CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP019005	Hydrogenimonas sp. MAG DNA, complete genome	4 crisprs	DEDDh,cas4,cas9,cas1,cas2,csa3,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,csx1,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	0	16	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP019005_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019005_1

858099-858237

Orphan

Consensus_repeat	Method
GGGTGCAGGGGACGGTCAGTCCCCGCCGGAAGATGGGCTTTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019005_1

>merge|AP019005|1|858099-858237|CRISPRCasFinder
GGGTGCAGGGGACGGTCAGTCCCCGCCGGAAGATGGGCTTTGCCCGTCTTTCGCGTAACATCATCTCGAAATCTGCGATTTCGTAGCTTTAGGGGGGTGCAGGGGACGGTCAGTCCCCGCCGAAAGATGGGCTTTGCCC

>AP019005|1|1|858099-858237|CRISPRCasFinder
GGGTGCAGGGGACGGTCAGTCCCCGCCGGAAGATGGGCTTTGCCC	GTCTTTCGCGTAACATCATCTCGAAATCTGCGATTTCGTAGCTTTAGGG
GGGTGCAGGGGACGGTCAGTCCCCGCCGAAAGATGGGCTTTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
AP019005.1\|BBG65595.1\|866925_868173_+\|putative-integral-membrane-zinc-metalloprotease	unknown	unknown	gnl\|CDD\|320702
AP019005.1\|BBG65586.1\|857632_857974_+\|periplasmic-divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
AP019005.1\|BBG65582.1\|854035_855172_+\|UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate-aminotransferase	unknown	unknown	gnl\|CDD\|223476
AP019005.1\|BBG65581.1\|852986_853814_+\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|377292
AP019005.1\|BBG65588.1\|859741_860971_+\|HI0933-like-protein	unknown	unknown	gnl\|CDD\|272992
AP019005.1\|BBG65584.1\|856422_857274_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
AP019005.1\|BBG65596.1\|868169_869003_+\|protein-N(5)-glutamine-methyltransferase-PrmC,-methylates-polypeptide-chain-release-factors-RF1-and-RF2	unknown	unknown	gnl\|CDD\|236467
AP019005.1\|BBG65590.1\|862439_862874_-\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG65589.1\|860997_862302_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|223594
AP019005.1\|BBG65583.1\|855171_856098_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
AP019005.1\|BBG65592.1\|863565_864384_+\|NAD-dependent-protein-deacetylase-of-SIR2-family	unknown	unknown	gnl\|CDD\|223915
AP019005.1\|BBG65580.1\|852320_852917_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|293792
AP019005.1\|BBG65577.1\|849915_850830_-\|cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|223131
AP019005.1\|BBG65585.1\|857301_857664_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
AP019005.1\|BBG65591.1\|863016_863334_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
AP019005.1\|BBG65587.1\|858275_859742_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
AP019005.1\|BBG65594.1\|864683_866633_-\|ATPase-components-of-ABC-transporters-with-duplicated-ATPase-domains	unknown	unknown	gnl\|CDD\|223562
AP019005.1\|BBG65579.1\|851830_852307_+\|Hot-dog-fold-protein-HP0420	unknown	unknown	gnl\|CDD\|224961
AP019005.1\|BBG65593.1\|864374_864683_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG65578.1\|850916_851822_+\|tRNA-(5-methoxyuridine)-34-synthase	unknown	unknown	gnl\|CDD\|237898

Protein	Function_ID	Function_description	E-value
AP019005.1\|BBG65595.1\|866925_868173_+\|putative-integral-membrane-zinc-metalloprotease	gnl\|CDD\|320702	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase. This family contains peptidase family M48 subfamily A which includes a number of well-characterized genes such as those found in humans (ZMPSTE24, also known as farnesylated protein-converting enzyme 1 or FACE-1 or Hs Ste24), Taenia solium metacestode (TsSte24p), Arabidopsis (AtSte24) and yeast (Ste24p). Ste24p contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is thought to be intimately associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. Ste24p is involved in the post-translational processing of prelamin A to mature lamin A, a major component of the nuclear envelope. ZmpSte24 deficiency causes an accumulation of prelamin A leading to lipodystrophy and other disease phenotypes, while mutations in this gene or in that encoding its substrate, prelamin A, result in a series of human inherited diseases known as laminopathies, the most severe of which are Hutchinson Gilford progeria syndrome (HGPS) and restrictive dermopathy (RD) which arise due to unsuccessful maturation of prelamin A. Two forms of mandibuloacral dysplasia, a condition that causes a variety of abnormalities involving bone development, skin pigmentation, and fat distribution, are caused by mutations in two different genes; mutations in the LMNA gene, which normally provides instructions for making lamin A and lamin C, cause mandibuloacral dysplasia with A-type lipodystrophy (MAD-A), and mutations in the ZMPSTE24 gene cause mandibuloacral dysplasia with B-type lipodystrophy (MAD-B). Within cells, these genes are involved in maintaining the structure of the nucleus and may play a role in many cellular processes. Certain HIV protease inhibitors have been shown to inhibit the enzymatic activity of ZMPSTE24, but not enzymes involved in prelamin A processing.	3.26651e-145
AP019005.1\|BBG65586.1\|857632_857974_+\|periplasmic-divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	2.74122e-46
AP019005.1\|BBG65582.1\|854035_855172_+\|UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate-aminotransferase	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	6.29014e-105
AP019005.1\|BBG65581.1\|852986_853814_+\|uncharacterized-protein	gnl\|CDD\|377292	pfam04305, DUF455, Protein of unknown function (DUF455).	5.38794e-97
AP019005.1\|BBG65588.1\|859741_860971_+\|HI0933-like-protein	gnl\|CDD\|272992	TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity].	1.4467e-158
AP019005.1\|BBG65584.1\|856422_857274_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	6.94095e-139
AP019005.1\|BBG65596.1\|868169_869003_+\|protein-N(5)-glutamine-methyltransferase-PrmC,-methylates-polypeptide-chain-release-factors-RF1-and-RF2	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.14984e-91
AP019005.1\|BBG65589.1\|860997_862302_-\|cysteine-desulfurase	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	8.20333e-80
AP019005.1\|BBG65583.1\|855171_856098_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	1.07037e-68
AP019005.1\|BBG65592.1\|863565_864384_+\|NAD-dependent-protein-deacetylase-of-SIR2-family	gnl\|CDD\|223915	COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription].	6.40514e-39
AP019005.1\|BBG65580.1\|852320_852917_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	3.93668e-62
AP019005.1\|BBG65577.1\|849915_850830_-\|cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.07122e-81
AP019005.1\|BBG65585.1\|857301_857664_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	5.82566e-13
AP019005.1\|BBG65591.1\|863016_863334_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.16793e-15
AP019005.1\|BBG65587.1\|858275_859742_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
AP019005.1\|BBG65594.1\|864683_866633_-\|ATPase-components-of-ABC-transporters-with-duplicated-ATPase-domains	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	5.98423e-169
AP019005.1\|BBG65579.1\|851830_852307_+\|Hot-dog-fold-protein-HP0420	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	8.66218e-13
AP019005.1\|BBG65578.1\|850916_851822_+\|tRNA-(5-methoxyuridine)-34-synthase	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	5.00235e-153

>AP019005.1|BBG65586.1|857632_857974_+|periplasmic-divalent-cation-tolerance-protein-CutA
MHQFRARPVSRYILVLVTAPTADEAELIAQKLLKKRLAACVNIVPNLLSIYRWKGKVERDEECMMIIKTEKRVLKKLEKRIKKMHSYEVPEILVFRVEEGEKEYLKWISSVVK
>AP019005.1|BBG65585.1|857301_857664_+|antibiotic-biosynthesis-monooxygenase
MSKKIYCLAHFKPKAGKEMELFELLKSLEPDTLREDGCIQYIVTRKIENPCADGEGFPIVFNEIWADRDSFEAHCNRRAIREFFQKQCVDEEGLVEAYNVCVYSDEPKDYDAPVQGSTCE
>AP019005.1|BBG65584.1|856422_857274_+|acetylglutamate-kinase
MQKKMQVVQTLLDTLPFIKKFAGQTIVIKFGGAAQKSPQLKEKFAQDIVLMHLVGIRPVIVHGGGPKITQLLADLGIDTEFVEGQRVTTKEAMRIVEMVLSGEVNKEIVSALNDHGSKAIGISGKDAHFILARAKDRSKWGYTGIIEEIHAEVVQNLMNEDFIPVIAPIAASKDPGEPGFNINADLAASKIAMALKASKVVFLTDTPGVLDSEGKLIGTLGTEKINLLKNEGVISGGMVPKVDACLEAINGGVQKAHIIDGRIEHSILLEIFTSEGIGTQIVH
>AP019005.1|BBG65583.1|855171_856098_+|tetraacyldisaccharide-4'-kinase
MSSLVAFFENLYYRPRWYHWPVAIALLPLSLLYASLMLLRRYAAKPGSYGVPVVSIGNLLVGGSGKTPMTIELAGRFEKAAVVLRGYGRKSSGLVVVSRWGKIGCGVEESGDEAMLLAKSLPDVCVIVSQNRPEAIEKAKELGAKVVFLDDGFSKVDIEKLDILLYPPKVPNPLPLPSGPFREFAFARRYADLTLVEGRDFRRVVSCEGCDEPMLLVTAIANPRRLEPYLPDGLVKGRVVLPDHAWFEREQIEEAMKKAGVKKILTTEKDLVKLEGFGFETALLKLRLDLDPHVYESVERSMGLENFP
>AP019005.1|BBG65582.1|854035_855172_+|UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate-aminotransferase
MARKIPFYKPDIGQAEKAQIEEVLELEELQKAEELEEAFLKRTGASYAISTNSGTSALHLSMCAMDLKRGDKIICSVNSFPSVPEVVRHFDAEPIFVDIDPEDFNIDLDAFEKVLEENISKKLKGAIINHVAGQPTDLDRLYKIAKRFNIKIVEDASDALGGTYEGKPIGATGADITCFSFSPHMKNSVANAGVMLCEDETLYNRGMLLRNHAIESSGWDKYGNLEYIYDVVDIGWKYDISELDAAYALAQYGRLEKMIGRRKEIAKMYDEALEGVNHVSIPVRKRDHIYQLYIIKIDRNRDGFARELKDRGIHCGLHYIPLHLMSYYKQKYSLRVNDFQSALQTYQQVLSLPIYNNMTDAEVEYVCDMVKEVAAKHI
>AP019005.1|BBG65581.1|852986_853814_+|uncharacterized-protein
MKTSDFFTLALEALRESAPNQKCALVGKLYSNLKQGALTFDHSSPVLEIERPSYAGFATVVKPSEVPSRKRFDTKEGQAVLLHAIAHIEYSAIDLALDSAYRFRGMPTDYYIDWIEVADDEVRHFGMLEVLMENIGVKYGEFPVHTLLFDAGRRSGGDLLERMAVVPRYLEAGGLDANPKIVKKLQSYPKTGQIEAMIEFLETILREEVDHVGKGDKWFKFEAARRGVDESVYFEIIERFYPGFEKRGAQMNVHARLKAGFSCSELKRMGAEKCN
>AP019005.1|BBG65580.1|852320_852917_-|hydroxyacylglutathione-hydrolase
MQIKVKPMGQYQTNCYIVSEAGTDLIIDPGVGATEWVMQNVRKPAAILNTHGHFDHIWSNKELKELLKVPIYCPKEDIFMLEKDPFGQRVPPSKADVAVEPDAKYTIGGIDVTFLHFPGHTPGCSAIEIGDNWFCGDFLFRGSIGRVDFPYSDPEAMKRSLKKALAYPKNVTLYPGHGPKSTLENEKRGSIPYWIDIL
>AP019005.1|BBG65579.1|851830_852307_+|Hot-dog-fold-protein-HP0420
MAKEREDNQESGESGAEPSFPENIELKTHERIDQSLCGTLLELKEGYAKVELQTTRQMAVDEMGLVHGGFTFAAADFAAMAAVNDPNVVLVGSECRFLSPVKVGDRVLFEAHEQYRESRKRKIKVIGTFEDIKVFEGDFMAVVLERHVLKLKLLKEEE
>AP019005.1|BBG65578.1|850916_851822_+|tRNA-(5-methoxyuridine)-34-synthase
MELKKIIEERRAWLKWKNIAPLREALSALPEIEDVEVELGDWIRLRSPSCTEEHRVVLDEAARMMKPWRKGPFDLFGVRIDSEWRSYMKYNLLRPFLDLEGKCVADVGCNNGYYMFRMLEFSPKSIVGVDPSPLFFTQFGLINRYLRSDRVRYEMLGIEHMPGFADMFDTVICLGVLYHRSDPIVALKALKSSLKRGGELILDTFMIDGEEPLCLVPESTYSKISNVHFVPTVTALENWCKKAGFERFEVLAAVKTGTEEQRKTEWIEGQSLQEFLHPQNPELTVEGYPAPRRVYVRAYRK
>AP019005.1|BBG65577.1|849915_850830_-|cobalt-zinc-cadmium-resistance-protein
MTLQKKATIISSSVAVTLVVIKLIVGIISGSVAVLASAIDSGLDLAVSLFNLFAVTNAEKPADERFNYGRGKIEAIAAVIEGVIITASGIYIFYEAIQKIIGAEPVTHLDISIGVMVVSIVMTGALVMFLNHVAEVTNSMVIKSDALHYKTDLLSNGAILVSLVIIYFTDFFMIDAILGILIALYIVYSAFELIKEGILVLMDVSLDEETVQKIRSVIESEPGITDYHWLKTRKAGNDYFVDVHLVFTPDISLLEAHRIGDNVEAKIKAINPKADWLINIHLDPYDDSVINEEEQALGESAGKS
>AP019005.1|BBG65587.1|858275_859742_+|threonine-synthase
MRFTETRGNDSKKSPEVSFSEAVLSPSASFGGLYVPKALPRLDFDFFKKHAKSRYKELSLALFEKFDVDIDRGDLEAALNRYDAFDDPNDPVPLVKVEEDAFISELWHGPTRAFKDMALQPFGYILSRLAEKRGEHYLIMAATSGDTGPATLETFKNASNVKVACLYPEGGTSDVQRLQMVTEDAANEKVIGIHGNFDDAQTALKNLLASDSFKARLKESGTELSAANSVNFGRIIFQIIYHVYSYLKLVDRGEVSMGESVYLIVPSGNFGNALGGYYAKKMGLPVEKILISSNINNILTDLITKGEYDLTSRSLVQTTSPAMDILKSSNVERVLFDKFGPERTKSLMDELNEKGRYVLTKEELDILREDFDATFSSDEEGREVIAEYAKRGYIMDPHTATCFKAYEKLRKKSLKSVIYSTAEWTKFSPTVCEALGHRVEHDREALEWISSHYGVSVPKMIAELFEKPIIHKTVIDKERIEEEILGFI
>AP019005.1|BBG65588.1|859741_860971_+|HI0933-like-protein
MRIAIVGGGASGLTAALAASGRGLKIDLYEQNSEPGRKILASGNGRCNISNISLSSEDYYGEHPSFVKPVLNGFDFKAFERFSFSYGLMLDVREDGRVYPLSNEARSVHEILCSSAKERGVNFQTRTFVESIDRVAGSFIIETSGRSERYDRVLLATGSPAAPQLGGGMSGLRMAEALGHRIVEPYPTLVGLHLKGSLHEVMSGVKCRAGITLYVDSKRRTEIVGDLLFTRYGVSGFGVLDISTEASHALRRGRNVSLGIDLMPGLARQGLVQKMEKIRRRVPQSSTFLMLHGFLPRRVVSAVVEDLKLDPKKICADLGPKEIRRIASTICDWRFEVSDTHGYRHAETAGGGVSTEDVDSSTMESKIVPGLHFSGEILDIVGRRGGYNLHFAWASGYLAGRAIRTKMSR
>AP019005.1|BBG65589.1|860997_862302_-|cysteine-desulfurase
MHPELFRPLLGSGDIQNELFENTIGIRKATYFDFTATGLAYRPIEDRMRELLEYYANTHSKEAYLAETMQECYEAARRSLKDSLDLEDDFLVIPTGFGATGAIKRFQELMGLYIPPAVCKRLGSKPEVEKRPLVIVGPYEHHSNELGFRESLCDIHRVPLTDEGYVDLYDLEKILKKNRGREIIGSFCIASNATGIITPYADISALLRDYGATVCFDAAATSAYMNIPSKLYDAMFLSAHKLLGGPGSSGLLLIRKGMVDTSIAPTYPGGGTVTYVSRKSHRFHEDAEVREDAGTPAILQFIKAALAYQLRNEMGLEWIAERKKELYTHFVSRIESIGGYQILGNRRAENIGIVSLVPEKGSPYDLCRTLSRDYGIETRAGCSCAGPYGHDLLGLEDDTDMSELPGWLRISIHPIQTKESLDRLAKALEESLAR
>AP019005.1|BBG65590.1|862439_862874_-|hypothetical-protein
MKKMVFSLGLVISLSVAGQPNTPMTPEQKALQKTMKTFAKGLSRIQHGILYNDRVELLAGVRMIKRTEEGFLTRHGEVLKKYMPENPKFAVSLAKLSEKNIERYIRMMRSDIFSKQDFSRITAGYTHIMQECVGCHQKLRKWKW
>AP019005.1|BBG65591.1|863016_863334_-|thioredoxin
MQISDLKRRIENSPAIMLYFEGEQCNVCRALKPKLFEAFDKNFPKIEKVAVDVGGNSEVAAQFGVFSIPTAIIFLDSKEFARVGRNVSIAALVEQIKRPYEMMFS
>AP019005.1|BBG65592.1|863565_864384_+|NAD-dependent-protein-deacetylase-of-SIR2-family
MDEDIESFVKESEAVLITAGAGMGVDSGLPDFRGDEGFWRAYPAAKRLGLSFAELANPRWFETDPALAWAFYGHRLHLYRDTVPHDGFGMLLEFAKSKDEWFVFTSNVDGQFQKGGFDEEKIVECHGSIHHLQCTVCGSGIWSADGVDIPVDMDSFRALEWPACHACGATARPNILMFGDWGWDSARTLAQEERFDDFLQRVSVKRAKLLIVEIGAGTAVPTVRLTGERIARATGGRLIRINPREPQIESSLGVGLAMGGFDGIERIIKKCR
>AP019005.1|BBG65593.1|864374_864683_+|hypothetical-protein
MSIGELLKVSGTALLAVAFLTGCASESSYLSAHSASFVSGYKDGCESAKRYFENSLIEVEKPPVYSENEEYRKGWDDGYERCYSYEEMEIDLSRPAIFGALR
>AP019005.1|BBG65594.1|864683_866633_-|ATPase-components-of-ABC-transporters-with-duplicated-ATPase-domains
MALVDLLDVDKQFEAQTIFKGINFHIDEYERIVIVGRNGSGKSTLMKIVSGEIEPDSGKRVVRQGIRIEMLPQQPHFEAGVSVRDAVEKELTEIQEAKKRFEELSAELAEDFENPQLLDEHAKLTAFLDYHNAWNLDDKIERILKEFDLKAYENRPVNLLSGGEQRRVALASLLLKKPDILMLDEPTNHLDVYMVEFLEELLLKEKFTLLLISHDRYFIDRIATRTVEIDDHKLRSFKGGYESYLHQKEQLLHAMAKEHENLLKLLKAEEEWLSRGVKARLKRNEGRKKRVMQMREQAKKNPSVIHKIKLELEREKHHFNREEGVSRKKVLFEIEHLEKRLGEKLLIHNFSNRILQKDRIAIVGKNGSGKSTFLHLLLGREKPDGGVIKRGDFKIGYFDQHREMLDDDKNLIETFCPYGGDRVDVQGKNMHVYGYLKNFLFPKEYLDKKIGVLSGGEKNRVALALLFTKKVDCLILDEPTNDLDIPTINILEEYLLNFPGALIFVSHDRYFVDKIAKKLFIFKGSGIVEESYQPYSEFLAIEKELKSIEHFEHDLNTRKEQTSNEERRPAKKRKRLSYKDQRELDSLPEEIERLENRIAELNECLADPECYQERGIVKLTDELNELEVEYNTKADRYLELLELQEELEG
>AP019005.1|BBG65595.1|866925_868173_+|putative-integral-membrane-zinc-metalloprotease
MIEALSVIFFLYVLLKVYISVMQIGFVSRAKHMNPVLMTPSRYMKAANYLISTERLKIVETLIEYALFVFWLSWGIRWLDTLTWNMDPVLQAVVAVNLFLIVNYIVELPFSIYKTFVIDERYKFNNMTPELFVSDQLKGGLMTLAFASVLSAAIAWIIMHVPMWWFFSFLLIFAVIVIVNLLYPTLIAPMFNKFTPLENDTLNAKIKELLQKSGFESEGVFVVDASKRDSRLNAYFGGLGKSKRVVLFDTLLQKLTENELLAVLAHELGHFRHHDIYKNIAMLGGILFVGFYIFGHIPTSFFMELGVRETPAMLMVLFMLLISVFLFIFMPVISFISRRNEYEADRYAAQVCSAEDLVSALKKLVEENQSFPKAHPLTIFFYYSHPPIVERLKALGDKSVAVDKSDEALKGECTL
>AP019005.1|BBG65596.1|868169_869003_+|protein-N(5)-glutamine-methyltransferase-PrmC,-methylates-polypeptide-chain-release-factors-RF1-and-RF2
MTVEEALREASSMLKGVAQRPRLEAEILLTRFLECDRTQLHLNGSKALESAESYFETVQRRVRSEPVEYITGRVSFYDIELEVGPGVLIARPETELLVDRCAQVISSNSISTVAEIGVGSGAVSIVLARMFPRLRITATDISAEALKYAKRNVERYGLEERIELVECSLLDGVDREVDMIVSNPPYISEEYELPPPLRYEPLNALVGGERGDEILKKIISLSIERRVPHLVCEMGYDQRKPVLEYCESLSLKEPEFYKDLSGLDRGFYLKPVHKDLT

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Crispr_ID: AP019005_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019005_2

1605480-1606242

TypeII

Consensus_repeat	Method
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	CRT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	PILER-CR
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	CRISPRCasFinder
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	PILER-CR

11 spacers

cas2,cas1,cas9

The CRISPR arrays of AP019005_2

>merge|AP019005|2|1605480-1606242|CRT,PILER-CR,CRISPRCasFinder,PILER-CR
GGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATACATTCTTGCTATAATACCCCTATGCCACGGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATGGTACAATTGTACGGGTTGAGCTCCAATTTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATAGCTTATTTCGATACGTAAGACGTTCATATGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATAGCACATATCGTAAGGTATACTGAGCCCCCGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATCTGATCTTCGGAAAAGCGGAAGTGTTCGGTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATCTGATCTTCGGAAAAGCGGAAGTGTTCGGTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATGAAACCGGGACTGGAAGAGCTAGGCTGGTTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATGAAGGGTAAAAAGAAAGCTGGGAAGCCTATGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATGACTCATTGTTTAACCTTCCCGGCTGCAATGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATTGCCGCCACTGAGAAAACACCGTGAAATATGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATAGGGCTAAAGGCGGCTAAAAACTTCCTCTTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT

>AP019005|2|1|1605480-1606242|CRT
GGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	ACATTCTTGCTATAATACCCCTATGCCAC
GGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GGTACAATTGTACGGGTTGAGCTCCAATT
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCTTATTTCGATACGTAAGACGTTCATA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCACATATCGTAAGGTATACTGAGCCCC
CGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	CTGATCTTCGGAAAAGCGGAAGTGTTCGG
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	CTGATCTTCGGAAAAGCGGAAGTGTTCGG
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GAAACCGGGACTGGAAGAGCTAGGCTGGT
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GAAGGGTAAAAAGAAAGCTGGGAAGCCTA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GACTCATTGTTTAACCTTCCCGGCTGCAA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	TGCCGCCACTGAGAAAACACCGTGAAATA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGGGCTAAAGGCGGCTAAAAACTTCCTCT
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT

>AP019005|2|1|1605481-1605780|PILER-CR
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	ACATTCTTGCTATAATACCCCTATGCCACG
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GGTACAATTGTACGGGTTGAGCTCCAATTT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCTTATTTCGATACGTAAGACGTTCATAT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCACATATCGTAAGGTATACTGAGCCCCC
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATCTGATCTTCGGAAAAGCGGAAGTGTTCGGTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATCTGATCTTCGGAAAAGCGGAAGTGTTCGGTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATGAAACCGGGACTGGAAGAGCTAGGCTGGTTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GAAGGGTAAAAAGAAAGCTGGGAAGCCTA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GACTCATTGTTTAACCTTCCCGGCTGCAA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	TGCCGCCACTGAGAAAACACCGTGAAATA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGGGCTAAAGGCGGCTAAAAACTTCCTCT


>AP019005|2|2|1605481-1606242|CRISPRCasFinder
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	ACATTCTTGCTATAATACCCCTATGCCACG
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GGTACAATTGTACGGGTTGAGCTCCAATTT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCTTATTTCGATACGTAAGACGTTCATAT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCACATATCGTAAGGTATACTGAGCCCCC
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	CTGATCTTCGGAAAAGCGGAAGTGTTCGGT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	CTGATCTTCGGAAAAGCGGAAGTGTTCGGT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GAAACCGGGACTGGAAGAGCTAGGCTGGTT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GAAGGGTAAAAAGAAAGCTGGGAAGCCTAT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GACTCATTGTTTAACCTTCCCGGCTGCAAT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	TGCCGCCACTGAGAAAACACCGTGAAATAT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGGGCTAAAGGCGGCTAAAAACTTCCTCTT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT

>AP019005|2|2|1605942-1606242|PILER-CR
	ACATTCTTGCTATAATACCCCTATGCCACG
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GGTACAATTGTACGGGTTGAGCTCCAATTT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCTTATTTCGATACGTAAGACGTTCATAT
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGCACATATCGTAAGGTATACTGAGCCCCC
GTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATCTGATCTTCGGAAAAGCGGAAGTGTTCGGTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATCTGATCTTCGGAAAAGCGGAAGTGTTCGGTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAATGAAACCGGGACTGGAAGAGCTAGGCTGGTTGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GAAGGGTAAAAAGAAAGCTGGGAAGCCTA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	GACTCATTGTTTAACCTTCCCGGCTGCAA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	TGCCGCCACTGAGAAAACACCGTGAAATA
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT	AGGGCTAAAGGCGGCTAAAAACTTCCTCT
TGTTTTAAGACCCCTCAAAACCCTGACCTGTTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
AP019005.1\|BBG66269.1\|1598032_1598722_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66267.1\|1594486_1595677_+\|NADH-dehydrogenase	unknown	unknown	gnl\|CDD\|224172
AP019005.1\|BBG66273.1\|1600712_1604102_+\|CRISPR-associated-protein,-Csn1-family	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
AP019005.1\|BBG66284.1\|1611124_1613197_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
AP019005.1\|BBG66270.1\|1598763_1599447_+\|Orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
AP019005.1\|BBG66268.1\|1596069_1598028_+\|acetyl-coenzyme-A-synthetase	unknown	unknown	gnl\|CDD\|234677
AP019005.1\|BBG66286.1\|1614517_1614727_-\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66278.1\|1608188_1608818_-\|FIGfam010717	unknown	unknown	gnl\|CDD\|226198
AP019005.1\|BBG66285.1\|1613190_1614525_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377164
AP019005.1\|BBG66277.1\|1606305_1608192_-\|GGDEF-and-EAL-domain-proteins	unknown	unknown	gnl\|CDD\|379843
AP019005.1\|BBG66272.1\|1600097_1600235_-\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66275.1\|1605004_1605304_+\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
AP019005.1\|BBG66281.1\|1609888_1610308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225934
AP019005.1\|BBG66266.1\|1594027_1594282_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
AP019005.1\|BBG66271.1\|1599694_1599838_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66283.1\|1610843_1611029_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66279.1\|1609002_1609134_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66282.1\|1610531_1610693_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66280.1\|1609140_1609866_-\|NAD-dependent-protein-deacetylase-of-SIR2-family	unknown	unknown	gnl\|CDD\|234777
AP019005.1\|BBG66274.1\|1604070_1604985_+\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694

Protein	Function_ID	Function_description	E-value
AP019005.1\|BBG66281.1\|1609888_1610308_-\|hypothetical-protein	gnl\|CDD\|225934	COG3399, COG3399, Uncharacterized protein conserved in bacteria [Function unknown].	5.38718e-08
AP019005.1\|BBG66273.1\|1600712_1604102_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	1.98424e-50
AP019005.1\|BBG66270.1\|1598763_1599447_+\|Orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.81212e-109
AP019005.1\|BBG66268.1\|1596069_1598028_+\|acetyl-coenzyme-A-synthetase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
AP019005.1\|BBG66284.1\|1611124_1613197_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.70619e-56
AP019005.1\|BBG66285.1\|1613190_1614525_+\|hypothetical-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	3.91355e-06
AP019005.1\|BBG66277.1\|1606305_1608192_-\|GGDEF-and-EAL-domain-proteins	gnl\|CDD\|379843	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain. This domain is the N-terminal periplasmic domain of the LapD and MoxY receptor proteins.	1.89544e-29
AP019005.1\|BBG66275.1\|1605004_1605304_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.48091e-21
AP019005.1\|BBG66267.1\|1594486_1595677_+\|NADH-dehydrogenase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.60299e-95
AP019005.1\|BBG66266.1\|1594027_1594282_-\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00144497
AP019005.1\|BBG66278.1\|1608188_1608818_-\|FIGfam010717	gnl\|CDD\|226198	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General function prediction only].	3.35043e-24
AP019005.1\|BBG66280.1\|1609140_1609866_-\|NAD-dependent-protein-deacetylase-of-SIR2-family	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.56799e-78
AP019005.1\|BBG66274.1\|1604070_1604985_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	9.49022e-91

>AP019005.1|BBG66275.1|1605004_1605304_+|CRISPR-associated-protein-Cas2
MFDLPTQTKKERKRYRWFVNFLDKEAYIRLQYSVYAKVFNSLESANYGKKRLKEFLDINVKKGNVRIILFTDSQFGKMEIIVGESTPQQEQAERSLFDF
>AP019005.1|BBG66274.1|1604070_1604985_+|CRISPR-associated-protein-Cas1
MAAWKTIRITKPCRLSIENGNLVVEDETMRVKLSLPDTDSIIFEGDRFTISAKVLAALSRHKVATLFCDEYYMPTAILHPYHQSSLATKTLKAQLSMPDELRDRIWQEIVRVKILNQSSVLRNFSKMYTKLETYADHIRPGDPYRAEAKSARLYWKELFTDLKREADSLDVRNQALNYAYAILRSLVTRDLSAAGFLPALGLCHDNRYNAFNLSDDLMEPFRPIVDAALYFLLQRYEEEQLNPEFKKAIISIFDSEYVVYEAGLSAIRTVSTRYIHGFKATVKSANIESLHFPTIDFKALRECF
>AP019005.1|BBG66273.1|1600712_1604102_+|CRISPR-associated-protein,-Csn1-family
MGRKIFALDLGITSLGYSILEEVEQNSYHCIDNSVILRDSPFDDKGNSKQMIRRAHVGARNLNKKRKYRIIKVAKTLENFGVLDFGEAMKVQKENRIINKWKLRAEDAFSRPLSHEELFALFSHMAKHRGYKSIATKDLIYELEAELDLTGEQSSSANLDDESRKIYGALNKLEKLKKRYPSETIAQVIHRAVQSGELHSYRNHDDYEKMIRREDIEREIESVVLHQYKLGAIDIPEEKISELIGELNSCITKQEMPTIDESLFGKCTFYKDETAAPRYSYLYDLYRLYKKLADLRIDDYEVTRNDRERIIEWVEEKISSGKSIKKITYRDLRKILGLSPEQKIFGQDDEQIIKGKKEPRTFLPFFFLADIKKFKDLFSSIQRHPDSRQIFRRIADILQRSKTPREALDRLRILMADEGIEAPDRELLELFKNKKAGTQELSHRFICEALPLFLEGYDEKEIQKLLGFTDTEDYSRYPKSLRHLHLGEGNLFEKEEGVINNHAVKSLASWALGITADLSWRYGPFDEIILETTRDALPEKIRKQIEKAMGEREKILEKIIEKYKKEFPFIDKRLARKIRLWEHQKGLDLYSGDMINLTQLLDGSADIEHIVPKSLGGLSADYNTVVALKNTNAAKGNRLPGDWLAGNSDYRKRVEMLFEKGLIDWKKCKNLLAVSLDEIYTENIHSKGIRATSYLEALVARLLKRYYPFPDPELRKNGSGVRMIPGKVTSKTRSLLGIKSKSRETSFHHAEDALILSTLTRGWQNRLHRMLRENYGKSEAELKEIWKKYTPHIDGLTLADYIDEAFNRFMSKGEDSLFYRDMFGGIRSVSYWVNKKPLSASSHKESVYSSRHDVPTLRKNILKAFDELNVQKNRHKLTAEEFMKLYDKKIRQKLWLHHIGNTNDESYRAVESRAARIAQTLTRYQLMDAKGDKEIDEEFKQTLKELVESPIEVNGKQLRKMRFYTNERVFQINRGAVVSDKNMIGVQITKGRKKKIIIRRMDVNNAIELQKEKSSMLCYLNETLFIFNKSGLVHYGCLRSYLENKQGAKLIALFNPRFPANPKAQPLKFSDNNQIKQVSIGSATGVIKAHLDLDGRVKSFEVFGMLPEGAVGWFKKESGYGSLEDDPHH
>AP019005.1|BBG66272.1|1600097_1600235_-|hypothetical-protein
MSMIAVFKLECLEIKHYLNHFALKTKVLVKANLAAMTELKRLRLA
>AP019005.1|BBG66271.1|1599694_1599838_+|hypothetical-protein
MKILDKVELIVKLKEKIEEAKKENAKAAERLQGLLESIMKSGELKAV
>AP019005.1|BBG66270.1|1598763_1599447_+|Orotidine-5'-phosphate-decarboxylase
MQLCVALDLPSLKENLKLAEELKEFDIWLKVGFRSFIRDGRESLDALKQINPSFKIFLDLKLYDIPNTMADAAEEIAKMDVDMFNIHASAGKKAMQEVMRRLEPLKKRPLVLAVTALTSFDYRSFKEIYGEDIEEKAKQFAMQSYQAGLDGVVCSVYESDLIKHETDPEFITLTPGIRPFGESGDDQKRVADLKTAIEHKVDIIVVGRPIYKAEDPAEVVKRVLENT
>AP019005.1|BBG66269.1|1598032_1598722_+|hypothetical-protein
MKLWIALLLPILLFTGCNEKTEKGKEFAFSVLIPQPAAGQSVHYIHGKQVFTSLSGDSAVSAMVINNPIMAGREAILAIAIENRTDGTIELKWDDITFFNPKNYIKLLPVSEIEEYFKKPNRCKPMLNAKAFRRELEKYGVFHDPALDTQKRELFPSEAALLDIFKEIKEDLCYTRLPNNTTLEQHKVTVGYMVILLPAENFERRMLFMLKIPAAGTLHKLRYALQPLQ
>AP019005.1|BBG66268.1|1596069_1598028_+|acetyl-coenzyme-A-synthetase
MSESKELYFPNREFAKEARIKNMCEYRELMEWAKEDYEGYWGHWADEKIDWFEPYTKVLDESDAPFYKWFTGGRLNVSYQCIDRHLDTRKNKAAIIFEGDRGDKQIITYLELYRNVNRFANLLKNRFGVKKGDRVVLYMPMIPEAAYAMLACARIGAIHSVVFGGFSAEALRDRIIDADAKVVITADGAFRKDKPYMLKPVVDTALEEGCESVEKVLVVQRNNEDVVWIEGRDYSYNELIDQESDVCDPEPMESEDPLFLLYTSGSTGKPKGVQHSQAGYILWAQMTMEWVFDVKENDTYWCTADIGWITGHTYIVYGPLAMGATTVMFEGVPTYPDAGRAWKMVEEYRINQFYTAPTAIRVLHKMGEDEPQKYDLSSLKVLGTVGEPIDPPAWKWYFEKIGGGRCPIVDTWWQTETGGHMISPLPGATPIKPACATFPLPGIMAEVIERDGTPVEPGEQGLLCITKPWPSMIRTIWGDPERFKKSYFGDAKKDGKPVYFSGDGAIVDEDGYITITGRVDDVINVSGHRMGTAEVEAAIKKHPHVAEVAVVGKPDPIKGESIFAYIVLKNADDTFGEEAELAKEINEVIAREIGNIAKCDTIKVVPGLPKTRSGKVMRRILRAIAKGEEIKQDISTLEDPSIVAKIQTCVIG
>AP019005.1|BBG66267.1|1594486_1595677_+|NADH-dehydrogenase
MKRVVIAGAGYGGLRAVERLAELPGIEITLVDANSFHFMQTEVYGYIAGTKDIDELAIDLGLWCSGFDRPVKFVKDRIKGLEPEKRLLLLQNSTLEYDYLIIATGARTGFPGFIEGLREFSFGIKRVDRAFGFHHRFESVVKKKLDGERGDVNIAVIGAGLSGVEVAAEMGYMLKRYRYMLGERADDIRITLVDACETILPGMHPYLVKSASQRLEKLGVTVKTSAFIDRVSKDLIHFKNGDEMEHTFTIFTGGITANSDFTPESFKKGDNGQLEVTNSLNIPGYEEIFAIGDVALIKDENAKPLPPTAQIAEKSAEYAAKSIKNALEKRRTEPFRGRLDGMFIALGGRYAAAEIFGFRFSGAAAYYMKRLITFIYFLGINLRANAGYRVRRRPHR
>AP019005.1|BBG66266.1|1594027_1594282_-|hypothetical-protein
MKVSDIFNIVHNALEAKNHGRKISQKAMAEELGISMRTYQDWRTGKAQPVAARALMQMLGELDDDEIVRVVHKIRALDEQSDSK
>AP019005.1|BBG66277.1|1606305_1608192_-|GGDEF-and-EAL-domain-proteins
MTLFKKMTLMFSLFFLTILALVLAINFSESKEYVQDELYAKAVNGSATLAVSMSQSGGDVVKLSTIADAVFDTGYFRKIELKDMRGRSLFVKTKERSSAVPKWFLTVAALKAPKAAAQVSAGWKPLGILEVTSDTSLAEEYLYSLFLKLIGLFLVLGIAGIALIALLVRSLLEPIKKLRIQAEGVLRNRFSVNEERSSIAEIDSVTEVMNRLVGSMEQMHDRLLQLTRKNAELEYRDRLTSLFNRRYFIIKYEEYINGGHNLDNGAVVVMRLCGTKSANSIVGYDVVDGIFREIALKGAETVNGREESVAVRLSGIEALYLLPGVASDKAKEAADRALAEAREIVDGYDEVKEILYVCVAVVHYGKEKSLEELLASVDLALEDARSQNRDCVKTVEYEKRTPTRKSLWRSLLSEAFDRRRLIPVCKEMGGEKAGRPDCLVTFDLPLQNGDTVPYEIYAPMLGAVGLLERYLHYALERVVEDGTFVNKKAALPITLSFLDTTHEMDRLLESAKRLDSCGRGLVAELAQNDILKYETRTVERLVQKLKRGGVDVGISGFDADEKMLELLKTVQPLYLKMGATRFLDMSDSFRESLMLLVKSVESLLYIENVESEELRAKIERLGCDVEVL
>AP019005.1|BBG66278.1|1608188_1608818_-|FIGfam010717
MTALLSVLYITAIAAASSAVEKRLKKIEREYGHSTADRFRYYYKFLDSAKDLPERKLLIEVNDFWNGVRYAGDITVWGKKDYWATPYEFLLRGRGDCEDYVIAKYFTLKKLGIDTKRLYFVYVRVKGYKLPHMVLAYFETPESDPLVLDSLNLKIFRASERKDIIPVYTFNGELLQRFKDRSVEGLGDKNSMVKLKWDDLIERIKKEPL
>AP019005.1|BBG66279.1|1609002_1609134_+|hypothetical-protein
MPHRNLKITILYRYTYAENKLSRNFFASHISVDSFLFCRYGSR
>AP019005.1|BBG66280.1|1609140_1609866_-|NAD-dependent-protein-deacetylase-of-SIR2-family
MKKVLIFSGAGLSAESGIRTFRDSDGLWEEYDVMQVCSTQGWEEDRALVTRFYNDRRKDLESRSPNPAHYAIAGLEKRFGGQIWNLTQNVDDLLERAGCRNVIHLHGTLRDLRCESCGHIWDIGYREQREDEECPGCGSRHVRHNVVMFGEPAPAYRFIQRAVDESGLFVAIGTSGQVIDIVPMATEFSHSILVNPKREMYVTSFGSHERYIDEYFETFIQKKAGEAASEFEKIVSDFLSV
>AP019005.1|BBG66281.1|1609888_1610308_-|hypothetical-protein
MFYTTIHTIHLLAAFTYGGFLFVDILFLTKMQKTLGGEKGAECREAIMIHVRKVVPYALFTVVGTGIIMFPYVFGTVGEDGMTNMQMVLLFKAFLGLWLGLRGFMQKVFKINPWLFKSHYFPFTLVVIIIILSQIMWVV
>AP019005.1|BBG66282.1|1610531_1610693_+|hypothetical-protein
MPKKQPEDIGCENPECIKKDECKRQVIAKNGTAREVRKFGGTAEKGCGQFIQK
>AP019005.1|BBG66283.1|1610843_1611029_+|hypothetical-protein
MPQSPKEYLYNFCIGAYLLKIKKNGEVYIKKPSIIETDLQKSCPFWIFSTLPTIQMKICIF
>AP019005.1|BBG66284.1|1611124_1613197_+|TonB-dependent-receptor
MLKKGLLPLSIFAASVLAQGPVEDLAPVSVIATGEEEPVVEQPVSISVKESAEIELDQVIFQKDLLNSLAGVRIEQTGSVFGHMTSIRMPINTGPYYLFMQDGIPVQSSGFFNHNGLAYTTFGSSTSVEVLKGAGTALYGSDAVAAVVDVKSLAAPSEKRESNIKAMGGSYGYGSLSAETSGPAGENGGYRTNAKFLHSDGWRDHTTSERGELNFRYDTPLNDDNLLKVIFNASKTDAEQADSFNDYANIENGSTAASDDPNYFKALELTDVRRKFDYARLSAEWSNYSYENLELSLTPYLRYNRNRYVATWNANLPRNDNKLATVGLMQKGRYDTSWGRVIGGIDAEYTKSDLKYTQDFDINVTSWSGTTTYLAGDLYDYNVDYIAVAPYIHADVNLGEEMVATFGLRYDYNRYDYKNNLAPDSYDASGKYFRPADRTDNFSHLSPKFSLSYRPDRSTNVYLRYANGFRIPQASRLYSMQKGYEEVVLDPETSNTFEIGYKKLFENRSYVEISAYYMTIDDTITRYKNDVTGDYYYANGGSTLHRGIEFTLTAKMSEEWSSKIAYSYSRHNYRDDPVYGSNEMQQAPNHLGNLRLIYSPLALKGLKIMGEYVYVGPWWLDDEHTAGKYEGYSTGNLKAEYRYDYNWKFFTKITNITDERYASRARYAWGKTDYTPGDPREFYAGLEYRW
>AP019005.1|BBG66285.1|1613190_1614525_+|hypothetical-protein
MVKLFKIHKLSGLAAGALLLLLAVTGLFLDHDKWQFLYSTTFTYTPEPLEEWNNRLFEGYHYDPENSGRIIACSKRGIFESPDNGLSFERRFDGICLGLRSDKERLVAATNDGIYSLENGEFRPFALRGAYVNALSIYNDRIFAAVDKHTLYLIDADDGKVLKVSTSELDKNDLKAPVTLSRFVRDLHYGRGYFDGDISLYINDYAAVILAWLGLGGYIIWWKIGQKRGAKTIRALIKSHANIFTVAAAAPLLVLLVTGIFLDHSSSLAGFMRSVKVPSVLLPPVYGSLRHDIWSVDFDGNMFRIGNRYGVFKSDDLKEWKLENRGFAYRMIRKGQKLFVSGMGAPNRLFENGEWKILPKSPHMFKDLYFKDGKVHYFSTRNTKEPLPKFEDITLYSLLLALHDGTFFASWWVWLNDAAAIALLLLLFTGILRWRARKRPKRPI
>AP019005.1|BBG66286.1|1614517_1614727_-|hypothetical-protein
MPHHKHHEKLERVKEAIKNSKELSEEQKSNALAHIEEWYEEDKAFGALIEALIEKFSELEPIFAELGLI

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Crispr_ID: AP019005_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019005_3

1932552-1933279

TypeI-E

I-E,II-B

Consensus_repeat	Method
CGGTTCATCCCCACGTCCGTGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCACGTCCGTGGGGAACAC	CRT
GGTTCATCCCCACGTCCGTGGGGAACAC	PILER-CR

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of AP019005_3

>merge|AP019005|3|1932552-1933279|CRISPRCasFinder,CRT,PILER-CR
TGTGTAAACACCACATCCGTGGGGAACACTTAATGGTCGATAGTCAATAGTCAATAGTCAATAGTCAATAGTCAATAGTCGATGGTCGATGGTTCATCCCCACGTCCGTGGGGAACACGGCGACGCCAATCCGGCTCTGGTCACACGGGTCGGTTCATCCCCACGTCCGTGGGGAACACATCTCGTCAGTTCCGTTACCAGGGAAAATATTCGGTTCATCCCCACGTCCGTGGGGAACACTGGATGGTGACTCCCATACTCACCTCCTTTTCCGGTTCATCCCCACGTCCGTGGGGAACACGATATTCCCCATAGTGAAGAGCTGAACTGGGTCGGTTCATCCCCACGTCCGTGGGGAACACTTCCGACCAAGATGAAACATACCATATCCCATCGGTTCATCCCCACGTCCGTGGGGAACACATAGAAATCTTTTACTAGGCGCAACCCCTCGTCGGTTCATCCCCACGTCCGTGGGGAACACGTACCATCTAGGCATTGCGCCGCTAATGGGTAAGGTTCATCCCCACGTCCGTGGGGAACACATTCCCTGTTCTGACCGGAACCAAAAGTTTTGCGGTTCATCCCCACGTCCGTGGGGAACACAGAAAACGTAGGATTATGTTTTGAGAATCAGGCGGTTCATCCCCACGTCCGTGGGGAACACTGAAAAAGTATTGGTAAGGCTGTTGAACTGGTCGGTTCATCCCCACGTCCGTGGGGAACAC

>AP019005|3|3|1932552-1933279|CRISPRCasFinder
TGTGTAAACACCACATCCGTGGGGAACAC	TTAATGGTCGATAGTCAATAGTCAATAGTCAATAGTCAATAGTCAATAGTCGATGGTCGA
TGGTTCATCCCCACGTCCGTGGGGAACAC	GGCGACGCCAATCCGGCTCTGGTCACACGGGT
CGGTTCATCCCCACGTCCGTGGGGAACAC	ATCTCGTCAGTTCCGTTACCAGGGAAAATATT
CGGTTCATCCCCACGTCCGTGGGGAACAC	TGGATGGTGACTCCCATACTCACCTCCTTTTC
CGGTTCATCCCCACGTCCGTGGGGAACAC	GATATTCCCCATAGTGAAGAGCTGAACTGGGT
CGGTTCATCCCCACGTCCGTGGGGAACAC	TTCCGACCAAGATGAAACATACCATATCCCAT
CGGTTCATCCCCACGTCCGTGGGGAACAC	ATAGAAATCTTTTACTAGGCGCAACCCCTCGT
CGGTTCATCCCCACGTCCGTGGGGAACAC	GTACCATCTAGGCATTGCGCCGCTAATGGGTA
AGGTTCATCCCCACGTCCGTGGGGAACAC	ATTCCCTGTTCTGACCGGAACCAAAAGTTTTG
CGGTTCATCCCCACGTCCGTGGGGAACAC	AGAAAACGTAGGATTATGTTTTGAGAATCAGG
CGGTTCATCCCCACGTCCGTGGGGAACAC	TGAAAAAGTATTGGTAAGGCTGTTGAACTGGT
CGGTTCATCCCCACGTCCGTGGGGAACAC

>AP019005|3|2|1932552-1933279|CRT
TGTGTAAACACCACATCCGTGGGGAACAC	TTAATGGTCGATAGTCAATAGTCAATAGTCAATAGTCAATAGTCAATAGTCGATGGTCGA
TGGTTCATCCCCACGTCCGTGGGGAACAC	GGCGACGCCAATCCGGCTCTGGTCACACGGGT
CGGTTCATCCCCACGTCCGTGGGGAACAC	ATCTCGTCAGTTCCGTTACCAGGGAAAATATT
CGGTTCATCCCCACGTCCGTGGGGAACAC	TGGATGGTGACTCCCATACTCACCTCCTTTTC
CGGTTCATCCCCACGTCCGTGGGGAACAC	GATATTCCCCATAGTGAAGAGCTGAACTGGGT
CGGTTCATCCCCACGTCCGTGGGGAACAC	TTCCGACCAAGATGAAACATACCATATCCCAT
CGGTTCATCCCCACGTCCGTGGGGAACAC	ATAGAAATCTTTTACTAGGCGCAACCCCTCGT
CGGTTCATCCCCACGTCCGTGGGGAACAC	GTACCATCTAGGCATTGCGCCGCTAATGGGTA
AGGTTCATCCCCACGTCCGTGGGGAACAC	ATTCCCTGTTCTGACCGGAACCAAAAGTTTTG
CGGTTCATCCCCACGTCCGTGGGGAACAC	AGAAAACGTAGGATTATGTTTTGAGAATCAGG
CGGTTCATCCCCACGTCCGTGGGGAACAC	TGAAAAAGTATTGGTAAGGCTGTTGAACTGGT
CGGTTCATCCCCACGTCCGTGGGGAACAC

>AP019005|3|3|1932642-1933279|PILER-CR
GGTTCATCCCCACGTCCGTGGGGAACAC	GGCGACGCCAATCCGGCTCTGGTCACACGGGTC
GGTTCATCCCCACGTCCGTGGGGAACAC	ATCTCGTCAGTTCCGTTACCAGGGAAAATATTC
GGTTCATCCCCACGTCCGTGGGGAACAC	TGGATGGTGACTCCCATACTCACCTCCTTTTCC
GGTTCATCCCCACGTCCGTGGGGAACAC	GATATTCCCCATAGTGAAGAGCTGAACTGGGTC
GGTTCATCCCCACGTCCGTGGGGAACAC	TTCCGACCAAGATGAAACATACCATATCCCATC
GGTTCATCCCCACGTCCGTGGGGAACAC	ATAGAAATCTTTTACTAGGCGCAACCCCTCGTC
GGTTCATCCCCACGTCCGTGGGGAACAC	GTACCATCTAGGCATTGCGCCGCTAATGGGTAA
GGTTCATCCCCACGTCCGTGGGGAACAC	ATTCCCTGTTCTGACCGGAACCAAAAGTTTTGC
GGTTCATCCCCACGTCCGTGGGGAACAC	AGAAAACGTAGGATTATGTTTTGAGAATCAGGC
GGTTCATCCCCACGTCCGTGGGGAACAC	TGAAAAAGTATTGGTAAGGCTGTTGAACTGGTC
GGTTCATCCCCACGTCCGTGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
AP019005.1\|BBG66617.1\|1938127_1938604_-\|CRISPR-associated-protein,-Cse2-family	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
AP019005.1\|BBG66607.1\|1928902_1930096_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224748
AP019005.1\|BBG66599.1\|1918069_1921162_-\|acriflavin-resistance-protein	unknown	unknown	gnl\|CDD\|223911
AP019005.1\|BBG66600.1\|1921228_1922080_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225543
AP019005.1\|BBG66601.1\|1922076_1922889_+\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|213994
AP019005.1\|BBG66618.1\|1938600_1940082_-\|CRISPR-associated-protein,-Cse1-family	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
AP019005.1\|BBG66604.1\|1924916_1925582_+\|putative-two-component-regulator	unknown	unknown	gnl\|CDD\|223816
AP019005.1\|BBG66610.1\|1933615_1934446_-\|mobile-element-protein	unknown	unknown	gnl\|CDD\|372671
AP019005.1\|BBG66606.1\|1926866_1928678_-\|chaperone-protein-HtpG	unknown	unknown	gnl\|CDD\|235366
AP019005.1\|BBG66613.1\|1934831_1935746_-\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
AP019005.1\|BBG66614.1\|1935745_1936249_-\|CRISPR-associated-protein,-Cse3-family	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
AP019005.1\|BBG66611.1\|1934439_1934703_-\|mobile-element-protein	unknown	unknown	gnl\|CDD\|366690
AP019005.1\|BBG66608.1\|1930092_1931481_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|206740
AP019005.1\|BBG66612.1\|1934725_1934851_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378244
AP019005.1\|BBG66603.1\|1924537_1924684_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66605.1\|1925578_1926835_+\|putative-two-component-sensor	unknown	unknown	gnl\|CDD\|223715
AP019005.1\|BBG66616.1\|1936999_1938124_-\|CRISPR-associated-protein,-Cse4-family	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
AP019005.1\|BBG66609.1\|1933339_1933522_-\|CRISPR-associated-protein,-Cas2	cas2	cd09755_cas2_CAS-I-E	gnl\|CDD\|236930
AP019005.1\|BBG66615.1\|1936325_1937000_-\|CRISPR-associated-protein,-Cas5e-family	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|378243
AP019005.1\|BBG66602.1\|1923000_1924431_+\|glutamine-synthetase-type-I	unknown	unknown	gnl\|CDD\|273198

Protein	Function_ID	Function_description	E-value
AP019005.1\|BBG66617.1\|1938127_1938604_-\|CRISPR-associated-protein,-Cse2-family	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.90951e-32
AP019005.1\|BBG66607.1\|1928902_1930096_-\|acyltransferase-family-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	4.61995e-17
AP019005.1\|BBG66599.1\|1918069_1921162_-\|acriflavin-resistance-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	8.92754e-157
AP019005.1\|BBG66600.1\|1921228_1922080_+\|hypothetical-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.13603e-62
AP019005.1\|BBG66602.1\|1923000_1924431_+\|glutamine-synthetase-type-I	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
AP019005.1\|BBG66618.1\|1938600_1940082_-\|CRISPR-associated-protein,-Cse1-family	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.72176e-81
AP019005.1\|BBG66609.1\|1933339_1933522_-\|CRISPR-associated-protein,-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.57425e-29
AP019005.1\|BBG66606.1\|1926866_1928678_-\|chaperone-protein-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
AP019005.1\|BBG66613.1\|1934831_1935746_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.08712e-146
AP019005.1\|BBG66614.1\|1935745_1936249_-\|CRISPR-associated-protein,-Cse3-family	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.51805e-45
AP019005.1\|BBG66611.1\|1934439_1934703_-\|mobile-element-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	7.44098e-14
AP019005.1\|BBG66608.1\|1930092_1931481_-\|hypothetical-protein	gnl\|CDD\|206740	cd09913, EHD, Eps15 homology domain (EHD), C-terminal domain. Dynamin-like C-terminal Eps15 homology domain (EHD) proteins regulate endocytic events; they have been linked to a number of Rab proteins through their association with mutual effectors, suggesting a coordinate role in endocytic regulation. Eukaryotic EHDs comprise four members (EHD1-4) in mammals and single members in Caenorhabditis elegans (Rme-1), Drosophila melanogaster (Past1) as well as several eukaryotic parasites. EHD1 regulates trafficking of multiple receptors from the endocytic recycling compartment (ERC) to the plasma membrane; EHD2 regulates trafficking from the plasma membrane by controlling Rac1 activity; EHD3 regulates endosome-to-Golgi transport, and preserves Golgi morphology; EHD4 is involved in the control of trafficking at the early endosome and regulates exit of cargo toward the recycling compartment as well as late endocytic pathway. Rme-1, an ortholog of human EHD1, controls the recycling of internalized receptors from the endocytic recycling compartment to the plasma membrane. In D. melanogaster, deletion of the Past1 gene leads to infertility as well as premature death of adult flies. Arabidopsis thaliana also has homologs of EHD proteins (AtEHD1 and AtEHD2), possibly involved in regulating endocytosis and signaling.	1.80367e-19
AP019005.1\|BBG66612.1\|1934725_1934851_-\|hypothetical-protein	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.7118e-11
AP019005.1\|BBG66604.1\|1924916_1925582_+\|putative-two-component-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.07219e-73
AP019005.1\|BBG66605.1\|1925578_1926835_+\|putative-two-component-sensor	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.76719e-27
AP019005.1\|BBG66616.1\|1936999_1938124_-\|CRISPR-associated-protein,-Cse4-family	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.34919e-129
AP019005.1\|BBG66610.1\|1933615_1934446_-\|mobile-element-protein	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.01548e-29
AP019005.1\|BBG66615.1\|1936325_1937000_-\|CRISPR-associated-protein,-Cas5e-family	gnl\|CDD\|378243	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.	8.21835e-50
AP019005.1\|BBG66601.1\|1922076_1922889_+\|histidinol-phosphatase	gnl\|CDD\|213994	cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase of Hisj like. Bacillus subtilis YtvP HisJ has strong histidinol phosphate phosphatase (HisPPase) activity. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	2.35606e-103

>AP019005.1|BBG66608.1|1930092_1931481_-|hypothetical-protein
MTPKERYRKLKQHLSEENPVLLNVIERYETLDKIAHTHGFLDPEDTYTAHISWWPLISILGTFSSGKSTFINQYLGRKVQSTGNQAVDDKFTVICYGSAEDVTTLPGLALDADPRFPFYNISEEVEKVDAGEGSRVNLYLQLKTVRSDAVKGKILIDSPGFDADSQRDAILRITSHIIDMSDLVLIFFDARHPEPGAMRDTLEHLVGAAISHRDANKILYILNQIDTTAKEDNLEDVIGSWQRALSQQGLVSGNFFAIYSEEAMVPIDDEALAERMKRKRDEDLRQIVERMDKVGIERAYRITKALEDFAREIKDRKLPALQSALKKWLRGVAVVDAVLFLLLFAGIGVLEWQFGFVSSISGSPLSLGASVAVLLSVLAILHFKVRNFVGRRIYRKLEAGDAALAQAFLRNTRWYRPIFRAGMSGWIKRAQQRLEEVINQSRRSIQKLNDQFVSPSGKNENI
>AP019005.1|BBG66607.1|1928902_1930096_-|acyltransferase-family-protein
MNSFYFYKKEKKFYINPFLSNFLHFSRWLAAFIVVLSHVRAVTFPSYAELGKSEIVWKLFYFMTSLGHEAVIIFFVLSGFLIGGEILRGMVNQKFNWRKYTIKRVIRLYIVLIPALFLTSILDHLGYFFFNDLNGYDSFFEGGKESFGTFLLNLFMLQHSYGPLFGSNDPLWSLAYEFWYYLMFPLIATFFFSRQWKIKLLSLITLILIAMLINEKIILYFLIWLLGMAIWFIDENLLNKLPYPGFLLTALFISVVAYSRYISGFIGDLLVGIIFGLIIIYFKSIPKIPRIVERTIQTKLNAFLADFSYSLYLLHFPFMLLLVNIFYLIFYDFKKTVSYSNFLFFLCMIILIYCYSYFIYFLTEKHTKKITHIVLDNISFKVGNLARMKVLFKKILS
>AP019005.1|BBG66606.1|1926866_1928678_-|chaperone-protein-HtpG
MSKHEFQTEVNQLLHLMVHSLYSNKEIFLRELISNASDALDKLEYLKLTDEKYKELDLPSKIVISYDKEKKSLTVSDTGIGMNDEEMVENLGTIAKSGTKSFIESLTGDAKRDSHLIGQFGVGFYSSFMVAEKVEVLSRKPLEEKAWKWVSEGDGSYEIVEAEKEGYGTEITLHLRDDAVEFANEWRIKRIVEKYSNHIPFPIYLVNEKGEEEQINKASALWRLPKSELKDEDYKEFYKQISHDSEDPLLWIHTRAEGTLEYYTLFYVPKKAPIDLFRVDYQPGVKLYVKRVFITDEDRELLPTYLRFVRGIIDAEDLPLNVSREILQENIVLSKIKKASVKKILGELKKLLEKDREAYEGFFKEMGKALKEGIYSDFENRDKILDLMLFKSSSKEGYVTLKEYKESMKEGQEKIFYIMGEDENLLRHSPLLEKYREEGIEVLLFDDEVDTIVMPSVSEYDGTPLQNIANVEEESEVSEETKEKFASVIAAMKAELGDSVKDIRLTNRLKESPAVVVFDKNDPDVAMQQILRQMGQEVEPPKPILEINPGHEIFVKLLEKGDESSIREVSHIVLDEAKMAAGLEVDDIAGFNARLNRLIAKAI
>AP019005.1|BBG66605.1|1925578_1926835_+|putative-two-component-sensor
MNRHSIFFKLNLIFIFALGALIALFAMMVKEIESQEMRILEKKAIECEADIRKIIVQNGTPLKERFEEHGYTVIEHPEEINVNLRPIFQPPPPSFSPALRERIEDGRLRIYRDDSRIYFELVGPKSSRMVAAPIEVYRPKWIALFFGGMTGIIILLYWTLRRSLIPLKTLAKQIRRFGEGETDISTLSNKRDEIAFVANQFDATVKKINAMKEARTLFMRNIMHELKTPITKGKLSVALLKEEQEAKILQRAFSRMEHLIHEMAEMEMITSRSLDLKSGVCDFRSLVKDAANLLFIEEERIVVSCRSCHIEADYNMMVIVLKNLIDNAIKYGSEDKVHLSFRKGTLEVINRGEPMSESFEKLLEPFSRDENGDRRESFGLGLYIVRSILEAHGATLSHRYEKGYHIFSIDGLKTVKRK
>AP019005.1|BBG66604.1|1924916_1925582_+|putative-two-component-regulator
MINILMIEDDIDISTLLTKYLGQYGMDVHSVETPKAALNALELDHYDLIILDLTLPQMDGLELCKIIRKDHDIPIIISSARSDLTDKIIGLEYGADDYLPKPYEPRELVARVQSILRRYRPTLQPHGTDFELDESRMQITHKGEVLDLTTAEYEILRLFLLNPATVLSRDYLANNAESISWESSERTIDVIISRIRNKIGDNPKQPRYIKSIRGAGYKFTP
>AP019005.1|BBG66603.1|1924537_1924684_+|hypothetical-protein
MKEGGFSIMTIRLFALFCAVLLTIGSAMQKPDDGRDEIHSGKIPIFKK
>AP019005.1|BBG66602.1|1923000_1924431_+|glutamine-synthetase-type-I
MGKFVNNVEEFFRYCAENEVKFVDLRFTDIKGAWHHLTYLLSALDKDMLTNGLPFDGSSIEAWQPINKSDMILKPDIETAFLDPFTADPTIIVFCDVYDIYKGQMYEKCPRSIAKKALKYLEESGIGDVAYFGPENEFFIFDDVQIKDEINESYYRVDSEEGEWNDPSRNDDFGNIGHRPRTKGGYFPVAPTDSMVDLRAEMMQVLEEVGLEVVLGHHEVAQAQGEIGVKFGTLVEAADNVQKYKYVVRMVAHLNGKTATFMPKPLFGDNGNGMHVHQSIWKDGKNLFYKEGEYGNLSETARHYMGGVLKHAQAVAAFTNASTNSYKRLIPGFEAPSILTYSSQNRSASIRIPYGAGEKATRIETRFPDSSSCPYLAFTALLLAGLDGIKNKYEPVGPMDIDLFELSLDEIREKGIQQMPHTLREAVEALIKDNDFLKPVMTDDFIDTYKSYKFETQIWPDESRPTAFEFKTTYSC
>AP019005.1|BBG66601.1|1922076_1922889_+|histidinol-phosphatase
MKKMNEKRVIDLHNHTSRCNHAEGTIDDYIEKAISEGIDIFGFSDHAPMDFDPRYRMGFDEMRAYEEEVLLAKERYKERIDIRLAYEVDYLPGHIDERVLKADVDYLIGSVHFIDRWGFDNPEFIGKYAGADIDTIWQDYFDLVESMADYGKFDIVGHLDLIKVFKYVPKTDVRLIAQKAMDAIKRADMAIEINAAGFRKPIGEQYPSRELLEMAFERDIPVTFGSDAHKPEQVGYKKDEIAAFAASVGYTEAVHYIKRERYSVKFRNGM
>AP019005.1|BBG66600.1|1921228_1922080_+|hypothetical-protein
MNINEYPELGKINRLKAVRESDHGLIFASSKEKEVLLPRRYVTENMGPGSVEELFLYTDSEDRLVATTLRPFAMLGEFAVMEVVDTTPHGAFVYWGLPKDLFVPAALQRRAMKKGEKHLIYVDYDERSHRLVGVQKVERRFDRQPQRLKRNEEVDLLLFDRTELGFKALVNGRYEGLVFHSEVFSELQVGERCRGYVKKVRDDGKIDILMRPIGKKSDDLAAERIVEYLKNNRGVIPLVYKSDPERIGELLGLSRKNFKRALTLLVKKGVIEVKENGTFLRLK
>AP019005.1|BBG66599.1|1918069_1921162_-|acriflavin-resistance-protein
MRIIEYFISNRRLNHLLLLFILVAGIYSYKEMPKELFPDVTLNMIGVSGGYAGSSARILDKMAVRDIEESIEGISGIKSTETVIVPGRFDIILTLDDEADPIDVLSKVKDAVAASRQYLPADMTEPTATHLTRKRDLLSISISSERLDKESLLKEAKEIKRQIMQMPDIAEVKIYGDSDEEILLRIDSGALAAYGIDPGGFIAAISGLSYIYPVGDIEQPGDYLYLSTVHGRKDIKGWESALIEVNGRFVRLSDVAKVSRQLADTATLSSFNGRDNITLKVYKSSNGDAISLSKKLHRYVESLKKSRPEIMADIYHDTSKPIKKRLNVIISNILIGLVLIFLTMTLLINFRIAAIVTLGIPFSFAIGVIILHFMGYTINIVSLLGALIVIGIVVDDAVVVAENIQRYIDEGMERRSAVLRGVKEMVLPVTLATLTTFAAFLPLFMLSGEISHFIILIPVVVVAVLAGSLIESFLFLPLHAEELLSKGRSMVDWSPLQRLYKRSLNFCVKYKKSFLLLFAVGIPVSTYLILKSMHFQFFPSFDSNYIYVTGKLDSNTPVEHTSKVAKEIERAILKHKDELGIKSVSAVAGSRTTLGGEKESDNGAFYVTVELYDLIERDFVNRYINPLFNLSFDFNDPNKRRKLKTYELAEPLGRIVEPFRERYPMEELGVRQRHVGVIRNDIKINFSGDDEKLVEESMRLVERALEKIDGVVGISDNLKYGKREYKIKINDYGERLGLDEVKVASLLSGYFLQKRHALTFGRDGVVEIRTEDLRKDSLEELRAFQLPLKDGRFVRLDSVAEFEISRDYAQIKKRDGEVVKSVFASIDKYRTTANDVLDSLSALISKIEGEGVKVTILGEKEKNRQLAKEMKSATLLALFLILLSLLLIFSRMRYALMVISVIPFSILGALLGHLLLGINLSMASIIGILGLAGVVVNDGIIMLDFLHGTKESREFFKRAGLRLRPILITSTTTFLGLSTLIFFATGQAVILQPIAVSIGFGLLWGTILNLYYLPTLYAVVNRIEPVGRKV
>AP019005.1|BBG66609.1|1933339_1933522_-|CRISPR-associated-protein,-Cas2
MIWGTVKAGIGTGNAVMAWKTNTESGFDFMTLGKNRRIPADYDGLKLVSFLPQVEEKNIQ
>AP019005.1|BBG66610.1|1933615_1934446_-|mobile-element-protein
MVRPDQKRAAVRMMQAHNVSQRRACQEIGVSRSSMVYKPRQPFKDEVLAESVKALSEKYPRFGYRRIGVMLGWEMNETINAKRIYRLWTMLNLQLPKKRPRRRRPGTDPIKLQSGHINHVWSYDFVSDRAANGQKLKILVVVDEYTRECLALEVAASIRTHHLIDTLSRLMTLYGRPKFIRSDNGPEFTAKAVIQWLTDNDIGPAFIKPGSPWQNAYVESFNGKFRDECLNREWFYNRKEAAVIIEKWRNHYNHERPHSSLDKQPPAKVSGRKYVA
>AP019005.1|BBG66611.1|1934439_1934703_-|mobile-element-protein
MKKRFSEEQIVKILQEAERAATDQEVIRKHNISDTTFYRWKKLYGGMGVSEVKRLKELERENARLKKLLAEQILVNDALKDVVEKKW
>AP019005.1|BBG66612.1|1934725_1934851_-|hypothetical-protein
MTVIVLEAAPDALRGRLAIWMLEIRAGDLLPEIQAISRVRI
>AP019005.1|BBG66613.1|1934831_1935746_-|CRISPR-associated-protein-Cas1
MLPRLKPIPIKDRMALLFIEKCNVDVVNGAFVMITKDGVHTQIPAGSIACIMLEPGVRISHRAVELAARVGTLIVWVGEAGVRLYASGQPGGARSDKLLYQAKLALDDTARLNVVRKMYELRFGEKAPQRRSIQQLRGIEGIRVKKLYQHLANRYGIHWSGRRYDVQDWAGSDTINRCLSSATSCLYGVTEAAVLAAGYAPAVGFIHTGKPLSFVYDIADLIKFDTVVPLAFKIASDSPFNPEREVRLACRDLFRRKKVLAKLIPLIEEVLSAGGLDRPTAPPESVGPAFEEPEENIADDGYRT
>AP019005.1|BBG66614.1|1935745_1936249_-|CRISPR-associated-protein,-Cse3-family
MGGFKTYPPEKLGRVLFRLEPERRERFANLLVQSLREPDWNHLPRHSVQVETKYYNPQFRKGELLTFRLRANPVVTRNKKRYGLIRESDQRQWLLRKKIGADWQIQNIIDEGRIIGKREEKSLEFKSVRYEGYLIVSDPEKLIRSCLEGIGPAKGFGFGLLSLARMQ
>AP019005.1|BBG66615.1|1936325_1937000_-|CRISPR-associated-protein,-Cas5e-family
MPTLLMAIAGPMQSWGTRSHFTQRDTEREPSKSGIIGMVCAALGRDRNEPIDDLAGLKMGVRVDREGVVQKDYQTIQNAATAGGGRRTLTSDRWYLADAVFLVGLEGDREILEKIHKALRTPVWPLSLGRKSYVPSRSPWLLDGIRDECVSEALKNYPFLSPFAGRESLHSENDNRTEAIRFVIESKDPTPYIRQDQPISFALGKRKFASRYVEIFWENCDDIS
>AP019005.1|BBG66616.1|1936999_1938124_-|CRISPR-associated-protein,-Cse4-family
MFLNLHMIQTFPASNLNRDDTGAPKDVIFGGHKRSRISSQCQKRSIRTHPSFRRRIEESGGDLGVRTARLTERLQEIFQNAGRPDEEIEKTIEAILKAIGIKKASKSEKTQYLLFLGNKEIEELADIALDHWQEAVKDSKKPEFEKTTEKQMKTILSERAKKSGYAADIALFGRMMADDKNLNVDAACQVAHAVGTSANSLQTDFYTAVDDLLPEDESGAGMMGIIEFTSATYYRYADIDLNKLSENLGELHSDQAVAAVTGFVEAAIKAIPTGMQNSFAAHTPPKYIRLELTEAPLSLANAFEKPIPVRKDRSVERSSIEALKEEARRTEEFLGSGPKWMLEADFYDSQTLCVPALIEELQKRLAAYFSPEES
>AP019005.1|BBG66617.1|1938127_1938604_-|CRISPR-associated-protein,-Cse2-family
MSEYSFIEYLEKLEEDRGAMAALRRGLGKASGDPEMYRYVVPFLDRYRSNDWIYFTIAALYGYHHDPTIEDGRNLGASMGALERNDSLQWRFSWLLDSQSDELPSRLKSVVSLLKSKNIPIDYRRLLRDLLAWEHPDRYVQLNWARSFYQTESKNEKE
>AP019005.1|BBG66618.1|1938600_1940082_-|CRISPR-associated-protein,-Cse1-family
MNYNLIEEPWIDCTFLDGSEKSLGLMELFERAHEIRGFHTDPPLVEAVLMKIVLAISHRVLDGPADKKAWRDACKKGKYDEKRINEYFEKWYERFDLFHPLYPFMQNGKLTRQTNRSEETIEPLSISILLPHKASGNNVTLFDHTTDKSSLQLSPKESAYALMLGNNYLFGGTFKKGSDLCGWQGNCLHAPMVNGYHVFVLGDSLFETLVLNTLTPQLLGPLYSKQFGWGLPCWERDEATRCDERMPEGYLDYLTFRGRNIHLLENGGRVDHVLIACGDSFKTFFKEPFVPTKIDKKRGEIPLNLSMERLFWRDSDTLFRYNQSGFTIAPLSQLAEMGRSEARRPYRLTAYGIVNDQASPLAYVKESLPIPFSILEKAETRKKLELALSLGEEGKKVLRNAIGSFAGHLEIEAGGVKDKAETLYWQTLDGPFRRFLEMIDQSDALKSWRDVVTSSMRDAYRKTTMGFMTDKARGLEAVALGERTLYLKQRREQ

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Crispr_ID: AP019005_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019005_5

2079054-2081115

TypeIII

Consensus_repeat	Method
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CRISPRCasFinder
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CRT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	PILER-CR
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	PILER-CR

29 spacers

csx20,csx1,WYL,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

The CRISPR arrays of AP019005_5

>merge|AP019005|5|2079054-2081115|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GCCCCAATCCCCTAAATATCGGGTCTGGTTGTAATGCATTAAAATACATTTAGACCTGCGTTAATTTGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTATCGGTTATTGACTCCTGCTCAAATTGAGCAAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATAGGTGAGATCAAGAGAAATGTTGAAGTTGGAAGCGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCTAAGGAGGGTGTAAAATGAAACTGGTTTACGTTGAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATAGTAAGACTCTTTGTAGTCACACAAAGCGAGCGATAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCGCTCTGAAGAGACCGGTAGATTCGAACTCCACCAGGAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTCCACCAGGAGTTCGAATCAAAAGAAGAATTTTACGCCGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATGCAGATGGGAAAGCAAAACACGTGACGGAACACCAGTGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCCAATGACTGTTAGGAAAGACTAGCCGCCGAAAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCGTTCTTTTAGAACTACAAAGAGATAGTAAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATAGATTCCAGATTATCTTGAAATCGGGAGAAGGGCGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTCAAATAAGAGGAGAAAAAAATGAAACTAGAGTTTACGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTCAAATATCGCCTACTGACGCCGAGTCAGATAGAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATATTAGACCGAAATTAACTTAAGAAGTGTTGCAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCTTGCGTTTCTTTGACTTGATCGCTTACTTGCTGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATAACACTTGAAACAGAAAACACAAAAATGCTTGATGGAAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTAATGTACTCGTATTGCTAAACAGCGCCATATCTAACGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATATGAAACTGAAAGAATTAAATAGCAAGATTGAGAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTAGCCGCTTCCATTTTTATAGGTGTAAAAACCATATATGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATGAGTATCGAGTATATCGAAGAGACATACGGGGTGCGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATAAAAGAAGAAAAAAAAATCAAATAAGGAGATTGAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCATAATAGTTTAATCTATATTCCCTAACTTGGGAAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATATTAACGCCGAGTCAAATCGAACAATTGCTTAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTTTTAAATCCATCACGTTGATGGTTGAAACAATAAGGCGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTTAGTGGTAACAAGATGGTGCTTACACCCAAGAAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATTGTTTACACAAAGCTTACCAAGGCGGATAAAAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATGTGATAGCCGCTTAAGCAACGGCTACGGAAAACGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATGATATAATCGAAATAGAAGCTACAAACAACCCCGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCAAAGAGGAGATTGAAATGAAAACAGAACTAAAAGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT

>AP019005|5|5|2079054-2081115|CRISPRCasFinder
GCCCCAATCCCCTAAATATCGGGTCTGGTTGTAAT	GCATTAAAATACATTTAGACCTGCGTTAATTT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TATCGGTTATTGACTCCTGCTCAAATTGAGCAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGGTGAGATCAAGAGAAATGTTGAAGTTGGAAGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTAAGGAGGGTGTAAAATGAAACTGGTTTACGTTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGTAAGACTCTTTGTAGTCACACAAAGCGAGCGATA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CGCTCTGAAGAGACCGGTAGATTCGAACTCCACCAGGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCCACCAGGAGTTCGAATCAAAAGAAGAATTTTACGCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GCAGATGGGAAAGCAAAACACGTGACGGAACACCAGT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCCAATGACTGTTAGGAAAGACTAGCCGCCGAAAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCGTTCTTTTAGAACTACAAAGAGATAGTAAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGATTCCAGATTATCTTGAAATCGGGAGAAGGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATAAGAGGAGAAAAAAATGAAACTAGAGTTTAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATATCGCCTACTGACGCCGAGTCAGATAGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAGACCGAAATTAACTTAAGAAGTGTTGCA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTTGCGTTTCTTTGACTTGATCGCTTACTTGCT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AACACTTGAAACAGAAAACACAAAAATGCTTGATGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAATGTACTCGTATTGCTAAACAGCGCCATATCTAAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATGAAACTGAAAGAATTAAATAGCAAGATTGAGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAGCCGCTTCCATTTTTATAGGTGTAAAAACCATATAT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GAGTATCGAGTATATCGAAGAGACATACGGGGTGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AAAAGAAGAAAAAAAAATCAAATAAGGAGATTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCATAATAGTTTAATCTATATTCCCTAACTTGGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAACGCCGAGTCAAATCGAACAATTGCTTA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTTTAAATCCATCACGTTGATGGTTGAAACAATAAGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTAGTGGTAACAAGATGGTGCTTACACCCAAGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TGTTTACACAAAGCTTACCAAGGCGGATAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GTGATAGCCGCTTAAGCAACGGCTACGGAAAACG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GATATAATCGAAATAGAAGCTACAAACAACCCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CAAAGAGGAGATTGAAATGAAAACAGAACTAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT

>AP019005|5|3|2079054-2081115|CRT
GCCCCAATCCCCTAAATATCGGGTCTGGTTGTAAT	GCATTAAAATACATTTAGACCTGCGTTAATTT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TATCGGTTATTGACTCCTGCTCAAATTGAGCAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGGTGAGATCAAGAGAAATGTTGAAGTTGGAAGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTAAGGAGGGTGTAAAATGAAACTGGTTTACGTTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGTAAGACTCTTTGTAGTCACACAAAGCGAGCGATA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CGCTCTGAAGAGACCGGTAGATTCGAACTCCACCAGGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCCACCAGGAGTTCGAATCAAAAGAAGAATTTTACGCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GCAGATGGGAAAGCAAAACACGTGACGGAACACCAGT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCCAATGACTGTTAGGAAAGACTAGCCGCCGAAAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCGTTCTTTTAGAACTACAAAGAGATAGTAAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGATTCCAGATTATCTTGAAATCGGGAGAAGGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATAAGAGGAGAAAAAAATGAAACTAGAGTTTAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATATCGCCTACTGACGCCGAGTCAGATAGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAGACCGAAATTAACTTAAGAAGTGTTGCA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTTGCGTTTCTTTGACTTGATCGCTTACTTGCT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AACACTTGAAACAGAAAACACAAAAATGCTTGATGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAATGTACTCGTATTGCTAAACAGCGCCATATCTAAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATGAAACTGAAAGAATTAAATAGCAAGATTGAGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAGCCGCTTCCATTTTTATAGGTGTAAAAACCATATAT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GAGTATCGAGTATATCGAAGAGACATACGGGGTGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AAAAGAAGAAAAAAAAATCAAATAAGGAGATTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCATAATAGTTTAATCTATATTCCCTAACTTGGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAACGCCGAGTCAAATCGAACAATTGCTTA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTTTAAATCCATCACGTTGATGGTTGAAACAATAAGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTAGTGGTAACAAGATGGTGCTTACACCCAAGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TGTTTACACAAAGCTTACCAAGGCGGATAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GTGATAGCCGCTTAAGCAACGGCTACGGAAAACG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GATATAATCGAAATAGAAGCTACAAACAACCCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CAAAGAGGAGATTGAAATGAAAACAGAACTAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT

>AP019005|5|4|2079121-2079653|PILER-CR
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TATCGGTTATTGACTCCTGCTCAAATTGAGCAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGGTGAGATCAAGAGAAATGTTGAAGTTGGAAGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTAAGGAGGGTGTAAAATGAAACTGGTTTACGTTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGTAAGACTCTTTGTAGTCACACAAAGCGAGCGATA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CGCTCTGAAGAGACCGGTAGATTCGAACTCCACCAGGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCCACCAGGAGTTCGAATCAAAAGAAGAATTTTACGCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GCAGATGGGAAAGCAAAACACGTGACGGAACACCAGT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCCAATGACTGTTAGGAAAGACTAGCCGCCGAAAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCGTTCTTTTAGAACTACAAAGAGATAGTAAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGATTCCAGATTATCTTGAAATCGGGAGAAGGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATAAGAGGAGAAAAAAATGAAACTAGAGTTTAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATATCGCCTACTGACGCCGAGTCAGATAGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAGACCGAAATTAACTTAAGAAGTGTTGCA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTTGCGTTTCTTTGACTTGATCGCTTACTTGCT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AACACTTGAAACAGAAAACACAAAAATGCTTGATGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAATGTACTCGTATTGCTAAACAGCGCCATATCTAAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATGAAACTGAAAGAATTAAATAGCAAGATTGAGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAGCCGCTTCCATTTTTATAGGTGTAAAAACCATATAT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GAGTATCGAGTATATCGAAGAGACATACGGGGTGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AAAAGAAGAAAAAAAAATCAAATAAGGAGATTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCATAATAGTTTAATCTATATTCCCTAACTTGGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAACGCCGAGTCAAATCGAACAATTGCTTA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTTTAAATCCATCACGTTGATGGTTGAAACAATAAGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTAGTGGTAACAAGATGGTGCTTACACCCAAGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TGTTTACACAAAGCTTACCAAGGCGGATAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GTGATAGCCGCTTAAGCAACGGCTACGGAAAACG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GATATAATCGAAATAGAAGCTACAAACAACCCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CAAAGAGGAGATTGAAATGAAAACAGAACTAAAA


>AP019005|5|5|2079756-2081115|PILER-CR
	TATCGGTTATTGACTCCTGCTCAAATTGAGCAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGGTGAGATCAAGAGAAATGTTGAAGTTGGAAGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTAAGGAGGGTGTAAAATGAAACTGGTTTACGTTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGTAAGACTCTTTGTAGTCACACAAAGCGAGCGATA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CGCTCTGAAGAGACCGGTAGATTCGAACTCCACCAGGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCCACCAGGAGTTCGAATCAAAAGAAGAATTTTACGCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GCAGATGGGAAAGCAAAACACGTGACGGAACACCAGT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCCAATGACTGTTAGGAAAGACTAGCCGCCGAAAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAATCCGTTCTTTTAGAACTACAAAGAGATAGTAAGGTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AGATTCCAGATTATCTTGAAATCGGGAGAAGGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATAAGAGGAGAAAAAAATGAAACTAGAGTTTAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TCAAATATCGCCTACTGACGCCGAGTCAGATAGAG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAGACCGAAATTAACTTAAGAAGTGTTGCA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CTTGCGTTTCTTTGACTTGATCGCTTACTTGCT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AACACTTGAAACAGAAAACACAAAAATGCTTGATGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAATGTACTCGTATTGCTAAACAGCGCCATATCTAAC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATGAAACTGAAAGAATTAAATAGCAAGATTGAGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TAGCCGCTTCCATTTTTATAGGTGTAAAAACCATATAT
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GAGTATCGAGTATATCGAAGAGACATACGGGGTGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	AAAAGAAGAAAAAAAAATCAAATAAGGAGATTGA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CCATAATAGTTTAATCTATATTCCCTAACTTGGGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	ATTAACGCCGAGTCAAATCGAACAATTGCTTA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTTTAAATCCATCACGTTGATGGTTGAAACAATAAGGC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TTAGTGGTAACAAGATGGTGCTTACACCCAAGAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	TGTTTACACAAAGCTTACCAAGGCGGATAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GTGATAGCCGCTTAAGCAACGGCTACGGAAAACG
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	GATATAATCGAAATAGAAGCTACAAACAACCCC
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT	CAAAGAGGAGATTGAAATGAAAACAGAACTAAAA
GTCTCAATCCCCTCAAAATCGGGTCTGATTGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
AP019005.1\|BBG66771.1\|2081535_2081775_-\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66764.1\|2075331_2075679_-\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66765.1\|2075874_2076882_-\|hypothetical-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
AP019005.1\|BBG66762.1\|2074666_2074918_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66763.1\|2074928_2075330_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66760.1\|2072974_2074111_+\|trypsin-like-serine-proteases,-typically-periplasmic,-contain-C-terminal-PDZ-domain	unknown	unknown	gnl\|CDD\|273938
AP019005.1\|BBG66775.1\|2084350_2085241_-\|CRISPR-associated-RAMP-protein,-Csm4-family	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|224483
AP019005.1\|BBG66776.1\|2085244_2085877_-\|CRISPR-associated-RAMP-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
AP019005.1\|BBG66779.1\|2088602_2089445_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
AP019005.1\|BBG66772.1\|2081771_2082638_-\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
AP019005.1\|BBG66770.1\|2081260_2081539_-\|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
AP019005.1\|BBG66774.1\|2083058_2084354_-\|CRISPR-associated-protein,-Csm5-family	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251
AP019005.1\|BBG66768.1\|2078492_2078885_-\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66773.1\|2082634_2082907_-\|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
AP019005.1\|BBG66778.1\|2086279_2088616_-\|CRISPR-associated-protein,-Csm1-family	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
AP019005.1\|BBG66767.1\|2078079_2078496_-\|uncharacterized-protein-MJ1673	csx20	xls002255_csx20_CAS-I:CAS-III	unknown
AP019005.1\|BBG66761.1\|2074107_2074695_+\|putative-esterase,-FIGfam005057	unknown	unknown	gnl\|CDD\|182945
AP019005.1\|BBG66759.1\|2072593_2072842_+\|hypothetical-protein	unknown	unknown	unknown
AP019005.1\|BBG66766.1\|2076884_2078087_-\|CRISPR-associated-protein-TM1812	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|274040
AP019005.1\|BBG66777.1\|2085887_2086283_-\|CRISPR-associated-protein,-Csm2-family	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|187778

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
AP019005.1\|BBG66772.1\|2081771_2082638_-\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	8.2e-51	167.6	0.1
AP019005.1\|BBG66765.1\|2075874_2076882_-\|hypothetical-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	1.5e-20	68.7	0.4
AP019005.1\|BBG66776.1\|2085244_2085877_-\|CRISPR-associated-RAMP-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	2.5e-58	192.1	0.1
AP019005.1\|BBG66778.1\|2086279_2088616_-\|CRISPR-associated-protein,-Csm1-family	cas10	cd09680_cas10_CAS-III	3.9e-120	397.0	0.0
AP019005.1\|BBG66779.1\|2088602_2089445_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	7.5e-52	171.2	0.0
AP019005.1\|BBG66770.1\|2081260_2081539_-\|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	1.3e-18	61.9	0.9
AP019005.1\|BBG66774.1\|2083058_2084354_-\|CRISPR-associated-protein,-Csm5-family	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	8.3e-21	69.1	12.9
AP019005.1\|BBG66773.1\|2082634_2082907_-\|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	2.7e-12	41.6	0.0
AP019005.1\|BBG66767.1\|2078079_2078496_-\|uncharacterized-protein-MJ1673	csx20	xls002255_csx20_CAS-I:CAS-III	5.1e-42	137.7	0.0
AP019005.1\|BBG66766.1\|2076884_2078087_-\|CRISPR-associated-protein-TM1812	csx1	cd09732_csx1_CAS-III	3.5e-50	166.0	1.9
AP019005.1\|BBG66777.1\|2085887_2086283_-\|CRISPR-associated-protein,-Csm2-family	csm2gr11	cd09647_csm2gr11_CAS-III-A	4.2e-18	60.8	0.4
AP019005.1\|BBG66775.1\|2084350_2085241_-\|CRISPR-associated-RAMP-protein,-Csm4-family	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	2.1e-83	274.9	0.0

Protein	Function_ID	Function_description	E-value
AP019005.1\|BBG66772.1\|2081771_2082638_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.37922e-47
AP019005.1\|BBG66765.1\|2075874_2076882_-\|hypothetical-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	8.19386e-14
AP019005.1\|BBG66761.1\|2074107_2074695_+\|putative-esterase,-FIGfam005057	gnl\|CDD\|182945	PRK11071, PRK11071, esterase YqiA; Provisional.	1.19845e-46
AP019005.1\|BBG66760.1\|2072974_2074111_+\|trypsin-like-serine-proteases,-typically-periplasmic,-contain-C-terminal-PDZ-domain	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.65876e-90
AP019005.1\|BBG66776.1\|2085244_2085877_-\|CRISPR-associated-RAMP-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.16788e-63
AP019005.1\|BBG66775.1\|2084350_2085241_-\|CRISPR-associated-RAMP-protein,-Csm4-family	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.9955e-10
AP019005.1\|BBG66779.1\|2088602_2089445_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.67075e-11
AP019005.1\|BBG66770.1\|2081260_2081539_-\|hypothetical-protein	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	9.64374e-13
AP019005.1\|BBG66774.1\|2083058_2084354_-\|CRISPR-associated-protein,-Csm5-family	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.7599e-06
AP019005.1\|BBG66773.1\|2082634_2082907_-\|hypothetical-protein	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.25142e-08
AP019005.1\|BBG66778.1\|2086279_2088616_-\|CRISPR-associated-protein,-Csm1-family	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	7.77685e-116
AP019005.1\|BBG66766.1\|2076884_2078087_-\|CRISPR-associated-protein-TM1812	gnl\|CDD\|274040	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1812 of Thermotoga maritima, is found also in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, a large plasmid of Synechocystis sp. PCC 6803, and Fibrobacter succinogenes S85.	4.98044e-33
AP019005.1\|BBG66777.1\|2085887_2086283_-\|CRISPR-associated-protein,-Csm2-family	gnl\|CDD\|187778	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-A.	1.1188e-14

>AP019005.1|BBG66768.1|2078492_2078885_-|hypothetical-protein
MKIDPTLNREYDLRYRLPQGESLASVLKYIVEEIRRLRGALEAQQARNGRSKELPDDYYRFVAALRVYLQADTDKGVYPELSYKGLRIGCAKNGLLYEKVTGRYLPRELAFEVYRYFFENRERIEGVAEL
>AP019005.1|BBG66767.1|2078079_2078496_-|uncharacterized-protein-MJ1673
MRKMIVVFSHTLSEEQKEDARRSLGVENFIFLTEGLRAVWSSISPLADDVRPLLDGIVGFVTHHGRRGDYLLVQGDFGATCYMVEVAYNLDMIPVYAAAWREVEEYEKGGSVVTVRTFRHVRFREYLSTSKNQRSGNG
>AP019005.1|BBG66766.1|2076884_2078087_-|CRISPR-associated-protein-TM1812
MDRVLISSVGTGDIKKDSRGSYEETLYVLDGKEYRESLTSKVIISHYHIERMILIGTVKSMWDSFYVEYGGEDDEYLSLLERRKEDGSLREEDLEKLQELLNSYLGSEGSRCILIDYTRNDSEEMWENFEKLLEIRSRLDGGDRVILDITHGFRYIPILNIFLLEVLRSMDKEKFEIEAILYGMFGDNRSDIIDFKIFFDLLDWIKALNAFKEYSNADQLSLLLEKESSAKDAHRVFSQFSKNLQMANIHALWRFAKGISKKIAAIERSDNKVLKLLSEDFSDIAKRLDKETQSAFQYELAVWLYESKNYALSYIVLYEAIITKVCEQMGYDLHNHEEREEAKKHVDAPFNRFFNTKFPDSISVIRNCIVHQCEERRDMVEQDIKRLKKFLDEFRIFIER
>AP019005.1|BBG66765.1|2075874_2076882_-|hypothetical-protein
MSTAIKRKTDHIFTLMEKMAAGEELYAQNERLHDELGLEGTREAKERKIRRYLEDIHDLYGHIVVTEKRRKEFGDRKVTVYRVVDRERDVAEVFRRFIEHHDDLSWLLQVVREHNPRLLSGERKRFERLLKEEEDIFLFIGSPFETFEEGRSKEIFRQLKTAVKNREYRDIFKCTGAVEKSVKCLKLIHMADNWYLAGETEEGRFRLFRVAFIERVGYSKNRIGYQPKILDKYAHVFASLQNPMTLDRPFETARMVASAEVAYYFKEGMKPFFPTQKFLKELEDGSVEFTVSFTQPMEILPFVKQWLPHISIISPEKLKIELEKDIRSALETMEK
>AP019005.1|BBG66764.1|2075331_2075679_-|hypothetical-protein
MKCLVAVLFLPAVMFAYTKSATPPHSKWADIILKGKECSVKIRQGKHRLAEGIVKSTSGGVQKMAIIIRNKRADGDIHVESDCEILKIDFSDNAVGKPVRKVRNRVLWEWKMVRE
>AP019005.1|BBG66763.1|2074928_2075330_+|hypothetical-protein
MYHYLKWAALSLFFKRNMRYLLLILVSIAGIYISDALYEDMVRLSVISGETGKIGGYLLMKWAAVLFFAALIVWSIMRLGLGAKRSTDKKESEKTVQDDPYLKRLEKFKTKKRLRSESDMVLEAYRKEKKGEQ
>AP019005.1|BBG66762.1|2074666_2074918_+|hypothetical-protein
MQNSLIEQIKNLPNKSKERFRLKLREKAIMRTRARLIETRVDIEELSDEDLEVIIRNEEDKLLDEYKTKGIIALLALLGISWI
>AP019005.1|BBG66761.1|2074107_2074695_+|putative-esterase,-FIGfam005057
MIIYIHGFASSGRGDKALTIRRYFKKEAVAPSISYIPDLAMDTLKQLVESFSQREQVSLIGSSLGGFYAACLSEMYDLPAVLINPSTEPHITLASHTGPVTNFYDLSSFEWSERHVKELERLRPESISKPENFMLLLQKGDETLDYRVARERFQGAKIVIEEGGSHSFEGFERYLGEIESFLKRRDVAKQPDRAD
>AP019005.1|BBG66760.1|2072974_2074111_+|trypsin-like-serine-proteases,-typically-periplasmic,-contain-C-terminal-PDZ-domain
MEERFFRRLFAITFVLMTLMLFWQSLPWIGEYILAQQAEPRPVTPRGDLAEDEKATIELFERTKDSVVYIATTQAVIDPWSRNIYNIPRGTGSGFVWDEAGHIVTNYHVIAGASEARVRLSDGRDYHAVLIGASPKHDLAVLRINVPIKRPQPVMVGTSHDLKVGQKTFAIGNPFGLDWTLTTGIVSALERSMKESSGAVIRNLIQTDAAINPGNSGGPLLDSAGRLIGVNTAIFSPSGAYAGIGFAIPVDTVNRIVPKLIAYGRYLEPSLGIETDDRINRLAKARLGFSGVMILRTLPGTSAEKAGLRGITLYPDGSFDPGDIILTIEGKPVESTKDIEDLLENYGVGDTVTVEISRNGKVLKKKLILEPAYKGDRR
>AP019005.1|BBG66759.1|2072593_2072842_+|hypothetical-protein
MKPGFYRPILPWLIFAAGFLAPQLFLLYIPFAAALFGKTVIDEYGEVYLYWKERFQRAVSTPGRCGSGERERTVLKTAVEMV
>AP019005.1|BBG66770.1|2081260_2081539_-|hypothetical-protein
MSRYTADYIICYDISDGKRLRKLARELEKIAIRIQYSVFFAQSVKQEELFDIMEMIDGIIDCKEDDVRIYTVIDPGMKLGDAIDLREPVVLT
>AP019005.1|BBG66771.1|2081535_2081775_-|hypothetical-protein
MRRALIVKDPRAKIVVNETHLEISTLYDMQYIGFERIKAVYLNRSVDLSVKSLMEIFRRVPVYFIDKHGRLLAKMSRKV
>AP019005.1|BBG66772.1|2081771_2082638_-|CRISPR-associated-protein-Cas1
MKTVIVDRSDIVITAKKSGIVVETQQIPYRLIDLLVLCGEMEIGTKTLLALAKEGVSLLTVSKNNRTFSLTLPLAPKNGELKMLQYRSVTKNRLNFAKYFLEEKIKTHAKHLEKLGFEIDLRDWMQKIREAETVSQMLGIEGSFSNIYFSRYFSVLPKALHKSRRSKRPPLDPVNAILSYLYTYFYHLITVRLHMNGFDPAISYLHEPFRSHNGLSSDILEVFRAKINEKTAEWFLEKYLKAEDFSKRDGVYLRFESRKRLWREIKTFGEDLLPSINDEIALLRSAIT
>AP019005.1|BBG66773.1|2082634_2082907_-|hypothetical-protein
MSGHYLIAYDVRSSKRRRRCAKVAYSYALGGQKSALESLLEPKELPVVLDELLDSIDPEEDRVHLVHVMPKAILLGRAKQINYENGAILI
>AP019005.1|BBG66774.1|2083058_2084354_-|CRISPR-associated-protein,-Csm5-family
MRHYLQLTTLSPLHIGSGEDFVPTAYIIDGDTLYEFDETDFFHALSAAQKRAFENMAGQGLYALKRFYDIEKDLAKSIAYRKLPVSREISKIYTRQFNKDGTLNKNLLEISKTMTMPGSFLSYIPGSSIKGVFGTALGIYPGRVGNDVRQNLLVEDFFPTQADVTFCDVAERRHKFKDAPGRGIPIKIEIIKEGVSFFGSILSERRGESKQLFSIEDIARSLERFDMQADEKMFAKYKRRADALGADFLFRVGRFAGKNFTSVNPDKIPVTHTVIASKEGGYTPFGWVAAKILDEEGYREASAEYERVLRELIKKRTAYAKEWRESRIQKEKERNEKELKMRREEEEKAERKRAEAQRLASLSPVERLIETVEIPELIRKMQNGEIENYESIKVELAQKIKAKLLENPKTWEKAKQKALKRRVFIESILGE
>AP019005.1|BBG66775.1|2084350_2085241_-|CRISPR-associated-RAMP-protein,-Csm4-family
METVRAQIEPLSEFGTPLRGDTLFGQICWTIALLDGEERLKSLLDDYDRNPFLIVSDPFPPGLLPKPAMPYFQLGEDPEERKINRDKRWISMSDLKAGRFNEALSNHEAGLGDVSTVTLHNSLDYRSFKTGGAQFAPFGEKRYLLGKKEIYLMFDRSKAASEDVHRWLEAVGLYGYGKDASIGKGRYSLVETETVELPMEGERFMTLSPASLEGVEAVNVRYRPMTRFGKHGGKRARGKVFKKPLLLADTGAVLDFDSPRTLPYAGKAIRGHSSAHPDTVHQGYAVTVAIGKGDAS
>AP019005.1|BBG66776.1|2085244_2085877_-|CRISPR-associated-RAMP-Csm3
MEIIQLKGQIELLSGLHIGGGDDTMKIGGIDNSVIKDANSGHPYIPGSSLKGKMRSLLEHHLRLVYLPSADGSPFGSRLMDEVPEGVKRDARTLLELFGDPNPESPYGITRISVGDCHLCEESKEMELSEAKFENSINRKGGTALNPRQTERVPAGVKFNYDIRIKVFDGDDREALEKMVETAISLVEKDYLGGNGSRGYGRVRFIPQSE
>AP019005.1|BBG66777.1|2085887_2086283_-|CRISPR-associated-protein,-Csm2-family
MKPIELDYRKDPELFNETAKSWADAICQDNQKKNGDCGVKSTQIRNFYEKVLELNRKVENREKDFEDILPFVKMLNSKVEYALHRKGDGGTLVNKSFADMMKRCISQVDSPEKLRNFKLFFEAVLGFYKGK
>AP019005.1|BBG66778.1|2086279_2088616_-|CRISPR-associated-protein,-Csm1-family
MEKIDEIALAGLLHDIGKFGQRTDIYRLKDIFPVQRYRYTHAAYTAQILQDGGLAFKLPEEVIDMAAMHHAPDGDDAWIIAAADRMASGFEREAFEKYNEMSDREDFRKQRLWHLFDEKRRFPIAPLAPDTIYPVEKGADGNEYDALWKAFVEDMEKIEKAGSGANDYRTIDYLMKKHTSFIPSSTTFKKGDYTPVKANVPLYDHSRATAIFATAIYALYEKGDTDILDYYRHGRGDIERRNLLMVTGDFFGIQQFIFNDVPAAKASKILRSKSAYVQVLTRILALHVAEEIGMSHQSIVTTAAGKFEILAINTPETLEKVQKLQSEIDDFFIKEYFGETGVGLSCTPCALADFIVKGRYRESLRPRVAESVEEAKYRRFDLASRHPVLELDDGIDNRNLCQLCHLRKGIERESSDKTYIACGSCEKFVRIGRELATKKFLTISKGSGKIPIFGEWHLNFSEKPERFDNAVEIYDISKDPEFAGYAKWELASYVAIEDGYVSTFEELAQKSCNGDPDYGLKALAALKGDVDNMGCYIRNSDVTASFARYNFFSRMIDYFFSVESARLMEGRPMYTVFSGGDDIFILGAWDEVVEFSRELHEDFTRFAAKSGLTFSAGIVVTKPNKPVNFIAEAAESALEASKEYKEKKEMLLPSKDALTLFGETAGWKHYADEDNALYLLEELPRLEEMLGERNTSMLYRLLQLNQMRLEMDENIENSMWRSRLSYTFRRNLFEKYAKDAEKTREAESLMKLVANMIENYPMETKMVLSEYIYKRRRV
>AP019005.1|BBG66779.1|2088602_2089445_-|CRISPR-repeat-RNA-endoribonuclease-Cas6
MDLKWFKIDVTAEEGYKPPFFAGSMLRGALGVALKRVVCINPSFCCDQCFAADSCLYYDFYEKKNTFHPYRITSALGMNRLKFSVWIYEDATSQLPYMLSAVKYALEVNGLGRKKEKVKVCSIETGGRRVYDGDKFSSLSEIVPEHFMLNELHSGAVLKMRTPLRIKKENRLSRELDLPMLVSSIHGRYRQMKRMEPSRPGYDIRGEISSSRLKHLDLYRYSNRQKSRMKLGGLIGSIGFQGLDKQSYAYLKLGEVLGVGKQTVFGLGDYFIERSEIGKD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP019005_2	2.10\|1606111\|29\|AP019005\|CRT,PILER-CR	1606111-1606139	29	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	384186-384214	6	0.793
AP019005_2	2.10\|1606111\|29\|AP019005\|CRT,PILER-CR	1606111-1606139	29	NZ_AP019744	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA4, complete sequence	280-308	6	0.793
AP019005_2	2.21\|1606111\|30\|AP019005\|CRISPRCasFinder	1606111-1606140	30	NZ_AP019744	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA4, complete sequence	280-309	7	0.767
AP019005_2	2.21\|1606111\|30\|AP019005\|CRISPRCasFinder	1606111-1606140	30	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	384185-384214	7	0.767
AP019005_5	5.21\|2080494\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080494-2080527	34	MT787017	UNVERIFIED: Staphylococcus phage WV, complete genome	137084-137117	7	0.794
AP019005_5	5.23\|2080634\|32\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080634-2080665	32	NZ_CP010110	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence	1288-1319	7	0.781
AP019005_5	5.26\|2080843\|32\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080843-2080874	32	NZ_CP013927	Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence	234314-234345	7	0.781
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MN693375	Marine virus AFVG_25M113, complete genome	24222-24255	7	0.794
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MN692965	Marine virus AFVG_117M92, complete genome	32251-32284	7	0.794
AP019005_3	3.3\|1932731\|32\|AP019005\|CRISPRCasFinder,CRT	1932731-1932762	32	MG592671	Vibrio phage 2.275.O._10N.286.54.E11, partial genome	41141-41172	8	0.75
AP019005_3	3.11\|1933219\|32\|AP019005\|CRISPRCasFinder,CRT	1933219-1933250	32	MT902335	Pasteurella phage vB_PmuP_Pa7, complete genome	16207-16238	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NZ_KM583822	Helicobacter pylori strain UM352 plasmid pUM352, complete sequence	6446-6477	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NZ_KM583823	Helicobacter pylori strain UM426 plasmid pUM426, complete sequence	6445-6476	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NZ_KM583809	Helicobacter pylori strain UM046 plasmid pUM046-2, complete sequence	6441-6472	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NC_017369	Helicobacter pylori F30 plasmid pHPF30, complete sequence	4489-4520	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NC_010932	Helicobacter pylori strain CCUG 17874 plasmid pHP666, complete sequence	1582-1613	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NC_017377	Helicobacter pylori Puno120 plasmid pHPPN120, complete sequence	3605-3636	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NC_013547	Helicobacter pylori plasmid pAL226, complete sequence	7594-7625	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NC_019561	Helicobacter pylori Aklavik117 plasmid p1HPAKL117, complete sequence	15071-15102	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NZ_CP012906	Helicobacter pylori strain 7C plasmid unnamed, complete sequence	1618-1649	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NZ_CP042212	Helicobacter pylori strain B128 7.13 plasmid pB128, complete sequence	2696-2727	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NC_014257	Helicobacter pylori B8 plasmid HPB8p, complete sequence	2579-2610	8	0.75
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	NZ_MK795207	Helicobacter pylori strain Yak16 plasmid pY16, complete sequence	996-1027	8	0.75
AP019005_5	5.15\|2080069\|33\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080069-2080101	33	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	3350-3382	8	0.758
AP019005_5	5.19\|2080351\|38\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080351-2080388	38	NC_009552	Geobacillus virus E2, complete genome	16775-16812	8	0.789
AP019005_5	5.21\|2080494\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080494-2080527	34	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	818222-818255	8	0.765
AP019005_5	5.23\|2080634\|32\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080634-2080665	32	NZ_CP021155	Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-3, complete sequence	61590-61621	8	0.75
AP019005_5	5.23\|2080634\|32\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080634-2080665	32	NZ_CP035461	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-3, complete sequence	24665-24696	8	0.75
AP019005_3	3.2\|1932670\|32\|AP019005\|CRISPRCasFinder,CRT	1932670-1932701	32	NC_015258	Polymorphum gilvum SL003B-26A1 plasmid pSL003B, complete sequence	38573-38604	9	0.719
AP019005_3	3.21\|1933219\|33\|AP019005\|PILER-CR	1933219-1933251	33	MT902335	Pasteurella phage vB_PmuP_Pa7, complete genome	16207-16239	9	0.727
AP019005_5	5.10\|2079724\|32\|AP019005\|CRISPRCasFinder,CRT	2079724-2079755	32	MH319755	Marine virus AG-345-L05 Ga0172272_12 genomic sequence	5199-5230	9	0.719
AP019005_5	5.21\|2080494\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080494-2080527	34	MN693772	Marine virus AFVG_250M408, complete genome	20428-20461	9	0.735
AP019005_5	5.21\|2080494\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080494-2080527	34	NZ_CP029456	Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence	63913-63946	9	0.735
AP019005_5	5.21\|2080494\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080494-2080527	34	KU892558	Lactococcus phage PLgT-1, complete genome	1416-1449	9	0.735
AP019005_5	5.23\|2080634\|32\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080634-2080665	32	NC_010627	Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence	140704-140735	9	0.719
AP019005_5	5.27\|2080910\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080910-2080943	34	KX397366	Erwinia phage vB_EamM_ChrisDB, complete genome	148161-148194	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	56218-56251	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	LR877331	Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1	14776-14809	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MN101226	Klebsiella phage KPN2 HKu-2019, complete genome	16703-16736	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	NC_031095	Klebsiella phage PKO111, complete genome	59699-59732	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MH729874	Klebsiella phage KP179, complete genome	106554-106587	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MH333064	Klebsiella phage Mineola, complete genome	44752-44785	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MN434095	Klebsiella pneumoniae phage JIPh_Kp122, complete genome	36648-36681	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MN101230	Klebsiella phage KPN6, complete genome	117636-117669	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MN101229	Klebsiella phage KPN5, complete genome	111181-111214	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	KY000080	Klebsiella phage KPV15, complete genome	56964-56997	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MG751100	Klebsiella phage KP1, complete genome	36194-36227	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	NC_028686	Klebsiella phage JD18, complete genome	35986-36019	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	MK421971	Klebsiella phage vB_KpnM_GF, partial genome	36076-36109	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	NC_031087	Klebsiella phage vB_KpnM_KpV477, complete genome	48197-48230	9	0.735
AP019005_5	5.29\|2081047\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2081047-2081080	34	CP062992	Klebsiella phage AShe-2020a, complete genome	160056-160089	9	0.735
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_KM085450	Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence	19540-19571	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_KM085449	Escherichia coli O104:H7 strain RM9387 plasmid pO104_H7, complete sequence	118919-118950	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP038793	Escherichia coli strain PF9285 plasmid pDW54_2, complete sequence	55198-55229	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_AP017613	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_3, complete sequence	6468-6499	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NC_022996	Escherichia coli plasmid pO26-CRL-125, complete sequence	95214-95245	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NC_022992	Escherichia coli plasmid pO111-CRL-115, complete sequence	85633-85664	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP009107	Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence	19540-19571	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP009105	Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence	118918-118949	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP019253	Escherichia coli strain 13KWH46 plasmid p13KWH46-3, complete sequence	17152-17183	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP027383	Escherichia coli strain 2013C-3250 plasmid unnamed3	58575-58606	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	125566-125597	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN334219	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm32 plasmid pSTM32_108, complete sequence	77543-77574	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN334220	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm37 plasmid pSTM37-118, complete sequence	87593-87624	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP027463	Escherichia coli isolate 07-4299 plasmid unnamed	92251-92282	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_AP018803	Escherichia coli strain E2863 plasmid pE2863-1, complete sequence	93719-93750	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP040264	Escherichia coli strain 631 plasmid pEc631_1, complete sequence	67199-67230	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP027600	Escherichia coli strain 97-3250 plasmid unnamed1, complete sequence	46351-46382	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_LT985320	Escherichia coli strain ECOR 3 genome assembly, plasmid: RCS85_pII	44396-44427	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NC_025138	Escherichia coli plasmid pH2332-107, complete sequence	61820-61851	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NC_025145	Escherichia coli plasmid pL2-87, complete sequence	36867-36898	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP013024	Escherichia coli strain 2009C-3133 plasmid unnamed1, complete sequence	6468-6499	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP027370	Escherichia coli strain 2014C-3307 plasmid unnamed2	146695-146726	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP028120	Escherichia coli O43 str. RM10042 plasmid pRM10042-1, complete sequence	20629-20660	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP043035	Escherichia coli strain XDL plasmid pXDL-2, complete sequence	64892-64923	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP023542	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence	19544-19575	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_AP019762	Escherichia coli O111:H- strain 110512 plasmid pO111-110512_1, complete sequence	88578-88609	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP033633	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb2, complete sequence	18434-18465	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP023144	Escherichia coli strain CFSAN061770 plasmid pEGY2, complete sequence	82950-82981	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP029742	Escherichia coli strain AR_0085 plasmid unnamed1, complete sequence	43929-43960	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN335638	Escherichia coli strain SFE199 plasmid pSFE199, complete sequence	86531-86562	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN335639	Escherichia coli strain SFE059 plasmid pSFE059, complete sequence	88015-88046	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_AP018797	Escherichia coli strain E2855 plasmid pE2855-1, complete sequence	94657-94688	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP032880	Escherichia coli strain SCEC020022 plasmid p1_020022, complete sequence	51960-51991	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	CP027673	Escherichia coli strain 2014C-3003 plasmid unnamed1	28603-28634	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN335919	Escherichia coli strain SD-2 plasmid pNDM-T2, complete sequence	75769-75800	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN335921	Escherichia coli strain SD-6 plasmid pNDM-T6, complete sequence	84688-84719	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	MN276083	Escherichia coli strain GZ7DS11 plasmid pHN7DS11,complete sequence	85090-85121	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG825375	Escherichia coli strain 1106 plasmid p1106-NDM, complete sequence	83156-83187	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG838206	Escherichia coli strain 92944 plasmid p92944-NDM, complete sequence	85406-85437	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG271839	Escherichia coli strain SDX5C138 plasmid pHNSD138-1, complete sequence	72977-73008	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG825371	Escherichia coli strain 1106 plasmid p1106-IncFII, complete sequence	61027-61058	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG196294	Escherichia coli strain THSJ02 plasmid pHNTH02-1, complete sequence	87816-87847	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG545909	Escherichia coli strain EC013 plasmid pEC013, complete sequence	88244-88275	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_KY689635	Escherichia coli strain Mbl536 plasmid pMbl536, complete sequence	86224-86255	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_KY565558	Escherichia coli strain Mbl488 plasmid pMbl488, complete sequence	87059-87090	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_MG601057	Escherichia coli strain EC1107 plasmid pEC1107-NDM-116K, complete sequence	85511-85542	10	0.688
AP019005_3	3.4\|1932792\|32\|AP019005\|CRISPRCasFinder,CRT	1932792-1932823	32	NZ_CP028611	Escherichia coli strain 142 plasmid pTA142-2, complete sequence	58198-58229	10	0.688
AP019005_5	5.21\|2080494\|34\|AP019005\|CRISPRCasFinder,CRT,PILER-CR	2080494-2080527	34	NC_020292	Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence	104280-104313	10	0.706
AP019005_3	3.1\|1932581\|60\|AP019005\|CRISPRCasFinder,CRT	1932581-1932640	60	NZ_CP028488	Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence	108750-108809	14	0.767

1. spacer 2.10|1606111|29|AP019005|CRT,PILER-CR matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 6, identity: 0.793

tgccgccactgagaaaacaccgtgaaata	CRISPR spacer
ttgaaccactaagaaaacaccctgaaata	Protospacer
*   .*****.********** *******

2. spacer 2.10|1606111|29|AP019005|CRT,PILER-CR matches to NZ_AP019744 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA4, complete sequence) position: , mismatch: 6, identity: 0.793

tgccgccactgagaaaacaccgtgaaata	CRISPR spacer
ttgaaccactaagaaaacaccctgaaata	Protospacer
*   .*****.********** *******

3. spacer 2.21|1606111|30|AP019005|CRISPRCasFinder matches to NZ_AP019744 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA4, complete sequence) position: , mismatch: 7, identity: 0.767

tgccgccactgagaaaacaccgtgaaatat	CRISPR spacer
ttgaaccactaagaaaacaccctgaaatag	Protospacer
*   .*****.********** *******

4. spacer 2.21|1606111|30|AP019005|CRISPRCasFinder matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 7, identity: 0.767

tgccgccactgagaaaacaccgtgaaatat	CRISPR spacer
ttgaaccactaagaaaacaccctgaaatag	Protospacer
*   .*****.********** *******

5. spacer 5.21|2080494|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MT787017 (UNVERIFIED: Staphylococcus phage WV, complete genome) position: , mismatch: 7, identity: 0.794

aaaagaagaaaaaaaaatcaaataaggagattga	CRISPR spacer
aaaagaataaaaaaaaattaaatataaggcttga	Protospacer
******* **********.***** ...* ****

6. spacer 5.23|2080634|32|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010110 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence) position: , mismatch: 7, identity: 0.781

attaacgccgagtcaaatcgaacaattgctta	CRISPR spacer
aaaaaagatgagttaaatcgaacaatttctta	Protospacer
*  ** * .****.************* ****

7. spacer 5.26|2080843|32|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013927 (Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence) position: , mismatch: 7, identity: 0.781

tgtttacacaaagcttaccaaggcggataaaa	CRISPR spacer
atgttacacaaagcttaccaagggggttacag	Protospacer
   ******************** ** ** *.

8. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN693375 (Marine virus AFVG_25M113, complete genome) position: , mismatch: 7, identity: 0.794

caaagaggagattgaaatgaaaacaga-actaaaa	CRISPR spacer
aaaataggagattgaaatgaacacagatactttt-	Protospacer
 *** **************** ***** ***

9. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN692965 (Marine virus AFVG_117M92, complete genome) position: , mismatch: 7, identity: 0.794

caaagaggagattgaaatgaaaacagaactaaaa	CRISPR spacer
caataaaaatattaaaatgaaaacagaattaaaa	Protospacer
*** .*..* ***.**************.*****

10. spacer 3.3|1932731|32|AP019005|CRISPRCasFinder,CRT matches to MG592671 (Vibrio phage 2.275.O._10N.286.54.E11, partial genome) position: , mismatch: 8, identity: 0.75

atctcgtcagttccgttaccagggaaaatatt	CRISPR spacer
acatagtcagttcgtttaccagggaaaagtgt	Protospacer
*. * ********  *************   *

11. spacer 3.11|1933219|32|AP019005|CRISPRCasFinder,CRT matches to MT902335 (Pasteurella phage vB_PmuP_Pa7, complete genome) position: , mismatch: 8, identity: 0.75

tgaaaaagtattggtaaggctgttgaactggt	CRISPR spacer
gttaaaagtattggaaaggctgttaaaagcgt	Protospacer
   *********** *********.**   **

12. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KM583822 (Helicobacter pylori strain UM352 plasmid pUM352, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

13. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KM583823 (Helicobacter pylori strain UM426 plasmid pUM426, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

14. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KM583809 (Helicobacter pylori strain UM046 plasmid pUM046-2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

15. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NC_017369 (Helicobacter pylori F30 plasmid pHPF30, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

16. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NC_010932 (Helicobacter pylori strain CCUG 17874 plasmid pHP666, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

17. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NC_017377 (Helicobacter pylori Puno120 plasmid pHPPN120, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

18. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NC_013547 (Helicobacter pylori plasmid pAL226, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

19. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NC_019561 (Helicobacter pylori Aklavik117 plasmid p1HPAKL117, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
actatctttgagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

20. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP012906 (Helicobacter pylori strain 7C plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

21. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP042212 (Helicobacter pylori strain B128 7.13 plasmid pB128, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

22. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NC_014257 (Helicobacter pylori B8 plasmid HPB8p, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

23. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MK795207 (Helicobacter pylori strain Yak16 plasmid pY16, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
gctatctttaagaactacaaagagctagataa	Protospacer
 *  ***** ************** ***  *.

24. spacer 5.15|2080069|33|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.758

cttgcgtttctttgacttgatcgcttacttgct	CRISPR spacer
caaggagttgttttacttgatcgcttacttgat	Protospacer
*  * . ** *** ***************** *

25. spacer 5.19|2080351|38|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 8, identity: 0.789

-tagccgcttccatttttataggtgtaaaaaccatatat	CRISPR spacer
gtaactac-tacatctttatatgtgtaaaaaccatataa	Protospacer
 **.*..* * ***.****** ****************

26. spacer 5.21|2080494|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.765

aaaagaagaaaaaaaaatcaaataag----gagattga	CRISPR spacer
aaaaaaaaaaaaaaaaatcaaataagtcctaaaa----	Protospacer
****.**.******************    .*.*

27. spacer 5.23|2080634|32|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021155 (Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-3, complete sequence) position: , mismatch: 8, identity: 0.75

attaacgccgagtcaaatcgaacaattgctta	CRISPR spacer
gttaacgcctagtcaaatcgaacagatcttgg	Protospacer
.******** **************. * .* .

28. spacer 5.23|2080634|32|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035461 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-3, complete sequence) position: , mismatch: 8, identity: 0.75

attaacgccgagtcaaatcgaacaattgctta	CRISPR spacer
gttaacgcctagtcaaatcgaacagatcttgg	Protospacer
.******** **************. * .* .

29. spacer 3.2|1932670|32|AP019005|CRISPRCasFinder,CRT matches to NC_015258 (Polymorphum gilvum SL003B-26A1 plasmid pSL003B, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgacgccaatccggctctggtcacacgggt	CRISPR spacer
ggcggcgccaatgcggctctggtggcggtcgc	Protospacer
****.******* ********** .*.   *.

30. spacer 3.21|1933219|33|AP019005|PILER-CR matches to MT902335 (Pasteurella phage vB_PmuP_Pa7, complete genome) position: , mismatch: 9, identity: 0.727

tgaaaaagtattggtaaggctgttgaactggtc	CRISPR spacer
gttaaaagtattggaaaggctgttaaaagcgta	Protospacer
   *********** *********.**   **

31. spacer 5.10|2079724|32|AP019005|CRISPRCasFinder,CRT matches to MH319755 (Marine virus AG-345-L05 Ga0172272_12 genomic sequence) position: , mismatch: 9, identity: 0.719

ccgttcttttagaactacaaagagatagtaag	CRISPR spacer
aaagacaattagaactagaaagagatcgtaag	Protospacer
  .  *  ********* ******** *****

32. spacer 5.21|2080494|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN693772 (Marine virus AFVG_250M408, complete genome) position: , mismatch: 9, identity: 0.735

aaaagaagaaaaaaaaatcaaataaggagattga	CRISPR spacer
agttttagaaaaagaaatcaaataaggagaaaaa	Protospacer
*.    *******.****************  .*

33. spacer 5.21|2080494|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029456 (Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence) position: , mismatch: 9, identity: 0.735

aaaagaagaaaaaaaaatcaaataaggagattga	CRISPR spacer
aaggacttacaaaaaaatcaaataaggcaattga	Protospacer
**...   * ***************** .*****

34. spacer 5.21|2080494|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to KU892558 (Lactococcus phage PLgT-1, complete genome) position: , mismatch: 9, identity: 0.735

aaaagaagaaaaaaaaatcaaataaggagattga	CRISPR spacer
caaagaagaagaaaaaatcatataaaataaataa	Protospacer
 *********.********* ****.. .* *.*

35. spacer 5.23|2080634|32|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NC_010627 (Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence) position: , mismatch: 9, identity: 0.719

attaacgccgagtcaaatcgaacaattgctta	CRISPR spacer
gctaacgccgattcaaatccaacaaaaactgc	Protospacer
..********* ******* *****  .**

36. spacer 5.27|2080910|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to KX397366 (Erwinia phage vB_EamM_ChrisDB, complete genome) position: , mismatch: 9, identity: 0.735

gtgatagccgcttaagcaacggctacggaaaacg	CRISPR spacer
gcgtccggtgctttagcaacggctgcggaaaact	Protospacer
*.* . * .**** **********.********

37. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaacagaactaaaa	CRISPR spacer
aaaagaggaaattgaaatgaatacaatggctaaa	Protospacer
 ********.*********** ***. . . ***

38. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to LR877331 (Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca--gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctaattgg--	Protospacer
.** ******************.**   **.*..

39. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN101226 (Klebsiella phage KPN2 HKu-2019, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

40. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NC_031095 (Klebsiella phage PKO111, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

41. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MH729874 (Klebsiella phage KP179, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

42. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MH333064 (Klebsiella phage Mineola, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca--gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctaattgg--	Protospacer
.** ******************.**   **.*..

43. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN434095 (Klebsiella pneumoniae phage JIPh_Kp122, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

44. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN101230 (Klebsiella phage KPN6, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

45. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MN101229 (Klebsiella phage KPN5, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

46. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to KY000080 (Klebsiella phage KPV15, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

47. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MG751100 (Klebsiella phage KP1, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

48. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NC_028686 (Klebsiella phage JD18, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

49. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to MK421971 (Klebsiella phage vB_KpnM_GF, partial genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

50. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NC_031087 (Klebsiella phage vB_KpnM_KpV477, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

51. spacer 5.29|2081047|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to CP062992 (Klebsiella phage AShe-2020a, complete genome) position: , mismatch: 9, identity: 0.735

caaagaggagattgaaatgaaaaca-gaactaaaa	CRISPR spacer
taatgaggagattgaaatgaaagcacctacttgg-	Protospacer
.** ******************.**   *** ..

52. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KM085450 (Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

53. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KM085449 (Escherichia coli O104:H7 strain RM9387 plasmid pO104_H7, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

54. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP038793 (Escherichia coli strain PF9285 plasmid pDW54_2, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

55. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_AP017613 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_3, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

56. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NC_022996 (Escherichia coli plasmid pO26-CRL-125, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

57. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NC_022992 (Escherichia coli plasmid pO111-CRL-115, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

58. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP009107 (Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

59. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP009105 (Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

60. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP019253 (Escherichia coli strain 13KWH46 plasmid p13KWH46-3, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

61. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP027383 (Escherichia coli strain 2013C-3250 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

62. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

63. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN334219 (Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm32 plasmid pSTM32_108, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

64. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN334220 (Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm37 plasmid pSTM37-118, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

65. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP027463 (Escherichia coli isolate 07-4299 plasmid unnamed) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

66. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_AP018803 (Escherichia coli strain E2863 plasmid pE2863-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

67. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP040264 (Escherichia coli strain 631 plasmid pEc631_1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

68. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP027600 (Escherichia coli strain 97-3250 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

69. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_LT985320 (Escherichia coli strain ECOR 3 genome assembly, plasmid: RCS85_pII) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

70. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NC_025138 (Escherichia coli plasmid pH2332-107, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

71. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NC_025145 (Escherichia coli plasmid pL2-87, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

72. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP013024 (Escherichia coli strain 2009C-3133 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

73. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP027370 (Escherichia coli strain 2014C-3307 plasmid unnamed2) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

74. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP028120 (Escherichia coli O43 str. RM10042 plasmid pRM10042-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

75. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP043035 (Escherichia coli strain XDL plasmid pXDL-2, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

76. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP023542 (Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

77. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_AP019762 (Escherichia coli O111:H- strain 110512 plasmid pO111-110512_1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

78. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP033633 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb2, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

79. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP023144 (Escherichia coli strain CFSAN061770 plasmid pEGY2, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

80. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP029742 (Escherichia coli strain AR_0085 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

81. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN335638 (Escherichia coli strain SFE199 plasmid pSFE199, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

82. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN335639 (Escherichia coli strain SFE059 plasmid pSFE059, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

83. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_AP018797 (Escherichia coli strain E2855 plasmid pE2855-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

84. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP032880 (Escherichia coli strain SCEC020022 plasmid p1_020022, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

85. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to CP027673 (Escherichia coli strain 2014C-3003 plasmid unnamed1) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

86. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN335919 (Escherichia coli strain SD-2 plasmid pNDM-T2, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

87. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN335921 (Escherichia coli strain SD-6 plasmid pNDM-T6, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

88. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to MN276083 (Escherichia coli strain GZ7DS11 plasmid pHN7DS11,complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

89. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG825375 (Escherichia coli strain 1106 plasmid p1106-NDM, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

90. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG838206 (Escherichia coli strain 92944 plasmid p92944-NDM, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

91. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG271839 (Escherichia coli strain SDX5C138 plasmid pHNSD138-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

92. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG825371 (Escherichia coli strain 1106 plasmid p1106-IncFII, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

93. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG196294 (Escherichia coli strain THSJ02 plasmid pHNTH02-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

94. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG545909 (Escherichia coli strain EC013 plasmid pEC013, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

95. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KY689635 (Escherichia coli strain Mbl536 plasmid pMbl536, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

96. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_KY565558 (Escherichia coli strain Mbl488 plasmid pMbl488, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

97. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_MG601057 (Escherichia coli strain EC1107 plasmid pEC1107-NDM-116K, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

98. spacer 3.4|1932792|32|AP019005|CRISPRCasFinder,CRT matches to NZ_CP028611 (Escherichia coli strain 142 plasmid pTA142-2, complete sequence) position: , mismatch: 10, identity: 0.688

tggatggtgactcccatactcacctccttttc	CRISPR spacer
ctgccggtgactcccttactcaccttctccgt	Protospacer
. * .********** *********.**.. .

99. spacer 5.21|2080494|34|AP019005|CRISPRCasFinder,CRT,PILER-CR matches to NC_020292 (Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence) position: , mismatch: 10, identity: 0.706

aaaagaagaaaaaaaaatcaaataaggagattga	CRISPR spacer
gaaagcagaaaaataaatcaaataaaaataaccg	Protospacer
.**** ******* ***********..* * . .

100. spacer 3.1|1932581|60|AP019005|CRISPRCasFinder,CRT matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 14, identity: 0.767

ttaatggtcgatagtcaatagtcaatagtcaatagtcaatagtcaatagtcgatggtcga	CRISPR spacer
cttagattcaatagtcaatagtcaatagtcaatagtcaatagtcaatagaataaattctc	Protospacer
.* * . **.***************************************   * . **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8651 : 17080

Helicobacter_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG64709.1\|8651_10307_-	DNA primase	A0A1S5RG58	Helicobacter_phage	6.1e-53	32.5
BBG64710.1\|10477_11518_+	putative periplasmic protein	NA	NA	NA	NA
BBG64711.1\|11492_11927_+	ribonuclease HI	A0A142CJN1	Brazilian_marseillevirus	5.9e-24	45.2
BBG64712.1\|12004_12685_+	ribonuclease III	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	8.4e-25	31.3
BBG64713.1\|12681_13770_+	chorismate synthase	A0A291AU41	Pandoravirus	7.0e-74	43.1
BBG64714.1\|13772_14651_+	zinc ABC transporter, periplasmic-binding protein ZnuA	NA	NA	NA	NA
BBG64715.1\|14647_15430_+	zinc ABC transporter, ATP-binding protein ZnuC	G9BWD6	Planktothrix_phage	1.2e-19	32.5
BBG64716.1\|15422_16250_+	zinc ABC transporter, inner membrane permease protein ZnuB	NA	NA	NA	NA
BBG64717.1\|16246_17080_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	6.2e-62	48.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP019005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection