CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
AP018147	Escherichia coli plasmid pM217_FII DNA, complete genome, isolate: M217	0 crisprs	NA	0	1
AP019189	Escherichia coli M217 DNA, complete genome	7 crisprs	csa3,PD-DExK,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,DEDDh,DinG,c2c9_V-U4	14	13
AP019190	Escherichia coli M217 plasmid pM217_I1 DNA, complete genome	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3429 : 48930

Escherichia_phage(28.57%)

transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BAX83942.1\|3429_4134_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
BAX83943.1\|4145_5627_-	InsE protein	NA	NA	NA	NA
BAX83944.1\|5853_6195_-	Chaperonin	NA	NA	NA	NA
BAX83945.1\|6155_6605_-	Uncharacterized protein	NA	NA	NA	NA
BAX83946.1\|7234_7972_-	erythromycin resistance protein	E4ZFQ0	Streptococcus_phage	6.3e-135	99.6
BAX83947.1\|8327_9032_+\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
BAX83948.1\|9153_10068_+	macrolide 2'-phosphotransferase I	NA	NA	NA	NA
BAX83949.1\|10064_11303_+	Mrx protein	NA	NA	NA	NA
BAX83950.1\|11302_11887_+	MphR(A) protein	NA	NA	NA	NA
BAX83951.1\|12379_13174_-\|transposase	transposase of IS6100	A0A077SL39	Escherichia_phage	4.5e-86	65.7
BAX83952.1\|13183_13411_-\|transposase	transposase	Q1MVP5	Enterobacteria_phage	1.1e-34	100.0
BAX83953.1\|13445_14003_+	Tn3 resolvase	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
BAX83954.1\|14185_15046_+	beta-lactamase	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
BAX83955.1\|15215_15971_+	RmtB protein	NA	NA	NA	NA
BAX83956.1\|16051_16600_-	sodium/proton antiporter, CPA1 family	NA	NA	NA	NA
BAX83957.1\|16635_17013_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	8.2e-22	58.1
BAX83958.1\|17206_17911_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
BAX83959.1\|18174_18369_+\|transposase	transposase	NA	NA	NA	NA
BAX83960.1\|18469_19282_+	NDM-5	NA	NA	NA	NA
BAX83961.1\|19285_19651_+	bleomycin resistance protein	NA	NA	NA	NA
BAX83962.1\|19655_20294_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
BAX83963.1\|20304_21336_-	oxidoreductase domain protein	NA	NA	NA	NA
BAX83964.1\|21648_23190_-\|transposase	transposase	NA	NA	NA	NA
BAX83965.1\|23594_24434_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
BAX83966.1\|24427_24775_-	QacEdelta1	NA	NA	NA	NA
BAX83967.1\|24938_25718_-	aminoglycoside resistance protein	NA	NA	NA	NA
BAX83968.1\|26137_26635_-	dihydrofolate reductase	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
BAX83969.1\|26779_27667_+	IntI1	A0A1P8DJJ6	Virus_Rctr41k	9.2e-56	42.2
BAX83970.1\|27700_28405_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
BAX83971.1\|28455_29985_+\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	1.4e-293	100.0
BAX83972.1\|30053_30938_+	Putative uncharacterized protein	NA	NA	NA	NA
BAX83973.1\|31448_34124_-	Uncharacterized protein	NA	NA	NA	NA
BAX83974.1\|34426_35428_+	hypothetical protein	NA	NA	NA	NA
BAX83975.1\|35652_36063_-	Uncharacterized protein	E5AGG6	Erwinia_phage	2.9e-28	54.8
BAX83976.1\|36223_36577_-	stable plasmid inheritance protein B	NA	NA	NA	NA
BAX83977.1\|36576_37539_-	plasmid segregation protein	A0A222YXF2	Escherichia_phage	2.4e-94	53.9
BAX83978.1\|38055_38739_+	DNA methylase family protein	A0A2I7RE86	Vibrio_phage	3.3e-29	38.2
BAX83979.1\|38739_38961_+	YfcA protein	NA	NA	NA	NA
BAX83980.1\|38973_39408_+	YcgB protein	NA	NA	NA	NA
BAX83981.1\|39452_40223_+	YchA protein	NA	NA	NA	NA
BAX83982.1\|40280_40502_-	Uncharacterized protein	NA	NA	NA	NA
BAX83983.1\|40582_41008_+	antirestriction protein	NA	NA	NA	NA
BAX83984.1\|41054_41477_+	YcjA protein	NA	NA	NA	NA
BAX83985.1\|41473_41665_+	YffA protein	NA	NA	NA	NA
BAX83986.1\|42016_42439_-	Uncharacterized protein	NA	NA	NA	NA
BAX83987.1\|42699_42930_+	YdaB protein	NA	NA	NA	NA
BAX83988.1\|42981_44343_+	YdbA protein	NA	NA	NA	NA
BAX83989.1\|44390_44954_+	YdcA protein	A8HNV9	Thalassomonas_phage	1.0e-20	37.3
BAX83990.1\|44979_45198_+	Uncharacterized protein	NA	NA	NA	NA
BAX83991.1\|46298_46868_-	Caspase domain protein	NA	NA	NA	NA
BAX83992.1\|46852_47692_-\|transposase	insertion element IS2 transposase InsD	Q9ZXG3	Shigella_phage	4.0e-162	98.6
BAX83993.1\|47715_48081_-	insertion sequence 2 OrfA protein	Q76S41	Shigella_phage	9.6e-60	100.0
BAX83994.1\|48186_48930_+\|integrase	integrase family protein	Q7M297	Enterobacteria_phage	3.3e-83	60.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. AP019189

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CRISPR-Cas detection and classification

Crispr_ID: AP019189_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_1

1082467-1082801

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGA	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRT

5 spacers

The CRISPR arrays of AP019189_1

>merge|AP019189|1|1082467-1082801|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCTGTGTTTGCGGCATTAACGCTCACCAGTATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGTCATGGGTGCTGCTGTTGCAGAGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCAGATACACGGCTTTGTATTCCGTGCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCAC

>AP019189|1|1|1082467-1082799|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGTATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>AP019189|1|1|1082467-1082801|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCTG	TGTTTGCGGCATTAACGCTCACCAGTATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCGA	CGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCGA	GCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCGA	ATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCGG	AGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCAC

>AP019189|1|1|1082467-1082799|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGTATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG76830.1\|1092041_1092617_-\|antiterminator-regulatory-protein	unknown	unknown	gnl\|CDD\|224865
AP019189.1\|BBG76832.1\|1092884_1094186_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
AP019189.1\|BBG76819.1\|1078932_1080231_+\|enolase	unknown	unknown	gnl\|CDD\|234617
AP019189.1\|BBG76816.1\|1075782_1076118_+\|mRNA-interferase-toxin	unknown	unknown	gnl\|CDD\|182138
AP019189.1\|BBG76827.1\|1088942_1090280_+\|MFS-sugar-transporter	unknown	unknown	gnl\|CDD\|340929
AP019189.1\|BBG76814.1\|1073222_1075457_+\|(p)ppGpp-synthetase-RelA	unknown	unknown	gnl\|CDD\|182797
AP019189.1\|BBG76823.1\|1083438_1084917_-\|kinase	unknown	unknown	gnl\|CDD\|212662
AP019189.1\|BBG76824.1\|1084943_1086221_-\|transporter	unknown	unknown	gnl\|CDD\|349949
AP019189.1\|BBG76831.1\|1092633_1092894_-\|ferredoxin	unknown	unknown	gnl\|CDD\|225289
AP019189.1\|BBG76825.1\|1086539_1087325_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
AP019189.1\|BBG76817.1\|1076188_1076980_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
AP019189.1\|BBG76829.1\|1091033_1091894_+\|flavoprotein	unknown	unknown	gnl\|CDD\|224936
AP019189.1\|BBG76822.1\|1081455_1082127_+\|7-carboxy-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275126
AP019189.1\|BBG76821.1\|1081176_1081317_-\|membrane-stress-resistance-protein	unknown	unknown	unknown
AP019189.1\|BBG76818.1\|1077207_1078845_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
AP019189.1\|BBG76815.1\|1075534_1075783_+\|antitoxin-of-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|182082
AP019189.1\|BBG76826.1\|1087394_1088849_+\|FAD-linked-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
AP019189.1\|BBG76813.1\|1071873_1073175_+\|23S-rRNA-m(5)U1939-methyltransferase	unknown	unknown	gnl\|CDD\|237291
AP019189.1\|BBG76828.1\|1090257_1091037_+\|flavoprotein	unknown	unknown	gnl\|CDD\|224997
AP019189.1\|BBG76820.1\|1080290_1081163_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG76830.1\|1092041_1092617_-\|antiterminator-regulatory-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
AP019189.1\|BBG76832.1\|1092884_1094186_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	6.79502e-125
AP019189.1\|BBG76820.1\|1080290_1081163_-\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.25867e-100
AP019189.1\|BBG76816.1\|1075782_1076118_+\|mRNA-interferase-toxin	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
AP019189.1\|BBG76827.1\|1088942_1090280_+\|MFS-sugar-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
AP019189.1\|BBG76814.1\|1073222_1075457_+\|(p)ppGpp-synthetase-RelA	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
AP019189.1\|BBG76819.1\|1078932_1080231_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
AP019189.1\|BBG76823.1\|1083438_1084917_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	4.82999e-110
AP019189.1\|BBG76825.1\|1086539_1087325_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.96451e-139
AP019189.1\|BBG76831.1\|1092633_1092894_-\|ferredoxin	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
AP019189.1\|BBG76817.1\|1076188_1076980_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
AP019189.1\|BBG76829.1\|1091033_1091894_+\|flavoprotein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
AP019189.1\|BBG76822.1\|1081455_1082127_+\|7-carboxy-7-deazaguanine-synthase	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
AP019189.1\|BBG76818.1\|1077207_1078845_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
AP019189.1\|BBG76815.1\|1075534_1075783_+\|antitoxin-of-toxin-antitoxin-system	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
AP019189.1\|BBG76826.1\|1087394_1088849_+\|FAD-linked-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.41244e-83
AP019189.1\|BBG76813.1\|1071873_1073175_+\|23S-rRNA-m(5)U1939-methyltransferase	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
AP019189.1\|BBG76828.1\|1090257_1091037_+\|flavoprotein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
AP019189.1\|BBG76824.1\|1084943_1086221_-\|transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.60446e-29

>AP019189.1|BBG76822.1|1081455_1082127_+|7-carboxy-7-deazaguanine-synthase
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>AP019189.1|BBG76821.1|1081176_1081317_-|membrane-stress-resistance-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>AP019189.1|BBG76820.1|1080290_1081163_-|hypothetical-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>AP019189.1|BBG76819.1|1078932_1080231_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>AP019189.1|BBG76818.1|1077207_1078845_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>AP019189.1|BBG76817.1|1076188_1076980_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>AP019189.1|BBG76816.1|1075782_1076118_+|mRNA-interferase-toxin
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>AP019189.1|BBG76815.1|1075534_1075783_+|antitoxin-of-toxin-antitoxin-system
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>AP019189.1|BBG76814.1|1073222_1075457_+|(p)ppGpp-synthetase-RelA
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>AP019189.1|BBG76813.1|1071873_1073175_+|23S-rRNA-m(5)U1939-methyltransferase
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>AP019189.1|BBG76823.1|1083438_1084917_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEVLGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>AP019189.1|BBG76824.1|1084943_1086221_-|transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>AP019189.1|BBG76825.1|1086539_1087325_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>AP019189.1|BBG76826.1|1087394_1088849_+|FAD-linked-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNIVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>AP019189.1|BBG76827.1|1088942_1090280_+|MFS-sugar-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>AP019189.1|BBG76828.1|1090257_1091037_+|flavoprotein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>AP019189.1|BBG76829.1|1091033_1091894_+|flavoprotein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>AP019189.1|BBG76830.1|1092041_1092617_-|antiterminator-regulatory-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>AP019189.1|BBG76831.1|1092633_1092894_-|ferredoxin
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>AP019189.1|BBG76832.1|1092884_1094186_-|FAD-dependent-oxidoreductase
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: AP019189_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_2

1109127-1109766

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of AP019189_2

>merge|AP019189|2|1109127-1109766|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGATCGGGTCTGGAATTTCTGAGCGGTCGCGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTTTATAAATCCGGAGATACGGAAACTAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACTCACCCCGAAAGAGATTGCCAGCCAGCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCACCAGCGCGTTTTTTGCCGGGGCCATAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGAACTCACCACGATTGTTAATATGGACGATGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGGGCGCATGACCGTAAACATTATCCCCCGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTTCAGACATAGGTGGAATGATGGACTACGAGTTCCCCGCGTTAGCGGGGATAAACCGCCCGGTAGCCAGGTTTGCAACGCCTGAACCGAGAGTTCCCCGCGCCAGCAGGGATAAACCGGCAACGACGGTGAGATTTCACGCCTGACGCTGGTGTTCCCCGCATCAGCGGGGATAAACCG

>AP019189|2|2|1109127-1109522|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>AP019189|2|2|1109127-1109766|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

>AP019189|2|2|1109127-1109766|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG76844.1\|1106577_1107216_+\|CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
AP019189.1\|BBG76845.1\|1107817_1108735_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
AP019189.1\|BBG76841.1\|1103664_1104960_+\|CRISPR-associated-protein-CasA/Cse1	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
AP019189.1\|BBG76853.1\|1114646_1114958_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
AP019189.1\|BBG76852.1\|1114437_1114659_+\|hypothetical-protein	unknown	unknown	unknown
AP019189.1\|BBG76856.1\|1116162_1117212_+\|tRNA(Glu)-pseudouridine(13)-synthase	unknown	unknown	gnl\|CDD\|234884
AP019189.1\|BBG76838.1\|1100720_1100996_+\|transposase	unknown	unknown	gnl\|CDD\|226202
AP019189.1\|BBG76851.1\|1114129_1114453_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|371891
AP019189.1\|BBG76846.1\|1108736_1109021_+\|CRISPR-adaptation-ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
AP019189.1\|BBG76848.1\|1111137_1112046_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
AP019189.1\|BBG76842.1\|1104952_1105435_+\|CRISPR-associated-protein-CasB/Cse2	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
AP019189.1\|BBG76849.1\|1112047_1113475_+\|sulfate-adenylyltransferase-subunit-1	unknown	unknown	gnl\|CDD\|235349
AP019189.1\|BBG76843.1\|1105447_1106539_+\|CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
AP019189.1\|BBG76854.1\|1114976_1115687_+\|4-diphosphocytidyl-2C-methyl-D-erythritol-synthase	unknown	unknown	gnl\|CDD\|234670
AP019189.1\|BBG76839.1\|1101151_1101418_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281403
AP019189.1\|BBG76855.1\|1115686_1116166_+\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
AP019189.1\|BBG76837.1\|1099593_1100670_+\|hypothetical-protein	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
AP019189.1\|BBG76847.1\|1109848_1110886_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|182299
AP019189.1\|BBG76850.1\|1113474_1114080_+\|adenosine-5'-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
AP019189.1\|BBG76840.1\|1101609_1103037_+\|hypothetical-protein	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG76844.1\|1106577_1107216_+\|CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.27066e-97
AP019189.1\|BBG76845.1\|1107817_1108735_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.68794e-159
AP019189.1\|BBG76841.1\|1103664_1104960_+\|CRISPR-associated-protein-CasA/Cse1	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
AP019189.1\|BBG76853.1\|1114646_1114958_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
AP019189.1\|BBG76856.1\|1116162_1117212_+\|tRNA(Glu)-pseudouridine(13)-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
AP019189.1\|BBG76838.1\|1100720_1100996_+\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.09419e-27
AP019189.1\|BBG76851.1\|1114129_1114453_+\|inner-membrane-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
AP019189.1\|BBG76846.1\|1108736_1109021_+\|CRISPR-adaptation-ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.76227e-62
AP019189.1\|BBG76848.1\|1111137_1112046_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
AP019189.1\|BBG76842.1\|1104952_1105435_+\|CRISPR-associated-protein-CasB/Cse2	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76293e-33
AP019189.1\|BBG76849.1\|1112047_1113475_+\|sulfate-adenylyltransferase-subunit-1	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
AP019189.1\|BBG76843.1\|1105447_1106539_+\|CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.43824e-154
AP019189.1\|BBG76854.1\|1114976_1115687_+\|4-diphosphocytidyl-2C-methyl-D-erythritol-synthase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
AP019189.1\|BBG76839.1\|1101151_1101418_+\|hypothetical-protein	gnl\|CDD\|281403	pfam03400, DDE_Tnp_IS1, IS1 transposase. Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.	3.44978e-52
AP019189.1\|BBG76855.1\|1115686_1116166_+\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
AP019189.1\|BBG76837.1\|1099593_1100670_+\|hypothetical-protein	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
AP019189.1\|BBG76847.1\|1109848_1110886_-\|alkaline-phosphatase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
AP019189.1\|BBG76850.1\|1113474_1114080_+\|adenosine-5'-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
AP019189.1\|BBG76840.1\|1101609_1103037_+\|hypothetical-protein	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0

>AP019189.1|BBG76846.1|1108736_1109021_+|CRISPR-adaptation-ssRNA-endonuclease
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
>AP019189.1|BBG76845.1|1107817_1108735_+|CRISPR-associated-protein-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>AP019189.1|BBG76844.1|1106577_1107216_+|CRISPR-associated-protein-Cas5/CasD
MQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>AP019189.1|BBG76843.1|1105447_1106539_+|CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>AP019189.1|BBG76842.1|1104952_1105435_+|CRISPR-associated-protein-CasB/Cse2
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>AP019189.1|BBG76841.1|1103664_1104960_+|CRISPR-associated-protein-CasA/Cse1
MNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>AP019189.1|BBG76840.1|1101609_1103037_+|hypothetical-protein
MFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIYLADMLPDLTMLERMIAAANAGAQACLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
>AP019189.1|BBG76839.1|1101151_1101418_+|hypothetical-protein
MATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
>AP019189.1|BBG76838.1|1100720_1100996_+|transposase
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>AP019189.1|BBG76837.1|1099593_1100670_+|hypothetical-protein
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMG
>AP019189.1|BBG76847.1|1109848_1110886_-|alkaline-phosphatase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>AP019189.1|BBG76848.1|1111137_1112046_+|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>AP019189.1|BBG76849.1|1112047_1113475_+|sulfate-adenylyltransferase-subunit-1
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>AP019189.1|BBG76850.1|1113474_1114080_+|adenosine-5'-phosphosulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>AP019189.1|BBG76851.1|1114129_1114453_+|inner-membrane-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>AP019189.1|BBG76852.1|1114437_1114659_+|hypothetical-protein
MATGLICTFPSPLFIIQTVTNNEIMFCTPWVYVTMDKCGTFARVVAVSPTEDVESSSDAWDDDAVFQGAGWVN
>AP019189.1|BBG76853.1|1114646_1114958_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>AP019189.1|BBG76854.1|1114976_1115687_+|4-diphosphocytidyl-2C-methyl-D-erythritol-synthase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>AP019189.1|BBG76855.1|1115686_1116166_+|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>AP019189.1|BBG76856.1|1116162_1117212_+|tRNA(Glu)-pseudouridine(13)-synthase
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE

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Crispr_ID: AP019189_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_3

1605549-1605666

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019189_3

>merge|AP019189|3|1605549-1605666|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>AP019189|3|3|1605549-1605666|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG77311.1\|1617876_1618500_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225774
AP019189.1\|BBG77310.1\|1616191_1617880_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227030
AP019189.1\|BBG77308.1\|1612546_1613269_-\|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl\|CDD\|235350
AP019189.1\|BBG77298.1\|1597311_1598571_-\|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|225617
AP019189.1\|BBG77314.1\|1624692_1625469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227021
AP019189.1\|BBG77297.1\|1596124_1597315_-\|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-C-subunit	unknown	unknown	gnl\|CDD\|132422
AP019189.1\|BBG77301.1\|1601824_1602901_+\|periplasmic-glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
AP019189.1\|BBG77306.1\|1605685_1607971_-\|ribonucleoside-diphosphate-reductase-1-alpha-subunit	unknown	unknown	gnl\|CDD\|181649
AP019189.1\|BBG77312.1\|1618643_1623038_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
AP019189.1\|BBG77305.1\|1604321_1605452_-\|ribonucleoside-diphosphate-reductase-1-beta-subunit-ferritin-like-protein	unknown	unknown	gnl\|CDD\|181647
AP019189.1\|BBG77300.1\|1600461_1601820_+\|sn-glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
AP019189.1\|BBG77307.1\|1608954_1612419_+\|adhesin	unknown	unknown	gnl\|CDD\|182059
AP019189.1\|BBG77299.1\|1598560_1600189_-\|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-large-FAD/NAD(P)-binding-subunit	unknown	unknown	gnl\|CDD\|236847
AP019189.1\|BBG77309.1\|1613415_1616043_+\|DNA-gyrase-GyrA	unknown	unknown	gnl\|CDD\|235502
AP019189.1\|BBG77303.1\|1603363_1604014_+\|acid-inducible-Kdo/WaaP-family-kinase	unknown	unknown	gnl\|CDD\|182136
AP019189.1\|BBG77313.1\|1623038_1624688_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227732
AP019189.1\|BBG77296.1\|1595032_1595932_-\|transposase	unknown	unknown	gnl\|CDD\|182167
AP019189.1\|BBG77304.1\|1604067_1604322_-\|ferredoxin-involved-with-ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|182668
AP019189.1\|BBG77315.1\|1625542_1626727_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
AP019189.1\|BBG77302.1\|1602942_1603149_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182050

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG77311.1\|1617876_1618500_+\|hypothetical-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
AP019189.1\|BBG77310.1\|1616191_1617880_+\|hypothetical-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
AP019189.1\|BBG77308.1\|1612546_1613269_-\|3-demethylubiquinone-9-3-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
AP019189.1\|BBG77298.1\|1597311_1598571_-\|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
AP019189.1\|BBG77314.1\|1624692_1625469_+\|hypothetical-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.17009e-153
AP019189.1\|BBG77297.1\|1596124_1597315_-\|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-C-subunit	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
AP019189.1\|BBG77301.1\|1601824_1602901_+\|periplasmic-glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
AP019189.1\|BBG77306.1\|1605685_1607971_-\|ribonucleoside-diphosphate-reductase-1-alpha-subunit	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
AP019189.1\|BBG77312.1\|1618643_1623038_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
AP019189.1\|BBG77305.1\|1604321_1605452_-\|ribonucleoside-diphosphate-reductase-1-beta-subunit-ferritin-like-protein	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
AP019189.1\|BBG77300.1\|1600461_1601820_+\|sn-glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
AP019189.1\|BBG77307.1\|1608954_1612419_+\|adhesin	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
AP019189.1\|BBG77299.1\|1598560_1600189_-\|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-large-FAD/NAD(P)-binding-subunit	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
AP019189.1\|BBG77309.1\|1613415_1616043_+\|DNA-gyrase-GyrA	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
AP019189.1\|BBG77303.1\|1603363_1604014_+\|acid-inducible-Kdo/WaaP-family-kinase	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
AP019189.1\|BBG77313.1\|1623038_1624688_+\|hypothetical-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	8.04949e-127
AP019189.1\|BBG77296.1\|1595032_1595932_-\|transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
AP019189.1\|BBG77304.1\|1604067_1604322_-\|ferredoxin-involved-with-ribonucleotide-reductase	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
AP019189.1\|BBG77315.1\|1625542_1626727_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
AP019189.1\|BBG77302.1\|1602942_1603149_-\|hypothetical-protein	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	1.13329e-36

>AP019189.1|BBG77305.1|1604321_1605452_-|ribonucleoside-diphosphate-reductase-1-beta-subunit-ferritin-like-protein
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>AP019189.1|BBG77304.1|1604067_1604322_-|ferredoxin-involved-with-ribonucleotide-reductase
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>AP019189.1|BBG77303.1|1603363_1604014_+|acid-inducible-Kdo/WaaP-family-kinase
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>AP019189.1|BBG77302.1|1602942_1603149_-|hypothetical-protein
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCMEQLVAIGKI
>AP019189.1|BBG77301.1|1601824_1602901_+|periplasmic-glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>AP019189.1|BBG77300.1|1600461_1601820_+|sn-glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>AP019189.1|BBG77299.1|1598560_1600189_-|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-large-FAD/NAD(P)-binding-subunit
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>AP019189.1|BBG77298.1|1597311_1598571_-|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-membrane-anchor-subunit
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>AP019189.1|BBG77297.1|1596124_1597315_-|anaerobic-sn-glycerol-3-phosphate-dehydrogenase-C-subunit
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>AP019189.1|BBG77296.1|1595032_1595932_-|transposase
MTESTASSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>AP019189.1|BBG77306.1|1605685_1607971_-|ribonucleoside-diphosphate-reductase-1-alpha-subunit
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>AP019189.1|BBG77307.1|1608954_1612419_+|adhesin
MTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>AP019189.1|BBG77308.1|1612546_1613269_-|3-demethylubiquinone-9-3-methyltransferase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>AP019189.1|BBG77309.1|1613415_1616043_+|DNA-gyrase-GyrA
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>AP019189.1|BBG77310.1|1616191_1617880_+|hypothetical-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>AP019189.1|BBG77311.1|1617876_1618500_+|hypothetical-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>AP019189.1|BBG77312.1|1618643_1623038_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGENALILPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPALAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>AP019189.1|BBG77313.1|1623038_1624688_+|hypothetical-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTWARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>AP019189.1|BBG77314.1|1624692_1625469_+|hypothetical-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>AP019189.1|BBG77315.1|1625542_1626727_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: AP019189_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_4

2239610-2239733

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019189_4

>merge|AP019189|4|2239610-2239733|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>AP019189|4|4|2239610-2239733|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG77898.1\|2246376_2247309_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
AP019189.1\|BBG77891.1\|2237439_2239044_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182134
AP019189.1\|BBG77902.1\|2250997_2251744_-\|endopeptidase	unknown	unknown	gnl\|CDD\|366353
AP019189.1\|BBG77889.1\|2235826_2236612_+\|thiosulfate-reductase-cytochrome-B	unknown	unknown	gnl\|CDD\|184968
AP019189.1\|BBG77892.1\|2239169_2239475_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
AP019189.1\|BBG77885.1\|2231697_2232324_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182135
AP019189.1\|BBG77901.1\|2250288_2250870_-\|Fe-Mn-family-superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
AP019189.1\|BBG77900.1\|2248884_2250054_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
AP019189.1\|BBG77886.1\|2232344_2234447_+\|oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|236629
AP019189.1\|BBG77895.1\|2242932_2243574_+\|riboflavin-synthase-alpha-subunit	unknown	unknown	gnl\|CDD\|183846
AP019189.1\|BBG77887.1\|2234459_2235098_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160
AP019189.1\|BBG77888.1\|2235275_2235830_+\|oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
AP019189.1\|BBG77893.1\|2240047_2241304_+\|possible-enzyme	unknown	unknown	gnl\|CDD\|137602
AP019189.1\|BBG77890.1\|2236663_2237428_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
AP019189.1\|BBG77896.1\|2243613_2244762_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
AP019189.1\|BBG77894.1\|2241344_2242718_-\|multidrug-efflux-system-transporter	unknown	unknown	gnl\|CDD\|234981
AP019189.1\|BBG77899.1\|2247305_2248331_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|236739
AP019189.1\|BBG77883.1\|2229064_2230477_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
AP019189.1\|BBG77897.1\|2245052_2246264_-\|arabinose-efflux-transporter	unknown	unknown	gnl\|CDD\|182924
AP019189.1\|BBG77884.1\|2231033_2231243_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182359

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG77898.1\|2246376_2247309_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
AP019189.1\|BBG77891.1\|2237439_2239044_-\|oxidoreductase	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
AP019189.1\|BBG77902.1\|2250997_2251744_-\|endopeptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.86348e-46
AP019189.1\|BBG77889.1\|2235826_2236612_+\|thiosulfate-reductase-cytochrome-B	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
AP019189.1\|BBG77892.1\|2239169_2239475_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
AP019189.1\|BBG77885.1\|2231697_2232324_+\|oxidoreductase	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
AP019189.1\|BBG77901.1\|2250288_2250870_-\|Fe-Mn-family-superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
AP019189.1\|BBG77900.1\|2248884_2250054_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
AP019189.1\|BBG77886.1\|2232344_2234447_+\|oxidoreductase-subunit	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
AP019189.1\|BBG77895.1\|2242932_2243574_+\|riboflavin-synthase-alpha-subunit	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
AP019189.1\|BBG77887.1\|2234459_2235098_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	7.60222e-120
AP019189.1\|BBG77888.1\|2235275_2235830_+\|oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.57005e-64
AP019189.1\|BBG77893.1\|2240047_2241304_+\|possible-enzyme	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
AP019189.1\|BBG77890.1\|2236663_2237428_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.13201e-163
AP019189.1\|BBG77896.1\|2243613_2244762_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
AP019189.1\|BBG77894.1\|2241344_2242718_-\|multidrug-efflux-system-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
AP019189.1\|BBG77899.1\|2247305_2248331_-\|transcriptional-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
AP019189.1\|BBG77883.1\|2229064_2230477_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
AP019189.1\|BBG77897.1\|2245052_2246264_-\|arabinose-efflux-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
AP019189.1\|BBG77884.1\|2231033_2231243_+\|hypothetical-protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34

>AP019189.1|BBG77892.1|2239169_2239475_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>AP019189.1|BBG77891.1|2237439_2239044_-|oxidoreductase
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>AP019189.1|BBG77890.1|2236663_2237428_+|hypothetical-protein
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARITTAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>AP019189.1|BBG77889.1|2235826_2236612_+|thiosulfate-reductase-cytochrome-B
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>AP019189.1|BBG77888.1|2235275_2235830_+|oxidoreductase-Fe-S-subunit
MIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>AP019189.1|BBG77887.1|2234459_2235098_+|hypothetical-protein
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>AP019189.1|BBG77886.1|2232344_2234447_+|oxidoreductase-subunit
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>AP019189.1|BBG77885.1|2231697_2232324_+|oxidoreductase
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>AP019189.1|BBG77884.1|2231033_2231243_+|hypothetical-protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>AP019189.1|BBG77883.1|2229064_2230477_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>AP019189.1|BBG77893.1|2240047_2241304_+|possible-enzyme
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>AP019189.1|BBG77894.1|2241344_2242718_-|multidrug-efflux-system-transporter
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>AP019189.1|BBG77895.1|2242932_2243574_+|riboflavin-synthase-alpha-subunit
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>AP019189.1|BBG77896.1|2243613_2244762_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>AP019189.1|BBG77897.1|2245052_2246264_-|arabinose-efflux-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKLVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>AP019189.1|BBG77898.1|2246376_2247309_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>AP019189.1|BBG77899.1|2247305_2248331_-|transcriptional-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>AP019189.1|BBG77900.1|2248884_2250054_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>AP019189.1|BBG77901.1|2250288_2250870_-|Fe-Mn-family-superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>AP019189.1|BBG77902.1|2250997_2251744_-|endopeptidase
MAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: AP019189_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_6

3168793-3168937

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019189_6

>merge|AP019189|6|3168793-3168937|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>AP019189|6|6|3168793-3168937|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG78764.1\|3176293_3177112_+\|pyridoxal-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|182523
AP019189.1\|BBG78755.1\|3164340_3165381_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|185063
AP019189.1\|BBG78749.1\|3156691_3157681_-\|molybdopterin-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|234672
AP019189.1\|BBG78763.1\|3175143_3176139_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
AP019189.1\|BBG78768.1\|3179802_3179952_-\|membrane-protein	unknown	unknown	gnl\|CDD\|371231
AP019189.1\|BBG78753.1\|3162447_3163203_-\|malonyl-ACP-O-methyltransferase	unknown	unknown	gnl\|CDD\|182340
AP019189.1\|BBG78759.1\|3168960_3171222_-\|aconitase-family-protein	unknown	unknown	gnl\|CDD\|183125
AP019189.1\|BBG78762.1\|3174149_3175103_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
AP019189.1\|BBG78752.1\|3161777_3162455_-\|dethiobiotin-synthetase	unknown	unknown	gnl\|CDD\|234625
AP019189.1\|BBG78754.1\|3163189_3164344_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
AP019189.1\|BBG78760.1\|3171404_3172838_-\|membrane-protein	unknown	unknown	gnl\|CDD\|279307
AP019189.1\|BBG78751.1\|3159177_3161199_-\|excision-nuclease-of-nucleotide-excision-repair	unknown	unknown	gnl\|CDD\|235395
AP019189.1\|BBG78750.1\|3158077_3158986_+\|CofD-superfamily-transferase	unknown	unknown	gnl\|CDD\|211689
AP019189.1\|BBG78766.1\|3178173_3178863_-\|molybdate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
AP019189.1\|BBG78756.1\|3165524_3166757_+\|7,8-diaminopelargonic-acid-synthase	unknown	unknown	gnl\|CDD\|181189
AP019189.1\|BBG78758.1\|3167443_3168727_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709
AP019189.1\|BBG78767.1\|3178862_3179636_-\|molybdate-ABC-transporter-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|182641
AP019189.1\|BBG78765.1\|3177112_3178171_-\|molybdate-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|182993
AP019189.1\|BBG78761.1\|3172913_3173861_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380230
AP019189.1\|BBG78757.1\|3166815_3167292_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG78764.1\|3176293_3177112_+\|pyridoxal-phosphate-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
AP019189.1\|BBG78755.1\|3164340_3165381_-\|biotin-synthase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
AP019189.1\|BBG78749.1\|3156691_3157681_-\|molybdopterin-biosynthesis-protein-A	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
AP019189.1\|BBG78763.1\|3175143_3176139_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
AP019189.1\|BBG78768.1\|3179802_3179952_-\|membrane-protein	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
AP019189.1\|BBG78753.1\|3162447_3163203_-\|malonyl-ACP-O-methyltransferase	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
AP019189.1\|BBG78759.1\|3168960_3171222_-\|aconitase-family-protein	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
AP019189.1\|BBG78762.1\|3174149_3175103_+\|transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
AP019189.1\|BBG78752.1\|3161777_3162455_-\|dethiobiotin-synthetase	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.13421e-109
AP019189.1\|BBG78754.1\|3163189_3164344_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
AP019189.1\|BBG78760.1\|3171404_3172838_-\|membrane-protein	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
AP019189.1\|BBG78751.1\|3159177_3161199_-\|excision-nuclease-of-nucleotide-excision-repair	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
AP019189.1\|BBG78750.1\|3158077_3158986_+\|CofD-superfamily-transferase	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
AP019189.1\|BBG78766.1\|3178173_3178863_-\|molybdate-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	5.28451e-145
AP019189.1\|BBG78756.1\|3165524_3166757_+\|7,8-diaminopelargonic-acid-synthase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
AP019189.1\|BBG78758.1\|3167443_3168727_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
AP019189.1\|BBG78767.1\|3178862_3179636_-\|molybdate-ABC-transporter-periplasmic-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
AP019189.1\|BBG78765.1\|3177112_3178171_-\|molybdate-ABC-transporter-ATPase	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
AP019189.1\|BBG78761.1\|3172913_3173861_-\|hypothetical-protein	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
AP019189.1\|BBG78757.1\|3166815_3167292_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118

>AP019189.1|BBG78758.1|3167443_3168727_+|acyl-CoA-thioesterase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>AP019189.1|BBG78757.1|3166815_3167292_+|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>AP019189.1|BBG78756.1|3165524_3166757_+|7,8-diaminopelargonic-acid-synthase
MTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>AP019189.1|BBG78755.1|3164340_3165381_-|biotin-synthase
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>AP019189.1|BBG78754.1|3163189_3164344_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>AP019189.1|BBG78753.1|3162447_3163203_-|malonyl-ACP-O-methyltransferase
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>AP019189.1|BBG78752.1|3161777_3162455_-|dethiobiotin-synthetase
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLHNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>AP019189.1|BBG78751.1|3159177_3161199_-|excision-nuclease-of-nucleotide-excision-repair
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>AP019189.1|BBG78750.1|3158077_3158986_+|CofD-superfamily-transferase
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>AP019189.1|BBG78749.1|3156691_3157681_-|molybdopterin-biosynthesis-protein-A
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVASWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG
>AP019189.1|BBG78759.1|3168960_3171222_-|aconitase-family-protein
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>AP019189.1|BBG78760.1|3171404_3172838_-|membrane-protein
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>AP019189.1|BBG78761.1|3172913_3173861_-|hypothetical-protein
MAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>AP019189.1|BBG78762.1|3174149_3175103_+|transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>AP019189.1|BBG78763.1|3175143_3176139_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>AP019189.1|BBG78764.1|3176293_3177112_+|pyridoxal-phosphate-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDSFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>AP019189.1|BBG78765.1|3177112_3178171_-|molybdate-ABC-transporter-ATPase
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>AP019189.1|BBG78766.1|3178173_3178863_-|molybdate-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIIFIALAMISLLISEWLARISRERAGR
>AP019189.1|BBG78767.1|3178862_3179636_-|molybdate-ABC-transporter-periplasmic-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGIKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>AP019189.1|BBG78768.1|3179802_3179952_-|membrane-protein
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: AP019189_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_7

3418915-3419011

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019189_7

>merge|AP019189|7|3418915-3419011|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>AP019189|7|7|3418915-3419011|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG78973.1\|3412635_3413502_+\|5,10-methylene-tetrahydrofolate-dehydrogenase	unknown	unknown	gnl\|CDD\|236760
AP019189.1\|BBG78985.1\|3424013_3425063_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
AP019189.1\|BBG78976.1\|3414380_3415766_-\|cysteinyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234705
AP019189.1\|BBG78972.1\|3411622_3412165_-\|type-1-fimbrial-protein-subunit-A	unknown	unknown	gnl\|CDD\|237920
AP019189.1\|BBG78982.1\|3419934_3420750_-\|anaerobic-allantoin-catabolic-oxamate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|378658
AP019189.1\|BBG78979.1\|3417276_3417786_+\|N5-carboxyaminoimidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
AP019189.1\|BBG78980.1\|3417782_3418850_+\|N5-carboxyaminoimidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
AP019189.1\|BBG78977.1\|3415939_3416434_+\|peptidyl-prolyl-cis-trans-isomerase-B	unknown	unknown	gnl\|CDD\|182734
AP019189.1\|BBG78975.1\|3413823_3414345_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|224899
AP019189.1\|BBG78981.1\|3419044_3419938_-\|carbonate-kinase	unknown	unknown	gnl\|CDD\|181831
AP019189.1\|BBG78978.1\|3416436_3417159_+\|UDP-2,3-diacylglucosamine-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|235420
AP019189.1\|BBG78987.1\|3426330_3427116_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200251
AP019189.1\|BBG78986.1\|3425084_3426320_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|274471
AP019189.1\|BBG78974.1\|3413503_3413716_+\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|183166
AP019189.1\|BBG78971.1\|3410710_3411403_-\|periplasmic-pilus-chaperone	unknown	unknown	gnl\|CDD\|185117
AP019189.1\|BBG78989.1\|3428510_3429812_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
AP019189.1\|BBG78984.1\|3422029_3423697_-\|NAD(P)-binding-acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|180395
AP019189.1\|BBG78990.1\|3429868_3431230_-\|allantoinase	unknown	unknown	gnl\|CDD\|169193
AP019189.1\|BBG78983.1\|3420760_3422020_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377673
AP019189.1\|BBG78988.1\|3427343_3428489_-\|glycerate-kinase-II	unknown	unknown	gnl\|CDD\|182152

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG78973.1\|3412635_3413502_+\|5,10-methylene-tetrahydrofolate-dehydrogenase	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
AP019189.1\|BBG78985.1\|3424013_3425063_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
AP019189.1\|BBG78976.1\|3414380_3415766_-\|cysteinyl-tRNA-synthetase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
AP019189.1\|BBG78972.1\|3411622_3412165_-\|type-1-fimbrial-protein-subunit-A	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
AP019189.1\|BBG78982.1\|3419934_3420750_-\|anaerobic-allantoin-catabolic-oxamate-carbamoyltransferase	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
AP019189.1\|BBG78979.1\|3417276_3417786_+\|N5-carboxyaminoimidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
AP019189.1\|BBG78980.1\|3417782_3418850_+\|N5-carboxyaminoimidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178
AP019189.1\|BBG78977.1\|3415939_3416434_+\|peptidyl-prolyl-cis-trans-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
AP019189.1\|BBG78975.1\|3413823_3414345_+\|inner-membrane-protein	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.2285e-30
AP019189.1\|BBG78981.1\|3419044_3419938_-\|carbonate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
AP019189.1\|BBG78978.1\|3416436_3417159_+\|UDP-2,3-diacylglucosamine-pyrophosphohydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
AP019189.1\|BBG78987.1\|3426330_3427116_+\|hypothetical-protein	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
AP019189.1\|BBG78986.1\|3425084_3426320_+\|allantoate-amidohydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
AP019189.1\|BBG78974.1\|3413503_3413716_+\|ribosome-associated-protein	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
AP019189.1\|BBG78971.1\|3410710_3411403_-\|periplasmic-pilus-chaperone	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
AP019189.1\|BBG78989.1\|3428510_3429812_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
AP019189.1\|BBG78984.1\|3422029_3423697_-\|NAD(P)-binding-acyl-CoA-synthetase	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
AP019189.1\|BBG78990.1\|3429868_3431230_-\|allantoinase	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
AP019189.1\|BBG78983.1\|3420760_3422020_-\|hypothetical-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131
AP019189.1\|BBG78988.1\|3427343_3428489_-\|glycerate-kinase-II	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0

>AP019189.1|BBG78980.1|3417782_3418850_+|N5-carboxyaminoimidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>AP019189.1|BBG78979.1|3417276_3417786_+|N5-carboxyaminoimidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>AP019189.1|BBG78978.1|3416436_3417159_+|UDP-2,3-diacylglucosamine-pyrophosphohydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>AP019189.1|BBG78977.1|3415939_3416434_+|peptidyl-prolyl-cis-trans-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>AP019189.1|BBG78976.1|3414380_3415766_-|cysteinyl-tRNA-synthetase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>AP019189.1|BBG78975.1|3413823_3414345_+|inner-membrane-protein
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFVFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>AP019189.1|BBG78974.1|3413503_3413716_+|ribosome-associated-protein
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>AP019189.1|BBG78973.1|3412635_3413502_+|5,10-methylene-tetrahydrofolate-dehydrogenase
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>AP019189.1|BBG78972.1|3411622_3412165_-|type-1-fimbrial-protein-subunit-A
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>AP019189.1|BBG78971.1|3410710_3411403_-|periplasmic-pilus-chaperone
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>AP019189.1|BBG78981.1|3419044_3419938_-|carbonate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>AP019189.1|BBG78982.1|3419934_3420750_-|anaerobic-allantoin-catabolic-oxamate-carbamoyltransferase
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>AP019189.1|BBG78983.1|3420760_3422020_-|hypothetical-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>AP019189.1|BBG78984.1|3422029_3423697_-|NAD(P)-binding-acyl-CoA-synthetase
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALMQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>AP019189.1|BBG78985.1|3424013_3425063_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>AP019189.1|BBG78986.1|3425084_3426320_+|allantoate-amidohydrolase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>AP019189.1|BBG78987.1|3426330_3427116_+|hypothetical-protein
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>AP019189.1|BBG78988.1|3427343_3428489_-|glycerate-kinase-II
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>AP019189.1|BBG78989.1|3428510_3429812_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>AP019189.1|BBG78990.1|3429868_3431230_-|allantoinase
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: AP019189_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019189_8

3559053-3559197

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019189_8

>merge|AP019189|8|3559053-3559197|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>AP019189|8|8|3559053-3559197|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
AP019189.1\|BBG79114.1\|3565366_3566482_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|182329
AP019189.1\|BBG79108.1\|3561811_3562096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182565
AP019189.1\|BBG79110.1\|3563102_3563294_-\|OxyR-regulated-protein	unknown	unknown	gnl\|CDD\|182421
AP019189.1\|BBG79095.1\|3544191_3545262_-\|S-adenosylmethionine:tRNA-ribosyltransferase-isomerase	unknown	unknown	gnl\|CDD\|234666
AP019189.1\|BBG79105.1\|3559220_3560129_-\|manno(fructo)kinase	unknown	unknown	gnl\|CDD\|236565
AP019189.1\|BBG79107.1\|3561322_3561604_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|287885
AP019189.1\|BBG79102.1\|3553320_3554523_+\|exonuclease	unknown	unknown	gnl\|CDD\|182871
AP019189.1\|BBG79103.1\|3554519_3557666_+\|exonuclease	unknown	unknown	gnl\|CDD\|182330
AP019189.1\|BBG79099.1\|3549362_3550682_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331
AP019189.1\|BBG79113.1\|3564540_3565350_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
AP019189.1\|BBG79098.1\|3547913_3549287_-\|proline-specific-permease	unknown	unknown	gnl\|CDD\|182566
AP019189.1\|BBG79109.1\|3562167_3562845_-\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
AP019189.1\|BBG79104.1\|3557707_3558976_+\|L-arabinose-inducible-transporter	unknown	unknown	gnl\|CDD\|182234
AP019189.1\|BBG79111.1\|3563343_3563811_-\|shikimate-kinase-II	unknown	unknown	gnl\|CDD\|235153
AP019189.1\|BBG79101.1\|3552441_3553131_-\|two-component-regulatory-system-response-regulator-PhoB	unknown	unknown	gnl\|CDD\|182277
AP019189.1\|BBG79100.1\|3551088_3552384_-\|two-component-system-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
AP019189.1\|BBG79096.1\|3545354_3545936_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|182207
AP019189.1\|BBG79112.1\|3564050_3564395_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178882
AP019189.1\|BBG79097.1\|3545940_3547758_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
AP019189.1\|BBG79106.1\|3560187_3561165_+\|recombination-associated-protein-rdgC	unknown	unknown	gnl\|CDD\|225521

Protein	Function_ID	Function_description	E-value
AP019189.1\|BBG79114.1\|3565366_3566482_-\|diguanylate-cyclase	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
AP019189.1\|BBG79108.1\|3561811_3562096_-\|hypothetical-protein	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
AP019189.1\|BBG79110.1\|3563102_3563294_-\|OxyR-regulated-protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
AP019189.1\|BBG79095.1\|3544191_3545262_-\|S-adenosylmethionine:tRNA-ribosyltransferase-isomerase	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
AP019189.1\|BBG79105.1\|3559220_3560129_-\|manno(fructo)kinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
AP019189.1\|BBG79107.1\|3561322_3561604_-\|hypothetical-protein	gnl\|CDD\|287885	pfam10971, DUF2773, Protein of unknown function (DUF2773). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.	1.10173e-36
AP019189.1\|BBG79102.1\|3553320_3554523_+\|exonuclease	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
AP019189.1\|BBG79103.1\|3554519_3557666_+\|exonuclease	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
AP019189.1\|BBG79099.1\|3549362_3550682_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
AP019189.1\|BBG79113.1\|3564540_3565350_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
AP019189.1\|BBG79098.1\|3547913_3549287_-\|proline-specific-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
AP019189.1\|BBG79109.1\|3562167_3562845_-\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
AP019189.1\|BBG79104.1\|3557707_3558976_+\|L-arabinose-inducible-transporter	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
AP019189.1\|BBG79111.1\|3563343_3563811_-\|shikimate-kinase-II	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.75826e-90
AP019189.1\|BBG79101.1\|3552441_3553131_-\|two-component-regulatory-system-response-regulator-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
AP019189.1\|BBG79100.1\|3551088_3552384_-\|two-component-system-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
AP019189.1\|BBG79096.1\|3545354_3545936_+\|acyl-carrier-protein	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
AP019189.1\|BBG79112.1\|3564050_3564395_-\|hypothetical-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	4.40398e-59
AP019189.1\|BBG79097.1\|3545940_3547758_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
AP019189.1\|BBG79106.1\|3560187_3561165_+\|recombination-associated-protein-rdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0

>AP019189.1|BBG79104.1|3557707_3558976_+|L-arabinose-inducible-transporter
MALLVVILQAITLLATVIGSRSGGCDGGMKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>AP019189.1|BBG79103.1|3554519_3557666_+|exonuclease
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>AP019189.1|BBG79102.1|3553320_3554523_+|exonuclease
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>AP019189.1|BBG79101.1|3552441_3553131_-|two-component-regulatory-system-response-regulator-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>AP019189.1|BBG79100.1|3551088_3552384_-|two-component-system-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>AP019189.1|BBG79099.1|3549362_3550682_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>AP019189.1|BBG79098.1|3547913_3549287_-|proline-specific-permease
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>AP019189.1|BBG79097.1|3545940_3547758_-|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>AP019189.1|BBG79096.1|3545354_3545936_+|acyl-carrier-protein
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>AP019189.1|BBG79095.1|3544191_3545262_-|S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>AP019189.1|BBG79105.1|3559220_3560129_-|manno(fructo)kinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>AP019189.1|BBG79106.1|3560187_3561165_+|recombination-associated-protein-rdgC
MQGRRQFVIMPAKFNDKAVEIIMLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>AP019189.1|BBG79107.1|3561322_3561604_-|hypothetical-protein
MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEARHRLEEKQ
>AP019189.1|BBG79108.1|3561811_3562096_-|hypothetical-protein
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>AP019189.1|BBG79109.1|3562167_3562845_-|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>AP019189.1|BBG79110.1|3563102_3563294_-|OxyR-regulated-protein
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>AP019189.1|BBG79111.1|3563343_3563811_-|shikimate-kinase-II
MALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>AP019189.1|BBG79112.1|3564050_3564395_-|hypothetical-protein
MPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>AP019189.1|BBG79113.1|3564540_3565350_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>AP019189.1|BBG79114.1|3565366_3566482_-|diguanylate-cyclase
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP019189_5	5.1\|2907323\|40\|AP019189\|CRISPRCasFinder	2907323-2907362	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
AP019189_4	4.1\|2239653\|38\|AP019189\|CRISPRCasFinder	2239653-2239690	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
AP019189_2	2.4\|1109340\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109340-1109371	32	NC_021229	Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919	65474-65505	5	0.844
AP019189_1	1.7\|1082558\|31\|AP019189\|CRISPRCasFinder	1082558-1082588	31	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755174-755204	6	0.806
AP019189_1	1.7\|1082558\|31\|AP019189\|CRISPRCasFinder	1082558-1082588	31	MH067970	Arthrobacter sp. strain ANT_H40 plasmid pA40H1, complete sequence	47826-47856	6	0.806
AP019189_2	2.4\|1109340\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109340-1109371	32	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	208287-208318	6	0.812
AP019189_1	1.10\|1082741\|31\|AP019189\|CRISPRCasFinder	1082741-1082771	31	MG945629	UNVERIFIED: Microviridae sp. isolate 6200-1602, complete genome	4209-4239	7	0.774
AP019189_1	1.10\|1082741\|31\|AP019189\|CRISPRCasFinder	1082741-1082771	31	MK814759	Gordonia phage Reyja, complete genome	4468-4498	7	0.774
AP019189_2	2.5\|1109401\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109401-1109432	32	MK416018	Klebsiella phage ST147-VIM1phi7.1, complete genome	24790-24821	7	0.781
AP019189_2	2.6\|1109462\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109462-1109493	32	MF351863	Synechococcus phage Bellamy, complete genome	123998-124029	7	0.781
AP019189_1	1.2\|1082556\|33\|AP019189\|PILER-CR,CRT	1082556-1082588	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755172-755204	8	0.758
AP019189_1	1.7\|1082558\|31\|AP019189\|CRISPRCasFinder	1082558-1082588	31	NZ_CP007070	Rhizobium leguminosarum bv. trifolii CB782 plasmid unnamed, complete sequence	191920-191950	8	0.742
AP019189_1	1.9\|1082680\|31\|AP019189\|CRISPRCasFinder	1082680-1082710	31	NZ_CP033579	Vibrio mediterranei strain 117-T6 plasmid unnamed, complete sequence	47369-47399	8	0.742
AP019189_2	2.4\|1109340\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109340-1109371	32	MK113951	Phage 5P_3, complete genome	11967-11998	8	0.75
AP019189_2	2.4\|1109340\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109340-1109371	32	AP017924	Ralstonia phage RP12 DNA, complete genome	11643-11674	8	0.75
AP019189_2	2.10\|1109706\|32\|AP019189\|CRISPRCasFinder,CRT	1109706-1109737	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
AP019189_1	1.6\|1082497\|31\|AP019189\|CRISPRCasFinder	1082497-1082527	31	MF158039	Shigella phage Sf12, complete genome	4976-5006	9	0.71
AP019189_1	1.6\|1082497\|31\|AP019189\|CRISPRCasFinder	1082497-1082527	31	MF158042	Shigella phage Sd1, complete genome	939-969	9	0.71
AP019189_2	2.5\|1109401\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109401-1109432	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	1143591-1143622	9	0.719
AP019189_2	2.5\|1109401\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109401-1109432	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	891493-891524	9	0.719
AP019189_2	2.5\|1109401\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109401-1109432	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	1143594-1143625	9	0.719
AP019189_2	2.5\|1109401\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109401-1109432	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	315030-315061	9	0.719
AP019189_2	2.5\|1109401\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109401-1109432	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1123532-1123563	9	0.719
AP019189_1	1.6\|1082497\|31\|AP019189\|CRISPRCasFinder	1082497-1082527	31	MT840185	Bacteriophage sp. Joined_contig_19 genomic sequence	64310-64340	10	0.677
AP019189_1	1.6\|1082497\|31\|AP019189\|CRISPRCasFinder	1082497-1082527	31	KF356199	Microcystis phage MaMV-DC, complete genome	50157-50187	10	0.677
AP019189_1	1.6\|1082497\|31\|AP019189\|CRISPRCasFinder	1082497-1082527	31	NC_008562	Microcystis phage Ma-LMM01 DNA, complete genome	44744-44774	10	0.677
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	156123-156154	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	21888-21919	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_010935	Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence	28766-28797	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	JX469826	Uncultured bacterium plasmid pB12, complete sequence	11283-11314	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	JN106171	Uncultured bacterium plasmid pAKD26, complete sequence	11289-11320	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_016968	Comamonas testosteroni plasmid pTB30, complete sequence	11287-11318	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_016978	Comamonas testosteroni plasmid pI2, complete sequence	11272-11303	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NZ_CP017760	Cupriavidus necator strain NH9 plasmid pENH91, complete sequence	67078-67109	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NZ_CP053554	Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence	4235-4266	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_019263	Delftia acidovorans plasmid pLME1, complete sequence	11288-11319	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_019264	Delftia acidovorans plasmid pNB8c, complete sequence	11288-11319	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_019283	Delftia acidovorans plasmid pC1-1, complete sequence	11288-11319	10	0.688
AP019189_2	2.3\|1109279\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109279-1109310	32	NC_006830	Achromobacter xylosoxidans A8 plasmid pA81, complete sequence	11350-11381	10	0.688
AP019189_2	2.4\|1109340\|32\|AP019189\|PILER-CR,CRISPRCasFinder,CRT	1109340-1109371	32	NC_002580	Propionibacterium freudenreichii plasmid p545, complete sequence	2898-2929	10	0.688
AP019189_8	8.1\|3559096\|59\|AP019189\|CRISPRCasFinder	3559096-3559154	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
AP019189_1	1.1\|1082495\|33\|AP019189\|PILER-CR,CRT	1082495-1082527	33	MF158039	Shigella phage Sf12, complete genome	4974-5006	11	0.667
AP019189_1	1.1\|1082495\|33\|AP019189\|PILER-CR,CRT	1082495-1082527	33	MF158042	Shigella phage Sd1, complete genome	937-969	11	0.667
AP019189_8	8.1\|3559096\|59\|AP019189\|CRISPRCasFinder	3559096-3559154	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 5.1|2907323|40|AP019189|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 4.1|2239653|38|AP019189|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.4|1109340|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_021229 (Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919) position: , mismatch: 5, identity: 0.844

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgccca	Protospacer
 *.*** * ** ******** ************

4. spacer 1.7|1082558|31|AP019189|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.806

cgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
cgtggtcgtgggtgctgctgttgctggagcg	Protospacer
*******.**************** *.. *.

5. spacer 1.7|1082558|31|AP019189|CRISPRCasFinder matches to MH067970 (Arthrobacter sp. strain ANT_H40 plasmid pA40H1, complete sequence) position: , mismatch: 6, identity: 0.806

cgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
cgtggtcaagggtgctgctgttcccacgcct	Protospacer
******** ************* * . ***

6. spacer 2.4|1109340|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 6, identity: 0.812

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgcccc	Protospacer
 *.*** * ** ******** ***********

7. spacer 1.10|1082741|31|AP019189|CRISPRCasFinder matches to MG945629 (UNVERIFIED: Microviridae sp. isolate 6200-1602, complete genome) position: , mismatch: 7, identity: 0.774

agcctgacgagactactgaggccgttctgtc	CRISPR spacer
aaaaggccaagactactgaggccgttcagtc	Protospacer
*.   * *.****************** ***

8. spacer 1.10|1082741|31|AP019189|CRISPRCasFinder matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 7, identity: 0.774

agcctgacgagactactgaggccgttctgtc-	CRISPR spacer
agcctgacgaggctactggggcca-gcggtgg	Protospacer
***********.******.****.  * **

9. spacer 2.5|1109401|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to MK416018 (Klebsiella phage ST147-VIM1phi7.1, complete genome) position: , mismatch: 7, identity: 0.781

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
cccatcagcgcgttttttggcggtgtgatgga	Protospacer
****.************** *** *. **.*

10. spacer 2.6|1109462|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 7, identity: 0.781

ttgaactcaccacgattgttaatatggacgat	CRISPR spacer
aaggtatcaccacgattgttgatatgggcgat	Protospacer
  *.  **************.******.****

11. spacer 1.2|1082556|33|AP019189|PILER-CR,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

gacgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
tccgtggtcgtgggtgctgctgttgctggagcg	Protospacer
  *******.**************** *.. *.

12. spacer 1.7|1082558|31|AP019189|CRISPRCasFinder matches to NZ_CP007070 (Rhizobium leguminosarum bv. trifolii CB782 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
tgcggtcatggatgctgatgttgcagtgatg	Protospacer
.*.********.***** ******** * ..

13. spacer 1.9|1082680|31|AP019189|CRISPRCasFinder matches to NZ_CP033579 (Vibrio mediterranei strain 117-T6 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

atagcaatagtccatagatttgcgaaaacag	CRISPR spacer
aggtttgtagtccattgatttgcgaaaactg	Protospacer
* . . .******** ************* *

14. spacer 2.4|1109340|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to MK113951 (Phage 5P_3, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gagcatcggctggctgcaaggcaagctgcccc	Protospacer
  **   .******************.****

15. spacer 2.4|1109340|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gcggaagcgctggctgcacggcaagcggccca	Protospacer
 .*  .* ********** ******* *****

16. spacer 2.10|1109706|32|AP019189|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaacgacggtgagatttcacgcctgacgctg	CRISPR spacer
tcaacgacggtaagatgtcacgcctaaagaat	Protospacer
 **********.**** ********.* *

17. spacer 1.6|1082497|31|AP019189|CRISPRCasFinder matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 9, identity: 0.71

tgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
tgtttgcagcattaacgctccccaagtgccg	Protospacer
*******.************ ***.   ..

18. spacer 1.6|1082497|31|AP019189|CRISPRCasFinder matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 9, identity: 0.71

tgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
tgtttgcagcattaacgctctccaagtgccg	Protospacer
*******.************ ***.   ..

19. spacer 2.5|1109401|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

20. spacer 2.5|1109401|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

21. spacer 2.5|1109401|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

22. spacer 2.5|1109401|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

23. spacer 2.5|1109401|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

24. spacer 1.6|1082497|31|AP019189|CRISPRCasFinder matches to MT840185 (Bacteriophage sp. Joined_contig_19 genomic sequence) position: , mismatch: 10, identity: 0.677

tgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
gtgcggcggcattaatgctcacaagtatggt	Protospacer
   . **********.****** *****  .

25. spacer 1.6|1082497|31|AP019189|CRISPRCasFinder matches to KF356199 (Microcystis phage MaMV-DC, complete genome) position: , mismatch: 10, identity: 0.677

tgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
gtgcggcggcattaatgctcacaagtatggt	Protospacer
   . **********.****** *****  .

26. spacer 1.6|1082497|31|AP019189|CRISPRCasFinder matches to NC_008562 (Microcystis phage Ma-LMM01 DNA, complete genome) position: , mismatch: 10, identity: 0.677

tgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
gtgcggcggcattaatgctcacaagtatggt	Protospacer
   . **********.****** *****  .

27. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
acgtcaccccggaagcgattgccagcacacgc	Protospacer
.  ********.*** **********  .* .

28. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

29. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_010935 (Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

30. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to JX469826 (Uncultured bacterium plasmid pB12, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

31. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to JN106171 (Uncultured bacterium plasmid pAKD26, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

32. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_016968 (Comamonas testosteroni plasmid pTB30, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

33. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_016978 (Comamonas testosteroni plasmid pI2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

34. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017760 (Cupriavidus necator strain NH9 plasmid pENH91, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

35. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053554 (Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

36. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_019263 (Delftia acidovorans plasmid pLME1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

37. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_019264 (Delftia acidovorans plasmid pNB8c, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

38. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_019283 (Delftia acidovorans plasmid pC1-1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

39. spacer 2.3|1109279|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_006830 (Achromobacter xylosoxidans A8 plasmid pA81, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

40. spacer 2.4|1109340|32|AP019189|PILER-CR,CRISPRCasFinder,CRT matches to NC_002580 (Propionibacterium freudenreichii plasmid p545, complete sequence) position: , mismatch: 10, identity: 0.688

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
ccctgagagctggctgccacgcaagccgctgg	Protospacer
*. . .*********** * *********. .

41. spacer 8.1|3559096|59|AP019189|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

42. spacer 1.1|1082495|33|AP019189|PILER-CR,CRT matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
attgtttgcagcattaacgctccccaagtgccg	Protospacer
  *******.************ ***.   ..

43. spacer 1.1|1082495|33|AP019189|PILER-CR,CRT matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
attgtttgcagcattaacgctctccaagtgccg	Protospacer
  *******.************ ***.   ..

44. spacer 8.1|3559096|59|AP019189|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449710 : 516878

uncultured_Mediterranean_phage(15.38%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG76226.1\|449710_450658_-\|tRNA	L-methionyl-tRNA(fMet) N-formyltransferase	E3SNR5	Prochlorococcus_phage	1.4e-06	35.7
BBG76227.1\|450672_451182_-	peptide deformylase	E3SLL2	Synechococcus_phage	3.0e-19	41.9
BBG76228.1\|451311_452436_+	hypothetical protein	NA	NA	NA	NA
BBG76229.1\|452407_452881_+	hypothetical protein	NA	NA	NA	NA
BBG76230.1\|453125_453362_-	hypothetical protein	NA	NA	NA	NA
BBG76231.1\|453456_454029_+\|tRNA	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein	NA	NA	NA	NA
BBG76232.1\|454033_454852_+	dehydroshikimate reductase NAD(P)-binding	NA	NA	NA	NA
BBG76233.1\|454848_455106_+	hypothetical protein	NA	NA	NA	NA
BBG76234.1\|455081_455636_-	hypothetical protein	NA	NA	NA	NA
BBG76235.1\|461677_462436_-	amino acid ABC transporter ATPase	G3M9Y6	Bacillus_virus	9.1e-20	30.8
BBG76236.1\|462443_463547_-	amino acid ABC transporter permease	NA	NA	NA	NA
BBG76237.1\|463556_464756_-	amino acid ABC transporter permease	NA	NA	NA	NA
BBG76238.1\|464805_465831_-	periplasmic binding transport protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.8e-71	39.8
BBG76239.1\|466261_466483_-	outer membrane protein	NA	NA	NA	NA
BBG76240.1\|466735_469840_-	multidrug efflux system protein	NA	NA	NA	NA
BBG76241.1\|469851_470754_-	multidrug transporter	NA	NA	NA	NA
BBG76242.1\|470870_471839_-\|transposase	IS4 transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.4
BBG76243.1\|472020_472905_-	DNA adenine methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	1.9e-24	30.2
BBG76244.1\|472990_473287_-	global DNA-binding transcriptional dual regulator	NA	NA	NA	NA
BBG76245.1\|473312_474185_-\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
BBG76246.1\|474606_475488_-	methyltransferase for 50S ribosomal subunit protein L11	NA	NA	NA	NA
BBG76247.1\|475499_476951_-	sodium/pantothenate symporter	NA	NA	NA	NA
BBG76248.1\|476940_477183_-	inner membrane protein	NA	NA	NA	NA
BBG76249.1\|477291_478641_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
BBG76250.1\|478651_479122_-	acetyl CoA carboxylase	NA	NA	NA	NA
BBG76251.1\|479094_479283_-	hypothetical protein	NA	NA	NA	NA
BBG76252.1\|480099_481074_-	acryloyl-CoA reductase	NA	NA	NA	NA
BBG76253.1\|481225_483166_+	regulatory protein CsrD	NA	NA	NA	NA
BBG76254.1\|483470_484514_+	cell wall structural complex MreBCD actin-like component MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
BBG76255.1\|484579_485683_+	cell wall structural complex MreBCD transmembrane component MreC	NA	NA	NA	NA
BBG76256.1\|485682_486171_+	cell wall structural complex MreBCD transmembrane component MreD	NA	NA	NA	NA
BBG76257.1\|486179_486773_+	septum formation inhibitor	NA	NA	NA	NA
BBG76258.1\|486762_488232_+	ribonuclease G	NA	NA	NA	NA
BBG76259.1\|488299_492100_+	hypothetical protein	NA	NA	NA	NA
BBG76260.1\|492529_493975_+\|protease	protease TldD	NA	NA	NA	NA
BBG76261.1\|494108_495038_-	transcriptional regulator	NA	NA	NA	NA
BBG76262.1\|495151_495424_+	hypothetical protein	NA	NA	NA	NA
BBG76263.1\|495431_496364_+	p-hydroxybenzoic acid efflux system component	NA	NA	NA	NA
BBG76264.1\|496369_498337_+	p-hydroxybenzoic acid efflux system component	NA	NA	NA	NA
BBG76265.1\|498428_498701_+	barnase inhibitor	NA	NA	NA	NA
BBG76266.1\|498756_499071_-	cadmium and peroxide resistance protein	NA	NA	NA	NA
BBG76267.1\|499384_499855_-	l-arginine-responsive arginine metabolism regulon transcriptional regulator	NA	NA	NA	NA
BBG76268.1\|500289_501228_+	malate dehydrogenase	NA	NA	NA	NA
BBG76269.1\|501290_502358_-\|protease	serine endoprotease	A0A1S5Y2X3	uncultured_archaeal_virus	6.8e-05	24.2
BBG76270.1\|502447_503815_-\|protease	serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-21	25.6
BBG76271.1\|503968_504367_-	inner membrane-anchored protein	NA	NA	NA	NA
BBG76272.1\|504716_505688_+	cell division protein ZapE	NA	NA	NA	NA
BBG76273.1\|505906_506335_+	50S ribosomal subunit protein L13	NA	NA	NA	NA
BBG76274.1\|506350_506743_+	30S ribosomal subunit protein S9	NA	NA	NA	NA
BBG76275.1\|507137_507776_+	stringent starvation protein A	NA	NA	NA	NA
BBG76276.1\|507781_508279_+\|protease	ClpXP protease specificity enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.3e-26	42.9
BBG76277.1\|508321_509689_-	transporter	NA	NA	NA	NA
BBG76278.1\|510077_510860_+	sialic acid-inducible nan operon repressor	NA	NA	NA	NA
BBG76279.1\|510981_511875_+	N-acetylneuraminate lyase	NA	NA	NA	NA
BBG76280.1\|511983_513474_+	sialic acid transporter	Q6JIH2	Burkholderia_virus	4.9e-09	23.6
BBG76281.1\|513521_514211_+	N-acetylmannosamine-6-P epimerase	NA	NA	NA	NA
BBG76282.1\|514207_515083_+	N-acetylmannosamine kinase	NA	NA	NA	NA
BBG76283.1\|515079_515544_+	hypothetical protein	NA	NA	NA	NA
BBG76284.1\|515603_516152_-	hypothetical protein	A0A0U2BZN7	Salmonella_phage	2.3e-73	88.5
BBG76285.1\|516551_516878_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	2.4e-54	97.2

DBSCAN-SWA_2

583573 : 638060

Escherichia_phage(30.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG76348.1\|583573_584452_-\|protease	protease	NA	NA	NA	NA
BBG76349.1\|584460_585456_-\|protease	protease	NA	NA	NA	NA
BBG76350.1\|585664_586189_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA
BBG76351.1\|586182_586686_+	acetyltransferase	NA	NA	NA	NA
BBG76352.1\|586672_586975_-	GIY-YIG nuclease	F2NZ06	Diadromus_pulchellus_ascovirus	7.8e-15	53.8
BBG76353.1\|587025_587469_+	hypothetical protein	NA	NA	NA	NA
BBG76354.1\|587448_587967_-	general stress protein	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	4.4e-10	27.0
BBG76355.1\|588094_588730_+	nucleoside-diphosphate-sugar epimerase	NA	NA	NA	NA
BBG76356.1\|588802_589843_+	inner membrane permease	NA	NA	NA	NA
BBG76357.1\|589956_590532_-	outer membrane lipoprotein	NA	NA	NA	NA
BBG76358.1\|590541_591132_-	DnaA initiator-associating factor for replication initiation	A0A067XQR2	Caulobacter_phage	5.4e-12	31.1
BBG76359.1\|591151_591547_-	hypothetical protein	NA	NA	NA	NA
BBG76360.1\|591504_593541_-	OM lipoprotein stimulator of MrcA transpeptidase	NA	NA	NA	NA
BBG76361.1\|593605_594466_+	ribosomal RNA small subunit methyltransferase I	M1PLC5	Streptococcus_phage	9.5e-50	43.6
BBG76362.1\|594508_595600_-	fimbrial-like adhesin protein	NA	NA	NA	NA
BBG76363.1\|595610_598052_-	outer membrane usher protein FimD	NA	NA	NA	NA
BBG76364.1\|598155_598830_-	periplasmic pilin chaperone	NA	NA	NA	NA
BBG76365.1\|598930_599515_-	fimbrial-like adhesin protein	NA	NA	NA	NA
BBG76366.1\|599915_600617_-	galactosamine-6-phosphate isomerase	NA	NA	NA	NA
BBG76367.1\|600671_601463_-	N-acetylgalactosamine-specific enzyme IID component of PTS	NA	NA	NA	NA
BBG76368.1\|601452_602082_-	N-acetylgalactosamine-specific enzyme IIC component of PTS	NA	NA	NA	NA
BBG76369.1\|602220_602496_+\|transposase	transposase	Q71TE9	Escherichia_phage	7.7e-46	97.8
BBG76370.1\|602540_602918_+\|transposase	IS1 family transposase InsB	Q71TF0	Escherichia_phage	1.3e-67	100.0
BBG76371.1\|603071_603548_-	N-acetylgalactosamine-specific enzyme IIB component of PTS	NA	NA	NA	NA
BBG76372.1\|603714_604575_-	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA
BBG76373.1\|604587_605742_-	tagatose-6-phosphate ketose isomerase	NA	NA	NA	NA
BBG76374.1\|606092_607226_-	N-acetylgalactosamine-6-phosphate deacetylase	NA	NA	NA	NA
BBG76375.1\|607222_607657_-	N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component	NA	NA	NA	NA
BBG76376.1\|607674_608553_-	N-acetylgalactosamine-specific PTS system enzyme IID component	NA	NA	NA	NA
BBG76377.1\|608542_609322_-	N-acetylgalactosamine-specific enzyme IIC component of PTS	NA	NA	NA	NA
BBG76378.1\|609332_609806_-	N-acetylgalactosamine-specific enzyme IIB component of PTS	NA	NA	NA	NA
BBG76379.1\|609828_611109_-	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA
BBG76380.1\|611357_612167_+	transcriptional repressor of the aga regulon	NA	NA	NA	NA
BBG76381.1\|612221_612686_-	toxin of the SohB(PrlF)-YhaV toxin-antitoxin system	NA	NA	NA	NA
BBG76382.1\|612685_613021_-	antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system	NA	NA	NA	NA
BBG76383.1\|613169_614741_-	D-galactarate dehydrogenase	NA	NA	NA	NA
BBG76384.1\|615115_616450_+	(D)-galactarate transporter	NA	NA	NA	NA
BBG76385.1\|616465_617236_+	alpha-dehydro-beta-deoxy-D-glucarate aldolase	NA	NA	NA	NA
BBG76386.1\|617256_618156_+	tartronate semialdehyde reductase	NA	NA	NA	NA
BBG76387.1\|618252_619398_+	glycerate kinase I	W6LM47	Streptococcus_phage	1.7e-49	41.3
BBG76388.1\|620420_621608_-	hypothetical protein	NA	NA	NA	NA
BBG76389.1\|621629_622169_-	hypothetical protein	NA	NA	NA	NA
BBG76390.1\|622957_623896_+	tdc operon transcriptional activator	NA	NA	NA	NA
BBG76391.1\|623994_624984_+	L-threonine dehydratase	NA	NA	NA	NA
BBG76392.1\|625005_626337_+	L-threonine/L-serine transporter	NA	NA	NA	NA
BBG76393.1\|626362_627571_+	propionate kinase/acetate kinase C	NA	NA	NA	NA
BBG76394.1\|627604_629899_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	7.4e-158	41.0
BBG76395.1\|629912_630302_+	reactive intermediate deaminase	NA	NA	NA	NA
BBG76396.1\|630373_631738_+	L-serine dehydratase 3	NA	NA	NA	NA
BBG76397.1\|632012_633344_+	transporter	NA	NA	NA	NA
BBG76398.1\|633371_634682_+	L-serine dehydratase alpha chain	NA	NA	NA	NA
BBG76399.1\|634815_634980_-	hypothetical protein	NA	NA	NA	NA
BBG76400.1\|635002_635704_-	redox-sensitive bicupin	NA	NA	NA	NA
BBG76401.1\|635808_636705_+	LysR family transcriptional regulator	NA	NA	NA	NA
BBG76402.1\|636755_637112_-	inner membrane protein	NA	NA	NA	NA
BBG76403.1\|637362_637638_+\|transposase	IS1 family transposase InsA	Q71TE9	Escherichia_phage	2.9e-45	95.6
BBG76404.1\|637766_638060_+\|transposase	IS1 family transposase InsB	U5P0U6	Shigella_phage	2.7e-44	90.7

DBSCAN-SWA_3

1117192 : 1130375

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG76857.1\|1117192_1117954_+	broad specificity 5'(3')-nucleotidase and polyphosphatase	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
BBG76858.1\|1117947_1118574_+	L-isoaspartate protein carboxylmethyltransferase type II	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
BBG76859.1\|1118713_1119853_+	lipoprotein	D7RWE0	Brochothrix_phage	1.7e-06	35.6
BBG76860.1\|1119915_1120908_+	RNA polymerase sigma S factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
BBG76861.1\|1121001_1122366_-	transporter	NA	NA	NA	NA
BBG76862.1\|1122454_1123231_-	hydroxypyruvate isomerase	NA	NA	NA	NA
BBG76863.1\|1123235_1123874_-	class II aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
BBG76864.1\|1123870_1125133_-	hypothetical protein	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
BBG76865.1\|1125129_1126038_-	dehydrogenase	A0A077SLF7	Escherichia_phage	5.1e-118	76.5
BBG76866.1\|1126233_1127001_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	56.3
BBG76867.1\|1127051_1127708_-	serine/threonine-specific protein phosphatase 2	A0A222YWF0	Escherichia_phage	6.2e-49	46.3
BBG76868.1\|1127813_1130375_-	methyl-directed mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6

DBSCAN-SWA_4

1733256 : 1742699

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG77409.1\|1733256_1734183_+	transporter subunit: ATP-binding component of ABC superfamily	G3M9Y6	Bacillus_virus	1.3e-23	30.8
BBG77410.1\|1734187_1734919_+	ABC transporter permease	NA	NA	NA	NA
BBG77411.1\|1735066_1735798_-	transcriptional activator of csgD and csgBA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
BBG77412.1\|1736004_1737705_+	histidine kinase	B6DZC2	Enterobacteria_phage	2.4e-307	99.5
BBG77413.1\|1737701_1738421_+	two-component regulatory system response regulator YehT	NA	NA	NA	NA
BBG77414.1\|1738467_1738938_+	hypothetical protein	Q9EYF4	Enterobacteria_phage	5.2e-82	99.4
BBG77415.1\|1738979_1739441_-	lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
BBG77416.1\|1739565_1741566_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
BBG77417.1\|1741562_1742699_-	VMA domain YehL ATPase stimulator	Q9EYF7	Enterobacteria_phage	5.0e-163	97.4

DBSCAN-SWA_5

1808839 : 1847728

Bacillus_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG77468.1\|1808839_1810036_+\|transposase	transposase	NA	NA	NA	NA
BBG77469.1\|1810030_1810480_-	hypothetical protein	NA	NA	NA	NA
BBG77470.1\|1810797_1811439_+	uridine/cytidine kinase	A0A1V0SAA3	Catovirus	3.2e-34	36.9
BBG77471.1\|1811530_1812112_+	deoxycytidine triphosphate deaminase dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.3e-31	42.1
BBG77472.1\|1812133_1813987_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
BBG77473.1\|1814438_1817129_-	hypothetical protein	A0A0R6PEZ3	Moraxella_phage	5.5e-35	43.5
BBG77474.1\|1817781_1817979_+	hypothetical protein	NA	NA	NA	NA
BBG77475.1\|1817881_1818772_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	9.6e-45	40.3
BBG77476.1\|1819047_1819866_-\|transposase	IS600 transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-63	44.1
BBG77477.1\|1819950_1820217_-	hypothetical protein	Q9MBM9	Staphylococcus_prophage	3.6e-16	56.1
BBG77478.1\|1821058_1821427_-\|transposase	transposase	NA	NA	NA	NA
BBG77479.1\|1821962_1822283_-\|transposase	IS602 transposase	NA	NA	NA	NA
BBG77480.1\|1822863_1824297_+	membrane protein	NA	NA	NA	NA
BBG77481.1\|1824442_1825576_+	O-antigen capsule outer membrane auxiliary protein export channel	NA	NA	NA	NA
BBG77482.1\|1825582_1826014_+	O-antigen capsule forming protein-tyrosine-phosphatase	NA	NA	NA	NA
BBG77483.1\|1826032_1828204_+	colanic acid production tyrosine-protein kinase	NA	NA	NA	NA
BBG77484.1\|1828218_1828722_-\|transposase	IS1 family transposase InsB	U5P0U6	Shigella_phage	3.7e-94	99.4
BBG77485.1\|1829063_1830014_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
BBG77486.1\|1830017_1831184_+	hypothetical protein	NA	NA	NA	NA
BBG77487.1\|1831194_1832349_+	glycosyl transferase	NA	NA	NA	NA
BBG77488.1\|1832335_1833598_+	hypothetical protein	NA	NA	NA	NA
BBG77489.1\|1833597_1834686_+	glycosyltransferase group 1 protein	NA	NA	NA	NA
BBG77490.1\|1834697_1835867_+	glycosyl transferase	NA	NA	NA	NA
BBG77491.1\|1835876_1836644_+	hypothetical protein	NA	NA	NA	NA
BBG77492.1\|1836679_1838413_+	hypothetical protein	A0A0A8J9B0	Klebsiella_phage	7.6e-54	33.0
BBG77493.1\|1838420_1839374_+	acyltransferase/acetyltransferase	NA	NA	NA	NA
BBG77494.1\|1839592_1840990_+	colanic biosynthesis UDP-glucose lipid carrier transferase	NA	NA	NA	NA
BBG77495.1\|1841156_1842563_+	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	8.0e-38	28.7
BBG77496.1\|1842790_1844206_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	5.8e-52	30.6
BBG77497.1\|1844228_1845599_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	9.3e-31	25.6
BBG77498.1\|1845762_1846929_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.8e-112	53.7
BBG77499.1\|1847030_1847306_+\|transposase	transposase	Q71TE9	Escherichia_phage	2.0e-46	98.9
BBG77500.1\|1847350_1847728_+	hypothetical protein	U5P0U6	Shigella_phage	1.3e-67	100.0

DBSCAN-SWA_6

1864687 : 1893592

Stx2-converting_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG77519.1\|1864687_1865908_-\|transposase	transposase	NA	NA	NA	NA
BBG77520.1\|1866003_1866477_+	DNA gyrase inhibitor	NA	NA	NA	NA
BBG77521.1\|1866674_1867733_+	transporter	NA	NA	NA	NA
BBG77522.1\|1867904_1868234_+	hypothetical protein	NA	NA	NA	NA
BBG77523.1\|1868334_1868601_-	hypothetical protein	NA	NA	NA	NA
BBG77524.1\|1869301_1869442_-	hypothetical protein	NA	NA	NA	NA
BBG77525.1\|1869853_1870258_+	hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
BBG77526.1\|1870254_1870602_+\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
BBG77527.1\|1870650_1872186_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-289	99.4
BBG77528.1\|1872945_1873323_-	hypothetical protein	NA	NA	NA	NA
BBG77529.1\|1873412_1873781_-	hypothetical protein	NA	NA	NA	NA
BBG77530.1\|1873943_1874165_-	hypothetical protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
BBG77531.1\|1874227_1874704_-	DNA repair protein	NA	NA	NA	NA
BBG77532.1\|1874719_1875193_-	hypothetical protein	A9J566	Pseudomonas_phage	1.5e-12	30.3
BBG77533.1\|1875534_1876353_-	hypothetical protein	A0A2C9CX26	Yersinia_phage	4.2e-47	40.1
BBG77534.1\|1876507_1876666_-	hypothetical protein	NA	NA	NA	NA
BBG77535.1\|1876736_1879523_-	AidA-I family adhesin	NA	NA	NA	NA
BBG77536.1\|1879746_1881288_+\|transposase	transposase	K4I413	Acidithiobacillus_phage	1.3e-129	46.4
BBG77537.1\|1881299_1882049_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
BBG77538.1\|1882540_1883413_-	GTP-binding protein	NA	NA	NA	NA
BBG77539.1\|1883497_1884415_-	hypothetical protein	NA	NA	NA	NA
BBG77540.1\|1885614_1886217_-	hypothetical protein	NA	NA	NA	NA
BBG77541.1\|1886311_1886518_-	Rha family transcriptional regulator	NA	NA	NA	NA
BBG77542.1\|1886658_1886925_+	hypothetical protein	NA	NA	NA	NA
BBG77543.1\|1887261_1887402_+	haemolysin expression modulating protein	NA	NA	NA	NA
BBG77544.1\|1888146_1888716_+	hypothetical protein	NA	NA	NA	NA
BBG77545.1\|1888881_1889274_+	hypothetical protein	NA	NA	NA	NA
BBG77546.1\|1889283_1889706_-	hypothetical protein	NA	NA	NA	NA
BBG77547.1\|1889772_1890252_-	hypothetical protein	NA	NA	NA	NA
BBG77548.1\|1890436_1890841_+	hypothetical protein	NA	NA	NA	NA
BBG77549.1\|1891857_1892208_+\|transposase	transposase	NA	NA	NA	NA
BBG77550.1\|1892127_1892394_-	hypothetical protein	Q9MBM9	Staphylococcus_prophage	6.2e-16	56.1
BBG77551.1\|1893235_1893592_-\|transposase	putative transposase YkgN	U5P4I9	Shigella_phage	4.4e-33	92.5

DBSCAN-SWA_7

2735048 : 2791135

Escherichia_phage(42.86%)

terminase,lysis,tail,integrase,head,transposase,tRNA,portal

attL 2743285:2743299|attR 2791237:2791251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG78347.1\|2735048_2736200_+\|tRNA	tRNA(Gln,Lys,Glu) U34 2-thiouridylase	NA	NA	NA	NA
BBG78348.1\|2736235_2736877_+	lysogenization regulator	NA	NA	NA	NA
BBG78349.1\|2736880_2738251_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
BBG78350.1\|2738419_2739091_+	two-component regulatory system response regulator PhoP	NA	NA	NA	NA
BBG78351.1\|2739090_2740551_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
BBG78352.1\|2740626_2741748_+	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA
BBG78353.1\|2741796_2743023_-	peptidase T	NA	NA	NA	NA
BBG78354.1\|2743078_2743294_+	hypothetical protein	NA	NA	NA	NA
2743285:2743299	attL	NA	NA	NA	NA
BBG78355.1\|2743290_2744409_+	spermidine/putrescine ABC transporter ATPase	Q6GZ03	Mycoplasma_phage	5.4e-29	39.8
BBG78356.1\|2744392_2745256_+	spermidine/putrescine ABC transporter permease	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
BBG78357.1\|2745822_2746479_+	hypothetical protein	NA	NA	NA	NA
BBG78358.1\|2746716_2746968_-	hypothetical protein	A0A2D1UII2	Escherichia_phage	2.3e-36	96.4
BBG78359.1\|2747248_2747575_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	2.4e-54	97.2
BBG78360.1\|2747574_2748054_+\|transposase	transposase	Q6H9S3	Enterobacteria_phage	1.4e-74	100.0
BBG78361.1\|2748660_2750169_+	reverse transcriptase-like protein	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
BBG78362.1\|2750360_2750732_+\|transposase	IS629 transposase	Q6H9S3	Enterobacteria_phage	1.6e-65	99.2
BBG78363.1\|2750734_2754058_-	hypothetical protein	A0A2D1UII2	Escherichia_phage	0.0e+00	87.5
BBG78364.1\|2754122_2754722_-	outer membrane precursor Lom	H6WZM8	Escherichia_phage	1.6e-107	95.0
BBG78365.1\|2754789_2758269_-	phage host specificity protein	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
BBG78366.1\|2758329_2758977_-\|tail	phage tail assembly protein	A5LH42	Enterobacteria_phage	2.6e-108	94.4
BBG78367.1\|2758874_2759510_-\|tail	phage tail assembly protein	K7PLW1	Enterobacteria_phage	5.5e-127	97.2
BBG78368.1\|2759623_2760322_-\|tail	phage minor tail protein	A0A1B5FP81	Escherichia_phage	3.4e-130	97.0
BBG78369.1\|2760321_2760663_-\|tail	phage minor tail protein	A0A0P0ZDL9	Stx2-converting_phage	1.2e-40	66.4
BBG78370.1\|2760655_2763883_-\|tail	phage tail length tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.0
BBG78371.1\|2763929_2764220_-\|tail	phage minor tail protein	A0A1B5FP87	Escherichia_phage	7.2e-42	95.7
BBG78372.1\|2764231_2764603_-\|tail	phage minor tail protein	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
BBG78373.1\|2764617_2765322_-\|tail	phage major tail subunit	A0A1B5FP82	Escherichia_phage	1.4e-112	92.7
BBG78374.1\|2765382_2765727_-\|tail	phage minor tail protein	A0A1B5FP84	Escherichia_phage	5.1e-55	96.5
BBG78375.1\|2765723_2766170_-\|tail	phage minor tail protein	S4TR46	Salmonella_phage	2.3e-63	81.1
BBG78376.1\|2766169_2766508_-\|head,tail	phage head-tail adaptor	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
BBG78377.1\|2766516_2766834_-	phage DNA packaging protein	A0A1W6JNZ5	Morganella_phage	5.3e-22	49.5
BBG78378.1\|2766910_2768128_-\|head	major head protein	A0A1W6JP20	Morganella_phage	5.9e-162	71.6
BBG78379.1\|2768142_2768559_-	hypothetical protein	Q8SBH9	Shigella_phage	7.6e-61	83.3
BBG78380.1\|2768733_2769960_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.7e-204	83.3
BBG78381.1\|2770107_2771865_-\|terminase	phage terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
BBG78382.1\|2771864_2772347_-\|terminase	phage terminase small subunit	A0A1B5FPA0	Escherichia_phage	8.7e-85	98.1
BBG78383.1\|2772724_2772874_-	hypothetical protein	NA	NA	NA	NA
BBG78384.1\|2773370_2773664_+	Bor protein precursor	K7PL54	Enterobacteria_phage	5.9e-44	90.7
BBG78385.1\|2773695_2774157_-	phage murein endopeptidase	A0A0K2FJD0	Enterobacteria_phage	9.6e-65	87.6
BBG78386.1\|2774153_2774687_-	phage endolysin	Q08J98	Stx2-converting_phage	1.5e-98	93.2
BBG78387.1\|2774750_2775101_-	hypothetical protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
BBG78388.1\|2775105_2775321_-\|lysis	phage lysis protein	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
BBG78389.1\|2775470_2775632_-	hypothetical protein	Q08JA2	Stx2-converting_phage	5.9e-14	87.0
BBG78390.1\|2775628_2775832_-	hypothetical protein	H6WZJ9	Escherichia_phage	7.7e-27	95.2
BBG78391.1\|2776077_2776413_+	RpoS stabilzer during Mg starvation	Q8HAJ1	Enterobacteria_phage	1.4e-44	74.8
BBG78392.1\|2777665_2778487_-	phage antitermination protein Q	K7P7B9	Enterobacteria_phage	5.1e-77	58.2
BBG78393.1\|2778483_2778864_-	phage endonuclease RUS	V5URS4	Shigella_phage	1.3e-35	63.6
BBG78394.1\|2778864_2779923_-	hypothetical protein	A0A291AWV9	Escherichia_phage	7.5e-89	48.0
BBG78395.1\|2780370_2780526_-	small toxic polypeptide	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
BBG78396.1\|2781448_2781625_-	hypothetical protein	A0A2R2X2A8	Escherichia_phage	6.7e-27	94.8
BBG78397.1\|2781617_2781800_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
BBG78398.1\|2781893_2782250_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
BBG78399.1\|2782307_2782730_-	phage exclusion protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
BBG78400.1\|2782770_2783841_-	phage replication protein	A0A088CD36	Shigella_phage	2.6e-52	56.6
BBG78401.1\|2783912_2784338_-	hypothetical protein	NA	NA	NA	NA
BBG78402.1\|2784321_2784564_-	phage antirepressor protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
BBG78403.1\|2784655_2785294_+	phage repressor protein	H9C160	Pectobacterium_phage	8.7e-16	26.7
BBG78404.1\|2785647_2785947_+	hypothetical protein	NA	NA	NA	NA
BBG78405.1\|2786018_2786237_+	hypothetical protein	NA	NA	NA	NA
BBG78406.1\|2786805_2786994_+	hypothetical protein	NA	NA	NA	NA
BBG78407.1\|2786990_2787182_+	hypothetical protein	NA	NA	NA	NA
BBG78408.1\|2787275_2789717_+	exodeoxyribonuclease VIII	V5UQJ3	Shigella_phage	3.1e-114	46.9
BBG78409.1\|2789778_2790048_+	phage excisionase	NA	NA	NA	NA
BBG78410.1\|2790016_2791135_+\|integrase	integrase	Q77Z04	Phage_21	1.6e-84	44.4
2791237:2791251	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3364209 : 3386076

Macacine_betaherpesvirus(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG78933.1\|3364209_3365328_-\|transposase	IS186 transposase	NA	NA	NA	NA
BBG78934.1\|3365398_3365551_-	protein HokE	NA	NA	NA	NA
BBG78935.1\|3365648_3366500_-\|transposase	IS150 transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	7.8e-113	100.0
BBG78936.1\|3366496_3367018_-\|transposase	IS150 transposase A	A0A2I6AZV8	Macacine_betaherpesvirus	2.7e-92	100.0
BBG78937.1\|3367449_3368568_+	weak gamma-glutamyl:cysteine ligase	NA	NA	NA	NA
BBG78938.1\|3368705_3369410_+\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
BBG78939.1\|3369494_3369857_+	hypothetical protein	NA	NA	NA	NA
BBG78940.1\|3369942_3370434_-	hypothetical protein	NA	NA	NA	NA
BBG78941.1\|3370604_3370856_-	DNA-binding protein	A0A2I7S995	Vibrio_phage	8.1e-18	65.7
BBG78942.1\|3371150_3371279_-	hypothetical protein	NA	NA	NA	NA
BBG78943.1\|3371460_3372429_+\|transposase	IS4 transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.4
BBG78944.1\|3372646_3374728_-	hypothetical protein	A0A2K9L4U1	Tupanvirus	2.5e-19	27.7
BBG78945.1\|3374731_3375922_-	hypothetical protein	NA	NA	NA	NA
BBG78946.1\|3375969_3377124_-	glycosyl transferase wbdM	NA	NA	NA	NA
BBG78947.1\|3377133_3378213_-	glycosyl transferase	NA	NA	NA	NA
BBG78948.1\|3378230_3378983_-	lipopolysaccharide transport system ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-12	29.4
BBG78949.1\|3379765_3381982_-	hypothetical protein	NA	NA	NA	NA
BBG78950.1\|3382015_3383032_-	UDP-galactose-4-epimerase	A0A2K9L5H6	Tupanvirus	9.1e-84	47.6
BBG78951.1\|3383476_3384370_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.3e-45	40.3
BBG78952.1\|3384534_3385332_-	hypothetical protein	A0A291LBB9	Klebsiella_phage	7.8e-14	41.7
BBG78953.1\|3385371_3386076_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_9

3709174 : 3736669

Escherichia_phage(55.56%)

transposase,integrase,protease

attL 3726056:3726071|attR 3745700:3745715

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG79245.1\|3709174_3709525_-\|transposase	IS911 transposase	Q716C1	Shigella_phage	1.8e-39	98.9
BBG79246.1\|3709594_3709888_-	hypothetical protein	NA	NA	NA	NA
BBG79247.1\|3709976_3712847_-	PstII restriction-modification enzyme Res subunit	NA	NA	NA	NA
BBG79248.1\|3712849_3714478_-	adenine-specific DNA-methyltransferase	A0A0K1LNZ9	Escherichia_phage	2.3e-84	42.2
BBG79249.1\|3714487_3716758_-\|protease	serine protease	NA	NA	NA	NA
BBG79250.1\|3716884_3717865_-	AAA family ATPase	A0A1B2RW50	Lymphocystis_disease_virus	5.5e-17	30.2
BBG79251.1\|3717890_3720740_-	Helicase	A0A2H4J643	uncultured_Caudovirales_phage	2.9e-183	39.6
BBG79252.1\|3721016_3721211_+	hypothetical protein	NA	NA	NA	NA
BBG79253.1\|3721138_3721624_+	hypothetical protein	NA	NA	NA	NA
BBG79254.1\|3721745_3721931_-	hypothetical protein	NA	NA	NA	NA
BBG79255.1\|3722005_3722407_+	hypothetical protein	NA	NA	NA	NA
BBG79256.1\|3722394_3722829_+	hypothetical protein	NA	NA	NA	NA
BBG79257.1\|3723802_3724162_-\|transposase	IS1nuxi transposase	A0A0U2RK18	Escherichia_phage	4.5e-54	95.3
BBG79258.1\|3724188_3724461_-\|transposase	transposase	A0A0U2RK18	Escherichia_phage	4.6e-43	97.6
BBG79259.1\|3724713_3726183_+	arginine/agmatine antiporter	NA	NA	NA	NA
3726056:3726071	attL	NA	NA	NA	NA
BBG79260.1\|3726287_3728657_+	arginine decarboxylase	NA	NA	NA	NA
BBG79261.1\|3728731_3730231_+	arginine/agmatine antiporter	NA	NA	NA	NA
BBG79262.1\|3730373_3730649_+\|transposase	IS1 family transposase InsA	Q71TE9	Escherichia_phage	6.6e-45	93.4
BBG79263.1\|3730693_3730885_+	hypothetical protein	Q71TF0	Escherichia_phage	2.2e-23	83.6
BBG79264.1\|3731263_3732241_-	hypothetical protein	NA	NA	NA	NA
BBG79265.1\|3732311_3734018_-	hypothetical protein	NA	NA	NA	NA
BBG79266.1\|3734010_3735219_-	hypothetical protein	NA	NA	NA	NA
BBG79267.1\|3735460_3736669_-\|integrase	integrase	Q7M297	Enterobacteria_phage	7.7e-130	56.5
3745700:3745715	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4013692 : 4021631

Macacine_betaherpesvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG79506.1\|4013692_4014859_-	pH-dependent sodium/proton antiporter	A0A2H4J5W3	uncultured_Caudovirales_phage	7.5e-90	50.3
BBG79507.1\|4015421_4015943_+\|transposase	IS150 transposase A	A0A2I6AZV8	Macacine_betaherpesvirus	2.7e-92	100.0
BBG79508.1\|4015939_4016791_+\|transposase	IS150 transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	7.8e-113	100.0
BBG79509.1\|4016890_4017043_+	hypothetical protein	A0A0U2QV81	Escherichia_phage	1.6e-13	78.0
BBG79510.1\|4017114_4018233_+\|transposase	IS186 transposase	NA	NA	NA	NA
BBG79511.1\|4018495_4019626_-	chaperone Hsp40	E3T4P7	Cafeteria_roenbergensis_virus	3.6e-28	34.6
BBG79512.1\|4019714_4021631_-	chaperone Hsp70	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.9e-149	51.1

DBSCAN-SWA_11

4087464 : 4115520

Escherichia_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG79577.1\|4087464_4087674_-\|transposase	transposase	U5P0U6	Shigella_phage	4.4e-33	100.0
BBG79578.1\|4087885_4088110_-\|transposase	IS1 family transposase InsA	A0A2L1IV22	Escherichia_phage	1.2e-36	97.3
BBG79579.1\|4088475_4089708_+	multidrug efflux system protein	NA	NA	NA	NA
BBG79580.1\|4089748_4091029_+	zinc-type alcohol dehydrogenase-like protein	NA	NA	NA	NA
BBG79581.1\|4091144_4092296_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
BBG79582.1\|4092305_4093073_+	activator of (R)-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
BBG79583.1\|4093069_4093327_+	hypothetical protein	NA	NA	NA	NA
BBG79584.1\|4093391_4094252_+	hypothetical protein	NA	NA	NA	NA
BBG79585.1\|4094319_4095498_+	transport protein	NA	NA	NA	NA
BBG79586.1\|4095510_4096065_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	2.7e-37	45.6
BBG79587.1\|4096313_4096997_+	nucleoside recognition pore and gate family inner membrane transporter	NA	NA	NA	NA
BBG79588.1\|4096993_4097455_+	SpmB family inner membrane protein	NA	NA	NA	NA
BBG79589.1\|4097467_4098640_+	isoaspartyl dipeptidase	NA	NA	NA	NA
BBG79590.1\|4098704_4099616_+	hypochlorite-responsive transcription factor	NA	NA	NA	NA
BBG79591.1\|4099608_4099860_-	hypothetical protein	NA	NA	NA	NA
BBG79592.1\|4100783_4101362_+	hypothetical protein	NA	NA	NA	NA
BBG79593.1\|4101599_4102373_-	fructuronate-inducible hexuronate regulon transcriptional repressor	NA	NA	NA	NA
BBG79594.1\|4102587_4104048_-	NAD-dependent D-mannonate oxidoreductase	H8ZJP8	Ostreococcus_tauri_virus	1.4e-48	32.4
BBG79595.1\|4104128_4105313_-	mannonate hydrolase	NA	NA	NA	NA
BBG79596.1\|4105652_4106996_+	fructuronate transporter	NA	NA	NA	NA
BBG79597.1\|4107394_4107670_+\|transposase	transposase	Q71TE9	Escherichia_phage	1.7e-45	97.8
BBG79598.1\|4107714_4108092_+\|transposase	IS1 family transposase InsB	Q71TF0	Escherichia_phage	1.3e-67	100.0
BBG79599.1\|4109297_4110014_+	N-acetylneuraminic acid outer membrane channel protein	NA	NA	NA	NA
BBG79600.1\|4110033_4111140_+	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA
BBG79601.1\|4111756_4112185_+	hypothetical protein	Q9EYC8	Enterobacteria_phage	1.4e-25	46.7
BBG79602.1\|4112674_4112833_+	hypothetical protein	NA	NA	NA	NA
BBG79603.1\|4113145_4113313_+	hypothetical protein	NA	NA	NA	NA
BBG79604.1\|4113360_4113741_+	hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
BBG79605.1\|4113737_4114085_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	6.3e-61	99.1
BBG79606.1\|4114134_4115520_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	1.9e-257	89.1

DBSCAN-SWA_12

4118886 : 4170293

Enterobacteria_phage(23.08%)

integrase,capsid,transposase,tRNA,holin

attL 4150806:4150820|attR 4164278:4164292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG79610.1\|4118886_4119096_-\|transposase	transposase	U5P0U6	Shigella_phage	4.4e-33	100.0
BBG79611.1\|4119096_4119282_-	hypothetical protein	Q71TF0	Escherichia_phage	7.3e-24	85.2
BBG79612.1\|4119308_4119533_-\|transposase	IS1 family transposase InsA	A0A2L1IV22	Escherichia_phage	1.2e-36	97.3
BBG79613.1\|4119875_4120397_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
BBG79614.1\|4120393_4121347_+	anti-sigma transmembrane signal transducer for ferric citrate transport	NA	NA	NA	NA
BBG79615.1\|4121433_4123758_+	TonB-dependent outer membrane ferric citrate transporter and signal transducer	NA	NA	NA	NA
BBG79616.1\|4123802_4124705_+	ferric citrate ABC transporter periplasmic binding protein	NA	NA	NA	NA
BBG79617.1\|4124701_4125700_+	ferric citrate ABC transporter permease	NA	NA	NA	NA
BBG79618.1\|4125696_4126653_+	ferric citrate ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
BBG79619.1\|4126653_4127421_+	ferric citrate ABC transporter ATPase	G3M9Y6	Bacillus_virus	6.4e-13	24.8
BBG79620.1\|4127978_4128236_-	hypothetical protein	NA	NA	NA	NA
BBG79621.1\|4128886_4130395_-	reverse transcriptase-like protein	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
BBG79622.1\|4131001_4131481_-\|transposase	transposase	Q6H9S3	Enterobacteria_phage	1.4e-74	100.0
BBG79623.1\|4131480_4131807_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	2.4e-54	97.2
BBG79624.1\|4131981_4132275_+\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	5.2e-48	99.0
BBG79625.1\|4132325_4132544_-	TetR family transcriptional regulator	NA	NA	NA	NA
BBG79626.1\|4132610_4132910_+\|transposase	IS3 family transposase OrfA	NA	NA	NA	NA
BBG79627.1\|4132906_4133773_+\|transposase	IS3 family transposase OrfB	A0A0P0I4A4	Acinetobacter_phage	1.1e-50	40.2
BBG79628.1\|4134052_4135330_-	hypothetical protein	NA	NA	NA	NA
BBG79629.1\|4135392_4137396_-\|holin	choline transporter of high affinity	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
BBG79630.1\|4137543_4138683_-\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	3.5e-68	45.1
BBG79631.1\|4138863_4139517_-	hypothetical protein	NA	NA	NA	NA
BBG79632.1\|4139872_4140391_-	hypothetical protein	NA	NA	NA	NA
BBG79633.1\|4140827_4141340_-	hypothetical protein	NA	NA	NA	NA
BBG79634.1\|4141918_4142644_-	polysaccharide deacetylase Ecf1	NA	NA	NA	NA
BBG79635.1\|4142946_4143249_+\|transposase	IS911 transposase	Q716C1	Shigella_phage	1.2e-36	96.5
BBG79636.1\|4143466_4143730_+	hypothetical protein	Q716C2	Shigella_phage	4.2e-33	97.0
BBG79637.1\|4144336_4145845_+	reverse transcriptase-like protein	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
BBG79638.1\|4146036_4146408_+\|transposase	IS629 transposase	Q6H9S3	Enterobacteria_phage	1.6e-65	99.2
BBG79639.1\|4146638_4147190_-	hypothetical protein	B7SYF8	Stenotrophomonas_phage	2.3e-28	40.6
BBG79640.1\|4147249_4147552_-	hypothetical protein	Q7M297	Enterobacteria_phage	1.9e-21	50.5
BBG79641.1\|4148006_4148939_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	1.8e-25	29.4
BBG79642.1\|4148940_4149927_-	hypothetical protein	NA	NA	NA	NA
BBG79643.1\|4150554_4150827_-	transcription activator	A0A2I8TV89	Erwinia_phage	6.3e-08	44.9
4150806:4150820	attL	NA	NA	NA	NA
BBG79644.1\|4150832_4151384_-	phage polarity suppression protein	NA	NA	NA	NA
BBG79645.1\|4151380_4152124_-\|capsid	phage capsid size determining protein	NA	NA	NA	NA
BBG79646.1\|4152524_4155197_-	phage DNA replication protein	A0A1B0VP75	Pseudomonas_phage	4.1e-59	34.6
BBG79647.1\|4155193_4155577_-	hypothetical protein	NA	NA	NA	NA
BBG79648.1\|4155573_4155858_-	hypothetical protein	NA	NA	NA	NA
BBG79649.1\|4155889_4156249_-	hypothetical protein	NA	NA	NA	NA
BBG79650.1\|4156605_4156791_+	hypothetical protein	NA	NA	NA	NA
BBG79651.1\|4156887_4157118_-	hypothetical phage protein	NA	NA	NA	NA
BBG79652.1\|4157495_4158134_-	hypothetical protein	NA	NA	NA	NA
BBG79653.1\|4158163_4159426_-\|integrase	integrase	Q7M297	Enterobacteria_phage	2.4e-65	35.6
BBG79654.1\|4159870_4160890_+	alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	8.4e-45	30.7
BBG79655.1\|4161017_4162520_+	hypothetical protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.6
BBG79656.1\|4162680_4163763_-	lipopolysaccharide export ABC permease	NA	NA	NA	NA
BBG79657.1\|4163762_4164770_-	lipopolysaccharide export ABC permease	NA	NA	NA	NA
4164278:4164292	attR	NA	NA	NA	NA
BBG79658.1\|4165129_4166641_+	multifunctional aminopeptidase A	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
BBG79659.1\|4166676_4166910_+	hypothetical protein	NA	NA	NA	NA
BBG79660.1\|4166994_4167438_+	DNA polymerase III chi subunit HolC	NA	NA	NA	NA
BBG79661.1\|4167437_4170293_+\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7

DBSCAN-SWA_13

4505445 : 4603350

103

Escherichia_phage(47.27%)

terminase,protease,tail,integrase,capsid,transposase,tRNA,portal,plate,holin

attL 4515145:4515180|attR 4612235:4612270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG79958.1\|4505445_4506546_+\|tRNA	tRNA m(5)U54 methyltransferase	NA	NA	NA	NA
BBG79959.1\|4506585_4506945_-	inner membrane protein	NA	NA	NA	NA
BBG79960.1\|4506944_4507592_-	transcriptional repressor	NA	NA	NA	NA
BBG79961.1\|4507925_4509326_+	pyridine nucleotide transhydrogenase	NA	NA	NA	NA
BBG79962.1\|4509308_4510226_-	oxidative and nitrosative stress transcriptional regulator	NA	NA	NA	NA
BBG79963.1\|4510492_4511866_-	argininosuccinate lyase	NA	NA	NA	NA
BBG79964.1\|4511926_4512700_-	acetylglutamate kinase	NA	NA	NA	NA
BBG79965.1\|4512710_4513715_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
BBG79966.1\|4513868_4515020_+	acetylornithine deacetylase	NA	NA	NA	NA
4515145:4515180	attL	NA	NA	NA	NA
BBG79967.1\|4515617_4518269_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
BBG79968.1\|4518450_4520184_+	LPS heptose I phosphoethanolamine transferase	NA	NA	NA	NA
BBG79969.1\|4520398_4521250_+	AraC family transcriptional activator	NA	NA	NA	NA
BBG79970.1\|4521236_4521578_-	enzyme IIB component of PTS	NA	NA	NA	NA
BBG79971.1\|4521579_4522458_-	formate lyase II activase	NA	NA	NA	NA
BBG79972.1\|4522423_4524721_-	glycine radical domain-containing pyruvate formate-lyase	A0A1S6UAD4	Serratia_phage	4.6e-06	48.1
BBG79973.1\|4524771_4525092_-	enzyme IIB component of PTS	NA	NA	NA	NA
BBG79974.1\|4525106_4526186_-	enzyme IIC component of PTS	NA	NA	NA	NA
BBG79975.1\|4526494_4528996_+	PTS fructose transporter subunit IIA	A0A1V0SGR7	Hokovirus	7.9e-12	26.9
BBG79976.1\|4529007_4529670_+	fructose-6-phosphate aldolase 2	A0A0E3F0E2	Synechococcus_phage	5.5e-29	34.6
BBG79977.1\|4529680_4530784_+	glycerol dehydrogenase	NA	NA	NA	NA
BBG79978.1\|4531058_4531676_+	hypothetical protein	NA	NA	NA	NA
BBG79979.1\|4531702_4532608_-	hypothetical protein	NA	NA	NA	NA
BBG79980.1\|4532700_4534881_-	catalase-peroxidase HPI	NA	NA	NA	NA
BBG79981.1\|4535209_4536100_-	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA
BBG79982.1\|4536448_4538881_-	aspartokinase/homoserine dehydrogenase II	NA	NA	NA	NA
BBG79983.1\|4538883_4540044_-	cystathionine gamma-synthase	NA	NA	NA	NA
BBG79984.1\|4540320_4540638_+	Met repressor	NA	NA	NA	NA
BBG79985.1\|4540821_4541430_+	lipid binding hydrolase	NA	NA	NA	NA
BBG79986.1\|4541490_4541703_-	50S ribosomal subunit protein L31	NA	NA	NA	NA
BBG79987.1\|4541905_4544104_+	primosome assembly protein PriA	NA	NA	NA	NA
BBG79988.1\|4544259_4545285_+	transcriptional regulator	NA	NA	NA	NA
BBG79989.1\|4545481_4546336_+	cell division protein FtsN	NA	NA	NA	NA
BBG79990.1\|4546428_4546959_+\|protease	peptidase component of the HslUV protease	NA	NA	NA	NA
BBG79991.1\|4546968_4548300_+\|protease	molecular chaperone and ATPase component of HslUV protease	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
BBG79992.1\|4548366_4549293_+	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA
BBG79993.1\|4549385_4549871_+	ribonuclease E inhibitor protein	NA	NA	NA	NA
BBG79994.1\|4549955_4550195_-	cell division protein ZapB	NA	NA	NA	NA
BBG79995.1\|4550625_4551471_+	glycerol facilitator	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
BBG79996.1\|4551472_4553002_+	glycerol kinase	NA	NA	NA	NA
BBG79997.1\|4553007_4554147_+	fructose 1,6-bisphosphatase II	NA	NA	NA	NA
BBG79998.1\|4554243_4554990_+	ferredoxin-NADP reductase	NA	NA	NA	NA
BBG79999.1\|4554994_4555423_-	universal stress protein UspD	NA	NA	NA	NA
BBG80000.1\|4555449_4555749_-	hypothetical protein	NA	NA	NA	NA
BBG80001.1\|4555960_4556401_-	inner membrane protein	NA	NA	NA	NA
BBG80002.1\|4556501_4557101_+	hypothetical protein	NA	NA	NA	NA
BBG80003.1\|4557208_4557976_+	triosephosphate isomerase	NA	NA	NA	NA
BBG80004.1\|4558030_4558786_-	CDP-diacylglycerol phosphotidylhydrolase	NA	NA	NA	NA
BBG80005.1\|4558892_4559882_-	sulfate transporter subunit	NA	NA	NA	NA
BBG80006.1\|4560201_4561164_-	6-phosphofructokinase I	NA	NA	NA	NA
BBG80007.1\|4561344_4562247_-	ferrous iron and zinc transporter	NA	NA	NA	NA
BBG80008.1\|4562454_4563096_-	hypothetical protein	NA	NA	NA	NA
BBG80009.1\|4563240_4564092_-\|transposase	IS150 transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	7.8e-113	100.0
BBG80010.1\|4564088_4564610_-\|transposase	IS150 transposase A	A0A2I6AZV8	Macacine_betaherpesvirus	2.7e-92	100.0
BBG80011.1\|4564982_4566146_-	phage late gene regulator	U5N3V4	Enterobacteria_phage	4.8e-206	99.5
BBG80012.1\|4566145_4566625_-\|tail	phage tail assembly protein	A0A0F7LDE8	Escherichia_phage	1.5e-84	99.4
BBG80013.1\|4566639_4569087_-\|tail	phage tail protein	M1T2S3	Escherichia_phage	0.0e+00	95.2
BBG80014.1\|4569231_4569507_-	hypothetical protein	A0A0F7LDQ8	Escherichia_phage	2.2e-40	98.9
BBG80015.1\|4569563_4570082_-\|tail	phage tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
BBG80016.1\|4570094_4571285_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.7e-225	99.7
BBG80017.1\|4571344_4571890_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	4.0e-94	95.6
BBG80018.1\|4571954_4573490_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-289	99.4
BBG80019.1\|4573538_4573886_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
BBG80020.1\|4573882_4574287_-	hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
BBG80021.1\|4574428_4574944_+\|tail	phage tail fiber protein	A0A0F7LCR3	Escherichia_phage	5.0e-46	56.8
BBG80022.1\|4574943_4575561_+\|tail	phage tail fiber assembly protein	M1SV83	Escherichia_phage	3.4e-81	75.5
BBG80023.1\|4575532_4575949_-\|tail	phage tail fiber assembly protein	B6SCW7	Bacteriophage	3.4e-21	46.0
BBG80024.1\|4575951_4577247_-\|tail	phage variable tail fibre protein	A0A0F7LBW5	Escherichia_phage	1.6e-141	96.8
BBG80025.1\|4577243_4577855_-\|tail	phage tail protein	A0A0F7LA36	Escherichia_phage	1.4e-116	99.5
BBG80026.1\|4577847_4578756_-\|plate	phage baseplate assembly protein	U5N3T9	Enterobacteria_phage	3.7e-161	99.3
BBG80027.1\|4578760_4579108_-\|plate	phage baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	3.8e-58	99.1
BBG80028.1\|4579104_4579740_-\|plate	phage baseplate assembly protein	U5N3F0	Enterobacteria_phage	2.5e-111	98.1
BBG80029.1\|4579806_4580259_-\|tail	phage tail completion protein	A0A0F7LDR6	Escherichia_phage	4.5e-75	97.3
BBG80030.1\|4580251_4580719_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	3.3e-81	98.7
BBG80031.1\|4580681_4580840_-	hypothetical protein	M1RZ27	Escherichia_phage	2.6e-22	100.0
BBG80032.1\|4580826_4581252_-	hypothetical protein	A0A0F7L9Y0	Escherichia_phage	1.3e-63	94.3
BBG80033.1\|4581239_4581665_-	hypothetical protein	A0A0F7LBP4	Escherichia_phage	3.7e-55	92.9
BBG80034.1\|4581679_4582177_-	phage lysozyme	A0A0F7LBS0	Escherichia_phage	1.5e-92	99.4
BBG80035.1\|4582176_4582458_-\|holin	phage holin protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
BBG80036.1\|4582461_4582665_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	2.6e-30	98.5
BBG80037.1\|4582664_4583138_-\|capsid	phage capsid completion protein	U5N0S3	Enterobacteria_phage	9.5e-84	99.4
BBG80038.1\|4583273_4584017_-\|terminase	phage terminase small subunit	Q94MJ2	Enterobacteria_phage	4.6e-125	96.4
BBG80039.1\|4584020_4585094_-\|capsid	phage major capsid protein	Q94MI3	Enterobacteria_phage	2.2e-200	98.9
BBG80040.1\|4585152_4586007_-	phage scaffolding protein	Q778Z1	Enterobacteria_phage	1.7e-136	99.6
BBG80041.1\|4586180_4587953_+\|terminase	phage terminase large subunit	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
BBG80042.1\|4587952_4588987_+\|portal	phage portal protein	U5N087	Enterobacteria_phage	1.6e-200	99.1
BBG80043.1\|4589025_4589235_-	hypothetical protein	M1TAP7	Escherichia_phage	2.7e-14	83.0
BBG80044.1\|4589358_4591842_+	DEAD/DEAH box helicase	NA	NA	NA	NA
BBG80045.1\|4592081_4592855_-	hypothetical protein	Q858T4	Yersinia_virus	2.1e-133	93.0
BBG80046.1\|4593159_4593909_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
BBG80047.1\|4593920_4595462_-\|transposase	transposase	K4I413	Acidithiobacillus_phage	1.3e-129	46.4
BBG80048.1\|4595576_4596947_-	hypothetical protein	A0A0F7LA09	Escherichia_phage	1.3e-255	99.5
BBG80049.1\|4596936_4597212_-	hypothetical protein	A0A0F7LCM4	Escherichia_phage	2.3e-45	100.0
BBG80050.1\|4597208_4597433_-	TraR family phage/conjugal plasmid C-4 type zinc finger protein	A0A0F7LDI3	Escherichia_phage	3.8e-35	98.6
BBG80051.1\|4597432_4597735_-	hypothetical protein	A0A0F7LDT6	Escherichia_phage	2.5e-45	96.0
BBG80052.1\|4597734_4597959_-	hypothetical protein	S4TP68	Salmonella_phage	4.7e-33	100.0
BBG80053.1\|4598022_4598523_-	replication protein	M1SV55	Escherichia_phage	2.6e-92	100.0
BBG80054.1\|4598519_4598690_-	hypothetical protein	S4TNZ7	Salmonella_phage	6.1e-25	100.0
BBG80055.1\|4598692_4598965_-	regulatory protein Cox	Q1JS36	Enterobacteria_phage	1.4e-47	100.0
BBG80056.1\|4599101_4599395_+	repressor protein	Q1JS37	Enterobacteria_phage	2.7e-49	100.0
BBG80057.1\|4599464_4600445_+\|integrase	integrase	S4TP66	Salmonella_phage	4.7e-186	100.0
BBG80058.1\|4600631_4601132_-	inhibitor of the cpx response periplasmic adaptor protein	NA	NA	NA	NA
BBG80059.1\|4601281_4601980_+	two-component regulatory system response regulator CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
BBG80060.1\|4601976_4603350_+	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9
4612235:4612270	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. AP019190

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23443 : 58941

Acidithiobacillus_phage(20.0%)

integrase,transposase

attL 53477:53492|attR 65481:65496

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG80282.1\|23443_24985_+\|transposase	transposase	K4I413	Acidithiobacillus_phage	1.3e-129	46.4
BBG80283.1\|24996_25746_+\|transposase	transposase	K4HZD4	Acidithiobacillus_phage	3.9e-55	48.3
BBG80284.1\|25887_26103_+	hypothetical protein	NA	NA	NA	NA
BBG80285.1\|26099_27002_+	hypothetical protein	Q2A0A7	Sodalis_phage	9.0e-67	53.8
BBG80286.1\|27063_27270_+	hypothetical protein	NA	NA	NA	NA
BBG80287.1\|27209_27551_-	hypothetical protein	NA	NA	NA	NA
BBG80288.1\|28130_28979_+	restriction methylase	NA	NA	NA	NA
BBG80289.1\|29065_29407_-	mobilization protein MobC	NA	NA	NA	NA
BBG80290.1\|29634_29967_+	plasmid conjugation system NikA protein	NA	NA	NA	NA
BBG80291.1\|30172_32677_+	plasmid conjugation system NikB protein	NA	NA	NA	NA
BBG80292.1\|32714_34748_-	conjugal transfer protein TrbC	NA	NA	NA	NA
BBG80293.1\|34998_36069_-	conjugal transfer protein	NA	NA	NA	NA
BBG80294.1\|36087_37296_-	conjugal transfer protein TrbA	NA	NA	NA	NA
BBG80295.1\|37602_38385_-	hypothetical protein	F8J1D6	Lactobacillus_phage	1.1e-12	35.3
BBG80296.1\|38580_38898_+	multidrug efflux system protein	NA	NA	NA	NA
BBG80297.1\|38894_39428_-	outer membrane lipoprotein Blc	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1
BBG80298.1\|39521_40667_-	class C extended-spectrum beta-lactamase CMY-42	NA	NA	NA	NA
BBG80299.1\|41119_41386_-	hypothetical protein	U5P0U6	Shigella_phage	5.4e-44	100.0
BBG80300.1\|41541_41817_-\|transposase	transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
BBG80301.1\|41901_42111_+	hypothetical protein	NA	NA	NA	NA
BBG80302.1\|42364_43048_+	conjugal transfer protein TraC	NA	NA	NA	NA
BBG80303.1\|43219_43474_+	pilus assembly protein	NA	NA	NA	NA
BBG80304.1\|44332_44524_+	hypothetical protein	NA	NA	NA	NA
BBG80305.1\|44978_45290_-	hypothetical protein	NA	NA	NA	NA
BBG80306.1\|45587_46025_+	pilus assembly protein	NA	NA	NA	NA
BBG80307.1\|46038_47721_+	lipoprotein	NA	NA	NA	NA
BBG80308.1\|47713_48424_+	hypothetical protein	NA	NA	NA	NA
BBG80309.1\|48739_49009_+	hypothetical protein	NA	NA	NA	NA
BBG80310.1\|48995_49448_+	pilus assembly protein PilP	NA	NA	NA	NA
BBG80311.1\|49458_51012_+	DNA-binding protein	NA	NA	NA	NA
BBG80312.1\|51024_52110_+	transmembrane protein	NA	NA	NA	NA
BBG80313.1\|52126_52741_+	type IV prepilin PilS	NA	NA	NA	NA
53477:53492	attL	NA	NA	NA	NA
BBG80314.1\|53951_55376_+	shufflon protein	NA	NA	NA	NA
BBG80315.1\|55679_55835_+	hypothetical protein	NA	NA	NA	NA
BBG80316.1\|56162_56297_-	hypothetical protein	NA	NA	NA	NA
BBG80317.1\|56699_57026_-	hypothetical protein	NA	NA	NA	NA
BBG80318.1\|57200_57476_+\|transposase	transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
BBG80319.1\|57631_57898_+\|transposase	IS1 family transposase InsB	U5P0U6	Shigella_phage	7.3e-41	94.3
BBG80320.1\|57930_58941_+\|integrase	integrase	A0A1L7DQ84	Ralstonia_phage	2.8e-40	42.6
65481:65496	attR	NA	NA	NA	NA

DBSCAN-SWA_2

65517 : 71034

Macacine_betaherpesvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG80327.1\|65517_65694_+	hypothetical protein	A0A2H4J7S3	uncultured_Caudovirales_phage	1.4e-11	51.8
BBG80328.1\|65758_66055_-	hypothetical protein	NA	NA	NA	NA
BBG80329.1\|66354_66606_+	hypothetical protein	NA	NA	NA	NA
BBG80330.1\|66907_67429_+\|transposase	IS150 transposase A	A0A2I6AZV8	Macacine_betaherpesvirus	2.7e-92	100.0
BBG80331.1\|67425_68277_+\|transposase	IS150 transposase B	A0A2I6AZV9	Macacine_betaherpesvirus	7.8e-113	100.0
BBG80332.1\|68596_68971_+	hypothetical protein	NA	NA	NA	NA
BBG80333.1\|69123_70308_+\|transposase	ISEcp1 transposase	A0A1B0VDR3	Salmonella_phage	8.3e-20	100.0
BBG80334.1\|70336_70612_+\|transposase	transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
BBG80335.1\|70767_71034_+	hypothetical protein	U5P0U6	Shigella_phage	5.4e-44	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP018147

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. AP019189

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. AP019190

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection