763_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP034110.1\|AZI14206.1\|1225516_1225825_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.93784e-09
CP034110.1\|AZI14207.1\|1225826_1226186_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	1.22083e-45
CP034110.1\|AZI14200.1\|1218823_1219246_+\|hypothetical-protein	gnl\|CDD\|234983	PRK01821, PRK01821, hypothetical protein; Provisional.	4.44769e-45
CP034110.1\|AZI14201.1\|1219242_1219929_+\|CidB/LrgB-family-autolysis-modulator	gnl\|CDD\|273202	TIGR00659, Uncharacterized_protein_HI_1298, TIGR00659 family protein. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup. [Hypothetical proteins, Conserved].	4.20917e-81
CP034110.1\|AZI14203.1\|1221429_1221909_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.08297e-108
CP034110.1\|AZI14212.1\|1232692_1232950_+\|HPr-family-phosphocarrier-protein	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	3.41653e-40
CP034110.1\|AZI14215.1\|1235662_1238326_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
CP034110.1\|AZI14219.1\|1243937_1245311_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.47648e-91
CP034110.1\|AZI14218.1\|1242083_1243853_+\|hypothetical-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	5.83408e-09
CP034110.1\|AZI14214.1\|1234837_1235338_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	9.33372e-100
CP034110.1\|AZI14211.1\|1231411_1232470_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
CP034110.1\|AZI14205.1\|1224844_1225465_+\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.5016e-96
CP034110.1\|AZI14208.1\|1227795_1229085_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0

>CP034110.1|AZI14209.1|1229288_1230371_+|peptide-chain-release-factor-1
MKPSIISKLDSLNERHEELEALLGDASVISDQEKFRAYSKEYAQLEDVVKCFARWKQLNSNMEEAQLLLDDPSMREMAQEEVEECKAEIEQVEAQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKISGENVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESELPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQEERSQHKNKAKAMSVLASRIVQAEQEKLAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKMDELIQPIITEYQADQLAALSDQG
>CP034110.1|AZI14208.1|1227795_1229085_+|serine--tRNA-ligase
MIDPNLLRNNLAEVAEKLKIRRGFELDEARISELEDQRKALQVKTETLQAERNTRSKAIGAAKARGEDIAPLLAEVDNMGIELSMAKSQLDDVQAELQEIALSIPNIPADEVPLGNDENDNVEISRWGEPRTFDFEVKDHVTLGEHLQGLDFAAGVKLSGARFVVMKGQIAKMHRALAQFMLDLHTEQHGYSETYVPYLVNHATLYGTGQLPKFGEDLFHTKPLEGEQPYALIPTAEVPVTNLVRDEILEQAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVEPEKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSAKTYDLEVWVPAQNTYREISSCSNMWDFQARRMQARYRVKGEKKPRLVHTLNGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVIGK
>CP034110.1|AZI14207.1|1225826_1226186_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MVVKKKWEVIATARFKIWLKEQDEATRISVFNALNNLRFYGPQLSRPYVDTIKGSQYPNMKELRIQHKSKPLRAFFAFDPLRQAIVLCAGNKSNNKQFYKQMITIADAEFTDYLATLEK
>CP034110.1|AZI14206.1|1225516_1225825_-|XRE-family-transcriptional-regulator
MTQYTTLDELIAQESPETQQCIKEMSEELILETGLAMIREQLALSQKELAQAIGVSQSAIAQIEQRGNDVKLSTLKRYIEKMGGELSLTVKMPTGYSQIFPL
>CP034110.1|AZI14205.1|1224844_1225465_+|outer-membrane-lipoprotein-carrier-protein-LolA
MKKMAVKMTALLCLGLSPLAWADAVSELQARLNKVEALSADYVQKVSDPKGKEIQQGKGKIQIKRPNLFRMDNQAPQESQVISDGKTLWFYDPFVQQVTANWVADAVNNTPFVLLTSNDTQYWKQYNVEQNADTFTLKPKSAKSQIKQFDIRIDGEGVLKNFSTTEKDGQTNLYLLRNITNQPLADSLFKFSVPKGVELDDQRKKK
>CP034110.1|AZI14204.1|1221910_1224763_+|DNA-translocase-FtsK
MIKRITTNLTPKQYMGELCLGIISLFGLYLIVAWSSYSPFDNTWAVSSSQPETINKAGALGAWLIGLFFTLFGHIGNVIPFILCFVPIYLFKTKKFTQLTAIKAAIRTLGGVILFAGLTTLATLLLSNTSAYLAGGVLGGSLVVSLYPILGKAGLILSALLFTVAGFVLCSGKVLIQLFVRFYYWLTMNEHKTPTMATPEEPQEQSEPVPLEEIIIHKVEPRPEPQQAENTEQSEEAESPKSNQPFIQISGLKELTQPVASDNAPSSAENTENNATLFDPRKMELFSRYDVGQDDSLPNVSLPQSTSAVAPVVQVELVSPQISPPITPQKPELHAISQPANTQSAVSFSEEFLPYEAPNEPELKVSIPDYSVEAYQVTEDFAEPSDEMDDLARQFAAQEQQRLAEMQQRAKEINEEDTLEHILAEQEPASNQPSYKPYGDSLIHPALQKQVSIKEKPTTPLPSLDLLEKRQVEVQEITREEILDTSQRIEQQLRNFNVKATVKDVLVGPVVTRYELELQPGVKASKVTSIDTDLARALMFRSIRVAEVIPGKPYIGIETPNLHRQMVPLRDVLDSPEFRESKSLLSMALGKDISGNPIVVDLAKMPHLLVAGSTGSGKSVGVNTMILSLLFRVKPEEVKFIMIDPKVVELSIYDGIPHLLTEVVTDMKKAANALRWCVDEMERRYQLLSALRVRNIEGYNEKIEEYNAMGMPIPNPIWRPGDTMDAMPPALEKLSYIVVIVDEFADLMMVAGKQIEELIARLAQKARAIGIHLILATQRPSVDVITGLIKANIPSRIAFTVASKIDSRTILDQGGAETLLGRGDMLYSGQGSSDLIRVHGAFMSDDEVARVADDWRARGKPNYIEGILDSAEEEDSDTPRTGDDGELDDLFDEVMNFVIETGTTSASSIQRKFRVGFNRAARIMDQLEEQGIVSPLQNGKREILARRSDY
>CP034110.1|AZI14203.1|1221429_1221909_+|leucine-responsive-transcriptional-regulator-Lrp
MEKKLPKALDAIDIKILNELQRNGKISNIDLSKKVGLSPTPCLERVKRLEKQGVIMGYRALLNPELLDSPLLVIVEITLVRGKPDVFEEFNDAVQQLDEIQECHLVSGDFDYLLKTRVADMAAYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNFLQLK
>CP034110.1|AZI14202.1|1219930_1221283_+|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein
MKNSINPLWLERFINDNPREKDHRPPFRRDRGRILHSAAFRCLQAKTQIHAVGENDFYRTRLTHSLEVAQIGSSLVSQLKFSEAFTHLAQQLNIENAQLQKQLKPLLPSNDLIESLCFAHDIGHPPFGHGGEVALNYMMQSHGGFEGNAQTFRVLTKLEPYTLNAGMNLTRRTLLGVVKYPAILDEVSPQYAELAMPNHSNPFSIKLTDWIPGKGLFREDKAMFDWLLAPLSEADRHLFQTLSSLRETSQQTLKTRYKSLDCSIMELADDIAYGVHDLEDAIVVGVIHLQQWQEALAQLKNSSSPWIREHIDALSEKLFSAHHYERKNAIGALVNYFITNVRWKITADFTEPLLRYNAELPEDVLAVLKVFKDFVLKYVICDVTTQRIEYKGQRMLTEMFQIFESDPERLLPRNTANRWKMASAEQKKRIICDYIAGMSDAYAIKVYQQL
>CP034110.1|AZI14201.1|1219242_1219929_+|CidB/LrgB-family-autolysis-modulator
MIYAYTLLTIVVFALALQISKRLKSLVFNSFILTVAMLITIVLIFHLPYEDYYQGNAPLNHLLGVSVVALALPLYEQFRQIQAYWKTILFITALSSFFSMCVGAILALLLGAEPEIVATILPKSVTTPIAMEIADNLGGIPSVAAVAVLLAGLQGSMFGYVILKTIRIKHSQAIGLSVGAVSHVLGTVSCMETDPKAGNFSSISLVLCGILSSIFAPFVFKFIYLMVA
>CP034110.1|AZI14200.1|1218823_1219246_+|hypothetical-protein
MIQKIFQLLRSFIILFSMYFLGEQIAHFIPLGIPGSIWGLLLLFMCLMLQVIKVHWIFAGASLLMRYMAVLFVPVSVGIIQYSDLLARQAKVLLIPNIVATMLTLVLSGILADYLFSQGSFSGLRKKVLKKRAKASRGNQ
>CP034110.1|AZI14210.1|1230791_1231340_-|oligoribonuclease
MQLDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAIHQPDSLLAKMSDWCKKTHRENGLIERVKQSKLNERAAELQTLDFLKKWVPKGASPICGNSVAQDKRFLFKYMPDLAEYFHYRYLDVSTLKELASRWSPEILNNFSKKNTHLALDDIRESIAELAYYREHFIKAP
>CP034110.1|AZI14211.1|1231411_1232470_+|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MSKQKLTHNQQRRIKSNNVRALQRHKLKMKKEIEWQDEMLGPTQEGTVVTRYSVHSDVEDEQGQIYRCNLRRTLSNLVVGDKVIWRKGNEQLQGVSGVIEAIHPRKNEITRPDYYDGLKVIAANIDRIIIVSAVVPELSLNIIDRYLVVCENANIPAVILLNKVDLLSEEQRQQVETQLKIYQDIGYQTMMISAKTGKHMQDLTALLSSGTSIFVGQSGVGKSSLINAILPEVNAQVGEVSELSGLGKHTTTSSRLYHLPQGGDLIDSPGIRELGLWHLNANQITKGYREFQYFLGTCKFRDCKHLNDPGCALKEAVEKGKIHPIRFNNYHNLIESLSNIKGNRRFVIQDNG
>CP034110.1|AZI14212.1|1232692_1232950_+|HPr-family-phosphocarrier-protein
MYSKDVEITAPNGLHTRPAAQFVKEAKAFASDITVTSGGKSASAKSLFKLQTLGLTQGTVITISAEGEDEQKAVDHLVALIPTLE
>CP034110.1|AZI14213.1|1233047_1234775_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGIPASPGIVFGKALVLKEEKIVLDTQKIQDDQIEAEVERFYAGRNAAVEQLTAIKDRAYASLGEEKAAIFEGHLMILEDEELEEEIIDYLRSNKVNAGVAASTIIAQQVAMLSEIDDEYLKERAGDIQDIGNRLIKNILGMKIVDLGEINEEAILVAYDLTPSETAQLNLDKVLGFITDIGGRTSHTSIMARSLELPAIVGTNTVTQQVNTGDFLILDAVNNQVYINPTQEEIDRLRKLEQQLKEEKEELAKLKDLPALTLDGHRVDVVANIGTIRDIDGAERNGAEGVGLYRTEFLFMDRDQLPTEEEQFIAYKEVVEAMNGRLVVLRTMDIGGDKELPYLNLPKEMNPFLGWRAIRIALDRKEILHAQLRAVLRASAFGKLAVMFPMIISVEEIRALKAEIALLKEQLRNEGKAFDENIQIGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMTPSVLNLIKQVIDASHAEGKWTGMCGELAGDEKATLLLLGMGLDEFSMSAISVPRIKKLIRNVNYQDAKVLADAALEQPTAADIERLVTDFLVEKALN
>CP034110.1|AZI14214.1|1234837_1235338_+|PTS-glucose-transporter-subunit-IIA
MGFFDKLFGSKNSKTVEVEIYAPLSGEIVNIEDVPDVVFSEKIVGDGVAIRPTGNKLVAPVDGVVGKIFETNHAFSMESEDGVELFVHFGIDTVELKGEGFIRVADEGQKVKRGDTIIELDLEVLESKAKSVLTPVVISNMDEISHIEKKTGEVIAGESIILILKK
>CP034110.1|AZI14215.1|1235662_1238326_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSEMLTNDVDPIETNDWLLAIDSVIREEGVERAQFIIEQLMQHARANSVSLPTGVTTDYINTIPTSEEPNYPGNLDLERRIRGAIRWNAIMMVLRASKKDLELGGHMSSFQSSATIYEVCFNHFFKARTEKNGGDLVFFQGHISPGIYARAFLEGRLTEEQLDNFRQEVHGKGLSSYPHPKLMPEFWQFPTVSMGLGPLNAIYQARFLKYLHHRGLKDTADQTVYAFLGDGEMDEVESRGGLAFAAREKLDNLVFVINCNLQRLDGPVTGNGKIIQELEAQFNGCGWEVIKVIWGRRWDRLLQRDTSGKLLQLMMEVVDGDYQTFKSKDGAYVRKHFFGRYPETEALVAEMTDDEIWALNRGGHDPLKVFAAFNKAKQVKDKPVVLLVKTVKGYGMGESAEGKNIAHQVKKMDMSGVKHVRDRFNIAVSDEDIEKLPYIKFEEGSEEYKYLHERRQALNGYVPTRSPRFSQALEVPALEEFAQLFEAQSRPISTTMAFVRSLNVLLKNKSVGKHIVPILADEARTFGMEGLFRQIGIYNPHGQNYTPQDREQVAYYREAIDGQVLQEGINEQGATASWIAAATSYSTNDVPMIPFFVYYSMFGFQRVGDLMWLAGDQRARGFMIGGTSGRTTLNGEGLQHEDGHSHIQSAVIPNCISYDPAFAFEVPVIIQDGIRRMYGPEQEDVYYYITTLNETYDQPAMPKGAEEGIRKGIYKFETVTGQGKGKVQLLGSGAILRHVREAAQLLANDFGVTSDVYSVPSFTEVARNGADVERWNLLHPEAEARTPYIAQVMNDAPAVAATDYIRLYAEQVRAYVPAQSYRVLGTDGFGRSDSRENLREHFEVNAHYVVVAALAELVKQGIFDKKVVADAIAKYGIDADKINPLYA
>CP034110.1|AZI14216.1|1238377_1240276_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAKEIQIPDIGGDEVTVTEVMVKAGDTVEVDQSVINVEGDKASMEVPSPEAGVIKEVLVKVGDKVSTGTPMFILESADSAPASAPAVEEKAAPASTAPTQSAVSSVIEIHVPDIGGDEVNVTEILVNVGDSVAEEQSILNVEGDKASMEVPAPVAGVVKEILIKVGDKVSTGSLVMKFETTAATPAAQPAAEAPAAPAAVSGSVQDVHVPDIGGDEVNVTEIMVAVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMRFEVAGSAPAAAPAAQPAATPAQTQAAAPVQSAQPANQAEVTASASFAHATPVVRRLAREFGVNLDKVKGTGRKGRILKEDVQAYVKAAVKAVESDSVSATASTGAANGAGLGLLPWPKVDFSKFGEVEQVELGRIQKISGANLHRNWVMIPHVTQWDKADITDLEQFRKEQNVLAEKQKLDVKITPLVFIMKAVAKALEAYPRFNSSLSEDAQSLILKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELAEISKKARAGKLTASDMQGGCFTISSLGGIGGTQFTPIVNAPEVAILGVSKSEMTPVWNGKEFTPRLMLPLSLSYDHRVIDGADGARFITFINGVLSDLRRLVM
>CP034110.1|AZI14217.1|1240362_1241787_+|dihydrolipoyl-dehydrogenase
MNKEIKTQVVVLGAGPAGYSAAFRCADLGLDTVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKSLAEHGIVFGEPQTDIDKIRGWKEKVINQLTGGLAGMAKMRKVQVVNGYGKFSGPNTIIVAGDEGETTIHFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALKLKEVPKNLLIMGGGIIGLEMGTVYHALGSNIDVVEMFDQVIPAADKDIVQIYTKRIEKKFNLLLETKVTAVEAKEDGIYVSMEGKAANETRRYDAVLVAIGRTPNGKLIDANVAGVEVDDRGFIHTDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKAEGINYEVAKFPWAASGRAIASDCADGLTKLIFDKDTHRIIGGAIVGTNGGELLGEIGLAIEMGCDAEDLALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKKK
>CP034110.1|AZI14218.1|1242083_1243853_+|hypothetical-protein
MKTFNLNLVSISLGIAFTVTSINSFAAAANPLYAVNSTGSHSSSLNGSVNGGTSAFLYDNGDKSFNKLMIVDKLQQGAESQDRKDFETTYGIQFEWFEHDGSLTEEGKKHIYQAENGTFKSEVHLTKEEKVKFSAQKGSTADSQPTSNNSEATVHPKESSSIISNNSQPEAEGKSGEIIPTPSEKIETKERVEDASSHTELPKMGSATVIPATPTLKMTEARDTTEKAKPVMEIKAEQNLASATSAFSGTLSDLSQTTRAMATSFFNNTAVVQDQSAMVRNNAQYFVSYRHYFVEPIGIDKSDLRRQPSEMNVTTPNVNTYVDYAYHHYTLKNKNFHSKIHRNDITLGGYAQINGYNLGLAMISMKGNSTTLNNYTLASKVKMRTNGLLATFGWAFDKSYLNLGAYAVFSKVNTSRSPFGNSEQHASFNTQQYALDIVYGRSLYQTENSSILLNGGLTNVYYHQDSFNEQTDSQNATPYSLQVDSSAYFNSFAHLGMQASYQTYISSFTTRSDIALRVEQALTANRFDLKLQDGTTITGSKNDKFTVRLSVGQTFIFDKVSIRVGAEFIEGNRTNARLDTVSATLSYRF
>CP034110.1|AZI14219.1|1243937_1245311_-|TolC-family-protein
MLKQSKLSLAIGLSVLLAGCANLDDSYKTSQQDFQQYEELTKQYNIQENWWTLYHDPQLNQLVQQALENNKDLAKAAIAVNTALYNANLIGANLVPSFSGSLSSSASKNINTGGNSTISHGGSLNVSYTLDLWRRLADASSAAEWRHAASEQDLEAARISLINSVILTYYQLGYLNDAISTVNKTINYYSEINRIMQNKFRQGVADRASSDQAQQAVLTAHNTLINYQTQKKTAEATLRNLLNLKPNDSLPATYPHILNVKNVGINLNVPLSAIANRPDVKGYQYRLNSAFKDAKAMQKSWFPSITLGGSLGSSGNKIDNAFNTPIAGGTVGISLPFLNWNAVKWNVKISESAYDLALVNFEQSITKALNDIDTNYFIYNQANQSFENLKQTYDYNKRITQYYKNRYDAGISELREWLNAASTERNSELSILNAKYNLIQSENAVYSAMGGYYSVEQ

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Crispr_ID: CP034110_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034110_3

1648005-1648088

Orphan

Consensus_repeat	Method
TGGGCGTGGCGGTTGAGCATAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034110_3

>merge|CP034110|3|1648005-1648088|CRISPRCasFinder
TGGGCGTGGCGGTTGAGCATAGGAGTTATTTGTAACCACCAAACCAGTAATTGAATTTTATTGGGTGTGGCGGTTGAGCATAGG

>CP034110|3|2|1648005-1648088|CRISPRCasFinder
TGGGCGTGGCGGTTGAGCATAGG	AGTTATTTGTAACCACCAAACCAGTAATTGAATTTTAT
TGGGTGTGGCGGTTGAGCATAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP034110.1\|AZI14522.1\|1645960_1646368_+\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14520.1\|1644249_1645062_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273715
CP034110.1\|AZI14531.1\|1650524_1650842_+\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14535.1\|1653599_1653875_+\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14533.1\|1651083_1651791_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
CP034110.1\|AZI14523.1\|1646385_1646826_-\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14529.1\|1649861_1650032_-\|DUF1508-domain-containing-protein	unknown	unknown	gnl\|CDD\|225956
CP034110.1\|AZI14525.1\|1647177_1647657_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|311152
CP034110.1\|AZI14521.1\|1645058_1645847_-\|phage-regulatory-protein	unknown	unknown	gnl\|CDD\|378235
CP034110.1\|AZI14526.1\|1647653_1647992_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|119397
CP034110.1\|AZI14534.1\|1653269_1653578_+\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14532.1\|1650845_1651103_+\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14519.1\|1643417_1644257_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181180
CP034110.1\|AZI14527.1\|1648213_1648753_+\|hypothetical-protein	unknown	unknown	unknown
CP034110.1\|AZI14518.1\|1642827_1643421_-\|adenine-methyltransferase	unknown	unknown	gnl\|CDD\|368643
CP034110.1\|AZI15264.1\|1652027_1653176_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224129
CP034110.1\|AZI15263.1\|1642381_1642819_-\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
CP034110.1\|AZI14528.1\|1648749_1649514_+\|DUF1828-domain-containing-protein	unknown	unknown	gnl\|CDD\|378071
CP034110.1\|AZI14524.1\|1646874_1647072_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374243
CP034110.1\|AZI14530.1\|1650046_1650268_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034110.1\|AZI14529.1\|1649861_1650032_-\|DUF1508-domain-containing-protein	gnl\|CDD\|225956	COG3422, COG3422, Uncharacterized conserved protein [Function unknown].	8.04965e-19
CP034110.1\|AZI14520.1\|1644249_1645062_-\|hypothetical-protein	gnl\|CDD\|273715	TIGR01610, Replication_protein_15, phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	2.53408e-14
CP034110.1\|AZI14533.1\|1651083_1651791_+\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	1.56071e-09
CP034110.1\|AZI14518.1\|1642827_1643421_-\|adenine-methyltransferase	gnl\|CDD\|368643	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.	1.06517e-29
CP034110.1\|AZI14525.1\|1647177_1647657_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|311152	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.	0.000657693
CP034110.1\|AZI14528.1\|1648749_1649514_+\|DUF1828-domain-containing-protein	gnl\|CDD\|378071	pfam08861, DUF1828, Domain of unknown function DUF1828. This presumed domain is functionally uncharacterized.	9.3099e-11
CP034110.1\|AZI14526.1\|1647653_1647992_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.16953e-09
CP034110.1\|AZI14519.1\|1643417_1644257_-\|AAA-family-ATPase	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	6.22673e-43
CP034110.1\|AZI15264.1\|1652027_1653176_+\|hypothetical-protein	gnl\|CDD\|224129	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].	2.0801e-05
CP034110.1\|AZI15263.1\|1642381_1642819_-\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	5.34949e-23
CP034110.1\|AZI14521.1\|1645058_1645847_-\|phage-regulatory-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	2.16384e-14
CP034110.1\|AZI14524.1\|1646874_1647072_-\|hypothetical-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	5.80545e-06

>CP034110.1|AZI14526.1|1647653_1647992_+|helix-turn-helix-domain-containing-protein
MKNIAKRIKEIRERKGISREDLADNLHLSVETLIGYEEGLTKLSTDLISEFAFVDEHGELFIKRLQQVPNGGIKILSDNPHYAPLDFTQEELERCYIMGKLVKALPLHMIDL
>CP034110.1|AZI14525.1|1647177_1647657_+|helix-turn-helix-domain-containing-protein
MQNQNKEKQMESLEHQEVELSLKDQLVIKRLEQMVKEIGSKIGLAKIADVSPQAVNNWFKNGKVSVDSALKLHKHFGYPVEWILGKDNSDNSVISGNKSLNVVGTTMNGGLVNQVNNEGTLYTEDLVEIKAQLARLETKLDLLQRIETKIDVILMQKEK
>CP034110.1|AZI14524.1|1646874_1647072_-|hypothetical-protein
MTPIEKAILAVGSQAKLAKALGKNSQFIYRMKKSGGRISTQDISADKWKEVTGLSKRELFPEFQD
>CP034110.1|AZI14523.1|1646385_1646826_-|hypothetical-protein
MAMKKTIIEMIEKCQGGKAAVAGFLGMTEQALNNRLYQTKGQRFTCEELIAIELEYGVSNWSDEINRRLGKVSFAVPNENETDLVELSQLQLQELAERGILFAKLNEFLSDGVLTQEEQDVLHKLLHKSQQTTAKAIEVAIAIHKQ
>CP034110.1|AZI14522.1|1645960_1646368_+|hypothetical-protein
MDMSSIFTSVKTTLDLLSGFESNAVLSERVALLKDQIEILRYAHETAQKELSEYKEKCAALENEIASYRQAEQFIFEHGAAFKKTSSGYIEAVYCPNCLTVAGGSFSTFPFQCGKCKWRSMFKVSEFKGIFKSLP
>CP034110.1|AZI14521.1|1645058_1645847_-|phage-regulatory-protein
MTKLLPINTEKSSITMSSREIAQLCEKQHAHVMRDIRNMLDELYPNMDSLDFKGIFIIKNPETGLTSEIRLPKRETMILVSGYRIELRAKIIDRLNELENQQKNTALLPNFNDPVAAARAWADAKEREQRALVREQQALLENQQKSEQIASMESYFRNGISPFEFVKGLNGVNALKVGEFLIGKNWLYQDNRTKRVKSYARDQYLTEETTEISQHGKDPFIAYKPVLLKKGAAKLYEWYVKGNLPMKANWNGEFTQDKAVGL
>CP034110.1|AZI14520.1|1644249_1645062_-|hypothetical-protein
MSNQFIPNSFQLPNAVVDDLICDLTGSELKCYLVIVRKTKGWNKDCDAISISQLMEVTGLSNRAVIDACNHLTEIGLLTRQKGARGVNVFTPNLCKKFTSEESSPVKKVHSTCEESSQDPVKKVHTQNNNKNTTQNNNKKINKKSSVEQSEFELCFADFWQAGLVKVNRAKALKSFGTAFKSSGKSIREFTDMLVLDIRRRFSLGQFGFEKLHPTTYLNNRRWEDDYSQPENVKALPNPLNNKPDAHNGFAKKIYGETKTPEWAEDFINV
>CP034110.1|AZI14519.1|1643417_1644257_-|AAA-family-ATPase
MFKVTLEGLQKELKNALEGFNSEVENAEVKEQIGDCEKHGSYRQFYRKIHFPMGGGIESKTQCPECLKEKILKLEADKARQEQTEREHNINVLKMTSGIAKRFEQARFSNYQETEYNRKAKRFCEAYATKWVDRKSVGGGLILCGKPGTGKNHLASAIAHHIIEQHQDEVLITTALRIIRKVKSTWDKNSSLTENEVMEIYTDKDLLIIDEVGIQFCSESEKIILFEIINERYEQMKPTILISNLSEDELSRYVGERIIDRMREGKGAVINFDWESYRQ
>CP034110.1|AZI14518.1|1642827_1643421_-|adenine-methyltransferase
MTEQQFDKDTWRTPRYFFDWLLQRFNWFDIDGCADHKNALAYRYIGKPAPEDDDDAEGFNKTCIATDFLGEDLFDRLLDEVAETCHFPLRIFVNPPYSNVTPYLKRAKELRDAGYLVVMLLNNDKSTQWYQNHIHNVANEVIDIVGGRINFIHPITGEEIKGNTKGQMVVVFDPAMEDFVQRSVTLDFVKKCGGYNP
>CP034110.1|AZI15263.1|1642381_1642819_-|DUF1367-family-protein
MVKGAGGTFVPADEMFLPALQGFKNGEMYSVEIKRTRNPQFHRKVFAFFKFCFEYWAAENTELQFQSEAKQFDTFRKNLTVLAGFREVTYTIDGRMRVEPQSLSYGNMEQDEFEQCYSALINAAIKHIFNDTTDPNVINQLHSFF
>CP034110.1|AZI14527.1|1648213_1648753_+|hypothetical-protein
MASIEDIIIPQQEINHIMAIEKQIHFKGATWGKKQKTQPYPYWLELKLPFFDSDGLPIPQLRAYFAYRPARRENLMPSMNFIAFYKNRRLFAIDQGEKLVHVNKITHVKPIAESRICGAHYHILHGKENQETGYLLDEKYQKSNDFFELMCYFLAKFNTVAVGQIPHPILSNNGQMELL
>CP034110.1|AZI14528.1|1648749_1649514_+|DUF1828-domain-containing-protein
MICSTVLSNLGYECHSIADDLILINTPFTLEDGSVIQAYIEQVGENRFTVTDDAQTLWEMNARGINLTTNRIDQIKSTLKRYGLNLNDRAEINTTTSGEMLTHNLQRIIQAAIITDTLAMDWYNVPIDKFEMMVKSDFRHHQFPQNIGFDVKKSGLSGHQITIPISLTGGERHTKQIFTTSVKAKGSWSSAYGVLGKIMDLTNPTAQTNDESYVVIDDKAVGDQLNKLILLFNQSPAKILPYDKKDIWLEKLAA
>CP034110.1|AZI14529.1|1649861_1650032_-|DUF1508-domain-containing-protein
MYFEIFKGVNGQWYWRLKAANHEPIAQSEGYTTKQNCLHCIGLVMDTNRQTPVREV
>CP034110.1|AZI14530.1|1650046_1650268_+|hypothetical-protein
MQNEMKRYAISYFFKGKKWCSDVYANSFEEAQEKVKAMSQATIDGELYCSIYVPVKPQSRIARLLLKLLHKFS
>CP034110.1|AZI14531.1|1650524_1650842_+|hypothetical-protein
MMNIVIERNPASKKYCEKAEIRSMGKAGRLARMFAKSRQKKIKTGKPDRIKTALVMLPIPSKSQIEKAAAQFQAVKPNYHKGEIGVNTVRATQKIRRGCQELMRI
>CP034110.1|AZI14532.1|1650845_1651103_+|hypothetical-protein
MKNKITDLNNHLFSQLEKLLDEDLTDEELKREIARANAVSGIASNIIQNSNTAIKAMQLFGDRTIEADAPDFLRISKAQNDKKTL
>CP034110.1|AZI14533.1|1651083_1651791_+|HNH-endonuclease
MTKKRFRFTDEHIAFIREHKDLAPKDLIQAFYQQFGLLKNRQVFRKLKKRLGIISTVQHCNRYTKEELAFIKENCTLPQAELTKLFNQKFNRNQTAQVIRALCAKRGWLTGRNGRFKKGEHLKPIGYERFCPMAKAVLIKTGVKRYERKSHVIWEQAFGKIPQGFVLWFKDGNIQNCELSNLELISRNEMLWRHKLNYHELDSSVKQTFNVFIQLREKLIKLKKQQQQKDRIAKG
>CP034110.1|AZI15264.1|1652027_1653176_+|hypothetical-protein
MKKYELTDEYIEIGFTTKIKLYRIKALVAIASIGVSAGDLGGYIEKESNLDQSGDAWVYDNAKVYDNAKVYGDAVVSGNAKVSGNAKVSGDAVVCGNAVVYGNAKVYGDAKVCGDAKVYGDAEVYGDAVVCGDAKVYDNAVVCGDAEVYDNAVVSGDAEVSGDAKVYGDAVVCGNAVVYDNAEVCGDAVVYGDAEVYGDAKVYGDAVVSGDAKVSGDAVVCGDAVVYGNAKVYGDAVVYGDAVVSGDAVVYGDAEVYGDAKVYGDAVVSGDAKVSGDAVVCGDAVVYGNAVVCGDAKVYGNAVVCGDAKVSERSDIVWFSNVGTEYGTLTVFKTKQGVLWATRGCFSGSVEEFLKKSAEVHDEKTKREYQLLIEVAKSRLGE
>CP034110.1|AZI14534.1|1653269_1653578_+|hypothetical-protein
MKIFINLTAKEATPEQKSAGVIDVDPALRHQFNRALTFFSQPSKALIEERAAYLTTMAAQLNADYVLVDAPLFLISTLESKLKARGIQPVYSLYPYSGFVEV
>CP034110.1|AZI14535.1|1653599_1653875_+|hypothetical-protein
MHDLIKHTIQTLLFLVATIVVLSLAEAYAQTAEDYYAMQGFSTEQLAEMERQANLEWQQEQGDLPPNLTVEAEKYLKNYTALLQEALDNGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120028-120061	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120037-120070	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120046-120079	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120055-120088	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120064-120097	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120073-120106	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120082-120115	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120091-120124	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120100-120133	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120109-120142	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	355515-355548	2	0.941
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120118-120151	3	0.912
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	355506-355539	4	0.882
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	355524-355557	4	0.882
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	355749-355782	4	0.882
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	355758-355791	4	0.882
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	355767-355800	4	0.882
CP034110_1	1.2\|862761\|34\|CP034110\|CRT	862761-862794	34	MT074446	Salmonella phage triss, complete genome	8313-8346	5	0.853
CP034110_1	1.2\|862761\|34\|CP034110\|CRT	862761-862794	34	MT074444	Salmonella phage emhyr, complete genome	7975-8008	5	0.853
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	120019-120052	5	0.853
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MN694154	Marine virus AFVG_250M77, complete genome	21262-21295	6	0.824
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MG945320	UNVERIFIED: Microviridae sp. isolate 1616-1801, complete genome	2316-2349	6	0.824
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	KT264784	Gokushovirus WZ-2015a isolate 36Fra03, complete genome	2579-2612	6	0.824
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	KT264784	Gokushovirus WZ-2015a isolate 36Fra03, complete genome	2588-2621	6	0.824
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_CP012105	Bacillus thuringiensis strain HS18-1 plasmid pHS18-6, complete sequence	992-1025	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_CP050084	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b2, complete sequence	420576-420609	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MN175679	Vibrio phage vB_VpS_BA3, complete genome	37043-37076	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MH925093	UNVERIFIED: Vibrio phage VspDsh_1, complete genome	36862-36895	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MN102376	Vibrio phage vB_VpS_CA8, complete genome	36904-36937	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MT135025	Vibrio phage V07, complete genome	259371-259404	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_CP053209	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence	312495-312528	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	323416-323449	7	0.794
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MN175679	Vibrio phage vB_VpS_BA3, complete genome	37034-37067	8	0.765
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MH925093	UNVERIFIED: Vibrio phage VspDsh_1, complete genome	36853-36886	8	0.765
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MN102376	Vibrio phage vB_VpS_CA8, complete genome	36895-36928	8	0.765
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MT135025	Vibrio phage V07, complete genome	259380-259413	8	0.765
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	MN694348	Marine virus AFVG_250M382, complete genome	6543-6576	9	0.735
CP034110_1	1.3\|862815\|34\|CP034110\|CRT	862815-862848	34	NC_040373	Alces alces faeces associated microvirus MP18 4940, complete genome	2090-2123	9	0.735
CP034110_2	2.1\|1230521\|55\|CP034110\|CRISPRCasFinder	1230521-1230575	55	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	454272-454326	10	0.818
CP034110_2	2.1\|1230521\|55\|CP034110\|CRISPRCasFinder	1230521-1230575	55	NZ_CP048065	Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence	33562-33616	11	0.8
CP034110_1	1.2\|862761\|34\|CP034110\|CRT	862761-862794	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	840519-840552	12	0.647
CP034110_2	2.1\|1230521\|55\|CP034110\|CRISPRCasFinder	1230521-1230575	55	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	202572-202626	12	0.782
CP034110_2	2.1\|1230521\|55\|CP034110\|CRISPRCasFinder	1230521-1230575	55	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	683766-683820	13	0.764

1. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

2. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

3. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

4. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

5. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

6. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

7. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

8. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

9. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

10. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

11. spacer 1.3|862815|34|CP034110|CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 2, identity: 0.941

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgaacctgttg	Protospacer
******************************* .*

12. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 3, identity: 0.912

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
tctgttgaacctgttgaacctgttgaacctgttg	Protospacer
.****************************** .*

13. spacer 1.3|862815|34|CP034110|CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 4, identity: 0.882

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttggtcctgttgaacctgttgaacctgttg	Protospacer
*******. ********************** .*

14. spacer 1.3|862815|34|CP034110|CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 4, identity: 0.882

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttggtcctgttg	Protospacer
*************************. **** .*

15. spacer 1.3|862815|34|CP034110|CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 4, identity: 0.882

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttggtcctgttgaacctgttgaacctgttg	Protospacer
*******. ********************** .*

16. spacer 1.3|862815|34|CP034110|CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 4, identity: 0.882

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttggtcctgttg	Protospacer
*************************. **** .*

17. spacer 1.3|862815|34|CP034110|CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 4, identity: 0.882

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttggtcctgttgaacctgttg	Protospacer
****************. ************* .*

18. spacer 1.2|862761|34|CP034110|CRT matches to MT074446 (Salmonella phage triss, complete genome) position: , mismatch: 5, identity: 0.853

gaaactgaacataaacctgaaactgaa-cataaac	CRISPR spacer
gaaactgaagaaaaacctgaaactgaagcacaag-	Protospacer
********* * *************** **.**.

19. spacer 1.2|862761|34|CP034110|CRT matches to MT074444 (Salmonella phage emhyr, complete genome) position: , mismatch: 5, identity: 0.853

gaaactgaacataaacctgaaactgaa-cataaac	CRISPR spacer
gaaactgaagaaaaacctgaaactgaagcacaag-	Protospacer
********* * *************** **.**.

20. spacer 1.3|862815|34|CP034110|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 5, identity: 0.853

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgaacctgttgattatgaga	Protospacer
************************** . *** .

21. spacer 1.3|862815|34|CP034110|CRT matches to MN694154 (Marine virus AFVG_250M77, complete genome) position: , mismatch: 6, identity: 0.824

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgatccagttgaacccgtgt	Protospacer
***************** ** ********.*

22. spacer 1.3|862815|34|CP034110|CRT matches to MG945320 (UNVERIFIED: Microviridae sp. isolate 1616-1801, complete genome) position: , mismatch: 6, identity: 0.824

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgtcgaacctgttgagtctaagc	Protospacer
**************.***********..**.*

23. spacer 1.3|862815|34|CP034110|CRT matches to KT264784 (Gokushovirus WZ-2015a isolate 36Fra03, complete genome) position: , mismatch: 6, identity: 0.824

cctgttgaacctgttgaacctgttg--aacctgacg	CRISPR spacer
cctgttgaaactgttgaaactgttgaaaacttaa--	Protospacer
********* ******** ******  ***.*.*

24. spacer 1.3|862815|34|CP034110|CRT matches to KT264784 (Gokushovirus WZ-2015a isolate 36Fra03, complete genome) position: , mismatch: 6, identity: 0.824

cctgttg--aacctgttgaacctgttgaacctgacg	CRISPR spacer
--tgttgaaaacctgttgaaactgttgaaactgttg	Protospacer
  *****  *********** ******** *** .*

25. spacer 1.3|862815|34|CP034110|CRT matches to NZ_CP012105 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-6, complete sequence) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttggacctgttgaacctgttgggccctctg	Protospacer
*******.*****************..**.  .*

26. spacer 1.3|862815|34|CP034110|CRT matches to NZ_CP050084 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b2, complete sequence) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
gctgttgaagctgttgaagctgttgaaggtggtg	Protospacer
 ******** ******** ********  **..*

27. spacer 1.3|862815|34|CP034110|CRT matches to MN175679 (Vibrio phage vB_VpS_BA3, complete genome) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
aatgatgaacctgttgaacctgttgagccggttg	Protospacer
  ** *********************.** * .*

28. spacer 1.3|862815|34|CP034110|CRT matches to MH925093 (UNVERIFIED: Vibrio phage VspDsh_1, complete genome) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
aatgatgaacctgttgaacctgttgagccggttg	Protospacer
  ** *********************.** * .*

29. spacer 1.3|862815|34|CP034110|CRT matches to MN102376 (Vibrio phage vB_VpS_CA8, complete genome) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
aatgatgaacctgttgaacctgttgagccggttg	Protospacer
  ** *********************.** * .*

30. spacer 1.3|862815|34|CP034110|CRT matches to MT135025 (Vibrio phage V07, complete genome) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
aatgatgaacctgttgaacctgttgagccggttg	Protospacer
  ** *********************.** * .*

31. spacer 1.3|862815|34|CP034110|CRT matches to NZ_CP053209 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
gctgttgaagctgttgaagctgttgaaggtggtg	Protospacer
 ******** ******** ********  **..*

32. spacer 1.3|862815|34|CP034110|CRT matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 7, identity: 0.794

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgtacctgttgtacctgttgcttcttgcg	Protospacer
******* ******** ********  .** .**

33. spacer 1.3|862815|34|CP034110|CRT matches to MN175679 (Vibrio phage vB_VpS_BA3, complete genome) position: , mismatch: 8, identity: 0.765

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgagccggttgtcgatggtg	Protospacer
*****************.** ****    **..*

34. spacer 1.3|862815|34|CP034110|CRT matches to MH925093 (UNVERIFIED: Vibrio phage VspDsh_1, complete genome) position: , mismatch: 8, identity: 0.765

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgagccggttgtcgatggtg	Protospacer
*****************.** ****    **..*

35. spacer 1.3|862815|34|CP034110|CRT matches to MN102376 (Vibrio phage vB_VpS_CA8, complete genome) position: , mismatch: 8, identity: 0.765

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgagccggttgttgatggtg	Protospacer
*****************.** ****    **..*

36. spacer 1.3|862815|34|CP034110|CRT matches to MT135025 (Vibrio phage V07, complete genome) position: , mismatch: 8, identity: 0.765

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
cctgttgaacctgttgagccggttgttgatggtg	Protospacer
*****************.** ****    **..*

37. spacer 1.3|862815|34|CP034110|CRT matches to MN694348 (Marine virus AFVG_250M382, complete genome) position: , mismatch: 9, identity: 0.735

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
ttagatgaaggtgttgaacctgttgaacctaaac	Protospacer
.. * ****  *******************.*

38. spacer 1.3|862815|34|CP034110|CRT matches to NC_040373 (Alces alces faeces associated microvirus MP18 4940, complete genome) position: , mismatch: 9, identity: 0.735

cctgttgaacctgttgaacctgttgaacctgacg	CRISPR spacer
gttgttgaacctgttgtatctgttgagaaagaag	Protospacer
 .************** *.*******.   ** *

39. spacer 2.1|1230521|55|CP034110|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.818

aaccatggcaaggttgtgctctaccaactgagctattcccgcaagagataagata	CRISPR spacer
aaccttggcaaggttgcgctctaccaactgagctattcccgcttgggagcagtgc	Protospacer
**** ***********.*************************  *.**  **

40. spacer 2.1|1230521|55|CP034110|CRISPRCasFinder matches to NZ_CP048065 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p9, complete sequence) position: , mismatch: 11, identity: 0.8

aaccatggcaaggttgtgctctaccaactgagctattcccgcaagagataagata	CRISPR spacer
aaccttggcaaggttgtgctctaccaactgagctattcccgcgcaactggaaagg	Protospacer
**** *************************************. .*   .*.* .

41. spacer 1.2|862761|34|CP034110|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 12, identity: 0.647

gaaactgaacataaacctgaaactgaacataaac	CRISPR spacer
cggcgtgaacatgaagctgaaactgaacactcga	Protospacer
 ..  *******.** *************.  .

42. spacer 2.1|1230521|55|CP034110|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.782

aaccatggcaaggttgtgctctaccaactgagctattcccgcaagagataagata	CRISPR spacer
gaccttggcaaggtcgtgctctaccaactgagctattcccgcagtatcaagcaac	Protospacer
.*** *********.****************************. *   *. *

43. spacer 2.1|1230521|55|CP034110|CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 13, identity: 0.764

aaccatggcaaggttgtgctctaccaactgagctattcccgc-----------aagagat	CRISPR spacer
aaccttggcaaggttgtgctctaccaactgagctatttccgctttttacttctaa-----	Protospacer
**** ********************************.****           **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

409705 : 450500

Haemophilus_phage(35.71%)

holin,terminase,plate,integrase

attL 437972:437996|attR 451219:451243

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI13528.1\|409705_411844_-	hypothetical protein	Q94MY0	Haemophilus_virus	7.6e-64	37.1
AZI13529.1\|411848_412427_-	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	7.0e-73	68.4
AZI13530.1\|412426_413557_-\|plate	baseplate J/gp47 family protein	Q7Y5S4	Haemophilus_phage	7.7e-140	66.6
AZI13531.1\|413607_413958_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	8.6e-42	66.7
AZI13532.1\|413954_414602_-\|plate	baseplate protein	D0UIH7	Aggregatibacter_phage	7.6e-68	60.8
AZI13533.1\|414598_415435_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	2.8e-115	71.9
AZI15207.1\|416605_416932_-	hemocin immunity protein	NA	NA	NA	NA
AZI15208.1\|416979_417252_-	hemocin structural protein	NA	NA	NA	NA
AZI13534.1\|417278_417986_-	ABC transporter	NA	NA	NA	NA
AZI13535.1\|417988_418585_-	HmcC	NA	NA	NA	NA
AZI13536.1\|418547_419396_-	hemin receptor	NA	NA	NA	NA
AZI13537.1\|420582_421422_-	RepB family plasmid replication initiator protein	A0A1V0E006	Clostridioides_phage	2.2e-14	35.7
AZI13538.1\|421397_421700_-	hypothetical protein	Q7Y5S9	Haemophilus_phage	6.1e-28	56.8
AZI13539.1\|421703_422465_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	3.0e-63	53.5
AZI13540.1\|422532_422787_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.4e-17	55.8
AZI13541.1\|422770_423118_+	XRE family transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	8.1e-24	55.3
AZI13542.1\|423120_425055_-	hypothetical protein	D0UII2	Aggregatibacter_phage	4.7e-04	48.2
AZI13543.1\|425184_425610_-	hypothetical protein	Q776V6	Haemophilus_phage	3.6e-34	56.2
AZI13544.1\|425612_426041_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	7.3e-59	78.2
AZI13545.1\|426050_427553_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	1.8e-216	75.1
AZI13546.1\|427556_428069_-	hypothetical protein	Q7Y5T6	Haemophilus_phage	1.0e-35	50.6
AZI13547.1\|428123_428339_-	hypothetical protein	Q776V7	Haemophilus_phage	3.1e-10	46.1
AZI13548.1\|428335_428779_-	hypothetical protein	Q7Y5T8	Haemophilus_phage	3.3e-30	49.6
AZI13549.1\|428775_429126_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	2.4e-23	51.7
AZI13550.1\|429134_430037_-	DUF2184 domain-containing protein	Q7Y5U0	Haemophilus_phage	3.0e-102	62.8
AZI13551.1\|430049_430502_-	hypothetical protein	D0UIJ1	Aggregatibacter_phage	3.6e-32	52.7
AZI13552.1\|430501_431623_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	7.0e-85	60.2
AZI13553.1\|431690_431972_-	hypothetical protein	NA	NA	NA	NA
AZI13554.1\|431974_433372_-	hypothetical protein	Q7Y5U5	Haemophilus_phage	1.9e-55	44.7
AZI13555.1\|433292_434609_-	DUF1073 domain-containing protein	D0UIJ6	Aggregatibacter_phage	5.1e-119	52.8
AZI13556.1\|434605_435955_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	4.0e-143	58.3
AZI13557.1\|435935_436463_-\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	2.4e-19	43.2
AZI13558.1\|436473_436728_-	hypothetical protein	A0A0M3LQ80	Mannheimia_phage	3.6e-21	58.0
AZI15209.1\|436891_437254_-	DUF2570 domain-containing protein	NA	NA	NA	NA
AZI13559.1\|437213_437621_-	M15 family peptidase	W0LI70	Edwardsiella_phage	1.5e-45	64.4
AZI13560.1\|437613_437946_-\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	4.1e-09	36.8
437972:437996	attL	NA	NA	NA	NA
AZI13561.1\|438049_438592_+	hypothetical protein	A0A127KNL4	Pseudomonas_phage	2.5e-19	34.9
AZI13562.1\|438857_439370_-	kinase	NA	NA	NA	NA
AZI13563.1\|439546_440305_-	helix-turn-helix domain-containing protein	Q76H56	Enterobacteria_phage	6.5e-18	26.1
AZI13564.1\|440424_440625_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.0e-07	44.6
AZI13565.1\|440647_440941_+	hypothetical protein	Q7Y5W3	Haemophilus_phage	1.6e-36	79.2
AZI13566.1\|440988_441396_-	hypothetical protein	NA	NA	NA	NA
AZI13567.1\|441505_442276_+	hypothetical protein	D0UIL6	Aggregatibacter_phage	1.3e-45	45.4
AZI13568.1\|442272_443079_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	3.3e-28	62.0
AZI13569.1\|443075_443759_+	phage lambda replication protein P	A0A0M3LS65	Mannheimia_phage	4.6e-39	42.2
AZI13570.1\|443867_444503_+	DUF1367 family protein	A0A2I7RNU5	Vibrio_phage	3.8e-19	29.6
AZI13571.1\|444503_444788_+	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	2.0e-36	80.6
AZI13572.1\|445113_445464_+	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	6.2e-16	42.1
AZI13573.1\|445463_445826_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AZI13574.1\|446070_447075_+	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	3.8e-05	24.4
AZI13575.1\|447372_447543_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AZI13576.1\|447557_447779_+	hypothetical protein	NA	NA	NA	NA
AZI13577.1\|448035_448353_+	hypothetical protein	NA	NA	NA	NA
AZI13578.1\|448356_448614_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.0e-11	53.6
AZI13579.1\|448594_449302_+	HNH endonuclease	NA	NA	NA	NA
AZI13580.1\|449513_450500_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	3.6e-61	39.0
451219:451243	attR	NA	NA	NA	NA

DBSCAN-SWA_2

455277 : 463849

Mannheimia_phage(30.0%)

bacteriocin,integrase

attL 452338:452353|attR 464846:464861

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
452338:452353	attL	NA	NA	NA	NA
AZI13587.1\|455277_455589_+	hypothetical protein	A0A0M3LPX7	Mannheimia_phage	1.8e-14	52.5
AZI13588.1\|455518_455785_+	hypothetical protein	NA	NA	NA	NA
AZI13589.1\|455774_456722_+	hypothetical protein	NA	NA	NA	NA
AZI13590.1\|456731_457007_+	hypothetical protein	NA	NA	NA	NA
AZI13591.1\|457148_457373_+	hypothetical protein	NA	NA	NA	NA
AZI13592.1\|457369_457870_+	siphovirus Gp157 family protein	A0A0E3U2R8	Fusobacterium_phage	3.8e-14	35.5
AZI13593.1\|457880_458768_+	ATP-binding protein	A0A1B1P9H8	Acinetobacter_phage	1.3e-57	55.9
AZI13594.1\|458767_459247_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	2.1e-38	52.8
AZI13595.1\|459255_459504_+	hypothetical protein	NA	NA	NA	NA
AZI13596.1\|459546_459861_+	hypothetical protein	X2CY11	Brucella_phage	3.6e-07	40.2
AZI13597.1\|459883_460066_-	ribbon-helix-helix protein, CopG family	Q19US2	Mannheimia_phage	4.0e-06	52.6
AZI13598.1\|460375_460585_-	ribbon-helix-helix protein, CopG family	A0A0M3LQV3	Mannheimia_phage	6.1e-11	58.1
AZI13599.1\|461099_461762_+\|bacteriocin	bacteriocin	D0UIM5	Aggregatibacter_phage	6.5e-14	43.2
AZI13600.1\|462005_462602_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
AZI13601.1\|462632_462956_+	DNA-binding protein	Q7Y5X6	Haemophilus_phage	1.2e-32	64.5
AZI13602.1\|462829_463849_+\|integrase	site-specific integrase	Q7Y5X7	Haemophilus_phage	2.3e-175	88.2
464846:464861	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1636498 : 1647657

Mannheimia_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI14510.1\|1636498_1637398_-	hypothetical protein	A0A0M3LR56	Mannheimia_phage	5.5e-48	72.1
AZI14511.1\|1637742_1637961_-	hypothetical protein	NA	NA	NA	NA
AZI14512.1\|1637953_1639180_-	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	5.0e-44	49.3
AZI14513.1\|1639402_1639681_+	Killer protein	NA	NA	NA	NA
AZI14514.1\|1639690_1639984_+	addiction module antidote protein, HigA family	I6ZVM3	Aeromonas_phage	4.7e-09	48.7
AZI14515.1\|1640093_1640756_-	hypothetical protein	NA	NA	NA	NA
AZI14516.1\|1640745_1641387_-	hypothetical protein	NA	NA	NA	NA
AZI14517.1\|1641460_1642057_-	recombinase NinG	H6WRY9	Salmonella_phage	4.8e-32	42.4
AZI15263.1\|1642381_1642819_-	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	8.5e-55	71.0
AZI14518.1\|1642827_1643421_-	adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	6.4e-53	56.8
AZI14519.1\|1643417_1644257_-	AAA family ATPase	K7PLU3	Enterobacteria_phage	8.4e-67	48.5
AZI14520.1\|1644249_1645062_-	hypothetical protein	A0A0P0IKQ2	Acinetobacter_phage	3.8e-16	46.7
AZI14521.1\|1645058_1645847_-	phage regulatory protein	A0A2I7R415	Vibrio_phage	8.2e-32	35.7
AZI14522.1\|1645960_1646368_+	hypothetical protein	NA	NA	NA	NA
AZI14523.1\|1646385_1646826_-	hypothetical protein	NA	NA	NA	NA
AZI14524.1\|1646874_1647072_-	hypothetical protein	NA	NA	NA	NA
AZI14525.1\|1647177_1647657_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	3.6e-06	33.8

DBSCAN-SWA_4

1652027 : 1661838

Mannheimia_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI15264.1\|1652027_1653176_+	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	8.9e-19	77.9
AZI14534.1\|1653269_1653578_+	hypothetical protein	NA	NA	NA	NA
AZI14535.1\|1653599_1653875_+	hypothetical protein	NA	NA	NA	NA
AZI15265.1\|1654753_1655695_+	hypothetical protein	A0A0M3LR66	Mannheimia_phage	1.2e-45	48.0
AZI14536.1\|1655705_1656485_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	9.8e-86	62.1
AZI14537.1\|1656481_1657114_+	exonuclease	A0A0M3LPU0	Mannheimia_phage	1.0e-77	68.6
AZI14538.1\|1657101_1657581_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	1.4e-39	53.5
AZI14539.1\|1657667_1657985_+	hypothetical protein	NA	NA	NA	NA
AZI14540.1\|1657981_1658377_+	hypothetical protein	NA	NA	NA	NA
AZI14541.1\|1658436_1659333_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	2.9e-73	49.7
AZI14542.1\|1659329_1659539_+	hypothetical protein	NA	NA	NA	NA
AZI14543.1\|1659554_1659752_+	hypothetical protein	NA	NA	NA	NA
AZI14544.1\|1659754_1660084_+	hypothetical protein	NA	NA	NA	NA
AZI14545.1\|1660199_1660703_+	hypothetical protein	A0A0M3LNU4	Mannheimia_phage	1.6e-12	32.5
AZI14546.1\|1660695_1660929_+	hypothetical protein	NA	NA	NA	NA
AZI14547.1\|1661004_1661289_+	hypothetical protein	NA	NA	NA	NA
AZI14548.1\|1661355_1661838_+	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	7.7e-65	72.3

DBSCAN-SWA_5

1869399 : 1877300

Anomala_cuprea_entomopoxvirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI14706.1\|1869399_1870047_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.9e-10	29.7
AZI15278.1\|1870719_1870971_-	hypothetical protein	NA	NA	NA	NA
AZI14707.1\|1871467_1872094_-	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	5.7e-12	34.4
AZI14708.1\|1872093_1872519_-	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	3.3e-19	41.3
AZI14709.1\|1872511_1873195_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.1e-53	48.9
AZI14710.1\|1873369_1873693_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AZI14711.1\|1874736_1875846_+	methionine biosynthesis PLP-dependent protein	A0A1V0SL56	Klosneuvirus	4.0e-16	23.8
AZI14712.1\|1875863_1876859_+	2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	4.9e-66	38.4
AZI14713.1\|1876976_1877300_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.9e-19	49.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection