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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034239 Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence 0 crisprs NA 0 0 0 0
CP034241 Aliivibrio salmonicida strain VS224 chromosome II, complete sequence 0 crisprs cas3,csa3,DEDDh,RT 0 0 8 0
CP034240 Aliivibrio salmonicida strain VS224 chromosome I, complete sequence 0 crisprs csa3,DinG,cas3,DEDDh,csx1 0 0 18 0
CP034238 Aliivibrio salmonicida strain VS224 plasmid pRVS1-224, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. CP034241
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7795 : 96304 48 Leptospira_phage(44.44%) tRNA,transposase NA
DBSCAN-SWA_2 105879 : 154302 41 Leptospira_phage(33.33%) integrase,transposase attL 118415:118474|attR 155992:156793
DBSCAN-SWA_3 184820 : 232211 46 uncultured_Caudovirales_phage(37.5%) transposase NA
DBSCAN-SWA_4 244435 : 318171 55 Leptospira_phage(50.0%) protease,transposase NA
DBSCAN-SWA_5 518380 : 574899 53 Leptospira_phage(15.38%) integrase,transposase attL 530634:530693|attR 573396:575710
DBSCAN-SWA_6 681853 : 687875 9 Vibrio_phage(85.71%) integrase attL 677499:677516|attR 698330:698347
DBSCAN-SWA_7 819328 : 885886 56 uncultured_Caudovirales_phage(30.0%) capsid,transposase NA
DBSCAN-SWA_8 1083169 : 1154211 55 Hokovirus(18.18%) tRNA,protease,transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP034240
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2502 : 57690 48 Tupanvirus(33.33%) transposase,tRNA NA
DBSCAN-SWA_2 69560 : 135575 54 Leptospira_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_3 858748 : 996483 112 Leptospira_phage(20.69%) protease,tRNA,integrase,capsid,transposase,tail attL 982842:982901|attR 1000613:1001627
DBSCAN-SWA_4 999688 : 1070095 75 Vibrio_phage(65.79%) portal,integrase,tRNA,head,terminase,capsid,transposase,tail attL 1000648:1000672|attR 1071319:1071343
DBSCAN-SWA_5 1081419 : 1219378 110 Leptospira_phage(21.05%) protease,tRNA,bacteriocin,transposase,plate NA
DBSCAN-SWA_6 1277330 : 1330047 49 Leptospira_phage(50.0%) transposase,holin NA
DBSCAN-SWA_7 1347320 : 1393931 38 Leptospira_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_8 1408009 : 1460839 52 Leptospira_phage(44.44%) transposase NA
DBSCAN-SWA_9 1479992 : 1526169 38 uncultured_Caudovirales_phage(28.57%) transposase NA
DBSCAN-SWA_10 1587831 : 1666663 57 Tupanvirus(20.0%) protease,transposase NA
DBSCAN-SWA_11 1673736 : 1808403 101 Leptospira_phage(30.77%) protease,transposase,tRNA NA
DBSCAN-SWA_12 2046111 : 2109880 45 Leptospira_phage(40.0%) transposase NA
DBSCAN-SWA_13 2292857 : 2350660 52 Leptospira_phage(33.33%) protease,transposase,tRNA NA
DBSCAN-SWA_14 2596979 : 2605806 11 uncultured_Mediterranean_phage(28.57%) tRNA NA
DBSCAN-SWA_15 2713772 : 2790136 59 Leptospira_phage(38.46%) protease,transposase,tRNA NA
DBSCAN-SWA_16 2866891 : 2918586 45 Leptospira_phage(54.55%) protease,transposase,tRNA NA
DBSCAN-SWA_17 2973232 : 3034741 48 Leptospira_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_18 3107160 : 3171338 57 Leptospira_phage(30.77%) transposase,tRNA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP034238
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 9737 : 69936 59 Salmonella_phage(66.67%) integrase,transposase,protease attL 27492:27507|attR 30107:30122
DBSCAN-SWA_2 234809 : 263365 27 Salmonella_phage(42.86%) integrase,transposase attL 241223:241282|attR 256340:259555

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage