CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP019314	Microcystis viridis NIES-102 DNA, complete genome	23 crisprs	cas14j,Cas14c_CAS-V-F,c2c9_V-U4,cas14k,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas8b5,cas7,cas5,cas6,cas4,cas1,cas2,2OG_CAS,RT,DinG,csa3	8	25	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP019314_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_3

483724-483795

Orphan

Consensus_repeat	Method
CCCCCCTTAATAAGGGGGGTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_3

>merge|AP019314|3|483724-483795|CRISPRCasFinder
CCCCCCTTAATAAGGGGGGTGCCGATAGGCGGGGGGATCCCCCCTTAATCCCCCCTTAATAAGGGGGGTGTC

>AP019314|3|3|483724-483795|CRISPRCasFinder
CCCCCCTTAATAAGGGGGGTGCC	GATAGGCGGGGGGATCCCCCCTTAAT
CCCCCCTTAATAAGGGGGGTGTC

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH37965.1\|479609_479810_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH37968.1\|481777_482836_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH37975.1\|489788_491231_+\|cysteinyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234705
AP019314.1\|BBH37963.1\|477418_479065_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372118
AP019314.1\|BBH37967.1\|481128_481599_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
AP019314.1\|BBH37964.1\|479123_479564_-\|ferric-uptake-regulator	unknown	unknown	gnl\|CDD\|223806
AP019314.1\|BBH37979.1\|495665_495950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370151
AP019314.1\|BBH37973.1\|487014_488172_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
AP019314.1\|BBH37966.1\|479967_480513_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH37970.1\|483854_485582_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
AP019314.1\|BBH37972.1\|486251_486893_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368559
AP019314.1\|BBH37962.1\|475506_477228_+\|lysyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234778
AP019314.1\|BBH37978.1\|493878_495312_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|180119
AP019314.1\|BBH37971.1\|485585_486227_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368559
AP019314.1\|BBH37969.1\|482845_483646_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
AP019314.1\|BBH37960.1\|473286_474201_-\|alpha/beta-fold-family-hydrolase	unknown	unknown	gnl\|CDD\|178283
AP019314.1\|BBH37974.1\|488457_488733_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH37977.1\|492861_493866_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227894
AP019314.1\|BBH37961.1\|474802_475372_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275169
AP019314.1\|BBH37976.1\|491213_492743_-\|glycine/betaine-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|270331

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH37975.1\|489788_491231_+\|cysteinyl-tRNA-synthetase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
AP019314.1\|BBH37963.1\|477418_479065_-\|hypothetical-protein	gnl\|CDD\|372118	pfam12452, DUF3685, Protein of unknown function (DUF3685). This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. There are two completely conserved residues (L and D) that may be functionally important.	2.69994e-97
AP019314.1\|BBH37967.1\|481128_481599_-\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	5.25117e-57
AP019314.1\|BBH37964.1\|479123_479564_-\|ferric-uptake-regulator	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	3.47878e-36
AP019314.1\|BBH37973.1\|487014_488172_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.19091e-35
AP019314.1\|BBH37972.1\|486251_486893_-\|hypothetical-protein	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.95738e-18
AP019314.1\|BBH37970.1\|483854_485582_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
AP019314.1\|BBH37962.1\|475506_477228_+\|lysyl-tRNA-synthetase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
AP019314.1\|BBH37978.1\|493878_495312_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|180119	PRK05500, PRK05500, bifunctional orotidine-5'-phosphate decarboxylase/orotate phosphoribosyltransferase.	0
AP019314.1\|BBH37971.1\|485585_486227_-\|hypothetical-protein	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.19645e-22
AP019314.1\|BBH37969.1\|482845_483646_+\|two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.43464e-90
AP019314.1\|BBH37960.1\|473286_474201_-\|alpha/beta-fold-family-hydrolase	gnl\|CDD\|178283	PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.	4.74882e-62
AP019314.1\|BBH37979.1\|495665_495950_-\|hypothetical-protein	gnl\|CDD\|370151	pfam08846, DUF1816, Domain of unknown function (DUF1816). Crocosphaera watsonii CpcD is associated with the pfam01383 domain suggesting this presumed domain could have a role in phycobilisomes.	1.40768e-39
AP019314.1\|BBH37977.1\|492861_493866_+\|hypothetical-protein	gnl\|CDD\|227894	COG5607, COG5607, Uncharacterized conserved protein [Function unknown].	7.34126e-59
AP019314.1\|BBH37961.1\|474802_475372_+\|hypothetical-protein	gnl\|CDD\|275169	TIGR04376, conserved_hypothetical_protein, TIGR04376 family protein. Members of this protein family resemble TIGR04375 and, more distantly, to phage shock protein A (PspA). Members are restricted to the Cyanobacteria.	2.21572e-74
AP019314.1\|BBH37976.1\|491213_492743_-\|glycine/betaine-transport-system-permease-protein	gnl\|CDD\|270331	cd13613, PBP2_Opu_like_2, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold. This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.36091e-163

>AP019314.1|BBH37969.1|482845_483646_+|two-component-response-regulator
MGTWGYGDMEEMGIWGKWGDSIKKPQNPNTPTPDTIFFTFMKILIVDDEKELTEPLEQILAQEGYEVDIADNGQTGLELAQENNYDLLILDWMLPQQSGLQICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSPNFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTHPGQLLTHEQIYQHLWSEGEQPNSNVVPALMRLLRRKIEAAGETPLINTVYGKGYRFGEN
>AP019314.1|BBH37968.1|481777_482836_+|hypothetical-protein
MRLEREDFDWAVQQNLITASQAENLWTAFLSRYPQEDEVNRPRFNFANVAYYFGALIVISALGWFMNKAWESFGGAGLFFIALFYAICFIFTGKNLYFQQNLKIPGGLLFTMAVAMTPLAIYGLQRWTGYWQAGNMAIYPDFYTWTKGGWFLMELGTIIAGLITLRFVKFPFLTAPIAFSLWYMSMDLTPLLFGENEYIWRMRLWVSFWFGIACLITAYLIDVRQRRSRGDFAFWLYLFGLIMFWFSLSLLIDDNEAQRFLYCLINLGLMLLSVLLKRRLFVVFGGIGVFAYLSYLSYRIFADSIFFPFALTVLGLGIIYMGILYQRHYPTLARFIESYIPLEWRNLLPKDR
>AP019314.1|BBH37967.1|481128_481599_-|hypothetical-protein
MITKSELYEQDFQLWLITTIGQLEQGDFQALDVSHLVEELKELGKSDKNALEGNLMILLAHLLKLKVQSSAPESMKSSWYSSIVEHRERVIALLENTPSLKSHLAIAIDKTYPKGRKIAIKESKLADFGIAIPPEEAYPLDCPFSLEQILDEDFYG
>AP019314.1|BBH37966.1|479967_480513_+|hypothetical-protein
MTVTTVSLTLAAASSSSAATVFGFQDAYDPINWTFTNSNADGFVNTGGAPASISLTGGNNGSGGSGTTDYTTTAAAAGTVTFDWNYSTADGPFWDPFGYLLNGSFTQVTNNGGGVFQNGTSTFNVLAGDSFGFRIFTRDNLFGRARVTISNFSAPIPEPSTVLSLLVLGGLGAGLKYLKRN
>AP019314.1|BBH37965.1|479609_479810_-|hypothetical-protein
MLGSLILCVISVTYIVAIDLCVLCVSVVLSTHSPANLLESGAADFLSQFEEGLKTGAMWTSIERLS
>AP019314.1|BBH37964.1|479123_479564_-|ferric-uptake-regulator
MDNLEVKQKPIRCLEDAIERCQTLGMRVSRQRRYILELLWQAQEHLSAREIYDRLNLQGKNIGHTSVYQNLEALSGQGIIESVERWDGRLYGNISDSHSHVNCLDSQQIIDVHIELPPELIKQVEASTGVKITDYRIDFYGYKQNK
>AP019314.1|BBH37963.1|477418_479065_-|hypothetical-protein
MIDRPLTLIIIDNDPIFRLGLVQALSQIENISIVTEGDLETIFALTLNPAPEIILIDPLFDWSYCEILHSRYPESKIVLLTFPLDSRQQLIARELGIAGYIPKGTNLEQFITILGQISRDETHDVAPSALTIATRPSLAPSHWLITAGKTGLNRIESELHLIDLHLNQQSLSGFDRFYWQGRKRELLAALWLVRKLIPLEGSYYNSPSATPPIIINNIDRELPILSRERPLCVSAVFESTLAVIRSPLINRTKISFEIDVLLDNRQRELLYLVLDEIRKNVDEMRYLQISIGELTSRLNLIIYDIWEKVTRKFLEINASVYDEISKGRLNEIILEEREAIQTEILNKIPFTLDLFSYLVYENSLTIDGVGYRANAPETIARAEILLQNLIHNIANAVTVIILNNFSESERVKQKLYRSEFLIARKLAKIRNELSWKYRRQQYWQDPKDIFESQYQLFHYSEGEIQSLAIYSPRQEELNSLTGIPWLVSIALELRDSLSPRLRAFFRVVGKGVVYILIQVIGRGIGLVVRGVLQGVGNTWQEVKGKKGS
>AP019314.1|BBH37962.1|475506_477228_+|lysyl-tRNA-synthetase
MASQAQNPENQPSSTLEEIRAARLEKVAGLQKAGLNPYAYQWKSTAHAQQLQEQYADLAPGEEISAEVAIAGRIIARRILGKLAFFNLQDETGTIQLYLDKKRISETMAAVPNAFNTVIKLTDTGDILGAKGTIKRTERGELSIYVNEYEILTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRQTFRRRAQITAAIRRYLDQEGFIEIETPVLQSEAGGADARPFITYHNTLEMELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGVSTKHNPEFTSIEIYQAYADYYDMMELTENIIVNAAQDVLGTLKITYQDREIDLTPPWRRVTMHELVQEITGVDLNSFEDFESARIAAENAGIGVPEDCKTIGKLLNEAFEQKVEETLIQPTFVLDFPVEISPLAKPHRSKTDLVERFELYVVGRELANSFSELTDPIDQRQRLEAQALKKAAGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLIMLLTDSASIRDVIAFPLLKSQSTAIKSFDYDEEKKILKVEFNHGGIYLYHDLPLAVYKDFQSAPSKGQFFVGQIRDKYSFDKEL
>AP019314.1|BBH37961.1|474802_475372_+|hypothetical-protein
MGNLFDDVSRFLETQLEEFLRSHPQLELQALVEQLREQERDTAKLISALENERQRLEQQILATAQDIQTWHARIDKAKAAGRQDLLKAASEREAALFRQGNQLWGRMEGVKKRLSQSQELLQQVQQRRQEVQIKAEKAPKNQSRDWETTFWDQPQESDYQRSNYDNLDLKFKEWEMEEELKKLKREMGR
>AP019314.1|BBH37960.1|473286_474201_-|alpha/beta-fold-family-hydrolase
MTTSPAWTERIGYQRDWVWRGWQIRYSFMPAKNPQDADKPPLILLHGFGAAIEHWRHNIPILSQNHRVYAVDLLGFGGSRKVQVPYTVNLWVEQIHDFWQTFINRPVVLVGNSIGSLVSMALAGKYPEMVAGLVMLSLPDVSRRREMIADWLLNIVTPIENFFTSPWLLKPIFYYLRRPQVLKKWTGIAYEDKKAVSDELVQIIAAPTLDEGAAEAFISLAQAVNHPEYCPPAKLILPRLEIPILLCWGKQDRMVPVQLAQGFVSLNPRIKYVEFDRAGHCLQDECPDRFNPILLEWLESVAVL
>AP019314.1|BBH37970.1|483854_485582_+|DNA-repair-protein-RecN
MLSCLQIENFTLIDRLELTFGNGLNVLTGETGAGKSIILDAIDIVLGGKVNHRVIRQGSQQSTLEATFSLTPELIAWLESQEIDLLEDNSLTISRELVITNNSLRSRSRINGVVANRQQMAQIRDFLVEITAQGQTVQLMDANRQRELLDLYGGESLLRQREKVATAYLNWQESKNILNNRLQSEQNRLQRLDLLEYQLKELESANLTDADELEQLEQERNRLSHAVDLQNSSYQVYQLLYQNDRDQPAVADLLGKAENILTNMMVYDTSLEPILEMVRSALNQVVEAGQEINVYGDSLEADPERLNEIEERIVQLKRICRKYGPSLAEALDYYQKLQQELAELTGEGQSIEELEKICQQQENIYRETSTQLTFLRQETASQLEKQLVQELKPLAMEKVIFVCRIAPGNPSSLGVDQVVFYFSPNPGEKIQPLSSTASGGEMSRFLLALKSCFSQSQSAAATLIFDEIDAGVSGKVAQAIADKLDQLGQQYQVLCVTHQPLVAALADHHFRVYKQMIAEDNPTNLSEIRTVVRVTSLDNRQTRREELAQLTGGNSAADAIAFAESLLEKAAAKKQ
>AP019314.1|BBH37971.1|485585_486227_-|hypothetical-protein
MQQLETTISTDLWIKASWEEYLEAIKNLPENKGKSYYYNGYYRLEMTPIGNDHASDHAILIFAVSLYATLKNLAFNAKDNCSFRRSGYREVQPDISYYFAEKANLIPYGTSMIDLNQYPPPDLVIEISKSTLNDDLGNKRLLYEELGVSEYWSVKVDDPQIFAFEIIDRGSKRIDISKVLPNLKLAVLESALQQARTRDQSQVGRWLISQFQG
>AP019314.1|BBH37972.1|486251_486893_-|hypothetical-protein
MQQLETRGITDSWIKGSWEEYLEAIKNFPENQGKSYYYNGYYRLEMTPIGFEHARDHHVVFLGVSLYAILKEIPFQGLPTCSYRKRGIREVQPDISYYLGEKANLIPNGTSIIDLNQYPPPDLVIEISKSTLNDDLGNKRLLYEELGVSEYWSVKVDDPQIFAFEIIDRGSKRIDISKVLPNLRLAVLESALQQARSKDQSQVGRWLISQFQG
>AP019314.1|BBH37973.1|487014_488172_+|FAD-dependent-oxidoreductase
MTTTYDYIIIGGGITGSALSYELANLGSRVLLLEKETHPLNATFYSYGGLAYWSATTEIQRKLYQEGREIQRNLSQELGIDNEYRDIELILTVNPEDDPVAVAEKFAIFAITPEILDPQAAIALEPLLNPAAISGVLRLPHGHINAEKTNLAYQQAFLRLGGKIIREAVIELIETASRITGVKTPKNNYSAGETIVCAGGLTRSLLQKSGIAAPVYFTHAQVIKIPPTEIKLNTLVMPAIAARLLLEQKITQLEKQGIWQRETPEIIASVLETGAVQFRDQSLYLGQISAIITDPDAILNPLAGEKAIRTAVGTLLPSLASLPGSCHHCLVAFAPSGRPLVGAIADKLGLQVFSGFTSTLVSAPPLARRFARHLLGENDEIIRVC
>AP019314.1|BBH37974.1|488457_488733_-|hypothetical-protein
MNEPPNSAGDEIQLPRGERVDQLRNLIETLRIADEVANRGYLITSAEVADLMDINPGAVTSRGDHWPWRNWVISRVRREGNQILWQLEKVD
>AP019314.1|BBH37975.1|489788_491231_+|cysteinyl-tRNA-synthetase
MTLILYNTLSRREEPFTPLIPGMVSMYCCGITVYDYCHLGHARTCVVWDVVRRYLEYLGYKVRYIQNFTDIDDKILNRAKNEHTTMAAVAERFIEAYFEDMAKLGVRPADAYPRATHTLDGIKRLVYELEQKGYAYPSDGDVYYSVRRFSDYGKLSGRKLDDLQAGASGRVETDDPEAIKKQDPFDFALWKGAKSGEPSWDSPWGQGRPGWHIECSAMVKEQLGETIDIHVGGSDLIFPHHENEIAQSEAATGKPLAHYWLHNGMVKVAGEKMSKSLGNFITIRELLAKYDPLAVRLLILGAQYRKPIDFSDEGLQAATNGWHTLQEGLSFGYKHLPPDNPAITDQELENRFQEAVNHDFNFAGGLAVLFEIAKELRKEGNNLTHAGKTDSNLAQLAVKWHTLVKLSRVLGLEMAADQGETPVSEGISAADIENLIQQRTEAKKAKNYAESDRIRAELKAQGITLIDQPGGVTKWLREGD
>AP019314.1|BBH37976.1|491213_492743_-|glycine/betaine-transport-system-permease-protein
MDSFWLDYGGEIAFRTGEHLFLTGIAMAMGSLIGIPLGILISRQAILAPPIIAIVNTLQTIPSLALFGFLISVPFLGGIGKIPAIVALTLYTLLPIVLNTYLGIKKVDPELKLAGLSLGMTDGQILRYIELPLARATILAGVRIATVIAIGVATIAAAIGGGGLGVFIFRGIATVNNQLILAGAIPAAFLALVADWSLGRLEKTFSPSQRPKKPSKWQWGLGLIGLALLSFLLTQIFHSSPGTVVIGSKNFTEQVILGEILAQEIEKETNLRVERQFNLGGTLICHEAVKAGKIDGYVEYSGTAFTGILQEKPLNDARLVFEKLQEIYPEKFNLEVFPSLGFENTFAIVIRGETASQYNLKTLSQVAKYTPNWQAGFGYEFLEREDGYKGLAKTYGLNFAGPPKVMDLGLMYRALAEKQVDLVAGNSTDGLIPVLDLVILEDDQRYFPPYEAVPIFNRDSLRKYPQLRQVLAKLTGKITSTAMQKLNYQVDGRDRKVEEVVKEFLVSLS
>AP019314.1|BBH37977.1|492861_493866_+|hypothetical-protein
MTNKFNPRAKTVADWAYIGIDKHFHKVLKHEAGVLLDQDTEELHQIRVGMRRLRSTLTGFAPALTMPKSADQKRVGNLGRILGELRDLDVLKSAFVGHYQPILPPKEQDLLKKVLQVLEHRREKAFAKVEKLLKSDKFLNFKADFASWLDNPTYQPIGKLDIATVLPDLLLPQASRFLLHEGWLVGVNLEDYKRLREFSSQEIDDLLEKEGLLLHDLRKEAKRSRYNMELFPQFYGDKYREYLEDIKNLQSILGEMQDCCVLSAFLSQIFPNCLAKEMPTLLEIFRNIRHQKWQEWQPLQKKFLDADTRKSLHQTILQPIFRPNSVELETNPEF
>AP019314.1|BBH37978.1|493878_495312_+|orotate-phosphoribosyltransferase
MNFFQKLNHAISQNQTLLVLGLDANPEMMPSTPGELIVNLEQWLKFIIDETAPFVCAYKPTLGFYQALGSAGLELLQRILTAIPPHIPVILDAKHGDINTSSVLAETIFKTWQVDAVTLNPYSGQDHVAPFLVYPEHGAFILCHTSNQGAINLQEFPSCDNPFYLQVVKEACTWGTPEQVFLEVGTTQPEILKKIRNFAPERLILLRSIWEDKSKFSELITVGLNSHGEGLLIPVPQDFLSQPDLGTKVKDLREEVNKIQQNHQQESSQDETWTANVCLLKQHPHQDLILQLFDIGCLLFGDYVQASGETFSYYIDLRKIISNPNIFQQVIEAYGEILKTLTFDRIAGIPYGSLPTATGLSLLLNHPMIFPRKEVKAHGTRRVIEGNFQVGETVVVVDDILISGKSAIEGAEKIKSAGLLVNDIVVFIDHGGPVKDKLRSHGYQAYSVLTLAEITDTLYEAGRLTEAEYSCFLNRSH
>AP019314.1|BBH37979.1|495665_495950_-|hypothetical-protein
MKEFLISLLEMFGLAYWVEIKTDYPRCTYYFGPFLAKDEAEVAQAGYEEDLKTEGAQGIKLHIKRCKPEDLTIFEEKEESKLLNTLKVLRSQAS

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Crispr_ID: AP019314_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_4

527534-527637

Orphan

Consensus_repeat	Method
CCCGCACAGTAAAATCGGACAAAATCAATTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_4

>merge|AP019314|4|527534-527637|CRISPRCasFinder
CCCGCACAGTAAAATCGGACAAAATCAATTTCTGGTGGGGTAGGGTTGATTCATGAATCAACCCTACAGATCCCGGACAGTAAAATCGGACAAAATCAATTTCT

>AP019314|4|4|527534-527637|CRISPRCasFinder
CCCGCACAGTAAAATCGGACAAAATCAATTTCT	GGTGGGGTAGGGTTGATTCATGAATCAACCCTACAGAT
CCCGGACAGTAAAATCGGACAAAATCAATTTCT

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH38007.1\|528214_528403_+\|unknown-protein	unknown	unknown	gnl\|CDD\|350304
AP019314.1\|BBH38009.1\|530510_531749_-\|cytosine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|273211
AP019314.1\|BBH37995.1\|510514_511471_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753
AP019314.1\|BBH38006.1\|527996_528218_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38015.1\|535111_536098_-\|thioredoxin-like	unknown	unknown	gnl\|CDD\|240599
AP019314.1\|BBH37998.1\|517044_518730_+\|dihydroxyacid-dehydratase	unknown	unknown	gnl\|CDD\|234861
AP019314.1\|BBH38012.1\|532901_533549_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311102
AP019314.1\|BBH38011.1\|532684_532927_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376616
AP019314.1\|BBH38003.1\|524292_525414_-\|transposase	unknown	unknown	gnl\|CDD\|379382
AP019314.1\|BBH38002.1\|522254_523868_+\|hydrophobic-amino-acid-uptake-ABC-transporter	unknown	unknown	gnl\|CDD\|380492
AP019314.1\|BBH38004.1\|525730_526888_+\|transposase	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH38001.1\|521124_522045_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272930
AP019314.1\|BBH38008.1\|528944_530441_+\|transposase	unknown	unknown	gnl\|CDD\|290319
AP019314.1\|BBH37996.1\|511600_512554_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH37997.1\|512694_516744_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
AP019314.1\|BBH38014.1\|534035_534620_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
AP019314.1\|BBH38010.1\|531797_532565_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH37999.1\|519544_520411_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
AP019314.1\|BBH38013.1\|533548_533974_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38000.1\|520655_521090_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH38007.1\|528214_528403_+\|unknown-protein	gnl\|CDD\|350304	cd18737, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.13775e-10
AP019314.1\|BBH38009.1\|530510_531749_-\|cytosine-specific-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	2.12745e-97
AP019314.1\|BBH37995.1\|510514_511471_+\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	8.27061e-20
AP019314.1\|BBH38015.1\|535111_536098_-\|thioredoxin-like	gnl\|CDD\|240599	cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants. This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	3.53129e-51
AP019314.1\|BBH37998.1\|517044_518730_+\|dihydroxyacid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
AP019314.1\|BBH38012.1\|532901_533549_-\|hypothetical-protein	gnl\|CDD\|311102	pfam06951, PLA2G12, Group XII secretory phospholipase A2 precursor (PLA2G12). This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (EC:3.1.1.4) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids.	3.43058e-05
AP019314.1\|BBH38011.1\|532684_532927_+\|hypothetical-protein	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	2.48257e-29
AP019314.1\|BBH38003.1\|524292_525414_-\|transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.91425e-24
AP019314.1\|BBH38002.1\|522254_523868_+\|hydrophobic-amino-acid-uptake-ABC-transporter	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	1.07121e-55
AP019314.1\|BBH38004.1\|525730_526888_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.74925e-37
AP019314.1\|BBH38001.1\|521124_522045_+\|hypothetical-protein	gnl\|CDD\|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	1.62442e-60
AP019314.1\|BBH38008.1\|528944_530441_+\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.64282e-34
AP019314.1\|BBH37997.1\|512694_516744_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	4.35332e-16
AP019314.1\|BBH38014.1\|534035_534620_-\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.6724e-39
AP019314.1\|BBH37999.1\|519544_520411_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.63414e-18
AP019314.1\|BBH38000.1\|520655_521090_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.24956e-32

>AP019314.1|BBH38004.1|525730_526888_+|transposase
MPAKDFLDLEEKKNLQKALKEEERAEVRERILMFLLLNDGKTQREIAEFIGCSLKTVAPWCVHGDPNNIESLEDGRKNGNHKKATEEYINLLLKIVDEDPKELGYEFGRWTAARLAEHLEKETGIKLSGSQVRRILRRKKYVYIWAKYSLEDKQDKKLRKAFKEKLDEYLKLAKEKPESIQVWFWDGAFKVATQVRHTAPHECGFSLRVIRRRAWTKKGKRKKVNGQRKRGRVNVMGALRYNDKKRVCFMIKKGNSETFHEQLKKLHEEIRQEWINLGNLPEDFREKGPKIIIILDNASYHKKKDVIEQVEKELPNIRLEFLPAYSPDYNLIELVWHSAKEYIANREFENKEELEKVVNQLLNEGGLIIKWSRKLKNKGNAVNVT
>AP019314.1|BBH38003.1|524292_525414_-|transposase
MISDRQPFKYMLSLIEKLKQVKDFRKDKGKRHPLWIVLVVIILGTMLGYSGYRELGEFAKNNRHRLSQEFNIIPERVPSYSTIRRVMMGVEWQILLKMFNEWALQEYGQRSDINWLDIDGKSLKNTLKNPNNEQQNFIMFISLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCTLQNKVFTGDALHCQKKTISLIAKSKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVSKNERQGFENLRRIIKVERRGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>AP019314.1|BBH38002.1|522254_523868_+|hydrophobic-amino-acid-uptake-ABC-transporter
MTTWQCDGIPKDGKTYPQAIAGGHEPCDNTTPDCPICGLPREAMDPVTTTVKTTVVVSPGGTTRVGQKSNWLLPFALIITALTAGLGGWSLLQMLIPKPDTSPVVLEETPDKQTKATFVSNTAKNPDLFSQGEKILLNSTPNKEKGAAAFKKEDWANAIAAYQLAATPQANDPEGKIYYNNAKARQKGNQKTIAVVVPIANDPNSAKEILRGVARYQEEFNNSNPGNPLEIVIANDGGGLQSKAIADDLIQSGQVLAVMGHGIDPFSQKAIESYEKEGLAILSPLTTSVSQTGNATLKTIPLKDKSQEVLGSYLEAVAKTLANYASKQENSPSVVLFYNSDSPYSQKLKDSFAKAIKEPGGKIVKEIDTTKANFNAKTAIDQAKQAGAKVVFLALSKDGDRIDQAVAIAQESSGMLLLGGNELYTPDILIQGADSIDGLVLAVPWSFQATDPFAKDALKSWRGRVSWRTATAYDSMKVLGEAIAKSSDRATVVESLNRGITLQGSTTDFNIFNQVPLVRANRGNEGPKGSQYQFDPK
>AP019314.1|BBH38001.1|521124_522045_+|hypothetical-protein
MNLSSALPTFIITLREGFEAALVVGIVLACLQKSGRSQLNSWVYRGIGAGVVASVLVGILLGGILLQVDASPSPFVPMLKELLAATFGLIAVLMLSWMLIWMTQQAKSLKSEVESAVKAGLKAKNGAGKAIFLLVFIAVLREGFETVLFILAQFQKDWQIQTFGAIAGLSVATLLGTLLFAGGVKINIRLFFQIMGTLLLLIVAGLLIGVLKHIDAGISLLSEIDPFYRHFCPSLPSSCLLGFQVWDGSQILSDRTFPGLLLKSLFGYRQNLYISQIVAYILFLLLIGGLYFQSLRQRPQTVTSDQ
>AP019314.1|BBH38000.1|520655_521090_+|bacterioferritin
MRELDRDKTIEQLNEIMEFELAGVVRYTHYSLMVTGPHRIPIVQFFQTQATESLTHAQQVGEILTGLEGHPSLKIAPIEESYEHNIKAILSESLNHEKKSLDLYKALLETVEDASIYLEEFARGMIGQEELHNLEIRKMLRDFA
>AP019314.1|BBH37999.1|519544_520411_+|tetratricopeptide-repeat-protein
MTMTYLFTVYRALECRPDSYRDWYDQGNILKERMDYFGALISYEKALEYYPDDYWAWYKRGMILEDLGMYEEAAQSYANAAQVKDDNYWAWYDQGCVYLQELKDYEKAIACFQRALSHSPGDYWAAYRQGEAYRLLKNYERAITFYDLALGARPRDYWAWYRRGDAFRDWGNPQEALFNYRTALDIRPQDYWSWYQQGVILQELQRLPEAIACYEESLKIDQDDRYAWYNAACCYAALGQQEKAIDCLREALDIEPDICGELVRNNFVFDGLRQNETFNDLLSCYSPG
>AP019314.1|BBH37998.1|517044_518730_+|dihydroxyacid-dehydratase
MADNYRSRIVTQGTQRSPNRAMLRAVGFGDEDFSKPIIGIANGFSTITPCNMGINDLAMRAEAATRLAGGMPQLFGTITISDGISMGTEGMKYSLVSREVIADSIETVCNGQSLDGVLAIGGCDKNMPGAMIAMARMNIPAIFVYGGTIKPGRYKDCDLTVVSSFEAVGQYSAGKISEEDLIGIERNACPGAGSCGGMFTANTMSSIFEAMGMSLPYSSTMAAEDAEKADSTEESAKVLVEAVRKQILPSQILTRKAFENAISVIMAVGGSTNAVLHLLAISRTIGVELSIDDFETIRQRVPVICDLKPSGRYVTVDLHKAGGIPQVMKILLVNGLLHGDALTISGQTIAEILADIPDQPPSGQDVIRPFSNPVYKEGHLAILKGNLATEGSVAKISGVKTPVITGPARVFESEETCLEAILAGKIQAGDVVVVRYEGPVGGPGMREMLAPTSAIIGAGLGDSVGLITDGRFSGGTYGMVVGHVAPEAAVGGTIALVEEGDQITIDARQRLLSLNVSEEELTRRRNHWQPRPPRYKTGILGKFAKLVSSSSLGALTDLNLF
>AP019314.1|BBH37997.1|512694_516744_+|hypothetical-protein
MTSSLLPILPVVDDVLFDFAQSDGFWANLAIAFGTSYDVVKATQLRQQWQSRNFSQIPPIEVLSDEVLGTANGAYASSTNKIYLSASFLNTASSASIVNVILEEIGHYVDAQVNQVDSAGDEGAIFAELVQGNSLDVATLDALRAENDQTTIIVNGEIIQVEQADFTGTNGNDSITGTSGDDNISGLDGNDTLSGLGGWDSIYGGNGNDSLNGGDGNDYFTNDAGNDTINGGSGDDRYEVDYSSASSGLTMTYNTATGSGTITVGTETDTFTSIESFEGFKGTEYNDVIFGGTASEYWGALSGGSGNDTISGNAGDDRIYGEDGNDVLNGGADNDALYGGSGNDLLNGDAGDDYFTNEDGEDGNDTINGGSGIDRYEADYSYASSGLTMTYNTATGSGTITVGTETDTFTSIENFNGFKGTEYNDVIFGGTAVEALKGGGGNDTISGNAGDDYIYGEDGNDVLNGGVGNDDIYGGNGNDLLNGDSGDDYFTGDEGNNDTINGGAGSDSYHADYSYGSSGLTMTYDTAGSGTITVGTETDTFTSIESFNGFKGTDYNDVIFGGTAVGYGYYEYLYGREGNDTISGNAGADIIDGENGNDVLNGGDGYDYLYGGNGNDTLQGTNSGTGESDYLVGGSGSDRFILADTTKTFYDDGLTATEGTSDYAEITDFSTTDDTIQLRGSSSDYLLTVSGSTTNLYINKPGSEADELIAYISNQTALSLTASYFSYVSSPTLPSITLAVSPSSVTEDGTQNLIYTFTRTGSTTNPLTVNFSVGGTATNGTDYASIPTSVIFAANSATATVIVDPTADTTVESDETVILTLAAGTGYTIGTTTPVTGTINNDDSASISINDVTVSEGNSGTTNAVFTVTLSNPVDTSVTLNYATANGTATTADNDYTAIATTPLTFNVGETSKTITVAVNGDTKVENNETFFLNLSNLQANGRNVTITDNQGQGTINDDDSTVTSQLSINDITVVEGQNSNAILTVTVNNPSTQPISVNYTTAPINATANVDYTSKTGTITIAPNTVTATISIPILNDNLNEPDEAFTVTLSNAVNATINPDEAIGQVIITDTLQSSITRTLPNNVENLRLIGSNNINGTGNAGDNKITGNSGNNILAGANGNDIYCFNASTPLGSDTIQETTTGGIDTLDFTGTNTAVRVNLGTTAVQTAVTNNLKLTFSANNTIENIISDSGNDRLTGNSLNNTLTGGGGNDQLTGQNGNDRLIGGFGDDLLTGGNGSDNFIFNSSNLGIDAISDFTPGSDKIVLSKAIFTALQSSIGNGFSQPAEFASVADDDLVATSSAFIVYSNSSGSIYYNQNGSAAGLGSGSEFANLLTVPTLIAADFALIN
>AP019314.1|BBH37996.1|511600_512554_+|hypothetical-protein
MTNPNTDFDTPWKDVLEIYFEDFVSFFFPQAHAGIDWNQGFEFLDKELQQVVRDTELGKRLVDKLVKIYRMAGEETWVLIHIEIQGQREIDFAERMFVYYYRIYDRYRRSVASLAVLGDDNASWRPNQFERELFDCQVSFRFPVVKLLEFKQQWSALAASRNPFATVVMAHLQALETRQNRKKRKEAKLALTKRLYEQGYQREDIINLFKFIDWLMSLPTELEQEFQQELNQYEEEKRMPYITSVERMGMEKGMIQKARESVIDALEIRFENVPSELVDEISQIQDTSLLKNLHRQAITLDSISDFQGYLNQLIKPE
>AP019314.1|BBH37995.1|510514_511471_+|hypothetical-protein
MTNNIDHDRLFKELISTFFVEFIELFFPQVMDYLDRDSITFLDKEVFTDVTEGERYESDLVAQVRFRGKESFFLIHLEAQQSSRLGFNRRMFTYFARFHEKFVLPIYPIVIFSYSKPKRAAISQYVVDFPDFKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLNPAKMELISGFIDTYLNLNPVEEIQFQEEISTFSQPVQEGVMQITTSWMRQGIEQGIEQGIERGIERGIEREKTLILRQLKRKLGEINPLLETQIMELSIDDVEALGEALFDFSAVEDLINWLNTLTA
>AP019314.1|BBH38006.1|527996_528218_+|hypothetical-protein
MNSYQTYLTIDHSQKIILSNLPFKAGTKLAINIQVVEDEKTEADFEALLDKTKGIWTKGDGLEYQQKIREEWI
>AP019314.1|BBH38007.1|528214_528403_+|unknown-protein
MKRLIDSCILIDHFNGITQATVYLKAHRDESYISVITKAEVLIGFNDNNSFEKAGELLSHFP
>AP019314.1|BBH38008.1|528944_530441_+|transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGAPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSAYSNEPQFEASMLVHFRERITRELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETIKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>AP019314.1|BBH38009.1|530510_531749_-|cytosine-specific-methyltransferase
MTQVNLQKAANILGVTTAEILTWQKKKLIKGQKINQVDWLFDLEQLTNLKNNQFPGELKILQTVEPTNYTVIELFAGCGGMALGLENAGLKTQLLVEINQDCVNTLRLNRPQWNVINQDIKKIKFSNFRDKIDIVAGGFPCQPFSYAGLGKGLEDLRGSLFFEFARCLQEVQPKIAIAENVRGLLSNKKGETLQLMLEALQEIGYYAAYQVLSAQFLDVPQKRERLIIIATRQDLNIKPIFPQYRNYTISLKKALENCPSSPGVEYKERKKEIMSLVPPGGNWRNLPMDIQKEYMKNSLKNHGGRTGYAKRLSWDEPALTITCSPAQTQTERCHPQETRPLTVREYARVQSFPDDWQFTGNLTSQYRQIGNAVPVNMAYHLGGCLINMLQGDYIGETQPKTEQLSIPGLEVN
>AP019314.1|BBH38010.1|531797_532565_-|hypothetical-protein
MSYRHNLTQLLEEINLQKPSIKIPTFVTHDLVDTYQICRLIDDFIFEYFQENRKTDTDIADNRDQKIDDALDEFQSKVVEKILKEKQDFKNISLKKKKGFKNIFEFAQCENLYLSNKYVNLISESLGHTLEEIASISSQVFVPEKILNFKIKGVDLVVFNQGIIKYTQLKTKKDTLTGSQSDRSINELKIHPNSVFAAALDMGNSWTISKTKAKENNIELLAGQAFWSMLDLDYETILNKLKMTVRKIEKKLYQV
>AP019314.1|BBH38011.1|532684_532927_+|hypothetical-protein
MEFNGESDHIHALIEYPPKLAISVMVNSLKGVSSRRYGQAGYPKPYGKDALWSPSYFVSSVGGAPLEVLKCYIKNQEKPS
>AP019314.1|BBH38012.1|532901_533549_-|hypothetical-protein
MKTTLSRSVMKSEFGKLTSRMALMSISNCVTFLFISTSFLLLIEPVKAQDCGSKNGISIPCWDDFKDSDEGSESLPFYPYAKRPNGCSIPGGRPGEYDNFGSLGYDFSFREPCNNHDRCYYTLGTDANDCNTRYRAELFQVCHNGASQPLKPQDFFTGGASRAAVIENCLTRADFMSQAVFAVQHRYHTEAQNAQADYRKFGLKPRPFRTAFPDF
>AP019314.1|BBH38013.1|533548_533974_-|hypothetical-protein
MLKKSLSMTITIATLLVVLWQTEGATQSSGREIACSQIINDFKDGTLTTKWNNGRTHREKVFFTAGTNGVYLNWENSQDRFLIKTNGSAFELVRGQNWQTYRGTRRATDIPGVNIERSAYSYPDQVAGTFLLRLSYSRRVP
>AP019314.1|BBH38014.1|534035_534620_-|hypothetical-protein
MIAIKENFPQLTPEEYFAWEEKQLEKHELIDGQVYTMSGGSKNHSLISVRFITLFSNHLESTGCEVGNSDLRVNIVETTNYTYPDVSVTCDDHDKTTTQYITYPCLIVEVLSPSTESYDRGGKFRMYRKNLVLQDYLLVSSTSIEMDLYHKNDAGEWLIINYQEGDTVELKSINLSFPIEQVYRNLDLTPETTP
>AP019314.1|BBH38015.1|535111_536098_-|thioredoxin-like
MRRRSVPWIHRYSRPLIGGVSIVGAILTGYLTITKLTGGAAACTAGATDGAGCTGVLNSPYATVFGLPLSLFGFLAYIAMAVFALSPLFINGETQKNLRKSLENNTWLLLLAGATAMAVFSGYLMYILATELKELCPYCITSALFALTLLILTIVGREWEGLGQIILPMVVVAMITLVGTLAVYTGVNSPTVTGGKEEITRPMTAATPPYGWEVTTVSGEAEIALAKHLKAIGAKEYGAFSCPHCYDQKQLFGKEAGEILKKEGVYIECAPQGVNGNPQACRDAGIKGFPTWIIRGQEYSGTQRLEKLAEISGYTGPMNFKYTVPGRK

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Crispr_ID: AP019314_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_5

560540-560636

TypeV

Consensus_repeat	Method
TCAGTAAACAGTAAACAGTAATCAG	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of AP019314_5

>merge|AP019314|5|560540-560636|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAGTAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTTTCAGTGGTCAGTAAACAGTAAACAG

>AP019314|5|5|560540-560636|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAG	TAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTT
TCAGTGGTCAGTAAACAGTAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH38025.1\|544958_548423_-\|adenine-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|227226
AP019314.1\|BBH38032.1\|554323_554656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376852
AP019314.1\|BBH38044.1\|569544_570147_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
AP019314.1\|BBH38034.1\|559629_560517_-\|succinyl-CoA-synthetase-alpha-chain	unknown	unknown	gnl\|CDD\|223152
AP019314.1\|BBH38036.1\|561627_562491_-\|cyanophycinase	unknown	unknown	gnl\|CDD\|131124
AP019314.1\|BBH38029.1\|553376_553604_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224937
AP019314.1\|BBH38035.1\|561121_561538_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38043.1\|569060_569516_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335963
AP019314.1\|BBH38037.1\|563874_564351_-\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|283241
AP019314.1\|BBH38026.1\|548667_551070_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239796
AP019314.1\|BBH38033.1\|554724_559329_-\|ferredoxin-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|236968
AP019314.1\|BBH38027.1\|551764_552211_+\|cytochrome-b6-f-complex-alternative-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|239550
AP019314.1\|BBH38030.1\|553614_553815_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38041.1\|565799_566843_+\|transposase	cas14j	-	gnl\|CDD\|223747
AP019314.1\|BBH38039.1\|565146_565449_+\|transposase	unknown	unknown	unknown
AP019314.1\|BBH38031.1\|553772_554144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365904
AP019314.1\|BBH38042.1\|566901_568056_-\|transposase	unknown	unknown	gnl\|CDD\|376574
AP019314.1\|BBH38038.1\|564643_564826_-\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
AP019314.1\|BBH38040.1\|565582_565789_+\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH38028.1\|552484_552967_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH38025.1\|544958_548423_-\|adenine-specific-DNA-methyltransferase	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	1.00792e-24
AP019314.1\|BBH38032.1\|554323_554656_-\|hypothetical-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	8.60407e-07
AP019314.1\|BBH38044.1\|569544_570147_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	0.00428084
AP019314.1\|BBH38034.1\|559629_560517_-\|succinyl-CoA-synthetase-alpha-chain	gnl\|CDD\|223152	COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion].	1.67294e-80
AP019314.1\|BBH38036.1\|561627_562491_-\|cyanophycinase	gnl\|CDD\|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	1.45542e-112
AP019314.1\|BBH38029.1\|553376_553604_+\|hypothetical-protein	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.20295e-11
AP019314.1\|BBH38043.1\|569060_569516_-\|hypothetical-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	1.1198e-05
AP019314.1\|BBH38026.1\|548667_551070_+\|hypothetical-protein	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	0.000115672
AP019314.1\|BBH38033.1\|554724_559329_-\|ferredoxin-dependent-glutamate-synthase	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
AP019314.1\|BBH38027.1\|551764_552211_+\|cytochrome-b6-f-complex-alternative-iron-sulfur-subunit	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	5.4036e-14
AP019314.1\|BBH38037.1\|563874_564351_-\|CsbD-like-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	3.79773e-09
AP019314.1\|BBH38041.1\|565799_566843_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.10903e-57
AP019314.1\|BBH38031.1\|553772_554144_-\|hypothetical-protein	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	5.5075e-40
AP019314.1\|BBH38042.1\|566901_568056_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	9.29671e-73
AP019314.1\|BBH38038.1\|564643_564826_-\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	2.22153e-07

>AP019314.1|BBH38034.1|559629_560517_-|succinyl-CoA-synthetase-alpha-chain
MKWTDKDQIIMQGIDRPLGKYYAARLKAQGTCLVAGVASGCGGEIIAEIPVFDLVAEAVAEAGEIKTSLILVPPNQVLDAALEAIAAAIPQLIIVTPGVPPLDLVELLKIASTTGTLILGPGSQGVIIPNYLWLGICEPNFYQSGTIGLITRGDRIGDEVAKTLTAAGYGESMAVNLGTDGIIGSNLSQWLQVFEEDDNTEAILLVSQVGGKAEIEAAKYIASAIEKPVIAYLVGLNAAIETNFGDTETIISNQLSYSVAAKNTRKDSLRHFQEAGVIVVEKLADLPASLAKALS
>AP019314.1|BBH38033.1|554724_559329_-|ferredoxin-dependent-glutamate-synthase
MAQQNNLKTDNIHQIDPYCGPRWLVEERDACGVGFIADVRGSGSHQLIEQALLALGCLEHRGGCSADQDSGDGSGMMTAIPRDVLAPWFAENGLNMPESERLGVGMVFLPQADQERADAKAHIEEIVNKYNIKILGWRAVPVRPEVLGRQARENQPYVEQILVTSPDLAGSQFDRLLYIARSEVGKQLADDFYFCSFSCRTIVYKGMVRGEILREFYLDLQNPAYSSQFAIYHRRFSTNTQPKWPLAQPMRLLGHNGEINTLLGNINWMSAREPALETEGWTHEELQSLTPIVNPANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYNNQPDLQDYPEIIDFYEYYSGLQEPWDGPALLVFSDGGIVGACLDRNGLRPARYSITNNGYIVVSSEAGTIPLDETTIIEKGRLGPGQMLAVDLEKGEIKRNWPIKQEIARSNPYGEWVKSQRTFIDKETAIDIPAPSHLLPLQTAFGYTAEDVDMIIVPMAEQGKEPTFCMGDDTPLAVFSSKPHLLYDYFKQRFAQVTNPPIDPLRESLVMSLTMYLGRRGNILKLGVDDAHLLKLDSPLLNNAELAKVKTSSYKTAELSTLYDLTTGPQGLETAIAHLCAEAAKKVASGAEILILSDRTAPIDEKTSYIPPLLAVGAVHHHLIRSHLRLKASIVIDTAQCWSTHHFACLIGYGASAVCPYLALETIAQWWIEPKTQKLMENGKLEAISLEKALINYRKSVEAGLLKILSKMGISLLSSYHGAQIFEAIGLSADLVKLAFNGTTSRVGGLSIAEVAQEAIAFHSKAFPNLTAKKLENYGFVNYRPGGEYHMNSPEMAKALHKAVAAHSQGEGYDHYETYRQILQQRPVTALRDLLEFNSDRASIAIEEVESIESILQRFCTGGMSLGALGREAHETLAIAMNRIGGKSNSGEGGEDPIRYTSLSDVDAEGHSVTMPHLNGLKNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSSYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPRAKVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRMLMENQLRHRVILRADGGLKTGWDILMAALMGAEEFGFGSISMIAEGCIMARVCHTNNCPVGVATQQERLRTRFPGIPAHVVNFFTLVAEETRQLLAKLGYHSLNEVIGRADLLKVRSDARLTKTESLNLDCLLNLPDGRSDRSWLQHEEVHSNGAVLDEEILADSEIKQAIEQQGTVSKTYRIVNTDRSVGARIAGVIAQKYGNDGFEGEIKLNFQGAAGQSFGAFNLPGVNLHLEGEANDYVGKGIYGGEIVIVPPQNANYQPEDNAIIGNTCLYGATGGVLYANGRAGERFAVRNSTAKAVIEGAGDHLCEYMTGGVIVVLGSVGRNVGAGMTGGLAYILDPSLPEKLNPEIVKIQRVGTAAGAEQLKSLIEAHVERTNSPKGKLILANWDSYLGQFWQVVPPSEADSPEAQISAEKTLTSV
>AP019314.1|BBH38032.1|554323_554656_-|hypothetical-protein
MAMLPIPTTYTSYTQAQEHFLQVLEQVELGNSIVIVQRQGHHDVALIAADELSALLEEVYLLRSPANAQRLFQSLNWSQERLSQTAATTSLEELRQELETEIEQEKAAEV
>AP019314.1|BBH38031.1|553772_554144_-|hypothetical-protein
MTNEKLRFIDLFAGIGGFRLAFESVGYDCVYSCEIDENCRKVYFNNFQEIPDQDIRKIAIHDLPDFEVLTAGFPCQPFSISGKRAGFRDTRVTLFFHICEIVELEQDTSNQSIFSIFLTSSRE
>AP019314.1|BBH38030.1|553614_553815_+|hypothetical-protein
MIELHPEFLIKNGKKEFAVLTYEEFMKIKEILEDLEDLEDLIQAKEEEKDSQTYSLDEVKKMLNID
>AP019314.1|BBH38029.1|553376_553604_+|hypothetical-protein
MKYQIQFKPKAIKDLEKLSSQDRTRIMAKIEAMKDNLQGDVKQLKNFTPNYRLRVGNYRILFEVEEITLKYLQLN
>AP019314.1|BBH38028.1|552484_552967_-|hypothetical-protein
MNPLVNYFRNLHEIHSSQAAVKETSYYGTLETLLNEIGKTLKPRVRCIINLRNQGAGLPDGGLFNVDQFPKNQELEPFTAIFPERGAIEIKGTKEDIKKIAASEQVQKYWQKYGQVLVTNYRDFLLIGRNSQGQPVELEAYSLAPSEAEFWLKTSNPSID
>AP019314.1|BBH38027.1|551764_552211_+|cytochrome-b6-f-complex-alternative-iron-sulfur-subunit
MEKPNPMNRREFVALVGVGGAMACAPEILGTATDQEMTPAQAADGFVKVTGITLKELEAKGSFLDKKSPVGSLLLIWEKKTKKISAVNPTCTHEGCTVKWDTGAQILACPCHTGKFTATGVVTNKPPKGNLTTYQVKVEKDVIFVKKA
>AP019314.1|BBH38026.1|548667_551070_+|hypothetical-protein
MADFLDFVVRDSLLNTLTITLLSTDLEQIDEGTRHGIDAQIDDTDPLGRKGAILAESAQENGLKTGNSQSVSLNTSQSLSSLVSSNLQHIAGCNCSFCALPPFDPNLVKNQPKQSAATVSAALNLSQTFSLNSLAGANHTIYLDFNGHTTSGTSWNTSFNKANIVTPAFDFDGNTGSFSNAELERIQYIWQRVAEDFIPFNVNVTTQAPTNINDLIKSGSGDTRWGVRVAIGGSSYDWFGAGAGGVAYVGSFNWNSDTPTFVFDDQLGNGNEKYTAEAISHEVGHTLGLSHDGRITPSEGYYAGHGSGDTGWAPIMGVGYYQNLSQWSKGEYASANNTQDDLQIITTQNGFGYRTDDTGNTIATAKALTVSGASVSGNGIIERNTDVDFYSFTTGAGAISLTVNPFNRGPNLDILAELYNSAGTLIASSNPTDLLSANITANVAAGTYYLKIDGIGKGNPLTTGYTDYGSLGQYSISGSIITPNLLTMQRWATGQGGFWDAQKWLAGDFNGDGKDDVAKAFNQGGLGSVDVHVSNGSSFSMQRWATGQGGFWDAQKWLAGDFNGDGKDDVAKAFNQGGLGSVDVHVSNGSSFSMQRWATGQGGFWDAQKWVVGDFNGDGKDDVAKAFNQGGLGSVDVHVSNGSSFSMQRWATGQGGFWDAQKWVVGDFNGDGKDDVAKVFNDNGLASVDVHVSNGSSFSMQRWATGQGGFWDAQKWVVGDFNGDGKDDLAKAFTDGGLASIDVHLSTGSGFGMQRWATRQGGFWDAQQWLAGNFNGDGKGDLAKAFNEGGLGSVDVHTLI
>AP019314.1|BBH38025.1|544958_548423_-|adenine-specific-DNA-methyltransferase
MNPLVNYFRNLHEIHSSQAAVKETSYYGTLETLLNEIGKTLKPRVRCIINLRNQGAGLPDGGLFNVDQFQKNQELEPFTAIFPERGAIEIKGTKEDIKKIAASEQVQKYWQKYGQVLVTNYRDFLLIGRNSQGQPVELEAYSLAPSEAEFWLKTSNPSKFAAEHGDSLLEYLKRVLLQAAPITSPADVAWFLASYARDAKARLEHHSDLPALANIRQALENALGIKFEREQGNKFFRSTLVQTLFYGLFSAWVLWHKQNLNREDKEDKFDWKSAAHHLHVPMLAILFEQIAAPSKLKSLGLVEVLNWTGAALNRVRREEFFRQFDEGQAVQYFYEPFLQAFDPDLRKELGVWYTPPEIVRYMVARVDRVLREELNIEDGLANPDVYILDPCCGTGAYLVEVLRYITDTLQENGAGALAMALVKKAAIERIFGFEILTAPFVVAHLQLGLFLQSLGVPLIEDSERVGIYLTNALTGWQPPDEESKQKIQQLQLSFPELNKEREAADEVKRGKPILVILGNPPYNAFAGTSPAEEAGLVEVYKQGLISDWGIKKFNLDELYVRFFRLAERCISENTGKGVVCYISNFSYLGDPSFVVMRQRFLQEFDRLWFDCLNGDSRETGKLTPEGNPDPSVFSTQYNKEGIRVGTTIGLMVRKEVRNKNVDVYFRHFWGVAKREQLLDSLNNQDFDALYQVSNPEQSNRYSFRPSDVSSHYLAWPKLTDLSDEAPITGYKENRGYSFIDSDKTILSERISKYFDQNVSWEELASLNTGLTKNAARFDAKKARDKVLKLRKKFNPQMLLPYLLRPYEVKWCYYTQIRPLWNESRPSLFIHQFQGNSFLVSRPAGVASPEGIPFYFTNCLGDFDFIRGHAYHFPIRLRQNSEKVNTEDNTQGKLFDSSNFNSPSIKANLSEKSRQYLNQLGINNIDENIENASLIWLHSLAIGYSPLYLRENADGIRQDFPRIPLPNSQELLIKSAQLGQAIASLLDTENPVIGVTKKPTPALQKIALISCTDGGNLNPDKGDLIINVGWGHGGKNGVTMPGKGKAIARQYTTAEMSVISPEMRKLLGTTTYDIYLNDRAYWQNIPSRVWEYTIGGYQVIKKWLSYREEKLLGRGLTIAEVQEVSEMTRRITAIILLESDLDDNYQNIKTAVYSF
>AP019314.1|BBH38035.1|561121_561538_-|hypothetical-protein
MNHDRDDETNLERRQELLHDEEAFRLDQEEKRLRSARRSNTLNWIINSIFGLAGIGQILLVMRFLLRLFGANPQNQFAQLINHLSAPFIAPFSTLFISPASSGGANIFDVNIVIAIVAYALLSYTLHGYNLHFFLKSL
>AP019314.1|BBH38036.1|561627_562491_-|cyanophycinase
MESTKERGQLIIIGGAEDKEGDCQILREFVRCAGGTKAKIAVLTAATSEPRSAGETYTRVFERLGVEDVRVLDTIHREDADDPENLKIIEEATGAFFTGGDQALIIEHIKGTQLDALLHQRNREGMVVGGTSAGAAIMPDLMIIEGDSETNPRMDAIEMGPGMGFLHSVVIDQHFAQRGRLGRLISALLQQPANLGFGIDEDTAVIVDGDEFKVVGRGAVTIVDESEATYDNLDELLKDEAMAVCGVRLHILPQGFRFNLKTRKPVFSRSIELKDSNPKKEAEVERE
>AP019314.1|BBH38037.1|563874_564351_-|CsbD-like-protein
MSLQQIRRFFVTIILTIMLAITIAFDFGTTNSWAATLPTQSQTQIASMNRAKAVTKNIEGKAQEAIGNMTGDPKDQMMGKAKQVESQARNAAEDIKDQMKLKGRAKAVTKNIEGKAQEAIGKATGNRQDQVAGKAKQVESQVRNAVEDVKDTVQDILN
>AP019314.1|BBH38038.1|564643_564826_-|CsbD-like-protein
MSLKDRTEATAKNIEGKVQEAVGDLTGDSKAQAEGKEKQAEAKVRHTIEDVKDEVKKIID
>AP019314.1|BBH38039.1|565146_565449_+|transposase
MRNITKPTTAQCNLAIYTLFLLGEPKYISCVRLAQILGNLSHDSVNRFLWRENYTPKDLFDEVAPQIELEGGTISTDDMVIDKPYSHPAKAELIDYFYWW
>AP019314.1|BBH38040.1|565582_565789_+|unknown-protein
MLDEVKAWGLKPETVTGDSWYAAKETMNTLKDKGFRGLFAPHRKFGSETPSFYDGFTVKYEHRLRNIC
>AP019314.1|BBH38041.1|565799_566843_+|transposase
MEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHVRTQAWYERQERVGYAQTSSMLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDKQIYLAKCTEPLPIRWSRQIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSLVITSDGDKVSNPKHFKKHYRRLRKAQKSLSRKQKGSKNREKARIKVAKIHAQITDSRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIALENAVKCSRMGLSRLWNTP
>AP019314.1|BBH38042.1|566901_568056_-|transposase
MWINFDQLLDLPNVTVVNYQKIAQTIFLKLALLNETIECPNCHQTLDRINQTEYNLVRDLSILGNPVYLEVPRRQFHCQKCQKYISERLSFMRLRQHHTIRYESMIYERVKNCSIEEISREEGLGWEEVELIFNHCAKELEKEEWEAPERISLDEFSNLKGHKDFITTVVDMDKKILLDVIKGHKQEELMEALKARPVAVREKVKEVSVDMWSGFTAVIKELFPNAKIIYDRFHVMAIINDELNNLRKLMGVHEKGLPHLLWKNKEDLKDEQKQQLEVILKEHPCLGIAWEMKEEIRQIYQSSKTFRGAERKLEKWIRIGGILYESSASMIQKHLQGICNYFENHTTNGLIEGMNTKIKLIKRMSYGFTNFEHLRLKLFACFNS
>AP019314.1|BBH38043.1|569060_569516_-|hypothetical-protein
MKKITTLILSSLLLIGTVACENNAKTSTNAPSSTEETGQVPDTKTVQKNQSDASSQVRRNQLNSDIRAREQRNNLTGGDADRANSDLSSEVRSKLEANIPKGQLTVSAKDGAVVVSGTVETQEQLDKIDPLAKQIKGVNSVKVTAKVALSN
>AP019314.1|BBH38044.1|569544_570147_-|hypothetical-protein
MTLTNRKRAVGIFSSYQEAEKALNGLRDDGFAMNEVSIIAKEPERLEQSNRIGETRVQELTETKTTHIDEGAKTGAAAGGAIGGLTGLLVGLGILAIPGVGPVMLAGAAATAIATTLAGGAIGTATGGLVGGLIGLGIPEDRARVYHDYVVRGDYLLIVDGADADILQAETILKRRGIREWEIYNALAIEGYVDPPASRL

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Crispr_ID: AP019314_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_7

717767-721204

TypeI-D

I-D,II-B

Consensus_repeat	Method
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRT

47 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7

The CRISPR arrays of AP019314_7

>merge|AP019314|7|717767-721204|PILER-CR,CRISPRCasFinder,CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTAAATTACCGGCAAAATTTTGCCAGTCTTTCTCTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCAAACATGATACTAATTTTTTGACTTTTTGCCCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAAATTAGTGACTTTTTTTCGGTGGGTGAGGTTACGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTGCTGTTCAAAAGGGATATTCCGCATTTCGATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAATCGAGAAAAAAACTATCGAGAATACTTAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTAATCACTTTTATTGCTGACTTTGCTGTACATCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCCTATGGATGGGCATCGGAGGGTATTAGCTTGGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCGATTAATCATCCTAAAGATATCGGCAGAACCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTCTACTACTCCATCTACCCAATAAAAAACCCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGACTAGGAACATCAGCATAAGTTGAAAACAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCAAACACTAGCTTTTACAAAGCAACCAGCTCGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGCATGGAAAAACTAAGCGAGTTAACATCAGAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACCCTGATTCTAATGCAAGAGAATTGACTTCTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGGCATTCTCTATCGGCGCGTCTCCGATAGACTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGAGAGCTATCTTATCCCTTACCAGACGGAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTGGAACTTCGCTTAGATGCCTTATTGGGTAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTAACAGAAGCAGAAGCTCAAAAAGTCTTTGAAGAAAAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAATAGTGATGGAACACCTCGCAAACGAGTAAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCGGCTGCATACATATAGCACCAATCAGGCTTGCCACAGTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGATTTACTGTGTAATAGTAATTGTGATGAGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCTTTAGCCGATTTAATTCCTATGATTTTGGGATTCTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCCTAAGTCAGCAAAGTTGTTGATCGTTTTTTCCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTTTACCCTGTATTTCAGAAATTAGAAGAAAAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAGCCCAAATACTTCCCCGTCCCGGCGCTCAATCTTAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCCCTATGTCTGACCGTTGGGCGGGGAGATTTAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGAATCTGGTTTTGGTAGTGCCACTGGCTGATATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACTTACAGGCAAATCACTCGAAATCCTGTAATTGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTACGAAAGCAACAATAGCGACGACGAGGACGATGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTAAAATCAAATCGGGTAAAGGGAAAGGGAAATTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGCCAAATTCTCCACCTCAGTCTCCCTTTCCCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTTCAAACGACTGCGCTCGATTTTATCGAGTCTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCGCATTTGGTCTGGGAGCAACTTTGCTCCTATCAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGGCAAATATAAAAGATTCTGGTTTTTAGGATTAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGTCCCTATTCCGGGCGCGTCCCATTAAGCTGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACAGGTTGTAACCAATGGCTATAAGGTGTTAACAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATCGAAGAGCTACACGCTGAAAAAGAGCGCGATAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGATTAATATTATAAAGTTCGATTGGGAGACGAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGATCATATTGACGAAATCCTTGACCTAAAAGACCGAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCACTCCCAAAAGCACGTTGTTAAAAACGCTCGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTATATCCCCACTGAAAACCTTAAGGAAGTTAAACGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAGGCTGTAAATATAGTCCTGCTTTCCATTTTTCAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTGCCTAACGAAAACTACCTAACTTTTAGCCAAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTGCCCACCCTCTAGAAGCCATAATTACCCCTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGAGCCAATCCTTAGCAGAGGCTAACACTTCTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGGGGATAAATCAGAGAATTGTAAGGGTGCGGCAGAATCAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

>AP019314|7|1|717767-721204|PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTAAATTACCGGCAAAATTTTGCCAGTCTTTCTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCAAACATGATACTAATTTTTTGACTTTTTGCCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAATTAGTGACTTTTTTTCGGTGGGTGAGGTTAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGCTGTTCAAAAGGGATATTCCGCATTTCGATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATCGAGAAAAAAACTATCGAGAATACTTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTAATCATCCTAAAGATATCGGCAGAACCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTACTACTCCATCTACCCAATAAAAAACCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGAGAGCTATCTTATCCCTTACCAGACGGAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTGGAACTTCGCTTAGATGCCTTATTGGGTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTAACAGAAGCAGAAGCTCAAAAAGTCTTTGAAGAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATAGTGATGGAACACCTCGCAAACGAGTAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGGCTGCATACATATAGCACCAATCAGGCTTGCCACAGTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGATTTACTGTGTAATAGTAATTGTGATGAGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTTTAGCCGATTTAATTCCTATGATTTTGGGATTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCTAAGTCAGCAAAGTTGTTGATCGTTTTTTCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTACCCTGTATTTCAGAAATTAGAAGAAAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGCCCAAATACTTCCCCGTCCCGGCGCTCAATCTTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCCTATGTCTGACCGTTGGGCGGGGAGATTTAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGAATCTGGTTTTGGTAGTGCCACTGGCTGATATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTTACAGGCAAATCACTCGAAATCCTGTAATTGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTACGAAAGCAACAATAGCGACGACGAGGACGATG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAAATCAAATCGGGTAAAGGGAAAGGGAAATTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCCAAATTCTCCACCTCAGTCTCCCTTTCCCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTCAAACGACTGCGCTCGATTTTATCGAGTCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGCATTTGGTCTGGGAGCAACTTTGCTCCTATCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGCAAATATAAAAGATTCTGGTTTTTAGGATTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTCCCTATTCCGGGCGCGTCCCATTAAGCTGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACAGGTTGTAACCAATGGCTATAAGGTGTTAACAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCGAAGAGCTACACGCTGAAAAAGAGCGCGATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATTAATATTATAAAGTTCGATTGGGAGACGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATCATATTGACGAAATCCTTGACCTAAAAGACCGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCACTCCCAAAAGCACGTTGTTAAAAACGCTCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTATATCCCCACTGAAAACCTTAAGGAAGTTAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGGCTGTAAATATAGTCCTGCTTTCCATTTTTCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGCCTAACGAAAACTACCTAACTTTTAGCCAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTGCCCACCCTCTAGAAGCCATAATTACCCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGAGCCAATCCTTAGCAGAGGCTAACACTTCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGGGATAAATCAGAGAATTGTAAGGGTGCGGCAGAATCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

>AP019314|7|7|717767-721204|CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTAAATTACCGGCAAAATTTTGCCAGTCTTTCTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCAAACATGATACTAATTTTTTGACTTTTTGCCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAATTAGTGACTTTTTTTCGGTGGGTGAGGTTAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGCTGTTCAAAAGGGATATTCCGCATTTCGATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATCGAGAAAAAAACTATCGAGAATACTTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTAATCATCCTAAAGATATCGGCAGAACCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTACTACTCCATCTACCCAATAAAAAACCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGAGAGCTATCTTATCCCTTACCAGACGGAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTGGAACTTCGCTTAGATGCCTTATTGGGTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTAACAGAAGCAGAAGCTCAAAAAGTCTTTGAAGAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATAGTGATGGAACACCTCGCAAACGAGTAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGGCTGCATACATATAGCACCAATCAGGCTTGCCACAGTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGATTTACTGTGTAATAGTAATTGTGATGAGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTTTAGCCGATTTAATTCCTATGATTTTGGGATTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCTAAGTCAGCAAAGTTGTTGATCGTTTTTTCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTACCCTGTATTTCAGAAATTAGAAGAAAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGCCCAAATACTTCCCCGTCCCGGCGCTCAATCTTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCCTATGTCTGACCGTTGGGCGGGGAGATTTAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGAATCTGGTTTTGGTAGTGCCACTGGCTGATATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTTACAGGCAAATCACTCGAAATCCTGTAATTGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTACGAAAGCAACAATAGCGACGACGAGGACGATG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAAATCAAATCGGGTAAAGGGAAAGGGAAATTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCCAAATTCTCCACCTCAGTCTCCCTTTCCCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTCAAACGACTGCGCTCGATTTTATCGAGTCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGCATTTGGTCTGGGAGCAACTTTGCTCCTATCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGCAAATATAAAAGATTCTGGTTTTTAGGATTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTCCCTATTCCGGGCGCGTCCCATTAAGCTGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACAGGTTGTAACCAATGGCTATAAGGTGTTAACAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCGAAGAGCTACACGCTGAAAAAGAGCGCGATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATTAATATTATAAAGTTCGATTGGGAGACGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATCATATTGACGAAATCCTTGACCTAAAAGACCGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCACTCCCAAAAGCACGTTGTTAAAAACGCTCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTATATCCCCACTGAAAACCTTAAGGAAGTTAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGGCTGTAAATATAGTCCTGCTTTCCATTTTTCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGCCTAACGAAAACTACCTAACTTTTAGCCAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTGCCCACCCTCTAGAAGCCATAATTACCCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGAGCCAATCCTTAGCAGAGGCTAACACTTCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGGGATAAATCAGAGAATTGTAAGGGTGCGGCAGAATCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

>AP019314|7|1|717767-721204|CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTAAATTACCGGCAAAATTTTGCCAGTCTTTCTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCAAACATGATACTAATTTTTTGACTTTTTGCCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAATTAGTGACTTTTTTTCGGTGGGTGAGGTTAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGCTGTTCAAAAGGGATATTCCGCATTTCGATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATCGAGAAAAAAACTATCGAGAATACTTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTAATCATCCTAAAGATATCGGCAGAACCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTACTACTCCATCTACCCAATAAAAAACCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGAGAGCTATCTTATCCCTTACCAGACGGAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTGGAACTTCGCTTAGATGCCTTATTGGGTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTAACAGAAGCAGAAGCTCAAAAAGTCTTTGAAGAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATAGTGATGGAACACCTCGCAAACGAGTAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGGCTGCATACATATAGCACCAATCAGGCTTGCCACAGTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGATTTACTGTGTAATAGTAATTGTGATGAGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTTTAGCCGATTTAATTCCTATGATTTTGGGATTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCTAAGTCAGCAAAGTTGTTGATCGTTTTTTCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTACCCTGTATTTCAGAAATTAGAAGAAAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGCCCAAATACTTCCCCGTCCCGGCGCTCAATCTTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCCTATGTCTGACCGTTGGGCGGGGAGATTTAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGAATCTGGTTTTGGTAGTGCCACTGGCTGATATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTTACAGGCAAATCACTCGAAATCCTGTAATTGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTACGAAAGCAACAATAGCGACGACGAGGACGATG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAAATCAAATCGGGTAAAGGGAAAGGGAAATTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCCAAATTCTCCACCTCAGTCTCCCTTTCCCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTCAAACGACTGCGCTCGATTTTATCGAGTCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGCATTTGGTCTGGGAGCAACTTTGCTCCTATCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGCAAATATAAAAGATTCTGGTTTTTAGGATTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTCCCTATTCCGGGCGCGTCCCATTAAGCTGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACAGGTTGTAACCAATGGCTATAAGGTGTTAACAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCGAAGAGCTACACGCTGAAAAAGAGCGCGATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATTAATATTATAAAGTTCGATTGGGAGACGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATCATATTGACGAAATCCTTGACCTAAAAGACCGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCACTCCCAAAAGCACGTTGTTAAAAACGCTCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTATATCCCCACTGAAAACCTTAAGGAAGTTAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGGCTGTAAATATAGTCCTGCTTTCCATTTTTCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGCCTAACGAAAACTACCTAACTTTTAGCCAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTGCCCACCCTCTAGAAGCCATAATTACCCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGAGCCAATCCTTAGCAGAGGCTAACACTTCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGGGATAAATCAGAGAATTGTAAGGGTGCGGCAGAATCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH38173.1\|716243_717248_+\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
AP019314.1\|BBH38179.1\|724129_725347_-\|probable-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|182528
AP019314.1\|BBH38175.1\|721502_721775_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377648
AP019314.1\|BBH38167.1\|710145_712869_+\|putative-ATP-dependent-RNA-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
AP019314.1\|BBH38183.1\|728564_728993_+\|virulence-associated-protein-VapC-like-protein	unknown	unknown	gnl\|CDD\|350315
AP019314.1\|BBH38181.1\|727145_728027_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
AP019314.1\|BBH38165.1\|708431_709325_+\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
AP019314.1\|BBH38172.1\|715644_716238_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
AP019314.1\|BBH38169.1\|713842_713992_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274458
AP019314.1\|BBH38168.1\|712916_713483_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
AP019314.1\|BBH38170.1\|714001_714568_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
AP019314.1\|BBH38180.1\|725544_726966_-\|ABC-transporter-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|273776
AP019314.1\|BBH38171.1\|714808_715642_+\|CRISPR-associated-TM1814-family-protein	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
AP019314.1\|BBH38184.1\|728997_729264_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38176.1\|721940_722306_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373239
AP019314.1\|BBH38178.1\|723637_724069_+\|mutator-MutT-protein	unknown	unknown	gnl\|CDD\|223979
AP019314.1\|BBH38166.1\|709328_710153_+\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
AP019314.1\|BBH38174.1\|717260_717533_+\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
AP019314.1\|BBH38177.1\|722430_723360_-\|NAD+-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237771
AP019314.1\|BBH38182.1\|728315_728555_+\|virulence-associated-protein-VapB-like-protein	unknown	unknown	gnl\|CDD\|226863

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH38173.1\|716243_717248_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	4.28469e-143
AP019314.1\|BBH38179.1\|724129_725347_-\|probable-ABC-transporter-permease-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	8.78214e-75
AP019314.1\|BBH38175.1\|721502_721775_-\|hypothetical-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	0.000179215
AP019314.1\|BBH38167.1\|710145_712869_+\|putative-ATP-dependent-RNA-helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.03189e-44
AP019314.1\|BBH38183.1\|728564_728993_+\|virulence-associated-protein-VapC-like-protein	gnl\|CDD\|350315	cd18748, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.9121e-83
AP019314.1\|BBH38181.1\|727145_728027_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.71933e-16
AP019314.1\|BBH38172.1\|715644_716238_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	7.02771e-55
AP019314.1\|BBH38177.1\|722430_723360_-\|NAD+-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
AP019314.1\|BBH38168.1\|712916_713483_+\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.22438e-27
AP019314.1\|BBH38170.1\|714001_714568_+\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	9.54821e-27
AP019314.1\|BBH38180.1\|725544_726966_-\|ABC-transporter-membrane-fusion-protein	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.32368e-38
AP019314.1\|BBH38171.1\|714808_715642_+\|CRISPR-associated-TM1814-family-protein	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	8.89455e-43
AP019314.1\|BBH38176.1\|721940_722306_-\|hypothetical-protein	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	1.35777e-13
AP019314.1\|BBH38178.1\|723637_724069_+\|mutator-MutT-protein	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	6.97733e-41
AP019314.1\|BBH38174.1\|717260_717533_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.91614e-37
AP019314.1\|BBH38169.1\|713842_713992_+\|hypothetical-protein	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	2.80784e-09
AP019314.1\|BBH38182.1\|728315_728555_+\|virulence-associated-protein-VapB-like-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.4271e-08

>AP019314.1|BBH38174.1|717260_717533_+|CRISPR-associated-protein-Cas2
MYFVVSYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>AP019314.1|BBH38173.1|716243_717248_+|CRISPR-associated-protein-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVEGVVIFGRGSVSPALVIELLERHIPLSFVTATGKYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMGKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>AP019314.1|BBH38172.1|715644_716238_+|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLDNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQALCLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYREED
>AP019314.1|BBH38171.1|714808_715642_+|CRISPR-associated-TM1814-family-protein
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGKILHTAEADKAFTLSPLQMQSGGKTINSPQWRYERPIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKHPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLNRWNRYSAIPFDSIALDSIFPSFFDIQTKLADEAYKNQSFGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRIAKEKR
>AP019314.1|BBH38170.1|714001_714568_+|hypothetical-protein
MTLISSKSLTLPEFLSLTAPEGDITYELVDGEAIAKMSPKFFHSRLTGALFLVLDRWNQGRGEVGIEWAIILSKNGRDWCPVPDLLYISLERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>AP019314.1|BBH38169.1|713842_713992_+|hypothetical-protein
MFTHPVIGYDVINMPPVSLIRNVRMRGEYYQISDRPDLKIPVRLSYRFG
>AP019314.1|BBH38168.1|712916_713483_+|hypothetical-protein
MTLISSKSLTLPEFFSLTAPDGDITYELVDGEAIPKMSPKFFHSRLTLALSSILDRWNQGRGEVGIEWAIILSKNDRDWCPVPDLLYISPERLGDIPLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRIWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>AP019314.1|BBH38167.1|710145_712869_+|putative-ATP-dependent-RNA-helicase
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDEPQNLWVQALARGHHDYSTKEIIKDTYQLKKDPKYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLRENGKDKELGGKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAILWWYRELANFQPNPMQEQVFQTMVENKHPAFILKAPTGVGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEIKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGRSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEWVDDIVYDVKEPTNLQQKLTSIALAEWNSNPSHRIIVSVETVKDAIAIYEKIKQKLNIKSSGQNEFLFLYHGRLSDIPKTSHYSRTNLYKRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFINTLSEAELEDYKTILKGLHARNFDPKAIMNCVSTKQKIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVPIDRLINNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKDMVIKVCAVQEGAIYDHELGFKDLPRVFIKCRSNGYQERLRYNPTEDRSVVINYTSALTQD
>AP019314.1|BBH38166.1|709328_710153_+|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKANPLPTLDFYTDGNLQIPVALVELLQGESINV
>AP019314.1|BBH38165.1|708431_709325_+|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>AP019314.1|BBH38175.1|721502_721775_-|hypothetical-protein
MNTISNFLASAIVGGWIMTMAVFAIQNIQPVSLKFLQFESIKVPIGVLLAFSLGIGFFMAAFIPAFLRKSKKSPRSRFPPPQPGLDEFDF
>AP019314.1|BBH38176.1|721940_722306_-|hypothetical-protein
MEVSKKMEKWAAQELQYAELGDTRRKKRLISIVENLASQLSTSVRKSSANLAAVSATSDFGNSPYFQPSAVRMIASLGVFLGRKGDGEPSVKTIWLGLGRLDDISQTWKLSDQIISPIEPP
>AP019314.1|BBH38177.1|722430_723360_-|NAD+-dependent-glycerol-3-phosphate-dehydrogenase
MLENAKKITVIGGGIWGQTLANLARLNHLAVRVWSRHTGEDLGAIIADTEVIISAVSIKGVVPTIEKLQQLQLNSRIIIVTATKGLEPITTRTPFHLWNQAFPANPLVVLSGPNLAKEINQGLPAATVVASYLQKAAILLQKLLSGESFRVYLNSDPLGTELGGTLKNVMAIASGVCDGLQLGTNAKSALLTRALPEIVRVGTCLGGCQETFFGLSGLGDLLATCNSPLSRNYQVGYQLALGLSLPEILAKLEGTAEGINTTEVLMRIAQEKNLYVPITCQVDRLLRGEISPQVAVYELMRRDLKAEFD
>AP019314.1|BBH38178.1|723637_724069_+|mutator-MutT-protein
MTNYRNPAPTVDIIIELIDSPHRPIVLIERKNPPFGWAIPGGFVDYGESVETAAIREAYEEISLQVQLIEQFHVYSDPNRDPRQHTISIVFIATAKGQPIAADDAKKVGIFHLWEFPQPLCFDHDRILNDYRRYRDYKIRPTH
>AP019314.1|BBH38179.1|724129_725347_-|probable-ABC-transporter-permease-protein
MLITESLKMAVSTLGANKVRSGLTMLGIIIGNASVVAMIGIGQGAQTLANDQFANLGPNTIFVVPGSRQARNTTVNLPKTLVLADAQAIAEQVPTVAEVAPEINARFLISHRNRNMTALVTGSTPEYASVRNFTLEKGRFINNIDLARNKRVTVIGTEVAAQLFPTQNPLGQQLRIKNLSFEVIGILEAKGSFFGNNQDEMLIIPLSTMNSQLVGKTGPYGVELSWISLTARSGEEIRAAKFQIQNLLRLRHKIVAEDDFRVETAKQMIEIFATITQGLTLLLALIAGISLIVGGIGVMNIMLVSVSERTGEIGLRKAIGAREQDILLQFLIESTLVSIAGGALGILVGAGAIVLVSSFSPLAATVSATAVALSLSVSTGIGLFFGVFPAYRASKLEPIVALRSV
>AP019314.1|BBH38180.1|725544_726966_-|ABC-transporter-membrane-fusion-protein
MASGFLAVGVVSYRLLQTPPPGLELAKMTVPAQRETLAVEIKASGRVEPIQSVNISPKNPGRLVRLLVDQGMIVKKGQTLAVMDNLEVYARGMQSEAHLREALANLEQAKRSIPEDIRQLQARFYQAQASYKQLEARLAQAKERIPKDLDQLQAQVQAAQSRFRLAENRVKRNENLVREGAIAQDQFDAVLNEYLNAKANLDESIRRLEQADKTASPEVAGIEQEMIGAAAAIAEAKFALEQRQKTQETELARLESSVAAARADLEQIKIQYRDTVITAPFDGIVTQKYATEGSFVTPTTSASSTASATSTSIIALASGLEVIAKVPEVDVGLLQRGQPVRIVADAFPEEVFEGRVILVAPEAIIEDNVTSFEVRIGLVTGRDKLKSKMNVDVTFVGQQLDNALVVPTVAIVTREGKSGVLVPDAENKPSFQPVSIGLVLDDKTQILSGLEAGEKVFIDLPEGAEDTSKTNQK
>AP019314.1|BBH38181.1|727145_728027_+|tetratricopeptide-repeat-protein
MPKLQLIISLLVFFVAGSPPAFSQALLPYAIEPELEQMEQAGIEMAEDAIQLARFRRTDAALGRAKLAVQLAPHLYQTWFILGSLYLQDDQVQLGIEALNQSLSLAPADAHANIKFSLGSAYFQNQDYQSAIAQIEAGLQMKPDISPALFDLGNSYLKLEQYPAAIAAYEKAVSQDKNFWPAINNIGLVKYEKGDKEAALKDWRAALKIDPKQPEPQLAVAVAIYSQGKTEEGIKLAQAALTSDSRYVSLEFLEENLWGQRLLQDTEKMFNHPKMKDFIARLPQPTPEAEEEN
>AP019314.1|BBH38182.1|728315_728555_+|virulence-associated-protein-VapB-like-protein
MQNLRQVSLLTSGQEQVLTIPPELALSSTEVLLRKEGHRLIIEPISSGSLISLLTTLPDITDNFPDIDEGLLPLDDITF
>AP019314.1|BBH38183.1|728564_728993_+|virulence-associated-protein-VapC-like-protein
MTYQYLLDTNILSHLIRYPQGQVFQHIVDVGEESVCTSIIVACELRFGVVKSGSSRLVQQLERILEFLTVLPLESTVDKHYALIRKHLEQAGTPIGPNDLLIAAHSLALDLTLVTANTREFERVPALKLENWLIDSVIIFGG
>AP019314.1|BBH38184.1|728997_729264_-|hypothetical-protein
MLSINLDRETENYLADIISEENISSEELLKKLIYEHWQSLKPRKTLSQRRGGHPQHLLENAPPDLSLRENRKKVVAEYIQNHHQQHHL

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Crispr_ID: AP019314_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_8

1060955-1061049

Orphan

Consensus_repeat	Method
CTTATCAAGGGGGGCAGGGGGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_8

>merge|AP019314|8|1060955-1061049|CRISPRCasFinder
CTTATCAAGGGGGGCAGGGGGGATCAAACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCCCTTATCAAGGGGGGCAGGGGGTATC

>AP019314|8|8|1060955-1061049|CRISPRCasFinder
CTTATCAAGGGGGGCAGGGGGGATC	AAACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCC
CTTATCAAGGGGGGCAGGGGGTATC

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH38482.1\|1052661_1053129_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350222
AP019314.1\|BBH38500.1\|1066640_1066820_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH38495.1\|1064625_1065033_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368825
AP019314.1\|BBH38497.1\|1065294_1065603_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38481.1\|1051116_1052271_-\|transposase	unknown	unknown	gnl\|CDD\|376574
AP019314.1\|BBH38484.1\|1053785_1054613_-\|omega-3-acyl-lipid-desaturase	unknown	unknown	gnl\|CDD\|215275
AP019314.1\|BBH38492.1\|1062942_1063128_+\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH38494.1\|1063816_1064608_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226124
AP019314.1\|BBH38496.1\|1065078_1065288_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182039
AP019314.1\|BBH38485.1\|1055121_1056162_+\|DNA-cytosine-methylase	unknown	unknown	gnl\|CDD\|273211
AP019314.1\|BBH38490.1\|1059382_1060753_-\|putative-transposase	unknown	unknown	gnl\|CDD\|373239
AP019314.1\|BBH38489.1\|1058692_1058959_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379241
AP019314.1\|BBH38493.1\|1063194_1063830_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226124
AP019314.1\|BBH38498.1\|1065842_1066082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377095
AP019314.1\|BBH38486.1\|1056154_1056385_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38491.1\|1061361_1062696_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366375
AP019314.1\|BBH38483.1\|1053129_1053393_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38499.1\|1066075_1066570_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225269
AP019314.1\|BBH38488.1\|1057790_1058147_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH38487.1\|1056750_1057794_+\|transposase	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH38482.1\|1052661_1053129_-\|hypothetical-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.66496e-39
AP019314.1\|BBH38481.1\|1051116_1052271_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	9.29671e-73
AP019314.1\|BBH38484.1\|1053785_1054613_-\|omega-3-acyl-lipid-desaturase	gnl\|CDD\|215275	PLN02498, PLN02498, omega-3 fatty acid desaturase.	4.93631e-117
AP019314.1\|BBH38494.1\|1063816_1064608_+\|hypothetical-protein	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	1.45652e-26
AP019314.1\|BBH38496.1\|1065078_1065288_+\|hypothetical-protein	gnl\|CDD\|182039	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.	0.00805576
AP019314.1\|BBH38485.1\|1055121_1056162_+\|DNA-cytosine-methylase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	6.62963e-80
AP019314.1\|BBH38490.1\|1059382_1060753_-\|putative-transposase	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	3.90115e-20
AP019314.1\|BBH38489.1\|1058692_1058959_-\|hypothetical-protein	gnl\|CDD\|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	0.00369383
AP019314.1\|BBH38493.1\|1063194_1063830_+\|hypothetical-protein	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	3.2739e-26
AP019314.1\|BBH38498.1\|1065842_1066082_+\|hypothetical-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	0.00960177
AP019314.1\|BBH38491.1\|1061361_1062696_-\|hypothetical-protein	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	0.00112038
AP019314.1\|BBH38499.1\|1066075_1066570_+\|hypothetical-protein	gnl\|CDD\|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	8.11955e-15
AP019314.1\|BBH38495.1\|1064625_1065033_+\|hypothetical-protein	gnl\|CDD\|368825	pfam06282, DUF1036, Protein of unknown function (DUF1036). This family consists of several hypothetical bacterial proteins of unknown function.	2.565e-21
AP019314.1\|BBH38487.1\|1056750_1057794_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.23226e-22

>AP019314.1|BBH38490.1|1059382_1060753_-|putative-transposase
MEKWAAQELQYADLGDTRRKKRLISIVENLASQPSTSVPQASGNLAAASATYDFWNSPYFHPSDIIAAQAKSTVERIKEHPIVLAVQDTTSLDFTTQKAKKGMGYLDYKKSFGLKVHTTLGVSAQGIPLGLINQYVWAREEKNLGIAKQRKKRETEEKESQRWLDSLSETQQQIPEDIQVVTIGDCEADIFDLFAQSRSPNSHLLIRGTHNRKVNYLEDKQRSGHPEPKYLHQSIREVKACGSLDVQVKRNPNHEARLAKLTVRFASFEIQVPSHHSKANPRQPVKLQVILAEEEKPHPGVNPISWLLLTSLDISSFESAITCVRWYSYRWLIERYHFVLKSGCGLEKLQLETGRRIEMALATYSIVAWRLLWLTYQARLHGEESCESFLEEHEWQSLCATIHKKSPPPEKPPSFREAVRMIASLGGFLGRKGDGEPGVKTIWLGLRRLHDKLNGA
>AP019314.1|BBH38489.1|1058692_1058959_-|hypothetical-protein
MTDRDTPFVEDLVEAGFPVVVNILHKGPITNPSGGHIIMLIDQKAEDWIAHDPWGTLTSQYKEHKGEYSRISKQEFNARWQGGYRILA
>AP019314.1|BBH38488.1|1057790_1058147_-|hypothetical-protein
MSGIKLEDIREITKNPQEKGYLIIFNDNRVIILYKKRTIAALLTLIRYGEGCESDLTNATNNLQEIKTTLKGKIPENLIQDSYADANKPFSELWNEEGFNFIYAPPGQKRLGSQKYIL
>AP019314.1|BBH38487.1|1056750_1057794_+|transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHQKICQLAGISPNTLLTYLRDYEEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPVTINEAVYRIEELTGIKRSPTQVRKFLKSMGMKCLKVGSLPSKADRDEQEDYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGLMIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH38486.1|1056154_1056385_-|hypothetical-protein
MRLVWDHRILVEKGGNSADDNFQALCFYCNKCKWQICNLCNYAPDKCSECVLAFPEVTKIIFPTQENIEDRLNRAN
>AP019314.1|BBH38485.1|1055121_1056162_+|DNA-cytosine-methylase
MNELPIRPANKNFTHSRLTFADFYAGIGGFRLGLEQIGWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIPSLLPDFEVFCGGFPCQPFSRAGQQKGWQDSRGLAIQEIIRICHEKKPKVIFLENVSNIVRLNQGQILKDILIQLKEINYLAFYAVIDSKYFQIPQSRPRFFLLAFRKDLGIKNFQFPQHCHAEVGIEKIIVPGDYSIPISGKWQQYIDYYAGRINAEQLSFQMPKTRISIERASVNVDYDNCIYQMRSSGIRAISIQKPFPTFAVSVSGGGAMIPVYSKERRHLSLLEIKRLMGFPDDYYFPVSRTAAIKQLSNAVCPPVIKHIGINITKSLN
>AP019314.1|BBH38484.1|1053785_1054613_-|omega-3-acyl-lipid-desaturase
MQGTMFWALFVVGHDCGHGSFSRYRWLNNLIGHLSHTPILVPFHGWRISHRTHHANTGNIDTDESWYPVTETQYNNMAWYEKLARFQLILFVYPLYLFRRSPNKQGSHFMPESPLFRPSERWQVLTSTFCCTFMLGLLIGVGISQGFWFLFNYYIMPYIVFVVWLDLVTFLHHTEDDIPWYRGQDWYFLKGALSTIDRDYGIFNPIHHQIGTHVAHHIFITIPHYHLQEATEAIRPVLGDYYRVSKEPIFKSLWRSYRNCHFVSDQGSKIFYRKN
>AP019314.1|BBH38483.1|1053129_1053393_-|hypothetical-protein
MTQAILTQILNQLETLELKELQLLNQTIQQHLMDKEEAEKQAVFHQSLLDAGLVKQIKRPSSQPITERRLIEIEGKPISETIIEERR
>AP019314.1|BBH38482.1|1052661_1053129_-|hypothetical-protein
MALYFLDSSALVKRYISETGSAWVLGLFAAALNNEIFIAAIAKVEIVAAITRRSRTGSISVTDATAIVHQLRKDSLKDYQVIEITESIINSGMVLAETYGLRGYDAIQLAVGCAVNTLCLASGLPSITFVSADNELNVAVISEGLLMENPNNHPS
>AP019314.1|BBH38481.1|1051116_1052271_-|transposase
MWINFDQLLDLPNVTVVNYQKIAQTIFLKLALLNETIECPNCHQTLDRINQTEYNLVRDLSILGNPVYLEVPRRQFHCQKCQKYISERLSFMRLRQHHTIRYESMIYERVKNCSIEEISREEGLGWEEVELIFNHCAKELEKEEWEAPERISLDEFSNLKGHKDFITTVVDMDKKILLDVIKGHKQEELMEALKARPVAVREKVKEVSVDMWSGFTAVIKELFPNAKIIYDRFHVMAIINDELNNLRKLMGVHEKGLPHLLWKNKEDLKDEQKQQLEVILKEHPCLGIAWEMKEEIRQIYQSSKTFRGAERKLEKWIRIGGILYESSASMIQKHLQGICNYFENHTTNGLIEGMNTKIKLIKRMSYGFTNFEHLRLKLFACFNS
>AP019314.1|BBH38491.1|1061361_1062696_-|hypothetical-protein
MNITEVLQLIDERLIERDKKPLNTIQKAIFEGSWQGQSYQEIGNEYHRSESHIREEGAKLWKLLSDAFGEEIRKSNFRSTIERMKIKSSQIVEINQNFNFCSQIFNQLNKDDKNREINSQYSQTYHDLTLAPQIIDFYDRENELATISNWVFKQNTRLIAVLGLGGIGKTTLVKRFIDLNLEQFEVVIWKSLKFPKSLDLWLNDLLNTCQKEPKESTDNKIQQLLEVLSNHKCLIVLDDFQNLFAVGQMAGNYQPEYSSYQHFLKLIAEIQHQSHFILISQEKSAEMNYLNQENSPIQCLELSGFEAIDFLENKGLQDEERWLELIQLYEGNPFYLTDIAVLIKDVFDGKVNDFLAENSLVITKKMQSHLKQIFGRCSPLAQQIALELSKVEQPLSREELKNNLDLSASDLINGLQSLQQRYLIQREQNRFQLSSIFKAYIKSD
>AP019314.1|BBH38492.1|1062942_1063128_+|unknown-protein
MTKFVLDKYALDSKKSEAKAKIVGSLGSNASISGDQIEVPSYDASKVVQILSQVGIKYSGG
>AP019314.1|BBH38493.1|1063194_1063830_+|hypothetical-protein
MIQSSLPTLASFGQTGTGKTSLSNTLFGLNWCTDYAVACTQVVTRHEGKILSEINKGEDWTWQLCDTPGVGESEYADEEHFAQVYETFHSADVILWVIQADTRAFAEDQKALLKLTENGKNRPQAHYVIALNQIDRVYPENWDFVKNCPSSEQSSFIPEKINIVYERFSPYIPIRKTNIVPCSVLLSYGLENLVNVINEFEPKGVSCNEFI
>AP019314.1|BBH38494.1|1063816_1064608_+|hypothetical-protein
MSLFNKKVSSEQQKIVDNLRKVLGDKDFNLLEGLIEEELKNPPKVAVIGKTGVGKSTTINALFDLDEKVSHTTHGTTEASKKIVELPKGGKLAIIDMPGMGEDLELDQEYAKIYEKILPEADVVLYVIQANLKALREDQVILRDIVQNVMGNLKGRLVIGLNQVDKIGPGTWNTKFNYPSPEQEDNINRRCQAIQKELSSVLSIKVEQVEYYSAEKRYRLYDLLAAIIKASGNTGWKFAINPADPVELADESVQDLLRRELEG
>AP019314.1|BBH38495.1|1064625_1065033_+|hypothetical-protein
MFQFTNKTNQNIYLAFAYFDRSENMFMSEGWWRIAPNLTIAPYVKPLVDRYYYYYAYLEDRTGEWSGDTKLNVSHVAFKLREPAYCSKSYDTRQFKIRDTGDARKFLIELTDNSSSSISEDEKQLLRMITEFKNK
>AP019314.1|BBH38496.1|1065078_1065288_+|hypothetical-protein
MDWNDLTDEEKEILRRYRQLPDSKKKAVLISKEAFIEWGKTALSWIWDNFGTQIITAIFEGLRQLIFGR
>AP019314.1|BBH38497.1|1065294_1065603_+|hypothetical-protein
MTLPPEVKQRILNVFDDSYDLLPSERDTISKAIDNLDWEESYFLSSLATVFLKREEWLRSLGINIYAIKKKSLPWYVVPSTDSYVSEDEKELLKLMQRFMNK
>AP019314.1|BBH38498.1|1065842_1066082_+|hypothetical-protein
MNTSITFQEIAAEIQLFDNIEQKEQFIFVVGALVSRIISLHKAAEIMEMDTEMFLKILELMGIDFSYLTTEDIDREKKW
>AP019314.1|BBH38499.1|1066075_1066570_+|hypothetical-protein
MVISMKIVFNSSPLIFLSQLGFLEKFLDSNDNFYLPATVQQEINAKQDQSSETLNKLINQQKLIILNIKLISLANSLNERLGKGESDAITLGIELQTDYIILDDFAARKEALRLGLNVKGTLAIIRKLLKEGKIEIKNLEIFYQRLREINFRVKREIFESIFGD
>AP019314.1|BBH38500.1|1066640_1066820_-|unknown-protein
MKPTTIKKSFDCLAFKQTSQEKMAEYMKNLSYSDQIEYLQKKINESDLKLWWESINNKK

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Crispr_ID: AP019314_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_10

1979352-1979454

TypeV

Consensus_repeat	Method
AACTTGCTTCCAATTCGTGAAGCGTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_10

>merge|AP019314|10|1979352-1979454|CRISPRCasFinder
AACTTGCTTCCAATTCGTGAAGCGTCTGAATGGAAACCCGGGCTACCAAACGTCAGTGACTAAATCGATCCCCAAACTTGCTTCCAATTCGTGAAGCGTCTGA

>AP019314|10|10|1979352-1979454|CRISPRCasFinder
AACTTGCTTCCAATTCGTGAAGCGTCTGA	ATGGAAACCCGGGCTACCAAACGTCAGTGACTAAATCGATCCCCA
AACTTGCTTCCAATTCGTGAAGCGTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39327.1\|1987263_1989570_-\|heat-shock-protein-DnaJ-like	unknown	unknown	gnl\|CDD\|372576
AP019314.1\|BBH39312.1\|1970475_1971909_+\|phosphoglucomutase/phosphomannomutase	unknown	unknown	gnl\|CDD\|100093
AP019314.1\|BBH39328.1\|1991138_1992173_+\|pyruvate-dehydrogenase-E1-component,-alpha-subunit	unknown	unknown	gnl\|CDD\|177069
AP019314.1\|BBH39324.1\|1985041_1985506_+\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|376590
AP019314.1\|BBH39325.1\|1985624_1986173_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371328
AP019314.1\|BBH39322.1\|1982713_1983850_-\|FO-synthase-subunit-2	unknown	unknown	gnl\|CDD\|236000
AP019314.1\|BBH39310.1\|1968546_1969380_-\|photosystem-II-manganese-stabilizing-polypeptide	unknown	unknown	gnl\|CDD\|366770
AP019314.1\|BBH39309.1\|1968204_1968417_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39318.1\|1977921_1978974_+\|phosphoribosyl-formylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
AP019314.1\|BBH39319.1\|1979509_1979884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224278
AP019314.1\|BBH39315.1\|1974869_1976057_+\|putative-aminotransferase	unknown	unknown	gnl\|CDD\|180317
AP019314.1\|BBH39316.1\|1976154_1976886_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
AP019314.1\|BBH39321.1\|1981397_1981697_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39320.1\|1980209_1981292_-\|photosystem-II-D1-protein	unknown	unknown	gnl\|CDD\|130221
AP019314.1\|BBH39311.1\|1969887_1970232_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39313.1\|1971961_1973317_-\|glycolate-oxidase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|223325
AP019314.1\|BBH39323.1\|1983987_1984689_-\|Psb29-Photosystem-II-sub-stoichiometric-subunit	unknown	unknown	gnl\|CDD\|237324
AP019314.1\|BBH39317.1\|1977220_1977445_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39326.1\|1986405_1986723_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39314.1\|1973326_1974613_-\|glycolate-oxidase-subunit-GlcE	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39327.1\|1987263_1989570_-\|heat-shock-protein-DnaJ-like	gnl\|CDD\|372576	pfam13355, DUF4101, Protein of unknown function (DUF4101). This is a family of uncharacterized proteins, and is sometimes found in combination with pfam00226.	2.11151e-37
AP019314.1\|BBH39312.1\|1970475_1971909_+\|phosphoglucomutase/phosphomannomutase	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	0
AP019314.1\|BBH39328.1\|1991138_1992173_+\|pyruvate-dehydrogenase-E1-component,-alpha-subunit	gnl\|CDD\|177069	CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed.	0
AP019314.1\|BBH39325.1\|1985624_1986173_+\|hypothetical-protein	gnl\|CDD\|371328	pfam10989, DUF2808, Protein of unknown function (DUF2808). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.85266e-42
AP019314.1\|BBH39322.1\|1982713_1983850_-\|FO-synthase-subunit-2	gnl\|CDD\|236000	PRK07360, PRK07360, FO synthase subunit 2; Reviewed.	0
AP019314.1\|BBH39310.1\|1968546_1969380_-\|photosystem-II-manganese-stabilizing-polypeptide	gnl\|CDD\|366770	pfam01716, MSP, Manganese-stabilizing protein / photosystem II polypeptide. This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilizing protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.	1.12121e-154
AP019314.1\|BBH39318.1\|1977921_1978974_+\|phosphoribosyl-formylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
AP019314.1\|BBH39323.1\|1983987_1984689_-\|Psb29-Photosystem-II-sub-stoichiometric-subunit	gnl\|CDD\|237324	PRK13266, PRK13266, Thf1-like protein; Reviewed.	4.20873e-122
AP019314.1\|BBH39315.1\|1974869_1976057_+\|putative-aminotransferase	gnl\|CDD\|180317	PRK05942, PRK05942, aspartate aminotransferase; Provisional.	0
AP019314.1\|BBH39319.1\|1979509_1979884_+\|hypothetical-protein	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	9.29094e-05
AP019314.1\|BBH39316.1\|1976154_1976886_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.37426e-103
AP019314.1\|BBH39320.1\|1980209_1981292_-\|photosystem-II-D1-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
AP019314.1\|BBH39313.1\|1971961_1973317_-\|glycolate-oxidase-Fe-S-subunit	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	4.15637e-100
AP019314.1\|BBH39324.1\|1985041_1985506_+\|SsrA-binding-protein	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	1.34418e-92
AP019314.1\|BBH39314.1\|1973326_1974613_-\|glycolate-oxidase-subunit-GlcE	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.66522e-59

>AP019314.1|BBH39318.1|1977921_1978974_+|phosphoribosyl-formylglycinamidine-cyclo-ligase
MRDTIGQLGMDYKEAGVDVEAGRAFVEKIRQNVESTFRPEVIGGLGGFGGYFQLPSGYRQPVLVSGTDGVGTKLKIAHSLNCHDTVGIDLVAMCVNDVLTSGAEPLFFLDYLATGKLEASQLAAVVSGIARACRDSGCTLLGGETAEMPGFYSAGEYDLAGFCVGIVEKSQLLDGSKVQIGDVAIGLASSGVHSNGFSLVRKIIDTQGLNWQDCPEILAGSSLGEVLLTPTRLYVKPVLELLRSGLDIHAMAHITGGGIPENLPRCLGKGHSVQIYRESWPVLPIFHWLAQMGSVNSEAMFNTFNMGIGFVIIVPSDLAQLTINQLQSSGINAYQIGEVIAGKGEIVGLD
>AP019314.1|BBH39317.1|1977220_1977445_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDFLQRDVNERLNKLEIVGLRQKTNREKLQLQSPLGIYFEKPKIAETQIYQGKS
>AP019314.1|BBH39316.1|1976154_1976886_+|DNA-repair-protein-RadC
MTYSLRIADIPVSERPRERLISVGAKNLSNAELLAILLATGQGKGKLSAVGLGQHILNELSKYRREPLDVLRDIQPQELTAIHGIGPAKATTILAAIELGKRAFQRRPTEKMVIDSPDTAAAILGHELMYQSQERFAVILLDVKNQLIALKVITIGTATETLVHPREIFREVVKQSATKLIIAHNHPTGSLAPSQDDILLTEQLLQGATYLAIPLLDHLILGNGNFQSLRQITDLWEKYPQED
>AP019314.1|BBH39315.1|1974869_1976057_+|putative-aminotransferase
MSVDWTNSRAKRLSALPPYVFARLDELKALARKEGLDLIDLGMGNPDGAAPRPVIEAAIQAFETPQFHGYPPFEGTASFREAIAKWYDRCYGVELNPDNEALPLLGSKEGLSHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGATLYPIILKAEQDWLIDIDSIPEDVAKQAKILYFNYPSNPTAAIAPREFFEKIVAWAQQYEIMLVHDLCYAELSFDGYQPTSLLEIPGAKEISVEFHTLSKTYNMAGWRVGFVVGNSDIIQGLRTLKTNLDYGIFSVIQKAAETALQLPDEYVKQVQERYRQRRDFFIKGLAQLGWDIPPSKATMYLWVPCSVGMTSTDFALSVLQKTGVVVTPGNAFGEGGEGYVRVSLIADIPRLGEALQRLEDAGIRYR
>AP019314.1|BBH39314.1|1973326_1974613_-|glycolate-oxidase-subunit-GlcE
MTAIAVQITSILPPDTTVITWQQVPKEEQERLSRAIRGKSPEIIVYPANTTALSSLVRFTNENRLSLLAYGQGSKLDWGGLVESPDILVSTQNLNRIIDHARGDLTITVQAGLKLADLQVFLAPSGQFLPLDPSYADNATIGGIIATADAGTWRQRYGGVRDLILGFSFIRHDGEIAKAGGRVVKNVAGYDMMKLFTGSYGTLGIIDQITLRLYPETANSETLIITGNSENISKLSQVIRQSALTPTVAECLNPGMTQALGLGEKVALLLRFQSIPESISEQSQQVSYLGQQLDCQTNYYRDEEEISLWQRYRKTMDNSGQEGNFFGKIGLLPSNLALVIDQINGLASINISSGVGKVILKSEENLDKIRSLCSANHGYLTVLTAPPSLKEKIEPWGYTGNGITMMKTLKTKFDPHGIFSPERFLNKI
>AP019314.1|BBH39313.1|1971961_1973317_-|glycolate-oxidase-Fe-S-subunit
MQTSEHSVNFQELIDQKNQGFDPKNPPAQELIDSCVHCGFCLSTCPSYRVIGKEMDSPRGRIYLMNAINKGEAVLDETTSQHFDTCLGCLACVSTCPSGVQYDQLIAAVRPQVERNQPRSFKDKIIRFLIFNLFPYPLRLKLFLPFLWLYQTLGLQTLVRKSGILKMLFPRLAAMESILPKITLSSLFKNYADVIPSQTEKRYRVGVVLGCVQRLFFSPVNEATVRVLTANGCEVVIPKTQGCCAALPAHQGQEKQAQSLARQMIDSFAETEVDYIIINAAGCGHTLKEYHHILADDPEYKDKAKEFVAKVRDAQEFLAAVGLTADLSAITETELTLVYQDACHLLHGQKISVQPRQLLQKIPNINLKEPIDAALCCGSAGVYNMLQPDTADELGQQKVRNLLNTGAAVIASPNPGCSLQIKKHLQLQGKDTPVIHPIELLDYAIRGLKIS
>AP019314.1|BBH39312.1|1970475_1971909_+|phosphoglucomutase/phosphomannomutase
MTTVNPIKFGTDGWRGIIAADFTFDRVALLAPLAAQVLADNYGQITGSRTMIVGYDRRFMAEDFAQTAAESLQKAGFDVLLSQSYAPTPAFSWAARAENALGAIVLTASHNPAKYLGLKVKGYFGGSVSPEITQQIEALLSNPPQFNAAAGKLNTFEPWSGYCQGLRQKVNIAAIANAIESGQLKVYSDVMHGAAATGLERLLGVGITELRGNRDPLFGGGSPEPLPRNLREIIDKLAHSANLAPLRVGLVFDGDSDRVAAIDGRGNFLSTQNLIPILIEHLAGKKGMRGEIVKTVSGSDLIPKLASLYGLSVFETPIGYKYIADRMLTTPVLIGGEESGGVGYGTHIPERDALLSALYVLEAVVESGQDLSDLYAQLQDKTGFHSEYDRIDLPLANMEARNQLITALDKEPLREIAGKQVTDCNTMDGYKFRLEDGSWLLIRFSGTEPVLRLYCESSTLDRVDEILAWAKSWAIYI
>AP019314.1|BBH39311.1|1969887_1970232_+|hypothetical-protein
MNSRLPGDNSQLDSQLDSLVTTVTAIAQEQQGDCNGLLMLLRTLENLHRQIREQMFEPSLPNTRKDLYGLLRDIEETGGWPYIERMKLQMLMEKLLASEVGALDSAAKTDDRET
>AP019314.1|BBH39310.1|1968546_1969380_-|photosystem-II-manganese-stabilizing-polypeptide
MRFRALLVAFLALCLGVLTACSDAPSAVLNRNELTYDEILNTGLANKCPQISEFTRGTLPLERGESYVVTDLCLEPQEYFVKGEPVNKREAATFIPGKLLTRDTTSLEQMTASLTVGEDGVLTLKEEDGIDFQPVTVQLPGGERVPLFFTIKGFTGKTEAGFNSINSSTDFEGDFKVPSYRGAGFLDPKGRGVVTGYDNAVALPASADSQDFQRANVKATELGKGTMSLQVTKVDASTGEFAGVFESEQPSDTDLGAKDAEEVKIRGIFYGRLEARA
>AP019314.1|BBH39309.1|1968204_1968417_-|hypothetical-protein
MPKKTNKQTEAKSYNHGEEHPQRPDIGTEPHFKKKKPPVTYRYDSSLSPELNWDENPAREQAEALIRPLA
>AP019314.1|BBH39319.1|1979509_1979884_+|hypothetical-protein
MFKIDTCCTLVPYFEVQEGKIAAFKELGPKFIERTRTEEGCIHYAFSFSGNIAHCREGYVDASAVLAHLQNVGELLDEVLKIAKIIRLEVHAPAAEIEKLREPLASLNPQFFILDEGIRRTSEA
>AP019314.1|BBH39320.1|1980209_1981292_-|photosystem-II-D1-protein
MTTTLQQRESASLWEQFCQWITSTNNRLYIGWFGVIMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLLGVFCYLGRQWELSFRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNFNQSILDSQGRVIGTWADVLNRAGIGMEVMHERNAHNFPLDLASGEQAPVALTAPAING
>AP019314.1|BBH39321.1|1981397_1981697_+|hypothetical-protein
MPLISLADIRGGKTETHVNVASLYASFRKMVTLNSTASKIVTDEQRGTSKMDDAPPLGTLDPEILDYVPSFQRLLVTNNRRSMPRHLKNHWDKGGHIWG
>AP019314.1|BBH39322.1|1982713_1983850_-|FO-synthase-subunit-2
MTNSSITAPVTDILAKARSGANLSAKEAIILLETTDNRLIARIRETADFLRRQQVGDTVTYVINRNINFSNICEQHCSFCAFRRDENEEGAFWLNLEEIIAKAADAVRRGATEICMQGGLNPKAKIKGNSLDYYLEIVKNLKQAFPDLHLHAFSPQEVQFIAREDGLSYEKVIASLQEAGVNSLPGTAAEVLVDEVRRVICPEKIDAATWLEIVGTAHRLGLHTTSTMLCGHIETPSQQVQHLEKIRKQQEIALENNYRAKITEFILLPFVGQSAPKPLRNRVGRDQPILADTLKLTAVARIYLGNSIKNHQPSWVKLGLQGATEALNWGCNDLGGTLMEEHITTMAGAVGGTCLTVEELATAIKSLDRPARQRDTIY
>AP019314.1|BBH39323.1|1983987_1984689_-|Psb29-Photosystem-II-sub-stoichiometric-subunit
MKFGSVDKIRTVSDSKRDFYTRHTRPINSVYRRVVEELLVEMHLLSVNVDFHYDPIYALGVVTSFEKFMEGYRPGEDKPNIFNALCQAVNGNPEVYRRDAENMIAIAKETNIDSLLSQLQNPALGGNNQLSDSLVSVINAPKFKYSRLFAIGLYTILAEAQPDMIKEKEKREQILQKFSEILRLSSEKLQKDLDVYRGNLDKMDQLLKVIEDALEAEKKKRQQKEQEKQTTPQ
>AP019314.1|BBH39324.1|1985041_1985506_+|SsrA-binding-protein
MANQDDKIKIISDNRQARHLYEILETFEAGVQLLGTEVKSVRAGKVNLRDGYVLVRNGEAVLINVHISPYEQSSEYFNHDPRRTRKLLMHKKEISKLIGQVEQKGLTLVPLKMYFKGSWVKISIGLGRGKKLHDKREDLKRRQDQRDMARAMKR
>AP019314.1|BBH39325.1|1985624_1986173_+|hypothetical-protein
MLKVLTKVIKYAKAPALIALSLAVGAGIILPKITLANGNPGLTIFSGVDRKDILDYFLQFGGRPRQMDRYKLYIPPKKLSQGAAAFFISYPDYFNGQFDTNKIEVRTNGKSLPLKEVVWDKDSRIIQIVPQQPIDPTSKVEIVMSNVRNPELGTYYFTCDVIASGNIPVRLYVGTWIVSIEP
>AP019314.1|BBH39326.1|1986405_1986723_-|hypothetical-protein
MTGKSKRGFASMDQAKQREIASKGGKAAHQKGTAHEFTSEEAREAGRKGGEAVSRDRAHMAAIGREGGKNSHKGSRKNSNSEENYPANESIGENSSDFSNSEANS
>AP019314.1|BBH39327.1|1987263_1989570_-|heat-shock-protein-DnaJ-like
MRIPLDYYRILGIPFQVSAEQIDLAHADRGRQLPRQEYSQTAIIARQHLLDEAYQVLSAADRRRDYDAQFFGPNPLLLNPESSAENLDSQGGEAAAASPEYPTPQITIAPADLVGALLILQELGEYELVIRLAETYLDLEPTTRPDMILTLALAYGELSREYWQDKNYEQAASTATKALTWLEQEQMFPQVASEIRHDCDRLRPYRILELLSQEKKPSLARQRGLNLLEEMLAARGGIDGQGDDRSGLGVDNFLRFIQQLRVYLTQAEQEKIWAKEAQRPSAVGNYLLVYALIARGFAQKQPAAIVAACERLQQLQKHQDVSLERSICALLLGQTERASTILEKSQEQEILNYIKEQSGQSADLLPGLCRYGERWLQTEVFCHFSDLVERKASLKEYFAEEEVQNYLEELSGFPDEKVPVEVREKASEPLESEVNVLKTHTPPTHLNPVPGVTPMRESAYSSSHSRPQKPSLARANGERTSTAVPALRATAQEETLTPYTQGNVVVTAAYRQPALNPPRRRPSRPRHQAAGNSGPAALETAKTALVAPKRRRPARRKLRLDRVAILGVGLVGTIAVLALGVKAIVDSQSPLAALQGEQLPISLNTPILEIPSANAEVMEGIPLDKETAKETIQAWLAVKSAAFGSEHQKEQLKEVLTGSALEIWQKRAAALQGNNYWRYDHQVDVRSVTNNAKNPNLATVEAIVNEKAMYFHNGVEAIVNDKAMYFHNGKEIVNRSYNESLNLRYDLVRQGDKWLIEKTQVLKTQVLP
>AP019314.1|BBH39328.1|1991138_1992173_+|pyruvate-dehydrogenase-E1-component,-alpha-subunit
MISERTLPTFNPASIIITKAEGLRLYEDMVLGRMFEDKCAEMYYRGKMFGFVHLYNGQEAISSGIIKALRQGEDYVSSTYRDHVHALSAGVPAQEVMAELFGKATGCSKGRGGSMHMFSAEHKLLGGYAFVAEGIPVATGAAFQSKYRREAMGDASADQVTVCFFGDGASNNGQFFECLNMAALWKLPIIYVVENNKWAIGMAHDRATSQPEIYKKASVFSMVGVEVDGMDVVAVHAAAREAVARARAGEGPTLIEALTYRFRGHSLADPDELRSADEKQFWGERDPITRFAAYLYERDLATREELKEIEQKIQAEIEEAVKFAESSPEPDPSELTRFIFAEDE

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Crispr_ID: AP019314_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_11

2113284-2113425

Orphan

Consensus_repeat	Method
ATAGGTAATCATCTGTAGGGTGGGTTAGGCAAAAATAAGTTATACTCTGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_11

>merge|AP019314|11|2113284-2113425|CRISPRCasFinder
ATAGGTAATCATCTGTAGGGTGGGTTAGGCAAAAATAAGTTATACTCTGACTGAAAATTGAGTATTCGCCGTAACCCACCAGATCAGCACATAGGTAATCATCTGTAGGGTGGGTTAGGCGAAAATAAGTTATACTCTGACT

>AP019314|11|11|2113284-2113425|CRISPRCasFinder
ATAGGTAATCATCTGTAGGGTGGGTTAGGCAAAAATAAGTTATACTCTGACT	GAAAATTGAGTATTCGCCGTAACCCACCAGATCAGCAC
ATAGGTAATCATCTGTAGGGTGGGTTAGGCGAAAATAAGTTATACTCTGACT

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39443.1\|2113752_2114184_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372936
AP019314.1\|BBH39439.1\|2105396_2106794_+\|amidase	unknown	unknown	gnl\|CDD\|223232
AP019314.1\|BBH39445.1\|2115992_2116448_-\|site-specific-recombinase	unknown	unknown	gnl\|CDD\|377856
AP019314.1\|BBH39441.1\|2109389_2110640_-\|S-adenosylmethionine-synthetase	unknown	unknown	gnl\|CDD\|235374
AP019314.1\|BBH39433.1\|2099548_2099851_+\|RNA-binding-region-protein	unknown	unknown	gnl\|CDD\|240845
AP019314.1\|BBH39449.1\|2119468_2121094_+\|60-kDa-chaperonin	unknown	unknown	gnl\|CDD\|234573
AP019314.1\|BBH39435.1\|2100595_2101135_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
AP019314.1\|BBH39448.1\|2119110_2119422_+\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
AP019314.1\|BBH39438.1\|2104718_2105252_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235365
AP019314.1\|BBH39446.1\|2116787_2117111_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
AP019314.1\|BBH39452.1\|2124500_2124779_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39444.1\|2114596_2115760_-\|histidine-kinase-like-sensor-protein	unknown	unknown	gnl\|CDD\|341410
AP019314.1\|BBH39440.1\|2106925_2108800_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
AP019314.1\|BBH39447.1\|2117568_2118186_+\|CP12-polypeptide	unknown	unknown	gnl\|CDD\|341393
AP019314.1\|BBH39434.1\|2099908_2100526_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
AP019314.1\|BBH39450.1\|2121442_2123356_+\|TPR-repeat-precursor	unknown	unknown	gnl\|CDD\|276809
AP019314.1\|BBH39436.1\|2101576_2103193_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|173884
AP019314.1\|BBH39432.1\|2098359_2099193_+\|1,4-dihydroxy-2-naphthoate-synthase	unknown	unknown	gnl\|CDD\|180958
AP019314.1\|BBH39451.1\|2123352_2124279_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
AP019314.1\|BBH39437.1\|2103625_2104393_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197317

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39443.1\|2113752_2114184_+\|hypothetical-protein	gnl\|CDD\|372936	pfam14159, CAAD, CAAD domains of cyanobacterial aminoacyl-tRNA synthetase. This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.	7.65245e-41
AP019314.1\|BBH39439.1\|2105396_2106794_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	5.61711e-128
AP019314.1\|BBH39445.1\|2115992_2116448_-\|site-specific-recombinase	gnl\|CDD\|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	3.17729e-07
AP019314.1\|BBH39441.1\|2109389_2110640_-\|S-adenosylmethionine-synthetase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
AP019314.1\|BBH39433.1\|2099548_2099851_+\|RNA-binding-region-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	6.32484e-31
AP019314.1\|BBH39449.1\|2119468_2121094_+\|60-kDa-chaperonin	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
AP019314.1\|BBH39435.1\|2100595_2101135_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.94027e-26
AP019314.1\|BBH39448.1\|2119110_2119422_+\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.78596e-48
AP019314.1\|BBH39438.1\|2104718_2105252_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	8.5973e-97
AP019314.1\|BBH39446.1\|2116787_2117111_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.54884e-32
AP019314.1\|BBH39444.1\|2114596_2115760_-\|histidine-kinase-like-sensor-protein	gnl\|CDD\|341410	cd17774, CBS_two-component_sensor_histidine_kinase_repeat2, 2 tandem repeats of the CBS domain in the two-component sensor histidine kinase and related-proteins, repeat 2. This cd contains 2 tandem repeats of the CBS domain in the two-component sensor histidine kinase and related-proteins. Two-component regulation is the predominant form of signal recognition and response coupling mechanism used by bacteria to sense and respond to diverse environmental stresses and cues ranging from common environmental stimuli to host signals recognized by pathogens and bacterial cell-cell communication signals. The structures of both sensors and regulators are modular, and numerous variations in domain architecture and composition have evolved to tailor to specific needs in signal perception and signal transduction. The simplest histidine kinase sensors consists of only sensing and kinase domains. The more complex hybrid sensors contain an additional REC domain typical of two-component regulators and in some cases a C-terminal histidine phosphotransferase (HPT) domain. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.94088e-76
AP019314.1\|BBH39440.1\|2106925_2108800_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
AP019314.1\|BBH39447.1\|2117568_2118186_+\|CP12-polypeptide	gnl\|CDD\|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	7.27554e-53
AP019314.1\|BBH39434.1\|2099908_2100526_-\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.19614e-43
AP019314.1\|BBH39450.1\|2121442_2123356_+\|TPR-repeat-precursor	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.87871e-08
AP019314.1\|BBH39436.1\|2101576_2103193_+\|extracellular-solute-binding-protein	gnl\|CDD\|173884	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
AP019314.1\|BBH39432.1\|2098359_2099193_+\|1,4-dihydroxy-2-naphthoate-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
AP019314.1\|BBH39451.1\|2123352_2124279_+\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00321035
AP019314.1\|BBH39437.1\|2103625_2104393_+\|hypothetical-protein	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	1.26068e-91

>AP019314.1|BBH39441.1|2109389_2110640_-|S-adenosylmethionine-synthetase
MSKRYLFTSESVTEGHPDKICDQISDTILDALLSQDDHSRVAAEVVVNTGLVLITGEITSKAQVHFVDLVRKKIAEIGYINADNGFSSNSCTVLVALDEQSPDISQGVTAAQENRELLSNDELDKIGAGDQGIVFGFACNETPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIYEDGRPVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPVFSDLEIKPDANTRYLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLADKCEIQVGYAIGVARPVSLFVETFGTGKVADDVILDLINKYFELRPAGIIQTFNLRGLPSERGERFYQDVAAYGHFGRNDLDLPWEQTDKAAILKEALTSAVV
>AP019314.1|BBH39440.1|2106925_2108800_-|ABC-transporter-ATP-binding-protein
MDNKVLDVRHLTVEFSNQKRTTVAVNNISFSLQKGQVLGCVGESGSGKSVTSLALMGLVPSPGKITGGEICFRPAKGQSMQAVDLLSIPPEELRYYRGGEMAMIFQEPMSSLNPVYNIEFQLTEAILLHQKVTTEQAKNQAISLLQEVRLLPSDEQLEEKYIETFPLENKGHVREKIRTYIQEQKEAILKRYPHELSGGQLQRVMIAMAISCNPTLLIADEPTTALDVTVQAEILRLLRDLCKSDREMSMVFISHDLGVINEIADQIVVMYQGEIVEQGTKEEVLNYPQHPYTKGLLACRPRLNSRPEKLPTVSDFLRVEKDSQGKIIELQEITPPAVKFITLQEEESRIEGLQHHENILSVENLSVRFPVKGVFGQVKTFFNAVDQISFAVKRGETLGLVGESGCGKSTLARTILRLIPATSGDIYFRGENLAKLNPSDPKLRLLRRELQIVFQNPYNSLNPRLSIGKAILEPMVIHHTGGNYKKQRQRVEYLLERVKLDPNWFDRYPHQLSGGQRQRVCIARALALNPQFIICDESVSALDVSVQAGVLNLLKELQQEFNLTYIFISHDLSVVRFMSDRIMVMNKGKIEEMGTANEIINSPQSDYTRKLIASIPQFTQSLAS
>AP019314.1|BBH39439.1|2105396_2106794_+|amidase
MSDELLQKSALELAQLIRTKQISPLELTHLYLDRIEKFDCQIGSFVHVARESALATAGAQTEQLSQIAATAELPPFFGVPTAIKDLNAVAGMPVSYGIAALQGNIAQYDEGIVTRIKMAGFILLGKTATSQLASFPYTENPGFLPTRNPFNRDYTAGGSSGGAAAAVAAGFCPIAQGSDGGGSIRTPAGCCGLVGIKPSRGRVSYAPVGEFQSGIATNGTLSKTVADGAALLTVISGYTTGDPYWLPDPPFSFLEATQRGVKPLRIAFSTSISPFGEAAAVYKNAVIETAKILEGMGHHLTEYSPDLQALIAPFRRIWQAGTAAAAIPRELLSPLNQWLLDNSGSAGEYLQAVRQMHVISRQIVAMFDNFDVLLLPIFLHQPPGIAEWENLPPEEAVNKMISWIAPSPIANASGLPAIALPTGVDSQGLPVAIQLVGKPADEITLLGLSAQLEAANPFGLMANFK
>AP019314.1|BBH39438.1|2104718_2105252_-|uracil-phosphoribosyltransferase
MTPQLIEILSADEIRRTITRLASEVIEKSGDLNNLILIGIYTRGVPLANLIASQIESLEGVKVPVGAIDITFYRDDLDRIKTRTPAKTKMPLDVTGKTVILVDDVIYKGRTIRAAFNAIIEYGRPQKIRLLVLVDRGHRELPIHPDFTGKKLPTAAEEQVKVYLQEIDGKDGVELIK
>AP019314.1|BBH39437.1|2103625_2104393_+|hypothetical-protein
MSFNIRYDKPDPDEGNWRVRREAVAALIAHYSPDIIGTQEARANQLLDLHRLLPKYQSLGSDRRGTGLDEHCAILYQPSRLKCLEIYEFWLSETPDVIGSITEAWGNPYPRMVTGAKFRTLEGQTLQFYNTHLDYYSDQAKDLGAKCIQERFCQLDLTKDYLFLTGDFNVNSQQLPRQILTQPLQPEIKLKDALADLELAEQMSFNNYTDTPYLAIDTIYYDSRLQLDWAKVDPSRWLNLIPSDHYPVIAAFTLP
>AP019314.1|BBH39436.1|2101576_2103193_+|extracellular-solute-binding-protein
MRPLRQLYRYLSLFCLCLLLTVGCQSTNSNLPQRDSDRLIIGTTLKPRSIDPADSYELAGLFIIYNLGETLYTYAEGTTNLKPLLATELPQISPDGLTYTIPVRRGVIFHDGTVFNAEAMKFSLERFIKNGGEPSFLLRDTIDKITATKEDEITIKLTRPFAAFPALLAYPGACAVSPKFYQIGEGKFKPEEFIGTGHYRLKAVTSDSFSLEAFDRYWGEPAKNKGVNVQIYLSNPANLFNGFQTGAVDIAYQSLLPPQVRKLRTEAAQEKWQAIESSGAAINFMSLNLKSEPTNNILVRQAIASLVDRDLLNERILQGQGIPLFSLIPTTFSESQPVFKERYGNHNIEQAKQLLKAAGYSQEKPAIVEVWHSSGSITSSSVAAVMKALAKRDLDNRIQFEPNSILGAAFFRNISQGLYTTALSNWYPDFLDADNYIYPFLDCAKGSPETGCEEGGSQSQGSFFYSQEMNQLIAQSRRESNPAKRKQIFGKIQEILADEVPYIPLWQTKEYAFARNGITGVIINPSQTFPFWTIAKKS
>AP019314.1|BBH39435.1|2100595_2101135_+|pentapeptide-repeat-containing-protein
MTFPSIDLLAIRQGEIKDLAGMNLAGADLAGADLAGANLRANLRGADLTGANLRGADFRNADLRGAILLDAIVTGASLAGAFLAGAVFNHLDLSGADFRGVDGRGVSFVGAILTQADFTSANLSGADLSATDLEEAIFFGAILRGTNFTDANLLCASLASAATTGAIFDRACLEGTGLT
>AP019314.1|BBH39434.1|2099908_2100526_-|hypothetical-protein
MSLELLSLENIEEIAHQYGYWAVFIGITLENTGIPIPGETITIVGGFLAGSGDLNYWLVLVSAITGAVLGDNFGYWLGRAGGWPFLLKVGKFFRIPPQKLELAKEQFSKNAPRAVFFGRFVALLRIFAGPMAGIARMPYGRFFLCNLGGATVWATIMVTLSFFLGRLFPLHQLVSSMARFGILALIIVLAWTIIHPILESRKTAV
>AP019314.1|BBH39433.1|2099548_2099851_+|RNA-binding-region-protein
MTIYVGNLVYDVTTDDLKEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARPKEDNFGGGGRGERKNFGRRER
>AP019314.1|BBH39432.1|2098359_2099193_+|1,4-dihydroxy-2-naphthoate-synthase
MTVEWQSVKTYEDILYHKWGGIAKITINRPHKRNAFRPKTVFELYDAFCDAREDARIGVVLLTGAGPHSDGKYAFCSGGDQTVRGQAGYIGDDGVPRLNVLDLQKLIRSIPKVVIALVAGYAVGGGHVLHLVCDLTLAADNAIFGQTGPKVGSFDGGFGSSYLARVVGQKKAREIWFLCRQYNAQQALEMGLVNHVVPVEELEQEGIKWSLEILEKSPLAIRCLKSAFNADCDGQAGLQELAGNATLLYYMTAEGAEGKQAFLEKRPPDFSQYPWLP
>AP019314.1|BBH39443.1|2113752_2114184_+|hypothetical-protein
MESMQPTETQNPIRTDLPGSLSKPSSSSTEQIWSEYVEPVWDSVMSYLANVPDYIGSFFSGYKKPLIVLGAILASFVTVKVTLAVLDAIDDIPLLAPILQLVGIVYTGWFVWRYLLKDENRRELLAEIDALKAQVFGSHNNPL
>AP019314.1|BBH39444.1|2114596_2115760_-|histidine-kinase-like-sensor-protein
MSLDTPLSWAPDLEKAINRQPLTVPPTTSLADAIALIGQAHSRLCLLTDDLSPLAAPAGEVRVSCLLVVQGQELLGILTERDVVRLTAQGINLSETTVADVMVHPLITLPQQSAQDIFAALFLFRRYRIRHLPIVDDQGQLIGVISHESIRQILRPANLLRFRRVSDVMTSQVVQAPLTATVLQLAQLMAEHRVSCVVITQRDSEDNDCPVGIVTERDLVQFQAVQIDLHKTRAQTVMSTPLFLLSPEDSLWTAHQEMQKRRVGRLVVSWNWGRGLGIVTQTSLLRVFDPMEMYGVIENLQQTIQQLESERSPSLPSPPADLLPQRTRTPSEKDIAGDRELLLTLLDNAYKDVKYMLANLDIVVEQRRSLLQSVLEKLAHLGREISS
>AP019314.1|BBH39445.1|2115992_2116448_-|site-specific-recombinase
MVLQVIALTSPMTATPSNDLSAWERLEQGRQAKASNGGYAGYGSPAFGQRSIDGELVDDPEECRVIELIRRHHKSGKSLQKIADWLNEQGYTTKRGQPWQRISVKRVLDRLYGKVSRISGVTPQTEHNSEVLTPASGDAAPKTIRGSITPK
>AP019314.1|BBH39446.1|2116787_2117111_+|thioredoxin
MGTATFIQDETEFDSLLKSESLLVVDCTATWCGPCKLVAPLIDRLADDYRDRAKVFKLDLDSNKPVAKRFGIRSIPAVMVFKQGKLIETLVGVKPYEEFTAAVERQL
>AP019314.1|BBH39447.1|2117568_2118186_+|CP12-polypeptide
MLQAQEIMTQNVVTIRGSATVADAVKLMKEKQLRGLIVEPRHEQDPYGIVTETDIVYKVAAFGHDPKTMRVYEIMVKPCVVVNPELGVEYVARLFAQTRIRRAPVIQGKTLLGIISVSDILFKSDFVEKPKRLFIEDEIEAAREDARAICAAKGEISPDCAAAWDVVEELQAEASHQRAKKQGNNSLQSYCEANPDALECRIYED
>AP019314.1|BBH39448.1|2119110_2119422_+|10-kDa-chaperonin
MAAVSINVTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDILAAVS
>AP019314.1|BBH39449.1|2119468_2121094_+|60-kDa-chaperonin
MAKSIIYNEDARRALEKGMDLLAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGITIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKKGIDKAADFLVSQIAKHAKPVEDSKAIAQVGAISAGNDDEVGQMIASAMDKVGKEGVISLEEGKSMTTELEITEGMRFDKGYISPYFVTDTERMECVFEDPAILITDKKIGLVQDLVPILEQVARQGKPLVIIAEDIEKEALATLVVNRLRGVLNVTAVKAPGFGDRRKAMLEDIAVLTGGQVISEDAGLKLETTKIDSLGTARRITMNKDTTTIVAEGNDVAVKTRCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLETWAKETLHHEELTGALIVSRAIAAPLKRIAENAGQNGAVIAERVKEKPFNVGYNAATGEFSDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKSAPPAGGGDFDY
>AP019314.1|BBH39450.1|2121442_2123356_+|TPR-repeat-precursor
MSKKAKGFGQSPTPTRKFKDFLFAFGDFYRKNSRDETKLQQFLKANINKLDDLLLDALPLVFTSLIADKSIDERERIASLFENFAVTIYKFPLGDRATNLELSITAHNLSLKIYTREDSPEDWAGTLNNLAVACKNRILGDRAENLERAIKLYEQALEVRTRKNFPVDWAGTLNNLALAYSDRIRGDRADNLEKAIELYEQALEIYTRKNFPVDLARILNNLAIAYSDRIRGDRAENLEKAIELYGQALEVRTRKNFPVDWAMTLNNLASAYINRILGDRAENLEKAIELYGQALEIKTRKNFPVDWAGTLNNLASAYSNRILGDRAENLEKAIKLYEQALEVYTRENFPENWAMSQQNLANAYCERVLGERKDNLERAIDLYNQAAQIFTRAALPVRWAKNKGDLAEALMQRDNPGDLDTAIALLQEALEVSPAGCQDFIDFQYRLGIALSQRYDRDKNFDDLRQALVAYKTALDLISPEHYDRKDIWKALPTTQTILGSRLVRDGEWQQGLQLLLNSVNQLSTSDDRLAHANALYHTGRAYEVLSDREKARLYYRDALRWYEYLQYLPGIAKSRAGLGNVFVSQGHLEKGMEELDRAKAIYQQLPQTDPDKVEEIDIIYQASRRAIERQTSEVYI
>AP019314.1|BBH39451.1|2123352_2124279_+|hypothetical-protein
MTSADDLFKQSSDNIQRLGLKEIPFTESPIDLNSDTLDRVFTGRQNELRRVFNLFQSRERRRILVSGRLGIGKSAFLLEVLSVMRRNRPQMLTTYISLPAGLDIATTALIALARAMPNDDWAQRQLYQMGIPTAKVLKERGAEVGANAILTGKLTEKDLPPTKFQYPTVSFDTLLERAQKIYPQGILIAIDDLDKQNPSVVRQMMHDAQGMLKGRAWFMLTAHPIGMTGDLLTSERGLFDLHLPLEELDADTTYQMLINYWDLDKKQIEKSLNSNPHLGFTSRSPKSLKPRYIKENHKSRLTLCPVMV
>AP019314.1|BBH39452.1|2124500_2124779_+|hypothetical-protein
MEVLEKGLKAAEQDFRQQAALNAKEERIRLLLQRKGNISDDSITIDELESLGFRAFSDILPFLERLEEADLAQRLNQEDVTVFEPILLPPAD

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Crispr_ID: AP019314_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_12

2157244-2157336

Orphan

Consensus_repeat	Method
ATGAATTAACCCTACGATGAATTAACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_12

>merge|AP019314|12|2157244-2157336|CRISPRCasFinder
ATGAATTAACCCTACGATGAATTAACCCTACCATCGCGGTTAATTCATGAATTAACCCTACGATGAATTAACCCTACGATGAATTAACCCTAC

>AP019314|12|12|2157244-2157336|CRISPRCasFinder
ATGAATTAACCCTACGATGAATTAACCCTAC	CATCGCGGTTAATTCATGAATTAACCCTACG
ATGAATTAACCCTACGATGAATTAACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39480.1\|2151443_2152277_-\|Uma1-protein	unknown	unknown	gnl\|CDD\|224326
AP019314.1\|BBH39484.1\|2155370_2155817_+\|protein-of-unknown-function-DUF29	unknown	unknown	gnl\|CDD\|366774
AP019314.1\|BBH39493.1\|2161330_2162389_-\|magnesium-protoporphyrin-IX-monomethylester-aerobic-cyclization-protein-homolog	unknown	unknown	gnl\|CDD\|237458
AP019314.1\|BBH39489.1\|2158901_2159222_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372702
AP019314.1\|BBH39481.1\|2152388_2153624_-\|aminotransferase	unknown	unknown	gnl\|CDD\|181053
AP019314.1\|BBH39487.1\|2157449_2157956_-\|pilin-polypeptide-PilA	unknown	unknown	gnl\|CDD\|374761
AP019314.1\|BBH39490.1\|2159306_2159693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372702
AP019314.1\|BBH39478.1\|2149422_2150490_-\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|187568
AP019314.1\|BBH39485.1\|2155920_2156376_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
AP019314.1\|BBH39483.1\|2154199_2155141_-\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|215029
AP019314.1\|BBH39486.1\|2156384_2157173_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39495.1\|2164936_2165119_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|214377
AP019314.1\|BBH39488.1\|2158229_2158775_-\|pilin-polypeptide-PilA	unknown	unknown	gnl\|CDD\|227303
AP019314.1\|BBH39482.1\|2153777_2153990_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371332
AP019314.1\|BBH39477.1\|2147822_2149244_-\|glycosyl-transferase-family-39	unknown	unknown	gnl\|CDD\|224839
AP019314.1\|BBH39496.1\|2165300_2165900_+\|molybdopterin-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
AP019314.1\|BBH39491.1\|2159778_2160210_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372702
AP019314.1\|BBH39492.1\|2160435_2161260_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH39494.1\|2162596_2164561_-\|M48B-family-peptidase	unknown	unknown	gnl\|CDD\|320697
AP019314.1\|BBH39479.1\|2150560_2151340_-\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237353

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39480.1\|2151443_2152277_-\|Uma1-protein	gnl\|CDD\|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	2.2556e-58
AP019314.1\|BBH39484.1\|2155370_2155817_+\|protein-of-unknown-function-DUF29	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	4.63059e-52
AP019314.1\|BBH39493.1\|2161330_2162389_-\|magnesium-protoporphyrin-IX-monomethylester-aerobic-cyclization-protein-homolog	gnl\|CDD\|237458	PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional.	0
AP019314.1\|BBH39489.1\|2158901_2159222_-\|hypothetical-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	7.0855e-09
AP019314.1\|BBH39481.1\|2152388_2153624_-\|aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
AP019314.1\|BBH39487.1\|2157449_2157956_-\|pilin-polypeptide-PilA	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	1.68771e-14
AP019314.1\|BBH39491.1\|2159778_2160210_-\|hypothetical-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	2.06162e-08
AP019314.1\|BBH39478.1\|2149422_2150490_-\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|187568	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs. CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.14001e-162
AP019314.1\|BBH39485.1\|2155920_2156376_+\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	3.14261e-53
AP019314.1\|BBH39483.1\|2154199_2155141_-\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|215029	PLN00016, PLN00016, RNA-binding protein; Provisional.	2.71806e-150
AP019314.1\|BBH39490.1\|2159306_2159693_-\|hypothetical-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	7.12361e-08
AP019314.1\|BBH39495.1\|2164936_2165119_+\|50S-ribosomal-protein-L32	gnl\|CDD\|214377	CHL00152, rpl32, ribosomal protein L32; Validated.	4.4983e-15
AP019314.1\|BBH39488.1\|2158229_2158775_-\|pilin-polypeptide-PilA	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	7.41102e-15
AP019314.1\|BBH39482.1\|2153777_2153990_+\|hypothetical-protein	gnl\|CDD\|371332	pfam10999, DUF2839, Protein of unknown function (DUF2839). This bacterial family of unknown function appear to be restricted to Cyanobacteria.	3.29987e-35
AP019314.1\|BBH39477.1\|2147822_2149244_-\|glycosyl-transferase-family-39	gnl\|CDD\|224839	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].	2.46303e-06
AP019314.1\|BBH39496.1\|2165300_2165900_+\|molybdopterin-binding-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.22736e-99
AP019314.1\|BBH39494.1\|2162596_2164561_-\|M48B-family-peptidase	gnl\|CDD\|320697	cd07338, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	1.19774e-47
AP019314.1\|BBH39479.1\|2150560_2151340_-\|type-III-pantothenate-kinase	gnl\|CDD\|237353	PRK13331, PRK13331, pantothenate kinase; Reviewed.	2.56282e-135

>AP019314.1|BBH39486.1|2156384_2157173_-|hypothetical-protein
MVGAKKSLNLSLLKTLGLVAVIGGLIMAIVEMQQEKVKTLTKEKLLDRNYRQESRLENAQVQLLKNIPAFGFDNMLANWSMLQFIQYYGDGDARRETGYGLSPDFMEIVTKNDPKFVRAYLMMSVASSLNAGKPERTIEIMNKGLSKLTPDVTDAYFIWLYKGVDELLFLGDIPAAKKSYQMAADWAKIAGNEFIEKSARGTVKFLETNPDSRASRVGAWMLVWINSQDEETRRLAKENIEKLGGKLIVVNDNQVMAIPPKD
>AP019314.1|BBH39485.1|2155920_2156376_+|hypothetical-protein
MTLAKVKNLYDQDFALWIEKTVKQLKSGDLSQVDLENLIEEVESLGKSQRKAVDNFLTRLLEHLLKRCYVVLPDCYRGWEIEIRNFRKELKKEFKYSPSLKRFMIEILEECYREALEAMKEDYPDSNFPDVCPFAEDIDGLLNHKFWQDEK
>AP019314.1|BBH39484.1|2155370_2155817_+|protein-of-unknown-function-DUF29
MTLAKVKNLYDQDFALWIEKTVKQLKSGDLSQVDLENLIEEVESLGRRDKRELKNRLITLFEHGLKRRYLPFSDCYRGWEVTIKRCQSKLKDILKDSPSLCSFLTDICDDCYQEAVENMRIKYNAIFPDISPFSKDIDSLLNHRFWES
>AP019314.1|BBH39483.1|2154199_2155141_-|NAD-dependent-epimerase/dehydratase
MKILIMGGTRFIGVSLTKVLVEQGHEVVLFNRGNKPAPVAGVRQIHGDRTDPAQLKEKLKNESFEAIFDNNGRELSDTQPLVQIFRERIGHFVYVSSAGVYLKSDQMPHKEGDKLDPKSRHKGKHETENYLSEMGLPWTSIRPVYIYGPGNYNDLEAWFFDRLVRNRPIPIPGHGEHFTQFGHVVDLAKAMAAVLGNSQAIGQVYNISGDRYVTFNGLAKACAAAMGKNAEEIEIVNYNPKKFDFGKKKPFPLRVQHFYADINKATRELNWQPEYDLVSGLADSFQNDYLPSGRDRQEIDWAIDDQILANQQN
>AP019314.1|BBH39482.1|2153777_2153990_+|hypothetical-protein
MGESKRRQSALGDKYGQEENILPWLPITKSQASQAYKLTTRGAWIGIGVLAGVWLVIRFVGPAFGWWNVQ
>AP019314.1|BBH39481.1|2152388_2153624_-|aminotransferase
MATINSNYLKLKAGYLFPEIARRVQAFAAANPDANIIRLGIGDVTEPLPLACREAMIKAVEEMGDRSSFKGYGPEQGYAWLREKIAVHDFQARGCEISADEIFISDGSKCDTGNILDIFGDNNSIAVTDPVYPVYVDTNVMAGHTGEANDRGEYEGLIYLPITAENNFTAQIPAEKVDLIYLCFPNNPTGATATKEHLTAWVNYARANGSIIFFDAAYEAFITDASLPHSIYEIEGARQCAIEFRSFSKNAGFTGTRCALTVVPQSLTAKAADGSDVQLWKLWNRRQSTKFNGVSYIVQRGAEAVYSPEGEAQVQELVKFYLQNATIIREKLTAAGLEVHGGVNAPYVWVKTPQGLSSWDFFDKLLHTCNVVGTPGSGFGAAGEGYFRLSAFNSRANVEAAMERIISKFPG
>AP019314.1|BBH39480.1|2151443_2152277_-|Uma1-protein
MRPFWLESLQVERLTIAIAGLPAHLQGIKLVQWSDLHCDEQHLPVAVLQEAIAITNQEKPDLIFLTGDFITDSPRPIFTLVDSIKALESQGGIYACLGNHDSYPPHARETVRAALTSVGIRVLWNEIATPYGENFPIVGLADYWSGEFLPQILEQIAPDIPRLVLSHNPDTAMVLRDWRVDLQLSGHTHGGQVTIPGIGSLPIVLEKLRRSLPEPYCQWVPFHRQFSRVVRYWQWSEGFHRVGENQLYVNRGLGTYFPGRLFCPPEVTVITLINRTQ
>AP019314.1|BBH39479.1|2150560_2151340_-|type-III-pantothenate-kinase
MTEQDTDWIGLMIGNSRLHWGYFCGQTLLACLDTPHLREPLSNEFLQQIFPKLLTNKCNCALIVASVVPNQRELWANYGNLRRITLKDIPLLDLYPTFGIDRALAVLGAGKKYGFPCLVIDAGTALTFTGVDGDKKLVGGAIVPGLKVQLASLRERTAALPEVSLPERLPQMWAKETAEGIRSGIIYTILAGIEKFSLEWLNLYPESGIILTGGDGDLIRDYWQEKAIKSLLVDKTIIFEGIAAVKGISSCLIDKGEHI
>AP019314.1|BBH39478.1|2149422_2150490_-|NAD-dependent-epimerase/dehydratase
MAIVLVTGSAGLIGSESVRFFCDRGYTVVGIDNNMRQVFFGEDASTEWNRAKLSQDYGDKYIHHAVDIRDHEAIADIFKTYSHDISLIIHTAAQPSHDWAAKDPYMDFSVNANGTLVLLENTRQHCPQAVFIFCSTNKVYGDRPNELPLVEKELRWEISENHPYFAHGIDELMSIDACKHSLFGASKVAADVLVQEYGRYFEMKTASFRGGCLTGPSHSGTQLHGFLSYLMKCTMIGKEYSIYGYKGKQVRDNIHSYDLVNAFYHFYQTPRVAEVYNIGGSRFSNCSMLEAIQECEAIADKKLNWQYVETNRIGDHIWWISDVSKFKNHYPDWQLTYTVTDILKEIFSQNVSRWL
>AP019314.1|BBH39477.1|2147822_2149244_-|glycosyl-transferase-family-39
MIDVHAFRQTQTAISVFYLLKGSPWLAYETPVLGVPWSIPMEFPLYQGIVAILVKLFQTPIDQTGRFVSAFFFYLSLIPIYVILSYLQVARAFRWLFLSLFLASPLYLFWARTFMIESTALFFSLAYLACIAVYFRYKSPIIALLACLFGIAASLTKVTTMAGFLILACVWIGINWVKKDSSRNLAKDLLIPVVVFIIIPFLLAKIWVNFADAQKLLNPMAADLITSKALRDWNFGTIAQKLSRSEWRNYLTRTLNDVFGGLIISVMALVILPIFTSKKLLSYGLSLLFILTVAIFTNLHFVHNYYPYANAIFLLGASGFTIMGLIEKKRKIWQSVGWFFLALILLSQLQFYRAFWYPTKLHGNSYLEIASQVQTVTSPEGVLLIYGDYWSSLIPYYSQRRALMFYNRASEEKFKNALYKLSRANHQVEAIVFCRKTRENREDKKYLDSLYNPNEKPVFSNKRCDIYTTRHGK
>AP019314.1|BBH39487.1|2157449_2157956_-|pilin-polypeptide-PilA
MKYLLFLAIKSQGKKARGFTLIELLIVVILLGVLAAISLPSLFGQVAKGRQAEARAALGLINRAQQGYRYEKGTFATLSELSLEAASISLTFYNISEVGTRDAFGAAYRANAVTEFDDDIKNYAGAAGQTAAGAYTGIVCEDETPLEDNVSTSNSAGVLACVDGIEIN
>AP019314.1|BBH39488.1|2158229_2158775_-|pilin-polypeptide-PilA
MNSTFKFKLIQALNKKNGNKGFTLIELLVVVIIIGVLAAIALPNLLGQVAKGRQAEARTTLGAINRAQQANRLERGTFGTFSSDAAANQLPVQFTLSYYTQPSTVGTPTVTGAEVHMAPVSTYNNDILEYGAAVGQTNVGDFSAVVCEQTTAPSVSVTAGDLANPGDGTTAASCTAGRRIQ
>AP019314.1|BBH39489.1|2158901_2159222_-|hypothetical-protein
MSNETVTYSLESVLTRIESKIDSLEKRMNDRFDKVDERFDKVEDRLTKLEIGQADLKGDIKVLDEKIEGLTVRVGYQEFTNRGILIALVVAVLGGAAKLFGFFPNP
>AP019314.1|BBH39490.1|2159306_2159693_-|hypothetical-protein
MSNETVTYSLEAVLTRIESKIDSLEKRMDERFDKVDERFDKVDDRLTKLEIGQAELKAELKGDIKVLDEKIEGLKGELKGDIKVLDEKIEGLTVRVGYQEFTNRGILIALVVAVLGGAAKLFGFFPNP
>AP019314.1|BBH39491.1|2159778_2160210_-|hypothetical-protein
MSNETVTYSLESVLKEIKDSIKEVNQKIDTLQKDVNQKIDTLQKDVNQKIDTLQKDVNQKIDSLETRMDERFDKVEDRLTKVEIGQAELKGELKGDIKVLDEKIEGLTVRVGYQEFTNRGILIALVVAVLGGAAKLFGFFPNP
>AP019314.1|BBH39492.1|2160435_2161260_-|unknown-protein
MESFSRRIFERLAGFAETDSDREVYLNALGSGNPVEKEQDRYECLLHQLKQGDYSAALKAYLQLLAIADEGIQQQLVEIVRERVYSSATDELLRTELLAYFKPPRILDFEDVRVLLASCPDWFTSKNLARARAVQELVAQRCDEELFRTLMIEALRELNHQTRSFNAAYALLEALKKPVCALAVVRLMPSLQDQTTLQEVFKRILAAERQGIDPWEKLPIALVEQQCPLTSALVGELLAVGAEGEIGSLITMLLASAAEPTIVVHLVQEACQED
>AP019314.1|BBH39493.1|2161330_2162389_-|magnesium-protoporphyrin-IX-monomethylester-aerobic-cyclization-protein-homolog
MVTTVEPPSQKKAVLRETILTPRFYTTDFEAAANFDLSLQETEIKAMLEEMRTDYNRHHFERQQEFENYQDNLDEKTRNAFIDYLERSCISEFSGFLLFKELSRQLKSRNPLLGEIFHLMARDEARHAGFLNKAMADFNISLDLAKITKTRTYTFFPLEWVLYTVYLSEKIGYWRYILIYRYLEEHPQYKFNPLFNYFESWCQDENRHGDIFKTLLRAKPQLWNNWRSRLWSRFFLLSVFATHSLTVRERSDFYDALGMDAIAFDQEVIRQTNNTSARAFPTILNVDHPQFFPRLNRCAERNLQLKAIDESSVPQWLKTMGKLPLQLGMVGDLLRLYLIKPIDAEATREMVL
>AP019314.1|BBH39494.1|2162596_2164561_-|M48B-family-peptidase
MSLEEGLKYLRLKDYARAVELLEEYCQQSANFHSPLYIQAKMALVRAYRSNNQRQQAIALALELENHLDQEVSQWAKRLLTIFSAEQKTIGIVTNGVKFRALPKAARAARVSVRLSRTIPENRLIFAKLLTITAFYAIVCGLFFVITRLLLIPAGTGVIIALLLSGFLGGLILFIAPNLIDWTQKRLYRVHWVSLAEIKRYSPESAAVIGRICREKGLKPPKLGIIEDGQPLAFTYGSRRGNARLVVSRGLFSYLDDEELATVYAHELGHIWQGDFALMTICASFDHLSCYLDSFAQNQGNNFKDTVFLALLSSIITIFRPIIVFCCLYLSRTREYFADHFAAQVTGNPNALARALVKIAFGLVQETAQFSPLLLSTKVLNIALEQDAIIAGNVYGIALESRRIGQSFLWDIYNPWAKWLELQSNHPLTGERIRALTNYARQMDLDIEFSLGEVLRQKMELNPKKLYQNFCLRLCLYYASGLGFIIGVVIAGFLWLKFSSWGALGLILVGGGLGIIINRLASYPRLNNAGFSDIFSLTDNPYSHPLPAIPVRLRGELIAQGKNFFLKDSTGIIPLAPNYRFGFWHKIRTTNSPMAAINNTSVRVLGWFRRDLSPRLEWSQITHSGGNIRFYPRFWSLVSGFGLLVSGLIIAVTF
>AP019314.1|BBH39495.1|2164936_2165119_+|50S-ribosomal-protein-L32
MACPKKKTSNAKRDQRRAHWRKQAAREAQKALSLGKSVLSGRSNSFVYPTKEEEEGEDEE
>AP019314.1|BBH39496.1|2165300_2165900_+|molybdopterin-binding-oxidoreductase
MLGKFFKKPESPDQDRVPPGQYLASGFPVLTYGDTPQIKTEEWLFKVWGKVATTKTFNWSDFMALPQWEFTKDFHCVTRWSKLDVTWTGIKVSDFITLIDLLPEATHVMQHCYGGYTTNLTLEEFLHEDNFFAFQLFGQPLPPDHGGPLRLVVPHLYAWKSSKWINGLEFLDREQSGFWERNGYHRRGDPWLEERYSGF

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Crispr_ID: AP019314_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_13

2288947-2289054

Orphan

Consensus_repeat	Method
GGGTGTTAGGGTGTTGGGGTGTTAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of AP019314_13

>merge|AP019314|13|2288947-2289054|CRISPRCasFinder
GGGAATTGGGGAGATGGGGTGTTAGGGTTTTAGGGTGTTAGGGTGTTGGGGTGTTAGGGTGGTCACTGCGTGCGCGTTGCGGGGGGTGTTAGGGTGTTGGGGTTTTAG

>AP019314|13|13|2288947-2289054|CRISPRCasFinder
GGGAATTGGGGAGATGGGGTGTTAG	GGTTTTAGGGTGTTA
GGGTGTTGGGGTGTTAGGGTGGTCA	CTGCGTGCGCGTTGCGGG
GGGTGTTAGGGTGTTGGGGTTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39613.1\|2291593_2292574_-\|hemolysin-type-calcium-binding-region-protein	unknown	unknown	gnl\|CDD\|380205
AP019314.1\|BBH39612.1\|2289131_2291384_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
AP019314.1\|BBH39611.1\|2288403_2288928_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|214364
AP019314.1\|BBH39620.1\|2300976_2302326_+\|putative-branched-chain-amino-acid-transport-system-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380492
AP019314.1\|BBH39617.1\|2296080_2297445_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370155
AP019314.1\|BBH39615.1\|2293575_2294670_-\|delta-6-acyl-lipid-desaturase	unknown	unknown	gnl\|CDD\|239583
AP019314.1\|BBH39618.1\|2297477_2300138_+\|putative-branched-chain-amino-acid-transport-system-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380492
AP019314.1\|BBH39603.1\|2277548_2278280_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131644
AP019314.1\|BBH39608.1\|2284578_2285322_+\|heat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
AP019314.1\|BBH39616.1\|2295023_2296064_+\|unknown-protein	unknown	unknown	gnl\|CDD\|224112
AP019314.1\|BBH39610.1\|2286330_2286945_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237871
AP019314.1\|BBH39606.1\|2281033_2281249_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
AP019314.1\|BBH39621.1\|2302480_2303191_+\|two-component-response-regulator-OmpR-subfamily	unknown	unknown	gnl\|CDD\|223816
AP019314.1\|BBH39604.1\|2279713_2280529_-\|transposase	unknown	unknown	gnl\|CDD\|227708
AP019314.1\|BBH39607.1\|2281892_2284121_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
AP019314.1\|BBH39614.1\|2292710_2293244_-\|CDP-diacylglycerol-glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
AP019314.1\|BBH39609.1\|2285305_2285923_+\|3-octaprenyl-4-hydroxybenzoate-carboxy-lyase	unknown	unknown	gnl\|CDD\|180312
AP019314.1\|BBH39605.1\|2280798_2280993_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|177033
AP019314.1\|BBH39619.1\|2300245_2300965_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
AP019314.1\|BBH39602.1\|2276438_2277482_+\|transposase	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39613.1\|2291593_2292574_-\|hemolysin-type-calcium-binding-region-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	3.57945e-17
AP019314.1\|BBH39612.1\|2289131_2291384_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0
AP019314.1\|BBH39611.1\|2288403_2288928_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|214364	CHL00100, ilvH, acetohydroxyacid synthase small subunit.	1.0708e-99
AP019314.1\|BBH39620.1\|2300976_2302326_+\|putative-branched-chain-amino-acid-transport-system-substrate-binding-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	2.74929e-84
AP019314.1\|BBH39617.1\|2296080_2297445_+\|hypothetical-protein	gnl\|CDD\|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	3.28145e-42
AP019314.1\|BBH39615.1\|2293575_2294670_-\|delta-6-acyl-lipid-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	3.79044e-51
AP019314.1\|BBH39618.1\|2297477_2300138_+\|putative-branched-chain-amino-acid-transport-system-substrate-binding-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	4.36291e-54
AP019314.1\|BBH39603.1\|2277548_2278280_-\|hypothetical-protein	gnl\|CDD\|131644	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms. [Cell envelope, Surface structures].	0.000142857
AP019314.1\|BBH39608.1\|2284578_2285322_+\|heat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	3.66802e-23
AP019314.1\|BBH39616.1\|2295023_2296064_+\|unknown-protein	gnl\|CDD\|224112	COG1191, FliA, DNA-directed RNA polymerase specialized sigma subunit [Transcription].	1.35135e-06
AP019314.1\|BBH39610.1\|2286330_2286945_+\|hypothetical-protein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	0.00695696
AP019314.1\|BBH39606.1\|2281033_2281249_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.87588e-32
AP019314.1\|BBH39621.1\|2302480_2303191_+\|two-component-response-regulator-OmpR-subfamily	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.45261e-84
AP019314.1\|BBH39604.1\|2279713_2280529_-\|transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	2.4686e-16
AP019314.1\|BBH39607.1\|2281892_2284121_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.39287e-39
AP019314.1\|BBH39614.1\|2292710_2293244_-\|CDP-diacylglycerol-glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.45028e-47
AP019314.1\|BBH39609.1\|2285305_2285923_+\|3-octaprenyl-4-hydroxybenzoate-carboxy-lyase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	3.03703e-129
AP019314.1\|BBH39605.1\|2280798_2280993_+\|50S-ribosomal-protein-L33	gnl\|CDD\|177033	CHL00104, rpl33, ribosomal protein L33.	2.51159e-28
AP019314.1\|BBH39619.1\|2300245_2300965_+\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	4.93879e-13
AP019314.1\|BBH39602.1\|2276438_2277482_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.31516e-22

>AP019314.1|BBH39611.1|2288403_2288928_+|acetolactate-synthase-small-subunit
MKHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQMGVSRITMVVPGDEDSIEQLTKQLYKLINVLKVQDITQTPCVERELMLIKVNATAERRAEVIELAQVFRARIVDISEETLTIEVVGDPGKMVAIMQMLNKFGVREVARTGKIALIRESGVNTEYLKALEAKMSI
>AP019314.1|BBH39610.1|2286330_2286945_+|hypothetical-protein
MGWIMVLFAIAVGGLLIWQNLGAITLVFFGGIMTVKLPLAVWVLLFTLAGIISGLTLQFLYSFGRPLAAPKASPPIANNPQVPPPSPRPTYIQDRAASPPGNDWERDSGDDWNFDAPPEKPTTIQDREEFPPRVADGEKANFVKPPEDSYQTGSVYSYSYRTAKQTRGEKAEQVYDVNYRIITPPAQDENEEREVNKGDEEDWI
>AP019314.1|BBH39609.1|2285305_2285923_+|3-octaprenyl-4-hydroxybenzoate-carboxy-lyase
MKELSKPLILGVTGASGLIYAVRTLKYLLLADYTIDLVASKSAYTVWQAEDNVRMPPEPELQEQFWRGQCGVMEGGKLRCHRWGDVGATIASGSYRTLGMVIIPCSMSTVAKLAGGLSSDLLERAADVQIKEGRKLVLVPRETPFSLIHLRNLTTLAEAGVRIVPAIPAWYHHPQSIEDLVDFVIARTLDQLDIDCVAINRWQGH
>AP019314.1|BBH39608.1|2284578_2285322_+|heat-domain-containing-protein
MYDNEILDSNNSLNNPLDGSDPDLAAEIPPDPEEMLSLLTSDHLSERMIAARAFCELRDERAIAPLLEMLSDVCPLVRVSVAYALGRNPSLSAVEPLIELLARDWNGYVRKGVVWALGNCGERRAIEPLVHALKTDISAVRLWAASSLAQIAKVNYEDIITVLPPLIEGLRRDLIAAVRSNCAWSIGQLCRELPLNVIYATAIDALIEALVEDEDLGVKEDARGALLKVGDPRGLQLIEELELEGII
>AP019314.1|BBH39607.1|2281892_2284121_+|two-component-sensor-histidine-kinase
MEKQPSAIDTELDGQLQEEDSEQFLRSIFNSVQASIFVVDVLENRDFRYVGANPVHERWTGLRSSDIKGKTPEQILPPDDARSVRQHYSDCVRYGTTISYEQYLPFQNIPYWWLTTLTPLRDNNARIYRLVGTSTNITERKQAEEALRLQAEREQLLGVMQERIRQSLDLDRILQRTVKEVRQFLNCDRVLIYRLFPDHSGMIVVESHTARINSVLGNRIQDPCFNLSPERLENYRRGRIQVIENVHNSGLDPCYRSLLTSLQVQANLVVPIICDNQLWGLLIAQNCQKTRSWQSQEIDLLKQLAIQVGIAIQQAELHQRVKCLNTALESEVQQRTAELQMSLKYEALIGRITEKIRDSLDENHILQTTTRELVQVLPVERAQIELYDPSRSQATIVHEYTTQKLICQGITRQISDFPEIYQPLLHKQILQFVDHLPLGNPQIGRVNRCACAIFDDQGFLGNLWLIRPANQIFNSLETNLIQHIATECAIAIRQARLYESSQAQVRELEKLERLKSEFLKTLSHELRTPITSIRLAVETLESLLEDQGIEIDPQDSIGQLLQILNIESQRQSKLVNDLLTLTYLDAETEPPAIEAIDLLSWLPLLVEPFRHLTRERQQQLILDIDGDIPEINTSLCHIERIIAELLTNASKYTPERGIIRVNVRRADEQILISVSNSGVEIAPEELSRIFAPFYRIPSQDPWLYSGTGLGLALVCKLIKPLNATIDVTSANAVTTFTLTLPI
>AP019314.1|BBH39606.1|2281033_2281249_+|30S-ribosomal-protein-S18
MSYYRKRLSPISPSQPIDYKDTELLRKFITERGKILPRRITGLTSKQQRDLTEAVKRARLMALLPFVNQEA
>AP019314.1|BBH39605.1|2280798_2280993_+|50S-ribosomal-protein-L33
MASKKGVRLIITVECTECRSNPDKRTPGVSRYTTSKNRRNTTGRLEIKKYCPHCNKHTVHKEIK
>AP019314.1|BBH39604.1|2279713_2280529_-|transposase
MLPETISNYGGIEQRWLLVESQARQESDLKKLEKKIEQEKNSAQEKIRQLSRREFENRAVALAIAKGLSDSLKSHQLTEIKVNLIPPESQGSKLKSKDDLPSQSYQVQAELELNLAAIERLKKRAGRFVLATNDLEKKRLSSEDILKKYKGQQAPERGFSFLKDPCFFADSVFLKSPHRIEVMAMLMGLCLLVYTIGQRQLRLSLKQQETGLKNPLGKLTDRPTLRWIFQCFQGIHLLRIQDNQKISNLTDERRNILRFFPKPCQEYYLLS
>AP019314.1|BBH39603.1|2277548_2278280_-|hypothetical-protein
MHNSVMLTTNKLTKILSGVATLGIATAIAAPAQAATFTVPLDAMGRGMVDTELVDIAGPGYGLSIGGMVYDSVTLGDKVFSDFSVVADVAAGDDLSFILVGGVWTVQYNPAGMGRDQGQLHYQVAITDPTMYFDSVSFDTDISGMGGTYKATKEIKTLAGASLLTLESLNGSEDMGSLAPYMVQSIKVIDTYGVISDGGMSLLQSSTNDFTCCGLIRVPEPGTILGLLAVGGLGMVSRFKKQK
>AP019314.1|BBH39602.1|2276438_2277482_+|transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHKKICQLAGISPNTLLTYLRDYEEGGIEKLKEINFYRPKSELESQRETLKKYFEKNPPATINEAVYRREKLTGIKRSPTQVRKFLKSLGMKCLKIGSLPSKADPDEQEEYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGLMIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH39612.1|2289131_2291384_+|penicillin-binding-protein
MSNQSPKTQISQLVTVAVQKLQGKVNFQAVNLKKGARVPELRLKNENGSGESKYPLIGDRYLLGRSSSSCDITIRNTVVSQIHCSLQRDPKNPHNFLLTDENSTNGVYMGKRRLKSVSLRHGDSFTLAPPDLANCVTISYYCPPPLWARLLRYGFYGAGGIFGLLVLAVIWESRKVNVYPLPSGVSGPVVVYPRDGQTPLNPIRQETHRELDNLGDFSPYLPKAVVASEDSRFYWHFGVDPLGIVRAVMINWQGRGIRQGASTLTQQLARSLFPEVGRQNTADRKLREAVVALQLEAVYSKDTILKTYLNRVYLGLAGYGFEDAARFYFDKSARDLDISEAATLVAMLPAPNRFNPIQDYDTSVQLRNRVIDRMAQLGMISPEAAASARRSRIEISPQAKKSLSSTIAPYFYSYVFEELQDLLGEEVAKEGNFIVETSLDRRLQAIAEKSLKNNVLKQGPRYRYSQGALVTLNSQTGEILALVGGVDYQKSQFNRAIQAKRQPGSTFKVFAYAAALEQGISPYKTYTCAGLSWQGQAYSPCERSSGAINMFQGLAQSENSVALRIAREAGLSNVVNIAERLGIKSPLNPVPGLILGQSEVNVLEMTGAYGVFDHGGRWNRPHAIKRILDASDCKNVEDLSTCRVIYDYGEDNERNQQVISPKTAETMNSLLRGVITNGTGGAASIGMGEAGKTGTTDNYVDLWFIGYLPRRDWVTGIWLGNDNNSPTSGSSQQAARLWGDYHRQLITTQN
>AP019314.1|BBH39613.1|2291593_2292574_-|hemolysin-type-calcium-binding-region-protein
MPTVTISFASLPGPTGASFNPTVTTSVAAFLNAHPTVPISISTTGLTADNLTSLGLLSTGGDTVWRIANAGVADSATLSRVGGGFSKILSLPANSLTFVRGGSAGTYQLTGGIVNTKASGPQVVSSIAPLLLSDSYFITGSAFNDTLTGGNSTDTLIGGDGNDIISGGEGADTLIGGNGNDTLDGGNGFDSLIGGDGNDRITGIGGADTLIGGLGSDTLTGGNGNDRFVYNNPNEGGDLIADFNIASGNTDAIVVSNGGFGGGLTTVGGTLAPSLFGATAGGAVRFVYSGGVLQFDTDAGLGVSLVTIATLNLSPALTAARIVVDV
>AP019314.1|BBH39614.1|2292710_2293244_-|CDP-diacylglycerol-glycerol-3-phosphate-3-phosphatidyltransferase
MNLPNSITLSRLLGLPLILYWLHQGTEIDRWLSLIIFLIAASTDWLDGYLARKLNQITELGKFLDPLVDKLLVLAPLLALIEMDLIAAWGVFLILARELAIAGWRINPNLTGNSDIKGANWWGKSKTVSQIIAIALLIAPLPSEYNLISQIAFWLSVTLTLISGVIYTTPSRKLTQN
>AP019314.1|BBH39615.1|2293575_2294670_-|delta-6-acyl-lipid-desaturase
MRVTFTENQGFRKELNKRVDAYFTENGIPTRDNFAMYLKTITILTWVIAAWLFVLFGPDIWWLKIIGCMVLGGGLAGIGFSIGHDANHGGYSSKKWVNSLLGMSYDYIIGTSSYLWRFRHNYLHHTYTNVLGYDVEIHGDGVVRMTPHAEHKWYHRYQHLFIPILYAIIPIYWSFSDVRSILFGHRFGEIKIPNPKPIDLFVLLSGKVVYLFWFIGIPLLVGYSPLEIAIGFLIAFMTYGVLACHVFMLAHVLEPAEFIQPSAANQIEDEWAIFQVRTTVDFAPKNAFLNWYLGGLNYQVVHHLFPQICHIHYPKIAPILAEVCQEFGVNYAVYPTLRGALAYNYRWLRQLGNKQSNFDLKLAS
>AP019314.1|BBH39616.1|2295023_2296064_+|unknown-protein
MADDEAVYFYLWQWLQNDPNNQLVKSHWMVFLQYRSCMVTQRVYKNVGHRIDADYETLFYYLLNLLATAITNNPRNFYGNFQDNKTKPGFFRLILEKWTDKKLRNTLYNFLRGEYKTIGRTNLGIVSLFSANKIQKVLRTSGIFNENHLLIFNCFREVKKASLRSLDKWQEEDWQQVIDRLQQLQPQVILTVEEVQAKLNQIGEIMRNHIDPPYSKFEPNNYDDNSNYFWENIPSKKPSKDLLQQQEIQEDINKLLITLEDEVKQIAYCYYHQKMTQAQIANRLGVHSSTISREITQLCKKIYQLLCAREGKDCPILLNEIQLESRQKQEIDAYLKYFCQSYLTQI
>AP019314.1|BBH39617.1|2296080_2297445_+|hypothetical-protein
MKVNLDILQQINPKSLWLTFSETEIKQARSILGQYSNQTAKNQALINYLVQICLSNWLKDNLDCSLQIIPENHQYLWEFINGFTWQIKDKKVTTIPSQAIDIEGLTIEQEWVDIPDLAADFYLGVQVDLAEKFLNIWGFISRKDVKNLAEYDSIYHQYYLDSEQMIDDLDILWQSCLKGESEQVKLESLANLSPATAEKLIKKLGQVSPYSPRLDISFQQWLALLNNQQWREKIYQQRLEVIPTKLGQWLQGIITEKWQEILSTIDNYRPINPGFLLAAEKVSSRESPADIQREIRQLYASQKEVEFSEHLTPEEALAKLQHQTQDETIRWQAAEYLWNIDPHYPNAAIRKMLDVGSQLMGYKIALMVGVLSTSDQRIAVLIRAYAMDNFAKLPPGLSLQISDEIGQLIPGLEARAREKPLDSYLQLYFLADADDRFNVNLSLGDSSITEQFSI
>AP019314.1|BBH39618.1|2297477_2300138_+|putative-branched-chain-amino-acid-transport-system-substrate-binding-protein
MSRVVILKIGEGNFETGFSVTLEIRDNHRLIAPFAEGRLVPNLDIADALQNYRRAYYHWVKSQPSLGITVPHSMITHAAVDDPRDNLRKATQTLKDSLNEWLNSSYLSSIQNRILFHIGTKSEVRFFIQTNHFDLQQIPWECWNFLRDWWNDVEIALTIQRNPPIINLTPPIKVLVILGNIDIESKHTSLCLSSLQTLLGNQDKVSLHILSPGLKDTLSPKNIHKILSPGLKVPLSPKNIHNELIKNQWDIVVYLGHSQTSSDGHDGVFIIDNDTALSPDNNLRNSLEIAVKKGLKLVICNSCDGLGIGRQLANIGVPHIIVMKEPIAVRVALRFLEVFLPNFLEYKSLQESLTIARQELRLHEFEVDAASSSLLPRLIENPEEPPLILPLPPENTEENHQNNHEQSRPLRLSSRWKQALLFILSILVTLSVLYWGGVFSYDASKDPEISLGEEILLKTNRQDNIIERGRQAFKNKEYKQAIQLFKKSLDRLPNNPEIRIYYNNARAAYQDRNPLKIATSVPLGNNPEIAQEILRGIALLQQELNDEQAKNPDFHFLQVVVANDNNSGVDAKDRAEKFVKDPSIIAVVGHNASAASEAAKDIYVQGKIVALSPTSFSPKISGNGYIYKMVPEMETFATTLSEYIRKQTDKLIIQNPTNLICYDNRSGDNYNFAQKYRNILLGQQFQKVIKDADFDCNIEPKNNLDQEKIYQKIAQYQVNILMIAPYINDLKRAVSIFKQRPAQQLNLVILGSPTFQSYLTLAEGKQGVENLVITVPWYDLKQDNYIHSFWQNKINVWRTPMAYDATKVILTALRQLYQQGQKFDRELLNQVLRNDFSIEGMTGTVRFDENGVRNMNNNPDDRRYLILQVKKGQFVPLAPIKSAGPV
>AP019314.1|BBH39619.1|2300245_2300965_+|PspA/IM30-family-protein
MKLLKKLTPKALIFWLIGDKAGNSLVAIWNWLWGIPIESGGKIAVESAKESLELMQKSLAELTESVAKVVAAQQSAQAQYEAKKQEHTNYLQQAVTAQKKGLQEAARLAMVKVISLEKILPAMKDRVDNAEKVVIAAKEKLRKEQEKIEHYKLEMSNLKAISSMNEALGKINEFDSSLNLNTSRDRFEDANEAINDRYRKENAYSELSENYSEKLAQEIDFLSLDDEINRRLAEFNQQS
>AP019314.1|BBH39620.1|2300976_2302326_+|putative-branched-chain-amino-acid-transport-system-substrate-binding-protein
MTKTGKKAGLPPISYVLLGLIGWFLFPQISAIFAPKADNNPRISYGNHLLIKTNSNTTKESAIAAIAQGDHQEAEQLLQKSLAQRPNDPESVIYLSNLQTGSNPFKIAVVVPATTNPNVAQEILRGVASAQTQINQQGGINGRKLMVIVVNDDNQPQISKEVAGELVKNTDIIAVIGHNASDASLAAAPIYEKGGLVMISPTSLANNLSGAGNYIFRLVASNGKITEKLANYIVNTAKVRKIAFCYDSQAPDNISFKDELMANVAKKGGQIVPIVCDLSVPNFKADQALNQAISGGANGLFVVAHVDRLDPVFEVIRSNRQRLPLFSSPTLYNIRTLEDGGKNAQGLTLAAPWHPSVNQTFANLMQEQWRGPVSWRTATSFDATRVIIAGLRENTQRQGLQSRLRSGNFHQTGATGKISFDPNTGDRIGQPVLIQVRSTPSGEQFVPLP
>AP019314.1|BBH39621.1|2302480_2303191_+|two-component-response-regulator-OmpR-subfamily
MDIVIIEDEIEIAHLIQQTLERESFTCHLAYNGRVGLELFYQKQPELVILDLMLPELDGLELCARIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYMVKPFSPRELTARVRALLRRSLRHDSQPQQLHRSRHFLIDLDQHSALRKLEGMPEETLDLTTLEFNLLATFVSYPNRVWSRTQLIDNLWGNDFFGDERVVDTHIRRLRKKVEPDPANPIFIKTVVGVGYKFEDDII

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Crispr_ID: AP019314_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_15

2323430-2323549

TypeV

Consensus_repeat	Method
GAGTGCGATGCCAAAGGCACTGCGTAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_15

>merge|AP019314|15|2323430-2323549|CRISPRCasFinder
GAGTGCGATGCCAAAGGCACTGCGTAGCAGATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACAGAGTGCGATGCCGAAGGCACTGCGTAGCAG

>AP019314|15|15|2323430-2323549|CRISPRCasFinder
GAGTGCGATGCCAAAGGCACTGCGTAGCAG	ATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACA
GAGTGCGATGCCGAAGGCACTGCGTAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39638.1\|2319077_2319518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131303
AP019314.1\|BBH39656.1\|2330671_2330890_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39637.1\|2318923_2319097_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH39640.1\|2320449_2320989_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39650.1\|2325400_2325976_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274840
AP019314.1\|BBH39654.1\|2329868_2330177_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39636.1\|2318065_2318920_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
AP019314.1\|BBH39639.1\|2319776_2320316_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39653.1\|2328759_2329803_-\|transposase	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH39645.1\|2323015_2323216_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224514
AP019314.1\|BBH39652.1\|2328113_2328341_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39642.1\|2321291_2321720_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379313
AP019314.1\|BBH39641.1\|2321083_2321299_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39651.1\|2327637_2328111_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350254
AP019314.1\|BBH39655.1\|2330286_2330679_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133136
AP019314.1\|BBH39648.1\|2324680_2324872_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39644.1\|2322171_2322552_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39647.1\|2324035_2324494_+\|transposase	unknown	unknown	gnl\|CDD\|379154
AP019314.1\|BBH39643.1\|2321767_2322100_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367760
AP019314.1\|BBH39649.1\|2325008_2325377_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39638.1\|2319077_2319518_-\|hypothetical-protein	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	6.8605e-42
AP019314.1\|BBH39645.1\|2323015_2323216_+\|hypothetical-protein	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	9.26544e-11
AP019314.1\|BBH39642.1\|2321291_2321720_+\|hypothetical-protein	gnl\|CDD\|379313	pfam13650, Asp_protease_2, Aspartyl protease. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix.	0.00421252
AP019314.1\|BBH39649.1\|2325008_2325377_+\|hypothetical-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.90492e-16
AP019314.1\|BBH39651.1\|2327637_2328111_+\|hypothetical-protein	gnl\|CDD\|350254	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_3.	4.25638e-63
AP019314.1\|BBH39655.1\|2330286_2330679_-\|hypothetical-protein	gnl\|CDD\|133136	cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	0.000140229
AP019314.1\|BBH39647.1\|2324035_2324494_+\|transposase	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	1.02469e-05
AP019314.1\|BBH39653.1\|2328759_2329803_-\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.29369e-22
AP019314.1\|BBH39636.1\|2318065_2318920_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.27903e-20
AP019314.1\|BBH39643.1\|2321767_2322100_+\|hypothetical-protein	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	4.76607e-07
AP019314.1\|BBH39650.1\|2325400_2325976_+\|hypothetical-protein	gnl\|CDD\|274840	TIGR03897, Lantibiotic_mersacidin_modifying_enzyme, type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge. [Cellular processes, Toxin production and resistance].	4.18858e-56

>AP019314.1|BBH39645.1|2323015_2323216_+|hypothetical-protein
MMKYKIVLYRSEEGITVGVPALPGCWSEGDTEEEALTNIQDAIREYLAALEERLQDGEIREIEMQV
>AP019314.1|BBH39644.1|2322171_2322552_+|hypothetical-protein
MISKLLSVSILATFLVAVASSTPVQAKPKTYKCESYKTTDGQWRYRISPSLEGSFISRSLCFIPVSQKRCKYDDNLGHGWRECGNCKTSPADPFNFCLGEGYGEIVEAPGGDRYRAFRTGTTIVLD
>AP019314.1|BBH39643.1|2321767_2322100_+|hypothetical-protein
MILRIFRVEIDPSTRSAFEAGFRSLSVDAVTRAPGNLSCEIGMPTRWAPNTYSMITRWRDEDALVAFAGPEWNTPVIPAGMEAFGRKLSVEHYRIDDSPIGEQRNAADSR
>AP019314.1|BBH39642.1|2321291_2321720_+|hypothetical-protein
MPNTERYPFLAGDATLGEASFRPYLPFTLVHQQVSIAASGLLDTGASVNVLPYSIGVELGYNWERQTTALSLTGNLAQYEARVVLAQAVVGQFEPIQLVFAWTQATNVPLILGQVNFFMEFDVCFYRSQLEFAVSPKSAATE
>AP019314.1|BBH39641.1|2321083_2321299_+|hypothetical-protein
MVSSKLISTLRELSRSDKFYIMQFLISELAQQEPELIKPEQAYPVWSPYGADEAADTMLKALQATKAQNHA
>AP019314.1|BBH39640.1|2320449_2320989_+|hypothetical-protein
MKVLSCTAVAVIVFCLPSTASASFSQNQSEIVAQTGNLVPVYRWFHSGDKDWITLRDGEIDDWKLGSWGYRDKTYSFSCSLKSFPNSVAIYRWFHPRDKDWITITENEILTTQMQQWGYQDRTFQCFVSRTPINNGVAVYRWFHPTDKDWITLADGEIPEYQLGRWGYQDKTFQFYAWR
>AP019314.1|BBH39639.1|2319776_2320316_+|hypothetical-protein
MIYFRICTKVNNEKLALSALPSKDKLTSEAVQSEGEDLDAQLWTPVLLPNIGSDACVLLNKLSNTLACVESTGFLSFGLGKKKPSTKLDEYLIFFPKNTGDNAGNIMQGLIEMQLNQYDDCIIGWKNAMNQKALVGAISSGNKVEVLMGIKEFSLEALKAYQEGIPINFSGLWKFERFV
>AP019314.1|BBH39638.1|2319077_2319518_-|hypothetical-protein
MNPPPPRKLLDVVRETIRLKHYSYRTEQTYLDWIKRYLLFHQKKHPREMGGEEIRAFLTHLAVDKNVAAATQNQALNAILFLYREVLKIELGNIGAYLRAKGHKRLPTVLTKKVKMADYFSDRTTDCDRCPGHSQPTKVRIAHRRN
>AP019314.1|BBH39637.1|2318923_2319097_-|unknown-protein
MLIEEIESLEKQLLSLGVESRSYPLNELIAFSSAFMTMKAIASNLNQMSQDLPAYTQ
>AP019314.1|BBH39636.1|2318065_2318920_+|universal-stress-protein
MLEKILYADSGTGQTQEMLQALMDLPAIRKASITILRVVPPQITTEALASKWEEGTQMLTKILQEVKIEPSKVSTILRQGDPKDTVCQVADEIGADLILMGSRGLKRLEAILENSVSQYVFQLTNHPMLLVKDDIYVKKIKKVMVALDKSSSADLALDLAIYLLRDYPSAELILARVNPDLKPEFAPTSPKEMEENPIIGPAVAKAKRMNIPYRCVVTGGKPGEQLCKLVDDYNVDLLLLGSPDRRPSVAKSLPDLDRLLGTSLSDYVRVNVNCPVLLARKEGI
>AP019314.1|BBH39647.1|2324035_2324494_+|transposase
MEVLWLKSQKIPHKKICQLAGISPNTLLTYLRDYEEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRIEELTGIKRSPTQVRKFLKSMGMKCLKVGSLPSKADRDEQEEYKEKKLEPRLNEAKEGKRAVFFGSSLLGMVR
>AP019314.1|BBH39648.1|2324680_2324872_+|hypothetical-protein
MGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQGEHLTFAMSINT
>AP019314.1|BBH39649.1|2325008_2325377_+|hypothetical-protein
MLPTQVCELRSKIAALGLMIPITLVLDNARYQKCKIVRKLALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH39650.1|2325400_2325976_+|hypothetical-protein
MISQQMEDGGWLTLRDKKPLTGFSHGVSGIIAALARLYQLTEDDRFLTAIQQGLGYERSVFCLEKRNWPDFRSSSEPKKFMNSWCHGAPGIALSRLCLKESGIWDEQIATEMEIALETTAKQDMGVDHLCCGSFGRAAILNLASDFDMGEKWSLFAQQIVELRELHKKDDPIVKWFDKGFPQTTLANGEVD
>AP019314.1|BBH39651.1|2327637_2328111_+|hypothetical-protein
MSETVYIETSILGYLTARPSRDIIVAANIEITREWWNTRRGDFQLYSSQAVVKETSQGDVAIASQRLEILGNLSLLDLNQNVLDLAERFLERSNLPTKADVDAVHIAVATVHGMDYLLTWNCKHIANAQIQGKLAEISLDLGYQLPILCTPYELLGG
>AP019314.1|BBH39652.1|2328113_2328341_+|hypothetical-protein
MFQDEIVEEIHRIREEYSRSFNHDLKAIFADLQKQQEEGGREVVNLSRKHGLTTRWSGQRKEVGDDATEISRRST
>AP019314.1|BBH39653.1|2328759_2329803_-|transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHQKICQLAGISPNTLLTYLRDYQEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRREELTGIKRSPTQVRKFLKSMGMKCLKVGSLPSKADRDEQEDYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGITIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH39654.1|2329868_2330177_+|hypothetical-protein
MQVVAVQSIQAQSSNRRGSCQNNSSMKTAYSSGWSAGFNGGTHNNTSENERSRNCYDWGYTDGKIEKSKLDMQRMRNESYIYRMCLSTRILDPSIQCQQPRF
>AP019314.1|BBH39655.1|2330286_2330679_-|hypothetical-protein
MPSTVEFPLSDDEALPTIPITLSHAGLSVSANALLDTGSTVNLLPYDIGPQLGAIWEEQTVRLPLAGNLARVEARGLFVYVQIGNLEPVRLAFAWAKTSQIPLILGQTNFFREFDVCFQRSRCTIEIIRF
>AP019314.1|BBH39656.1|2330671_2330890_-|hypothetical-protein
MSLTELILLVNNLSQTDKLSLFKLLAAQIPDAELQVIFSASEYPIWSPYDATEAANILMHMIQDDGEASTHA

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Crispr_ID: AP019314_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_16

2334649-2334768

TypeV

Consensus_repeat	Method
GAGTGCGATGCCAAAGGCACTGCGTAGCAG	CRISPRCasFinder

1 spacers

cas14k

The CRISPR arrays of AP019314_16

>merge|AP019314|16|2334649-2334768|CRISPRCasFinder
GAGTGCGATGCCAAAGGCACTGCGTAGCAGATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACAGAGTGCGATGCCGAAGGCACTGCGTAGCAG

>AP019314|16|16|2334649-2334768|CRISPRCasFinder
GAGTGCGATGCCAAAGGCACTGCGTAGCAG	ATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACA
GAGTGCGATGCCGAAGGCACTGCGTAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39665.1\|2338070_2338301_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39670.1\|2343212_2343785_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39659.1\|2331938_2332685_+\|transposase	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH39664.1\|2336784_2337867_+\|transposase	cas14k	-	gnl\|CDD\|366606
AP019314.1\|BBH39657.1\|2331081_2331306_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225291
AP019314.1\|BBH39671.1\|2343811_2344333_+\|HNH-endonuclease-family-protein	unknown	unknown	gnl\|CDD\|131694
AP019314.1\|BBH39654.1\|2329868_2330177_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39658.1\|2331507_2332011_+\|transposase	unknown	unknown	gnl\|CDD\|379267
AP019314.1\|BBH39666.1\|2338509_2339883_+\|thiophen-and-furan-oxidation-protein	unknown	unknown	gnl\|CDD\|235392
AP019314.1\|BBH39662.1\|2335254_2335713_+\|transposase	unknown	unknown	gnl\|CDD\|379154
AP019314.1\|BBH39668.1\|2340397_2340706_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372702
AP019314.1\|BBH39663.1\|2335899_2336406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH39660.1\|2334237_2334435_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224514
AP019314.1\|BBH39653.1\|2328759_2329803_-\|transposase	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH39667.1\|2339967_2340285_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369576
AP019314.1\|BBH39655.1\|2330286_2330679_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133136
AP019314.1\|BBH39651.1\|2327637_2328111_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350254
AP019314.1\|BBH39656.1\|2330671_2330890_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39669.1\|2340818_2341094_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
AP019314.1\|BBH39652.1\|2328113_2328341_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39671.1\|2343811_2344333_+\|HNH-endonuclease-family-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	2.59798e-10
AP019314.1\|BBH39659.1\|2331938_2332685_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.98571e-20
AP019314.1\|BBH39664.1\|2336784_2337867_+\|transposase	gnl\|CDD\|366606	pfam01385, OrfB_IS605, Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.	2.53224e-18
AP019314.1\|BBH39657.1\|2331081_2331306_-\|hypothetical-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.95945e-19
AP019314.1\|BBH39658.1\|2331507_2332011_+\|transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	5.32211e-08
AP019314.1\|BBH39666.1\|2338509_2339883_+\|thiophen-and-furan-oxidation-protein	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
AP019314.1\|BBH39662.1\|2335254_2335713_+\|transposase	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	1.02469e-05
AP019314.1\|BBH39668.1\|2340397_2340706_-\|hypothetical-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	8.26728e-07
AP019314.1\|BBH39663.1\|2335899_2336406_+\|hypothetical-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.92226e-22
AP019314.1\|BBH39660.1\|2334237_2334435_+\|hypothetical-protein	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	7.31171e-10
AP019314.1\|BBH39653.1\|2328759_2329803_-\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.29369e-22
AP019314.1\|BBH39667.1\|2339967_2340285_-\|hypothetical-protein	gnl\|CDD\|369576	pfam07889, DUF1664, Protein of unknown function (DUF1664). The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.	0.000130846
AP019314.1\|BBH39655.1\|2330286_2330679_-\|hypothetical-protein	gnl\|CDD\|133136	cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	0.000140229
AP019314.1\|BBH39651.1\|2327637_2328111_+\|hypothetical-protein	gnl\|CDD\|350254	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_3.	4.25638e-63
AP019314.1\|BBH39669.1\|2340818_2341094_-\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	9.26307e-05

>AP019314.1|BBH39660.1|2334237_2334435_+|hypothetical-protein
MKYKIVLYRSEEGITVGVPALPGCWSEGDTEEEALTNIQDAIREYLAALEERLQDGEIREIEMQV
>AP019314.1|BBH39659.1|2331938_2332685_+|transposase
MAYSKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>AP019314.1|BBH39658.1|2331507_2332011_+|transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKTNYALGKPKDTVFRNRI
>AP019314.1|BBH39657.1|2331081_2331306_-|hypothetical-protein
MYKISVNPQIHFGKPCIEGTRITVQSVLELLNEGLSFSIIIQDYYPDLQIEDIRACLQYAIALVAAEDIKLVSA
>AP019314.1|BBH39656.1|2330671_2330890_-|hypothetical-protein
MSLTELILLVNNLSQTDKLSLFKLLAAQIPDAELQVIFSASEYPIWSPYDATEAANILMHMIQDDGEASTHA
>AP019314.1|BBH39655.1|2330286_2330679_-|hypothetical-protein
MPSTVEFPLSDDEALPTIPITLSHAGLSVSANALLDTGSTVNLLPYDIGPQLGAIWEEQTVRLPLAGNLARVEARGLFVYVQIGNLEPVRLAFAWAKTSQIPLILGQTNFFREFDVCFQRSRCTIEIIRF
>AP019314.1|BBH39654.1|2329868_2330177_+|hypothetical-protein
MQVVAVQSIQAQSSNRRGSCQNNSSMKTAYSSGWSAGFNGGTHNNTSENERSRNCYDWGYTDGKIEKSKLDMQRMRNESYIYRMCLSTRILDPSIQCQQPRF
>AP019314.1|BBH39653.1|2328759_2329803_-|transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHQKICQLAGISPNTLLTYLRDYQEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRREELTGIKRSPTQVRKFLKSMGMKCLKVGSLPSKADRDEQEDYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGITIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH39652.1|2328113_2328341_+|hypothetical-protein
MFQDEIVEEIHRIREEYSRSFNHDLKAIFADLQKQQEEGGREVVNLSRKHGLTTRWSGQRKEVGDDATEISRRST
>AP019314.1|BBH39651.1|2327637_2328111_+|hypothetical-protein
MSETVYIETSILGYLTARPSRDIIVAANIEITREWWNTRRGDFQLYSSQAVVKETSQGDVAIASQRLEILGNLSLLDLNQNVLDLAERFLERSNLPTKADVDAVHIAVATVHGMDYLLTWNCKHIANAQIQGKLAEISLDLGYQLPILCTPYELLGG
>AP019314.1|BBH39662.1|2335254_2335713_+|transposase
MEVLWLKSQKIPHKKICQLAGISPNTLLTYLRDYEEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRIEELTGIKRSPTQVRKFLKSMGMKCLKVGSLPSKADRDEQEEYKEKKLEPRLNEAKEGKRAVFFGSSLLGMVR
>AP019314.1|BBH39663.1|2335899_2336406_+|hypothetical-protein
MGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGLMIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH39664.1|2336784_2337867_+|transposase
MYGVQEVLIHTDSEIRAVLEFVCEEANKLANCGIYYCRQMLFKAGRYIGKYDLDSQLKNNPHFRAMRSCCAQQLLHDVAESFSSYKGLLGLWNKGQLPNKPRPPKYRKKGGMAVVTYTARYVKLTEKGLRFSLGDQVKAWFGIDSFYLPMPSNLRFEDIKEFRIVPRNLSFYLECVYKQPDQEKVKPNNNVLGIDHGLGNWLTCVSNTGKSFIFDGKKAKSQNQWHNKRVAQIKTGKPPGYWDDELAKITERRNRQMRDATNKAARFIINWCLGNDIYTVVFGGNQRQKDSIELGKKVNQEFVSIPTAKLKNRICQLCEKYGIKFVETEESYTSKASFLDGDSLPKFGEKPGSSLLGMVQ
>AP019314.1|BBH39665.1|2338070_2338301_+|hypothetical-protein
MFKAFSGQLINADCNGAANIIKKVATQLGVSLDKVGRASLTVPQRYKLDSLSKIYRNRIEARFQPASIHRLESPSF
>AP019314.1|BBH39666.1|2338509_2339883_+|thiophen-and-furan-oxidation-protein
MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTPNRQKWQSHRLLYGYIRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGARLAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVERSRQTAQSADLVLLTVSAESGWTEEDEEIYRSVSDRRLILVINKIDLANPETVIYPVEIKRVVKLSAAQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRAKIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK
>AP019314.1|BBH39667.1|2339967_2340285_-|hypothetical-protein
MSNETVTYSLDVVLKEIKDSIKEVSQKFDKIDERFDRLDNRLTKLEIGQADIKGDIKVLDEKIEGIDNRLKSVEGTQKNQVWTLIILLGSAIITAAWKVFFSSNI
>AP019314.1|BBH39668.1|2340397_2340706_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDSLEKRVNERFDKVEDRLTKLEIGVTDLKGDIKVLDEKIEGIDNRLISVEGTQKNQVWTLIILLGSAIITAAWKVFFSSNI
>AP019314.1|BBH39669.1|2340818_2341094_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDKIDERLTKVEIGLTDLKGDIKVLDEKIEGINNRLKSVEGTQKNQVWTLIILLGSAIFTAGWKVFFSSNI
>AP019314.1|BBH39670.1|2343212_2343785_+|hypothetical-protein
MLPTIQLEQLAKSLSEKDWEKITLNLDKEKTVWVAVFRAKISQLEGERNLAIVMNASSMEKATEVDYFITNVVEADTVTASWIVRTYTERNWVEVFYREAKGWLGLREYQVRDKRSLLRHFILVFCAYTFILWHQLTGGLQRQWANRPLNTFVEALEAFRTAMSFRFFEWLTENRDVFAAYKASLGFVWA
>AP019314.1|BBH39671.1|2343811_2344333_+|HNH-endonuclease-family-protein
MFNGKCAYCESKIIVVTYGAIEHFYPKSQYPDLTFTWENLLLSCDKCNDANHKGTNFPLDDITGNPLLIDPTDGVTDPNTHLEFVWDEMAKLASVYGRDRRGQIVEDLFDLNGMRGRKELINYRSQYIKRLLALLRLAKQGDSEVLSVLQEACQPGAEYYAFASIYILPHLPP

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Crispr_ID: AP019314_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_17

2345562-2345633

TypeV

Consensus_repeat	Method
GACACCCCCCTTATCAAGGGGGG	CRISPRCasFinder

1 spacers

cas14k,RT

The CRISPR arrays of AP019314_17

>merge|AP019314|17|2345562-2345633|CRISPRCasFinder
GACACCCCCCTTATCAAGGGGGGATTGAGGGGGGATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGGGGG

>AP019314|17|17|2345562-2345633|CRISPRCasFinder
GACACCCCCCTTATCAAGGGGGG	ATTGAGGGGGGATCCCCCCGCCTATC
GGCACCCCCCTTATCAAGGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39678.1\|2355986_2356310_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39671.1\|2343811_2344333_+\|HNH-endonuclease-family-protein	unknown	unknown	gnl\|CDD\|131694
AP019314.1\|BBH39680.1\|2357801_2358875_-\|magnesium-protoporphyrin-IX-chelatase-subunit-I	unknown	unknown	gnl\|CDD\|177020
AP019314.1\|BBH39665.1\|2338070_2338301_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39670.1\|2343212_2343785_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39675.1\|2349590_2350787_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|234600
AP019314.1\|BBH39681.1\|2358958_2359360_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39673.1\|2345952_2347944_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223733
AP019314.1\|BBH39676.1\|2351897_2353742_+\|probable-reverse-transcriptase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
AP019314.1\|BBH39677.1\|2354431_2355907_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
AP019314.1\|BBH39668.1\|2340397_2340706_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372702
AP019314.1\|BBH39663.1\|2335899_2336406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH39682.1\|2359653_2361786_-\|glycyl-tRNA-synthetase-beta-chain	unknown	unknown	gnl\|CDD\|234925
AP019314.1\|BBH39666.1\|2338509_2339883_+\|thiophen-and-furan-oxidation-protein	unknown	unknown	gnl\|CDD\|235392
AP019314.1\|BBH39679.1\|2356306_2357674_-\|ATPase	unknown	unknown	gnl\|CDD\|226459
AP019314.1\|BBH39667.1\|2339967_2340285_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369576
AP019314.1\|BBH39674.1\|2348072_2349377_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
AP019314.1\|BBH39664.1\|2336784_2337867_+\|transposase	cas14k	-	gnl\|CDD\|366606
AP019314.1\|BBH39669.1\|2340818_2341094_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
AP019314.1\|BBH39672.1\|2344407_2345496_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340861

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39682.1\|2359653_2361786_-\|glycyl-tRNA-synthetase-beta-chain	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
AP019314.1\|BBH39671.1\|2343811_2344333_+\|HNH-endonuclease-family-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	2.59798e-10
AP019314.1\|BBH39680.1\|2357801_2358875_-\|magnesium-protoporphyrin-IX-chelatase-subunit-I	gnl\|CDD\|177020	CHL00081, chlI, Mg-protoporyphyrin IX chelatase.	0
AP019314.1\|BBH39666.1\|2338509_2339883_+\|thiophen-and-furan-oxidation-protein	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
AP019314.1\|BBH39664.1\|2336784_2337867_+\|transposase	gnl\|CDD\|366606	pfam01385, OrfB_IS605, Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.	2.53224e-18
AP019314.1\|BBH39675.1\|2349590_2350787_-\|alanine-racemase	gnl\|CDD\|234600	PRK00053, alr, alanine racemase; Reviewed.	0
AP019314.1\|BBH39673.1\|2345952_2347944_+\|hypothetical-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	1.28689e-179
AP019314.1\|BBH39676.1\|2351897_2353742_+\|probable-reverse-transcriptase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.01872e-129
AP019314.1\|BBH39677.1\|2354431_2355907_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.88488e-117
AP019314.1\|BBH39668.1\|2340397_2340706_-\|hypothetical-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	8.26728e-07
AP019314.1\|BBH39663.1\|2335899_2336406_+\|hypothetical-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.92226e-22
AP019314.1\|BBH39679.1\|2356306_2357674_-\|ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	8.93567e-20
AP019314.1\|BBH39667.1\|2339967_2340285_-\|hypothetical-protein	gnl\|CDD\|369576	pfam07889, DUF1664, Protein of unknown function (DUF1664). The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.	0.000130846
AP019314.1\|BBH39674.1\|2348072_2349377_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.10948e-83
AP019314.1\|BBH39669.1\|2340818_2341094_-\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	9.26307e-05
AP019314.1\|BBH39672.1\|2344407_2345496_+\|hypothetical-protein	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0.000198121

>AP019314.1|BBH39672.1|2344407_2345496_+|hypothetical-protein
MSRPVVYFAVTNHGFGHAVRSASVVANIIELNPEILPILVTTAPRWLLDSYISGEYIQRHRGFDVGVIQSDSLTMDKLATKEKLEQIIAQSRSIIASEVNFIKTNRVGLVVADLPPLAALIAKSAGLPCWMIGNFGWDFIYRDWGEEFASISDWISRCYNQCDRLFKLPLAEEMTAFPHVTEANLTGGTPRYSEEQLRQEFKLNAPKEKTILLSFGGLGLEAIPYDNLASFPDWQFITFEKNAPELPNLVRLQDKPDRSYRPVDFMPLCDRIISKPGYSTFAEALKLEVPIVSLMREGFAESAILLAGIQDYSDHQIISSEEFFQGNWDFLRQAPQPPRLKVKLAKDGAESIARAIVEYFER
>AP019314.1|BBH39671.1|2343811_2344333_+|HNH-endonuclease-family-protein
MFNGKCAYCESKIIVVTYGAIEHFYPKSQYPDLTFTWENLLLSCDKCNDANHKGTNFPLDDITGNPLLIDPTDGVTDPNTHLEFVWDEMAKLASVYGRDRRGQIVEDLFDLNGMRGRKELINYRSQYIKRLLALLRLAKQGDSEVLSVLQEACQPGAEYYAFASIYILPHLPP
>AP019314.1|BBH39670.1|2343212_2343785_+|hypothetical-protein
MLPTIQLEQLAKSLSEKDWEKITLNLDKEKTVWVAVFRAKISQLEGERNLAIVMNASSMEKATEVDYFITNVVEADTVTASWIVRTYTERNWVEVFYREAKGWLGLREYQVRDKRSLLRHFILVFCAYTFILWHQLTGGLQRQWANRPLNTFVEALEAFRTAMSFRFFEWLTENRDVFAAYKASLGFVWA
>AP019314.1|BBH39669.1|2340818_2341094_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDKIDERLTKVEIGLTDLKGDIKVLDEKIEGINNRLKSVEGTQKNQVWTLIILLGSAIFTAGWKVFFSSNI
>AP019314.1|BBH39668.1|2340397_2340706_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDSLEKRVNERFDKVEDRLTKLEIGVTDLKGDIKVLDEKIEGIDNRLISVEGTQKNQVWTLIILLGSAIITAAWKVFFSSNI
>AP019314.1|BBH39667.1|2339967_2340285_-|hypothetical-protein
MSNETVTYSLDVVLKEIKDSIKEVSQKFDKIDERFDRLDNRLTKLEIGQADIKGDIKVLDEKIEGIDNRLKSVEGTQKNQVWTLIILLGSAIITAAWKVFFSSNI
>AP019314.1|BBH39666.1|2338509_2339883_+|thiophen-and-furan-oxidation-protein
MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTPNRQKWQSHRLLYGYIRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGARLAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVERSRQTAQSADLVLLTVSAESGWTEEDEEIYRSVSDRRLILVINKIDLANPETVIYPVEIKRVVKLSAAQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRAKIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK
>AP019314.1|BBH39665.1|2338070_2338301_+|hypothetical-protein
MFKAFSGQLINADCNGAANIIKKVATQLGVSLDKVGRASLTVPQRYKLDSLSKIYRNRIEARFQPASIHRLESPSF
>AP019314.1|BBH39664.1|2336784_2337867_+|transposase
MYGVQEVLIHTDSEIRAVLEFVCEEANKLANCGIYYCRQMLFKAGRYIGKYDLDSQLKNNPHFRAMRSCCAQQLLHDVAESFSSYKGLLGLWNKGQLPNKPRPPKYRKKGGMAVVTYTARYVKLTEKGLRFSLGDQVKAWFGIDSFYLPMPSNLRFEDIKEFRIVPRNLSFYLECVYKQPDQEKVKPNNNVLGIDHGLGNWLTCVSNTGKSFIFDGKKAKSQNQWHNKRVAQIKTGKPPGYWDDELAKITERRNRQMRDATNKAARFIINWCLGNDIYTVVFGGNQRQKDSIELGKKVNQEFVSIPTAKLKNRICQLCEKYGIKFVETEESYTSKASFLDGDSLPKFGEKPGSSLLGMVQ
>AP019314.1|BBH39663.1|2335899_2336406_+|hypothetical-protein
MGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGLMIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>AP019314.1|BBH39673.1|2345952_2347944_+|hypothetical-protein
MSEQMISPETQNPEAITVEVQPVHIPEEHREDIGPMDDNVAESWRYNPQVINDYYRRRPLDVVGRLIEIALPVLSFVIGIWWDKLRGKSPKNEIRRAVQLREMLTKLGPTYIKIGQALSTRPDLVPPLYLEELTTLQDQIPSFPNEIAYRFIEEELGYSPEEIYAELSPNPIAAASLGQVYKGKLKTGERVAVKVQRPDLIRCITLDVYIMRSLATWVKGNIKRLRSDLVAITDELASRIFEEINYLHEGQNAEKFAQLYGHIAEIYIPKIYWKYTGRRVLTMEWVDGTKLTNIKEIQAQGIDATHLVNVGVQCSLRQLLEHGFFHADPHPGNLLATPDGKLAYLDFGMMSNIEPYQRYGLIEAVVHLVNRDFESLAKDYVKLDFLSPTTNLEPIVPAFSEVFGNALGASVAELNFKSITDKMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDPSTELRDSLRDLLFKDGTFRWNRLENLLRNAKDSNDFNFEKVTDQALDFLLSDRGIFIREKLVNELVNALDNFGRRTWFNLTVNFRQQVGLAVQETPPELLGDAKSFEHLRNIFTILQETKGFDAMAMVPVMTKLIAKPETQQMGQKIAEGLLQKSLARLIRYLVLEFDRPNHRQNGELPKALPAAD
>AP019314.1|BBH39674.1|2348072_2349377_-|cytochrome-P450
MTISKDLPLPPGSFGLPLLGETIAFLTDGDFASKRHNKYGQLFRTHIFGSPTIILSGAEANRFLLSNENKYFAATWPKSTKTLLGSASLAVHTGDVHASRRRLIYQAFQPRSLASYIPTVETITAHYLERWQTATTLSWYPELRNYTLDIACKLFVGLDDGSATKLGEAFDTWCAGLFTLPIPLPWTAFGKALRCREELLEAIETIILERKKNDDLGQDALAILLQAKDENGQSLSLAELKDQVLLLLFAGHETLTSAIATFCLQMALHPDIFQLVLEEITNFDLSTPLSVDTLKQMTYLDRVLKEVLRFTPPVGGGFRRVIEDCQFNGYHLPKGWVVQYQISNTHKDNNIYSHPETFDPDRFLAEEKPYGYIPFGAGLRECIGKEFARLEMKILAVRLVQKYDWQLLPNQDLTLTSIPTPHPRDGLQVTFKPR
>AP019314.1|BBH39675.1|2349590_2350787_-|alanine-racemase
MVFSIEPKIINPPKNRHDYQLSEAIRYRAWVEIDRSAIQQNVRKVKALLAPKTELMAVIKADAYGHGAVKVANSVLEAGAQSLAIATIGEGIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVQIFASVMRRLEQRLPVHIKLDTGMSRLGTQWQNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRFQQAIAELRSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPVLQVKARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSNRLKVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGPQCITADDWARDLGTISWEILCGFKHRLPRIIISNG
>AP019314.1|BBH39676.1|2351897_2353742_+|probable-reverse-transcriptase
MTKAREGKGFGKPKTTKTTNVWKTINWAKVQRYVFKLQKRIYQAAKSGQDAKVRRLQRLLVKSYYARLLAVRKVTQDNQGKKTAGVDGMIAISPEQRLNLTEEIKGTLKAKPLRRVWIPKPGRDEKRPLGIPTIKDRARQALIKSALEPEWESRMEGTSYGFRPGRSAHDAISKIYITINQSSYFVLDADIAKCFDRINHNFLLSKIHCPSSLKRDIKQWLKAGVLDNGVFEETETGTPQGGVISPLLANIALDGMARLIETLFPKKGNGKNQAVLIRYADDFVVISPSLEIIEQCKTAISEWLKPIGLELKPEKTRVCHTLKPIEYNGKMEEPGFDFLGFNIRQYPVGKYKSGKDGAKRLIGHKTHIKPSQKAVKTHTEAIKGVIKKHKTAPQSALISRLNPIIRGWANYYSGVVSMDTFNKLDNTTWLMLRAWTVSRCGKANYEKLRNYFRPDTVKLSNGKERHESWLFKTKDGHQLCFHNWTPIVRHTLVRADASPYDGNWTYWATRRGQAIDTPTRVAKLLKKQQGKCSRCGQYFTPSDLIEVDHIHPLSLGGKDEYKNLQLLHRHCHDDKSASDGSPKSSTLTPLEVSIDNTMTTKRSQAVSLTREQSN
>AP019314.1|BBH39677.1|2354431_2355907_+|RNA-directed-DNA-polymerase
MALVNNLKLGNKSKATRRVWIPKPNTDEKRPLGIPTMYERALQALVKLALEPEWEAKFEPNSYGFRPARSAHDAIGAIYISINKKPKYVLDADISKCFDQINHQKLLTKLQTYPKLRQQIKAWLKSGVMDGKNLFPTNEGTPQGGVISPLLANIALHGMEERVKQYARTLKGNKSKNEQALTLIRYADDFVILHEDLKVIKECQEIIKQWLAEMGLELKPSKTRISHTLETYDDYVGFDFLGFNIRQYQVGKHHGAKSSKGVKLGFKNLIKPSAEKVKSHLKKLGEVVNSQKSSPQDALIKRLNPIIRGWSNYYSSVVSSKTFTDCDYYFFEKLKRWADRRHPMKNKTWIMRKYWHTEGKDNWVFSTREGKNPFKLARHLDTKIVRYVKVKGDKSPYDGDLIYWSSRMGKHPEMPPEKAVLLKRQQGRCAYCGLYFQDGDILETDHIIPKSKGGKNNRDNKQLLHRHCHDSKTALDKTGTHDKEPLERGAV
>AP019314.1|BBH39678.1|2355986_2356310_-|hypothetical-protein
MIPVTRISEPPVLAKNAARWLEALESIKSNNKATKAQINQAQNKYRHPQVKDALVGLRQKTNREKPQLQSPLGIYFEKPKIAETQIYQGKSQIEVNPLSRNGLSLFC
>AP019314.1|BBH39679.1|2356306_2357674_-|ATPase
MWVESIKLENIKCFQNQEIKFISNPNNQRHWRAKPYHWITLLGENGVGKSTILQALALLLAGPEAAKELLPRPTGWICNPKTPGKLTAVLHQEDGDAGKFGTDKTRKTFAYSYFVTGKERLELGGSKDKQTYTEPALIEENTKILSWLRANAFASDNHGWFAVGYGAFRRLTRVSQVIIPSLEPPQRSSNFFSQFNEDTSLSSFERWMVYLDYRIAKNPQDIQAKQMKKIGEEAITKLLPGNVEIAEVTADGLIQFLVNGQKVPTISLSDGFRSMIALAGDLIWRLLQSFPNLDNPTEASGVVLIDELDIHLHPSWQREIAGWLQEVFPKLQFFVATHSPLIAAGAGPNSLTLRIDLVAGELEIVEIHYKELAANVDRTLTSSAFGLKSTYPTDTENKIKRYHQLNRKKKNLAAAEKQEYEQLSLFVREVKPFGEISQPNSLESRIDALLEERLS
>AP019314.1|BBH39680.1|2357801_2358875_-|magnesium-protoporphyrin-IX-chelatase-subunit-I
MTVTPQAPPKTRRVVFPFTAIVGQEEMKLSLMLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIDVVANDPFNSDPNDPDLMSDEVRQRVDEAIPLTIAKKKVTMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIHTVKEPPLRVKIVEQRAEFDGNPLSFLEKYNLEQEELQRKLVEAQNLLPSVELDYDLRVKISEVCSELDVDGLRGDIVTNRAAKALAALEGRTTVTVDDIRRVIVLCLRHRLRKDPLESIDSGYKVLKAFNRVFGLEENS
>AP019314.1|BBH39681.1|2358958_2359360_-|hypothetical-protein
MFTEMADSELQQQVQRLHRLTVWGRWLFVLGCWLGIGSASLWVLWDDIALMRQYFTWTALRYALAFNYWPSIGLAFCFAITGAVLVWQSRNIILGLSPREKLRLEQRVQKIRAEGSRHPLWRWILKSREKDLQ
>AP019314.1|BBH39682.1|2359653_2361786_-|glycyl-tRNA-synthetase-beta-chain
MDFLLEVGTEELPADFVDSAIAQWRERVSKSLETESLDATAIQVYATPRRLAVLITGLPTEQEARSEEIKGPPVSAAYKNGQITPAGEGFARKQGVSTAAFSIRATDKGEFVYIEKTIPGRPTAEILTELIPQWITRLEGRRFMRWGDGDLRFPRPIRWLLTLVDGEVLPLELINGSTTLTSDRLTFGHRILHPQSLAISHPQAYLTSLRSIFVEADPQVRQQIITAQITTLAKKLKGVAEIPADLLAEVTNLVEYPTAIVGKFDDEFLELPPEVIITVMVTHQRYFPVKTPQGLSPYFITISNGDPQKSEIISAGNERVIRARLADARFFYTADCDEPLDSFLPQLETVTFQEELGTMRDKVDRIMEIAQMIVEQLNLDEQSRSDIESTAMLCKADLVTQMVYEFPELQGVMAEKYALISGESPVVARGIFEHYLPRNAGDILPETITGQVVGIADRLDTLVGIFGLGMLPTGSSDPFALRRAANAIISIIWSADFNINLLALIEQIAQDFVTSHPDKPNPVNLIKDFFLQRLQTLLIDDLRIDYDLVNAVLGENDPEYKSRALENLLDTRERARFLCQIRQDGQLANIYETVNRSTRLAQKGDLDTTTLEAKGIINTELFEQSSEPAFYNALIALIPETISAREQRDYQRLVTALTAISPLVADFFDGENSVLVMAEKESVRRNRLNLLGLLRNHARVLADFGAIVKG

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Crispr_ID: AP019314_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_18

2679457-2679558

Orphan

Consensus_repeat	Method
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_18

>merge|AP019314|18|2679457-2679558|CRISPRCasFinder
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAAGCGTAAACGACCACTCTAATCTCTGATCTCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA

>AP019314|18|18|2679457-2679558|CRISPRCasFinder
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA	GCGTAAACGACCACTCTAATCTCTGATC
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH39970.1\|2679586_2680843_+\|serine/threonine-protein-kinase-like	unknown	unknown	gnl\|CDD\|373105
AP019314.1\|BBH39962.1\|2667805_2668960_-\|NADH-dehydrogenase-subunit-7	unknown	unknown	gnl\|CDD\|180969
AP019314.1\|BBH39978.1\|2687396_2687810_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
AP019314.1\|BBH39961.1\|2665999_2666917_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369942
AP019314.1\|BBH39979.1\|2687814_2688270_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
AP019314.1\|BBH39965.1\|2674886_2675297_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143581
AP019314.1\|BBH39972.1\|2682071_2682545_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273292
AP019314.1\|BBH39964.1\|2672972_2674607_+\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|100087
AP019314.1\|BBH39960.1\|2664844_2665738_+\|transposase	unknown	unknown	gnl\|CDD\|372577
AP019314.1\|BBH39969.1\|2679090_2679387_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39974.1\|2683420_2683708_-\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	unknown	unknown	gnl\|CDD\|178809
AP019314.1\|BBH39963.1\|2669558_2672528_+\|proline-oxidase	unknown	unknown	gnl\|CDD\|143442
AP019314.1\|BBH39975.1\|2684045_2684546_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH39966.1\|2675286_2676639_-\|rRNA-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|237856
AP019314.1\|BBH39971.1\|2681019_2682141_+\|serine/threonine-protein-kinase-like	unknown	unknown	gnl\|CDD\|373105
AP019314.1\|BBH39973.1\|2682597_2683428_-\|abortive-infection-protein-like	unknown	unknown	gnl\|CDD\|376806
AP019314.1\|BBH39977.1\|2687143_2687377_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|177058
AP019314.1\|BBH39967.1\|2676635_2677187_-\|esterase	unknown	unknown	gnl\|CDD\|223477
AP019314.1\|BBH39976.1\|2684569_2686672_+\|kinesin-light-chain	unknown	unknown	gnl\|CDD\|315987
AP019314.1\|BBH39968.1\|2678222_2679104_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH39972.1\|2682071_2682545_-\|hypothetical-protein	gnl\|CDD\|273292	TIGR00836, Ammonium_transporter, ammonium transporter. The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf. [Transport and binding proteins, Cations and iron carrying compounds].	1.25902e-20
AP019314.1\|BBH39964.1\|2672972_2674607_+\|phosphoglucomutase	gnl\|CDD\|100087	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
AP019314.1\|BBH39962.1\|2667805_2668960_-\|NADH-dehydrogenase-subunit-7	gnl\|CDD\|180969	PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H; Validated.	0
AP019314.1\|BBH39978.1\|2687396_2687810_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.48765e-76
AP019314.1\|BBH39961.1\|2665999_2666917_+\|hypothetical-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	4.6043e-15
AP019314.1\|BBH39979.1\|2687814_2688270_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	3.85432e-96
AP019314.1\|BBH39965.1\|2674886_2675297_-\|hypothetical-protein	gnl\|CDD\|143581	cd07177, terB_like, tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.	7.5885e-10
AP019314.1\|BBH39966.1\|2675286_2676639_-\|rRNA-SAM-dependent-methyltransferase	gnl\|CDD\|237856	PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.	0
AP019314.1\|BBH39960.1\|2664844_2665738_+\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.13996e-21
AP019314.1\|BBH39970.1\|2679586_2680843_+\|serine/threonine-protein-kinase-like	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	6.97903e-158
AP019314.1\|BBH39974.1\|2683420_2683708_-\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.61351e-43
AP019314.1\|BBH39963.1\|2669558_2672528_+\|proline-oxidase	gnl\|CDD\|143442	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.	0
AP019314.1\|BBH39971.1\|2681019_2682141_+\|serine/threonine-protein-kinase-like	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	5.34923e-25
AP019314.1\|BBH39973.1\|2682597_2683428_-\|abortive-infection-protein-like	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.01059e-09
AP019314.1\|BBH39977.1\|2687143_2687377_-\|50S-ribosomal-protein-L31	gnl\|CDD\|177058	CHL00136, rpl31, ribosomal protein L31; Validated.	2.4596e-41
AP019314.1\|BBH39967.1\|2676635_2677187_-\|esterase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	4.3078e-46
AP019314.1\|BBH39976.1\|2684569_2686672_+\|kinesin-light-chain	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	1.52522e-16

>AP019314.1|BBH39969.1|2679090_2679387_-|hypothetical-protein
MLDIFPSKSKDKGDSGTSAKSDNYLTSAEKSLLSDLLKVRAATALSFEIETDRIGEADLQDKLEKLADKGYIKVNEEESYKIFTPTWKTRWLRVNGIL
>AP019314.1|BBH39968.1|2678222_2679104_-|hypothetical-protein
MVFCSQVLTELDKFPFFSSFTHYLFLVDSQTAAATDLSSEIRKLLGEDRWPFVVTAIIIGVAVETRSSYFSAFRIRHLFPDLKKDFLNTFVRLLILKVLISILLYLFIQFIFSLLSSIEDNVYVGLIIALVFGFIISSLNPNLEQIDQVTGGFSLSTIAPVSSGIKKLLELYQGFQISIIKPLDTKLLKKRTSLYNSIKPRFNCFQIVTLQEYIQELISRFTLKETQEKYQGRLNAIIGGNFGDEDKRERLIWLLFDIMEVTYEEINKIRNHPDQSEILIRLGEIEQGNSTIN
>AP019314.1|BBH39967.1|2676635_2677187_-|esterase
MLHGWGADAMDLAPLASMLDLADCQFLFPNAPFDHPQVPGGRAWYALETSDYQGLVASRQQLHDWIISLEATTGIPLERTFLTGFSQGGAMTLDVGLSLPLAGLGSLSGYLHGEPHPQGPQNVLIVHGKQDPVVPIAAARQARDLLLGLGVNVEYHELNMGHEIPIPALTILRQFLRNRLETA
>AP019314.1|BBH39966.1|2675286_2676639_-|rRNA-SAM-dependent-methyltransferase
MNNARQLALLILRDIDRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIVRRQRTLDALLDRLGKKTAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGDDPLLLPENTASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWHGIADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCFSEYYTETGAIEVLPHRHNQDGFFMAKLVKEVWDEK
>AP019314.1|BBH39965.1|2674886_2675297_-|hypothetical-protein
MKNKQLLKILIGVAWIDGVIQPSERNYLRQVAVREKLDDDPEIKPLLSELKPVKTGECYRWLESYLGDNPSPEIYQDLLTSISTLIYSDDDVDIQEAKLLTKVQSFDPTHDSHRSMLDKLVTGIQKLYHRAITGSN
>AP019314.1|BBH39964.1|2672972_2674607_+|phosphoglucomutase
MTIETVATKPFSDQKPGTSGLRKSVPVFQQPHYLENFIQAIFNTLDGIEGQTLVVGGDGRYYNRQAIQTILKIAAANGIGRILVGTDGIVSTPAISGLIRENNAFGGIVLSASHNPGGPEGDFGIKYNITNGGPAPENITDAIYAETKVISSYKILLGADINLDRPSSFKLGTMDVEVIDAVTPYVKMMEKIFDFDRIQALLTSGKFKMCMDSLHAVTGPYAYAIFEQRLGAPKGTVLNGIPLEDFGGGHPDPNLVYAHDLVEILFGQEAPDFGAASDGDGDRNMILGRNFFVTPSDSLAVLTANAHLVPGYQNGITGVARSMPTSAAADRVAAKLGIDCYETPTGWKFFGNLLDAGKATLCGEESFGTGSNHIREKDGLWAVLFWLNILAVKGESVEEIVRSHWQEFGRNFYSRHDYEEVALEPAKEMMARLQKLVLDLKGQQFGNYEVEYADDFSYTDPVDGSVSKNQGIRIGFTDGSRIIYRLSGTGTKGATLRVYLESYEPDASKHDIDTQKALQPLIDLAEEIGQIRQSTGREQPTVIT
>AP019314.1|BBH39963.1|2669558_2672528_+|proline-oxidase
MVIQIDSTQNYETKTQEIARQLLAETREKKGLWSALQDQMRWDDKLLDWAMSNPNLRVQLFRFIDCLPALRSNAEIANHLQQYLGDASVELPSALKSILNFSDPNSLPAQTAASLISKSVETLARKYIAGEDLGQITRTVTRLRKEKMAFTIDLLGEAVITEAETQVYLQSYLDLMTHLAQEATKWNKVSQIDEADGDLLPQVQVSVKLTAFYSQFDPMDPIGSKEKVCDRIRLLLRRAQELGVAVHFDMEQYVYKNLTLAILKELLLEEEFRSRTDIGITLQAYLRDSAQDLQDLINWAKKRGYPLTVRLVKGAYWDQETIKSRQNHWPQPVYNEKSATDANYERMTQLLLENHQYLYAAIGSHNVRSQALACAIAESLEIPRRRFEMQVLYGMGDQLAKALVKRGHRVRVYSPYGQLLPGMAYLIRRLLENTANSSFLRQNLEDRPVEDLIAAPRVLGKDNPIIPGFPNAPDTDYANEQLRNKASQALTFVKNSLGKTYLPLINGEYVTTNVQINSVNPCNPQEIVGKVGLIEVEQAEKAIIAAKQAFPAWKRTPVAKRAEILRKAADLMEARRHELSAWICLEVGKVIQQADPEVSEAIDFCRYYASEMERLDLGHNFDVAGENNRYSYQPRGIALVISPWNFPLAIAVGMTVAALVAGNCTLLKPAETSSVITAKFAEILLEAGIPAGVFQYIPGKGSQVGAHLVSHPDVHLIAFTGSREVGCRIYTDASIVQKGQKHLKRVIAEMGGKNALIVDESADLDQAVVGAVKSAFGYTGQKCSACSRIIVLESVYDSFVDRFVEATKSLNIGPTDLPSTEVGPVIDEKAQARIREYIETGKKEAELALEMPIPEVGYFVSPTVFKNVPPDAVIAMEEIFGPVVAIIKVSNFEEALAVANGTDYALTGGLYSRTPAHINRAMQEFEVGNLYINRGITGAIVSRQPFGGFKMSGVGSKAGGPDYLLQFLEPRHISENIQRQGFAPIEGAD
>AP019314.1|BBH39962.1|2667805_2668960_-|NADH-dehydrogenase-subunit-7
MVLNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLADIAVPKRAQYIRVIMLELNRIANHLLWLGPFMADVGAQTPFFYIFREREMIYDLWEAATGMRLINNNYFRIGGVAVDLPYGWVDKCVDFCDYFDPKVDEYEKLITNNPIFRRRIEGIGCITRDEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWEVHWETAGDCFARYLVRIREMRESVKIIRQALKGLPGGPYENLEAKRMAEGKKSAWNDFDYQYIAKKVAPTFKIPKGEHYVRLESGKGELGIFIVGNDDVFPWRWKIRAADFNNLQILPHILKGVKVADIMAILGSIDIIMGSVDR
>AP019314.1|BBH39961.1|2665999_2666917_+|hypothetical-protein
MSDPSETIITKITAPAGYTISGPDNATATILDNDGNAANDNLVGTGFADALAGVGGNDTLDGGAGNDTLDGGANNDTYLFDTDLVLNSDRLIDASGIDTLNFAATTTKTINLNLGSPVAQTVTAGNLTLTLASAIAFENVIGGSLNDTILGNSLVNSLTGGAGNDSLTGGLGKDILTGSDGLDTLNYNSLGESLLTGFDVIQGYNGTGASLDSINAPAPIAPITLTASKGTASSLTEAAIQLVLTNAAFAANTAAAFTLDPLANPNYANDTFIALNNGVAGFQAANDAIIQLSGYKIAVAPVLVI
>AP019314.1|BBH39960.1|2664844_2665738_+|transposase
MILGQEIIYNFAMFISKIMDYQNLSDEQFKRRFGVYKQTYRKMVESVKSVEADSNSPSKRGPKPKLSIEEQVLVTLEYWREYRTYFHIGTSWELSESTICRIVNKTEKMLLQSGNFRLKGKKALLNQAEIPVITVMDVTETPIERPQKKQKDFFSGKRGYHTLKSQLVADQNTEEIICVFCGKGRGHDFSLFKKSRVRFHPLTTSIEDSGYQGIAAYHSNSYTPKKKSKNRKLTELEKEYNKALAKERIIIEHINRKLKIFKILSCKYRNRRRRYSLRVNLLAAIYNCELGIGIAAS
>AP019314.1|BBH39970.1|2679586_2680843_+|serine/threonine-protein-kinase-like
MGRSLKVKSEYIPRVKQAVKLNGYASQELLAEDLGFAKSTISLFLNGKSISNLNFFEICQKLALDYREITDWDELEETAAATSEDEGENRAADFSKYVERPPVEQLCLETVSQAGSLLRIKSAKGMGKTLLVDRILSQVDKREYKTVSFSFLQASKGILGDLDRLLSWFALIISKKLGLAALFQEKWQEGLGLYSCTAYFEDHLLKKLDKPLILVLEEIDSLFAYTSVADDFLSLFRLWHEEAKNNNTWQKLHLIITYSTENYVPADLNKSPFNVGTEILLPDFTLEQVLTLANKYQANLGKDELQKIINLVGGHPYLIQKAIYAITQKQLSLADFLETAATEAGIYGDHLRGHLLNLQEHPNLAAGMKKVVESSSPVDLGATINWQLHSLGLVTFVQNAVQPRYPLYSNYFRYRLSS
>AP019314.1|BBH39971.1|2681019_2682141_+|serine/threonine-protein-kinase-like
MATNFYHIGGSVPLNAPSYIKREADDIFYDYLKNGQYCYVLNSRQMGKSSLWVQTQKRLKEDNIDCATIDLSGIGKNISEDIWYRVLFEQLVKRFDLSIRGKEQTWWDERAYKSAINRLDQFVEEILLREVSRPIVICFDEIDSVLSLNFFTDDFFAWLRSCHEKRPHNRDYQRLTFCMLGVATVSNFILDNNRSPFNIGQDIRLSGFTIKDARKLAEGLQDKVIAPERVLEEVIEWTGGQPFLTQKICNLISTSRTGFGKESPANPINVGDFIQSQVISNWVSQDSPEHLKTIRNRLLNKRVTGRRMLKLYQEILKNGEITDDGSPDQIELRLTGLVVQDRQKLKVYNKIYRNVFNETWVTTDERPGHSSWN
>AP019314.1|BBH39972.1|2682071_2682545_-|hypothetical-protein
MNRLLSFLEYRPRLRNILSFCFSLIVMLLIGVGKVTAQDLNNSTLDLVANLWMLIAGSLVFFMNAGFAMLETGFCRTNNATNVLAKNLIVFCVSALAYWMFGFGLMFGNTSALGNSFSGDTGFFLEILTPNNQYSQFQELWPGRSSVVTQVSLKTFL
>AP019314.1|BBH39973.1|2682597_2683428_-|abortive-infection-protein-like
MNKRLRVIATYPVPLRLGIFILLLLFLWLPIALPLYHFFATNANLVSILTLSVLYLEFLGLSHWWGRTIYGDEGLADYGLIWRIKTPIELINGLAIGLFFTFSLFLSQAFLGWLNFLPANPQIGKIILEGFLVALAVGFAEELLFRGWLLGELEKDYRPAIALVISALIFALAHFIKPLAEIIRTFPQFPALVLLGLILGWAKRACGGSLGKSIGLHGGLVWAYYILNVGQLIKYTGTVPDWLTGIDKNPLAGVMGLLFLTILAIWIRKKAVLSER
>AP019314.1|BBH39974.1|2683420_2683708_-|ATP-dependent-Clp-protease-adaptor-protein-ClpS
MSTEVIEKRSTATIRKPAPRYRVLLHNDDFNSMEYVVQSLMQTIAGMTQPQAVDIMMEAHTNGTALVITCIQEHAEFYCETLKNKGLTSSIEPDE
>AP019314.1|BBH39975.1|2684045_2684546_+|hypothetical-protein
MATDELQNLDKNIQRLKEQLAGIRDAWTVARSEDKVLLEQRINDKRIEIKELEREKWDLIASESQEASFPDAEVMVAEIVTELTAITAEPPPELASVQILESLNQILAKLNQPERSAAAKLKAALSTIPPFVSLTYEAELDTESTFKRYFPTFNRAIAGVKNRLKK
>AP019314.1|BBH39976.1|2684569_2686672_+|kinesin-light-chain
MGKSTVNFVGREDELTLIHQKLQTEQGVIVCAVEGLGGIGKTALALEYAKRYQQEYAAQYWLSLRLSGLAEEIVKLAGLYLSLPEILKKESLEKQVYWYWQNWLPQQGKLLLILDDVPNIDRIPDRMLPKDSRIKILVTTRERCLSTEFQSIALDVLPLDKCVELLTKIVGTAKVEQEKALVEQICHEILGRLTLAVELVGEYLAKNRHLKFSHLRDKLNLAHTALTKERNHRDYGHLGVAAAIKISWDDLSFAVQKVAMLLSLFAPVAIAWTLLEDTAKSTEITESELEEARGQLDNSHLMQPVDEDYSFYRIHPLVREFFQQQLQEIPKINSLYRCAFVETLLTIAENIPQTPTREIIAAVTPAIPHLQLVSQTMLDDIPNLEDNLSRVFLGVASFYKGQGEYDLAAVTLTKCCEEIQSRLGENHPIVADILNNLAVLYEFQGRYAEAEPLYKRSVSLIKQLLGENHPSVATSVNNLALLYQCQGRYTEAESLYKHSLSLREQLLGENHLDVAQSLNNLVVLYEYQGRYAEAEPLCKRCLSLIEQLLGENNLYFATSLNNLAGLYCSQGRYAEAEPLYKRSLSLKEQLLVENHPDFATSLNNLAELYQCQSRYAEAEPLYKRSLSLREQRLGENHPIVATSLNNLAVLYESQGRHAEAEPLYVRAIAIYQERLGENHPDTQKVRQNFMILSNKAAAFL
>AP019314.1|BBH39977.1|2687143_2687377_-|50S-ribosomal-protein-L31
MPKKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEGRVDRFLRKYKMGDKSSKKADQK
>AP019314.1|BBH39978.1|2687396_2687810_-|30S-ribosomal-protein-S9
MQATDSKNKVVYWGTGRRKSAVAAVRLVPGTGAITVNGRDGETHFNRIPTYIQTIKAPLETLGLENEYDIIVKAEGGGLTGQADAVKLGVARALCQLAPENRPPLKSEGYLTRDPRAKERKKYGLHKARKAPQYSKR
>AP019314.1|BBH39979.1|2687814_2688270_-|50S-ribosomal-protein-L13
MNKTPLPNLETLEQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGAEHPHQAQQPEVLAINTIPAGGN

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Crispr_ID: AP019314_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_20

3044939-3045038

Orphan

Consensus_repeat	Method
CAAGTTTGACAGCCTGTCTTTTGACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_20

>merge|AP019314|20|3044939-3045038|CRISPRCasFinder
CAAGTTTGACAGCCTGTCTTTTGACAAAAAAGTAAAAGTTTGCTTTTAACTGTCCCATTGATTCATTCTACACCAAGTTTGACAGCTTGTCTTTTGACAA

>AP019314|20|20|3044939-3045038|CRISPRCasFinder
CAAGTTTGACAGCCTGTCTTTTGACAA	AAAAGTAAAAGTTTGCTTTTAACTGTCCCATTGATTCATTCTACAC
CAAGTTTGACAGCTTGTCTTTTGACAA

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH40298.1\|3044529_3044907_-\|plastocyanin	unknown	unknown	gnl\|CDD\|235060
AP019314.1\|BBH40297.1\|3042453_3044181_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|180319
AP019314.1\|BBH40306.1\|3051696_3052500_-\|cobyric-acid-synthase-like	unknown	unknown	gnl\|CDD\|225974
AP019314.1\|BBH40304.1\|3050029_3050611_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315619
AP019314.1\|BBH40299.1\|3045099_3045420_+\|cytochrome-c553	unknown	unknown	gnl\|CDD\|184253
AP019314.1\|BBH40305.1\|3050699_3051620_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40290.1\|3036319_3036529_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH40303.1\|3048651_3049023_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40300.1\|3045536_3047216_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371750
AP019314.1\|BBH40307.1\|3052697_3054035_-\|UDP-N-acetylmuramyl-tripeptide-synthetase-like	unknown	unknown	gnl\|CDD\|223840
AP019314.1\|BBH40292.1\|3036779_3037013_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40302.1\|3047757_3048051_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40295.1\|3038546_3038792_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379816
AP019314.1\|BBH40289.1\|3036047_3036275_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226603
AP019314.1\|BBH40291.1\|3036515_3036773_-\|plasmid-stabilization-system-protein-like	unknown	unknown	gnl\|CDD\|224937
AP019314.1\|BBH40293.1\|3037204_3037654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379816
AP019314.1\|BBH40301.1\|3047541_3047790_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40296.1\|3038799_3039132_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40294.1\|3038053_3038389_-\|FdxN-element-excision-controlling-factor-protein-like	unknown	unknown	gnl\|CDD\|341357
AP019314.1\|BBH40308.1\|3054314_3055061_-\|transposase	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH40298.1\|3044529_3044907_-\|plastocyanin	gnl\|CDD\|235060	PRK02710, PRK02710, plastocyanin; Provisional.	4.02235e-69
AP019314.1\|BBH40297.1\|3042453_3044181_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
AP019314.1\|BBH40295.1\|3038546_3038792_-\|hypothetical-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	2.9023e-15
AP019314.1\|BBH40299.1\|3045099_3045420_+\|cytochrome-c553	gnl\|CDD\|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	2.05842e-46
AP019314.1\|BBH40300.1\|3045536_3047216_+\|hypothetical-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	5.63712e-178
AP019314.1\|BBH40304.1\|3050029_3050611_+\|hypothetical-protein	gnl\|CDD\|315619	pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR.	3.70885e-33
AP019314.1\|BBH40306.1\|3051696_3052500_-\|cobyric-acid-synthase-like	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.89924e-121
AP019314.1\|BBH40289.1\|3036047_3036275_-\|hypothetical-protein	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	0.000165105
AP019314.1\|BBH40291.1\|3036515_3036773_-\|plasmid-stabilization-system-protein-like	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.74051e-15
AP019314.1\|BBH40293.1\|3037204_3037654_-\|hypothetical-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	0.00124811
AP019314.1\|BBH40307.1\|3052697_3054035_-\|UDP-N-acetylmuramyl-tripeptide-synthetase-like	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	4.93761e-90
AP019314.1\|BBH40294.1\|3038053_3038389_-\|FdxN-element-excision-controlling-factor-protein-like	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	3.51688e-54
AP019314.1\|BBH40308.1\|3054314_3055061_-\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.98571e-20

>AP019314.1|BBH40298.1|3044529_3044907_-|plastocyanin
MKKLGLLVATLVLVVSSFFFNTAAASAETFTVKMGGDAGTLQFDPPALTIKAGDTVKWVNNKLSPHNIVFDSTKVPEAQASKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ
>AP019314.1|BBH40297.1|3042453_3044181_-|succinate-dehydrogenase-flavoprotein-subunit
MKEHDVVIVGGGLAGCRAALEIKRLNPTIDVAVVAKTHPIRSHSVAAQGGIAAALQNVDPKDNPKAHAYDTVKGSDFLADQDAVDILTKEAPEVIIELEHLGVLFSRLEDGRIAQRAFGGHSHNRACYAADKTGHAMLHELVSNLGRNQVKIYDEWYVLRLILEEGTAKGVVMYQIATGQLEILRAKAIMFGTGGYGRVYNTTSNDFACTGDGLALSAKAGIPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGRRFMEDYAPSRMELAPRDITSRAITLEIRAGRGVNLDGSAGGPFVYLDLRHLGREKIMSRIPFCWEEAHRLVGVDAVEEPMPVRPTVHYCMGGIPVNTDGRVRLSADTLSEGFFSAGECSCVSVHGANRLGSNSLLECVVYGRRTGKSIAKYVEKRAFPVFNPDIYLQDAKEEITALLTKKGTIRIGQLRQQFQDCMTQHCGVFRTEATMREGIKQIGELKRQYEQIYLDDRGDCWNTELIEAWELQSLMVVGEIILTSALNRQESRGAHSREDFPQRDDQNFLQHTLAYYSPSGIDIDYMPVVIQDFTPVERKY
>AP019314.1|BBH40296.1|3038799_3039132_-|hypothetical-protein
MKLPNADQANLGDKLERYCLNPEHSKGKHKALLFKQRLGITLANKEILENALKKAVMEGEAELYKIDQYGTHYDLKFNLCTDIGESLILSCWIVQITENFPRLTNVYPIN
>AP019314.1|BBH40295.1|3038546_3038792_-|hypothetical-protein
MMNTIQEYDLVALTEDVTATHKTTHQPILLRRGQMGTVLMSFNQQAFLIDFTDQNGQTFAMETVDHSKLLRLISEPELVSV
>AP019314.1|BBH40294.1|3038053_3038389_-|FdxN-element-excision-controlling-factor-protein-like
MDKLNHYRKIIHQILVPYSQIIYNNADIQNRLAFDPQNDQYLVISEGWQQNQRYHDCLIHLEIINDKIWVQCDNTEDGITKELLSAGIAKEDIVLGFHEPKIRQYTGFAVA
>AP019314.1|BBH40293.1|3037204_3037654_-|hypothetical-protein
MQTVQLFQQVKLCRDVPDTIFKKGDQGTIVEYLPPKEQQSEAGYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSCYRVIVLSVIS
>AP019314.1|BBH40292.1|3036779_3037013_-|hypothetical-protein
MSTTINLQITFESLTEAIKSLDLTQKQQLLEILEQQIFQAEETSYQDDEETLAELQQVRDEYQSGDYVTLEQYLSKD
>AP019314.1|BBH40291.1|3036515_3036773_-|plasmid-stabilization-system-protein-like
MDYSIKISKSVQKQIDNLPNPIKSRILEKIKDLSVEPRPPGVVKLKNSDYEYRLRVGDYRVRYEIDDPKQVILILQCKHRRDVYR
>AP019314.1|BBH40290.1|3036319_3036529_-|unknown-protein
MSIANNLETLRYFKSELVFLAEIAHKTNRPQLALSHCQQALKLCQELGIPLVKYCEELLGQIQATLENN
>AP019314.1|BBH40289.1|3036047_3036275_-|hypothetical-protein
MIKLTLNEAQSQLPDLLKAASKGEQVIIQNHEGQDFQLISLPTTVKHPQYGSAKGIVKMLDNFDDPIEEFEEYMP
>AP019314.1|BBH40299.1|3045099_3045420_+|cytochrome-c553
MKRLLISLCLLLAVVTFGMARPALADGASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMPAFGGRLSAEDIEAVANYVLAQAEKGW
>AP019314.1|BBH40300.1|3045536_3047216_+|hypothetical-protein
MKLRSFFYILGATVIILLGVATASFAWILADSPLSLLKGGVLREPMAAIFVPKQAPVMVSLLVNPERLESFGQLIATPANRRRSHQQIKDLEKSLLGKTGLNYQKEIKPWLGEEITLAVTSLDFDRDTDNGIQPGYLLAIQSKDGERAKEFLQASYSKQAVSGKFDLVFELYKGVNLIYQRPLTAGDNNRFLASAVVGDTVLFANNIKVLREALNNVQVPDLNLKNSPDYREALKNITEPRIAIVYGNLPPLSAWIANQPVPESPEAKQRLATAFTLKSGGIVAQTALIGVLGQDDQAPILSSPVGALSFIGENSLLVAASRDLNRFWTQVEEGLEADSPLQELITQVLNRFQSPLGLNLPEDVFSWVRGEYSLALVPSSKGMEPDSVFVGERVMGVEVDSAIEHLDELARSRGYNVVNLPLLDRTVTAWTKLTTAVPGGKAQLETLVTGVHTRVDNYEIIASSVEAMGLALSAQKNPILSSGKFRQAITALPAENDGYFYVDWRQLQPVIEAKFPIVRVLELSIKPLFNNLRSLTISSQGSENSVRRGTIFFNLGVKS
>AP019314.1|BBH40301.1|3047541_3047790_+|hypothetical-protein
MTTITIVPEFAGKTLTYKAICGNQETSGLTPGQALDLMETSLIAEGENMGETLVILQRFRPDNLFSKQQQERLQELMEEFHQ
>AP019314.1|BBH40302.1|3047757_3048051_-|hypothetical-protein
MPEFKDVFDKNVSYLVNSTSKKYELDELKKLVTMFPQFKKLAEQRIEAIRERKEREERYIEEREREEREEREERDRNRMVVKPRNNVLLMKFFHQFL
>AP019314.1|BBH40303.1|3048651_3049023_-|hypothetical-protein
MLAELAAAEIAKIAFEAVIGKLTEGAMDKGVELCKKIKQKLQKEPAAAQVLAAAEQTKSEAMIEQQVVPFLQVEMLKDTNFAQEIQTLAQQIIAFLIHKRYIPDPEQLNQQRFKCAAQMREPL
>AP019314.1|BBH40304.1|3050029_3050611_+|hypothetical-protein
MLTRFYPGGFFPLHGHPGGEEILVLEGNFADETGVHPPGTYMLNPEGFIHRPYSEEGCLTFVKLRQHGGKTRQQVRTNIFNGSWQAGIVPQIKVQHLYEQADFSEKVWIERWLPNTQLVNVVETEIKEIFVIEVTWSDELGSYPVGSWLRYPPNCPYSPSSTTGCLIYVKTYPVTDTTARFVVGDDFQHPQTI
>AP019314.1|BBH40305.1|3050699_3051620_-|hypothetical-protein
MTGKIIDRQTAGFLVLIIPLAVLIILVFTAWPLILLVFFLTLAVKVWQDYRWSKLSTVINPYFNQLLQDNQGCLTPIDLSAKANLTAKLARQFLDKKAEEFGAQKKAVGDKGMAYYFITASTLGSIFDESDPSLEEIGEKQIPAITASRFPLTNLEQSQEAKSPLIVAEKSENSVPEVPVISSSQSLTNLGKLFEEKEEENTAAISVQETVIQEPEEIINPSLNSSASSLFQSESEVREESLTSVSETISSMSLADLAKRLGVTPAVLGRNKKNKSETEFADWSRIRDPDGIAWKFDAKNSLFVAN
>AP019314.1|BBH40306.1|3051696_3052500_-|cobyric-acid-synthase-like
MQELELKIGWLYPTLMSTYGDRGNVITIQRRCQWRDIPVTIIPLDAQTEAETFYQVDIIVGGGAQDRQQEIVMRDLQGKKAAAMKEQLSAGIPGVFTCGSPQLLGHYYEPAFGQRIEGLGLLDLVSKHPGPNAKRCIGNVVFEITASPLAEEIKAMTGEKPLVIGFENHGGRTYLQTVSPLGKVITGYGNNGEDGYEGAFYHNAIATYAHGPLLPKNPFLADWLIEKALEQKYQKPIFLTKLDDSLALKARFAMFERLELTGVTNKA
>AP019314.1|BBH40307.1|3052697_3054035_-|UDP-N-acetylmuramyl-tripeptide-synthetase-like
MQLFDRIRLGIAVAVAKTVTAVVKGLRLGAASVLPGEIARRLHPRLLPLLCGQVRRGVILVVGTNGKTTTSLLLRTILERQGAKVTHNTTGANLINGLITALLADANLFGTLKADYAILEVDENILPLVLKDCRPRAILALNLFRDQLDRYGEVDTISRRWQGAISPLPTDTLVILNADDPTLSHLGQQLPQRVVYFGLSEPELYLEEIPHAVDSIYCPKCGASLDYRGVYLSHLGDFSCPSCGFKKSSPAFHSHDWPQILIGVYNKYNTLAAGLVAQELGIKDREIFETVQGFKAAFGRAEELEIEGKKVRILLSKNPVGMNETIRAVADILQKEKSSTTLLVLNDRIPDGTDVSWIWDVDTEKLTRLGTTLVVTGDRLYDMALRLQYSQDSLAYPVNLIVESELKKAIQIALNNTKNEETLHILPTYSAMLEVREILTGRKIL
>AP019314.1|BBH40308.1|3054314_3055061_-|transposase
MAYSKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN

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Crispr_ID: AP019314_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_23

3356880-3357000

Orphan

Consensus_repeat	Method
TAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_23

>merge|AP019314|23|3356880-3357000|CRISPRCasFinder
TAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAGGCTGACAGGGGGGATCAAACCCCCTCAAGGTAGGGTTGATTGTCGGTAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAGG

>AP019314|23|23|3356880-3357000|CRISPRCasFinder
TAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAGG	CTGACAGGGGGGATCAAACCCCCTCAAGGTAGGGTTGATTGTCGG
TAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAGG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH40600.1\|3368482_3368758_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212463
AP019314.1\|BBH40591.1\|3355977_3356781_-\|glutamine-amidotransferase,-class-II	unknown	unknown	gnl\|CDD\|372525
AP019314.1\|BBH40588.1\|3352987_3353887_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40586.1\|3351179_3352829_+\|transposase	unknown	unknown	gnl\|CDD\|379471
AP019314.1\|BBH40597.1\|3366182_3366866_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40589.1\|3354439_3355171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
AP019314.1\|BBH40587.1\|3352825_3352957_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40594.1\|3362596_3363637_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
AP019314.1\|BBH40601.1\|3369095_3370268_+\|probable-glycosyl-transferase	unknown	unknown	gnl\|CDD\|133022
AP019314.1\|BBH40590.1\|3355246_3355975_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224058
AP019314.1\|BBH40598.1\|3367367_3367580_+\|CAB/ELIP/HLIP-superfamily-protein	unknown	unknown	gnl\|CDD\|177653
AP019314.1\|BBH40593.1\|3361023_3361884_-\|transposase	unknown	unknown	gnl\|CDD\|227720
AP019314.1\|BBH40584.1\|3349136_3349382_+\|photosystem-subunit-VII	unknown	unknown	gnl\|CDD\|177005
AP019314.1\|BBH40599.1\|3367638_3368484_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|178151
AP019314.1\|BBH40592.1\|3357653_3358166_+\|transposase	unknown	unknown	gnl\|CDD\|369439
AP019314.1\|BBH40583.1\|3346914_3348885_-\|acetyl-coenzyme-A-synthetase	unknown	unknown	gnl\|CDD\|234677
AP019314.1\|BBH40595.1\|3363666_3364296_-\|imidazoleglycerol-phosphate-dehydratase-(EC-4.2.1.19)	unknown	unknown	gnl\|CDD\|234873
AP019314.1\|BBH40585.1\|3349909_3351001_-\|transposase	unknown	unknown	gnl\|CDD\|379382
AP019314.1\|BBH40596.1\|3364502_3366017_-\|unknown-protein	unknown	unknown	gnl\|CDD\|237864
AP019314.1\|BBH40582.1\|3346011_3346545_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227278

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH40600.1\|3368482_3368758_+\|hypothetical-protein	gnl\|CDD\|212463	cd01716, Hfq, bacterial Hfq-like. Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotropic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.	1.45767e-07
AP019314.1\|BBH40591.1\|3355977_3356781_-\|glutamine-amidotransferase,-class-II	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.01359e-150
AP019314.1\|BBH40583.1\|3346914_3348885_-\|acetyl-coenzyme-A-synthetase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
AP019314.1\|BBH40586.1\|3351179_3352829_+\|transposase	gnl\|CDD\|379471	pfam14104, DUF4277, Domain of unknown function (DUF4277). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 110 amino acids in length. There is a conserved NGLGF sequence motif.	9.77193e-54
AP019314.1\|BBH40589.1\|3354439_3355171_-\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.73978e-13
AP019314.1\|BBH40596.1\|3364502_3366017_-\|unknown-protein	gnl\|CDD\|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	3.57986e-07
AP019314.1\|BBH40594.1\|3362596_3363637_+\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
AP019314.1\|BBH40601.1\|3369095_3370268_+\|probable-glycosyl-transferase	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.27254e-48
AP019314.1\|BBH40590.1\|3355246_3355975_+\|hypothetical-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	4.49528e-66
AP019314.1\|BBH40598.1\|3367367_3367580_+\|CAB/ELIP/HLIP-superfamily-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	3.71017e-05
AP019314.1\|BBH40593.1\|3361023_3361884_-\|transposase	gnl\|CDD\|227720	COG5433, COG5433, Transposase [DNA replication, recombination, and repair].	4.0213e-05
AP019314.1\|BBH40584.1\|3349136_3349382_+\|photosystem-subunit-VII	gnl\|CDD\|177005	CHL00065, psaC, photosystem I subunit VII.	2.22262e-53
AP019314.1\|BBH40599.1\|3367638_3368484_-\|diaminopimelate-epimerase	gnl\|CDD\|178151	PLN02536, PLN02536, diaminopimelate epimerase.	7.80621e-150
AP019314.1\|BBH40592.1\|3357653_3358166_+\|transposase	gnl\|CDD\|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	4.47672e-08
AP019314.1\|BBH40595.1\|3363666_3364296_-\|imidazoleglycerol-phosphate-dehydratase-(EC-4.2.1.19)	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	2.61898e-129
AP019314.1\|BBH40585.1\|3349909_3351001_-\|transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	2.13455e-24
AP019314.1\|BBH40582.1\|3346011_3346545_-\|hypothetical-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.35363e-06

>AP019314.1|BBH40591.1|3355977_3356781_-|glutamine-amidotransferase,-class-II
MLASDIQTQATMCQLLGMNCNVPTDICFSFEGFCARGGKTDEHRDGWGIAFFEGLGCRTFIDVKPSIASPIAELIKNYPIHSTNVIAHIRKATQGEIKLENCHPFRRELWGKYWVFAHNGNLENFSPAAGDFYQPVGETDSEKAFCLILNTLRETFPQGKPSLEQLYQVLKTITNSIACQGIFNYLLSDGEHFFAHCSTKLSYIIRQYPFAAAHLIDEDVSVDFQALARPGDQVAIIATTPLTDNEVWTAINSGELLVFQEGAAILS
>AP019314.1|BBH40590.1|3355246_3355975_+|hypothetical-protein
MILELQQVNLAIRRGSAYLLEDITFSIKQGEKLAIVGASGAGKTTLLRLLNRLQEPSTGNIYFQGKSIKEIPVISLRQQIVLLLQESKLLGMTVRDALAYPLQLKKLNPAEINQRIDHWTSLLKIPQQWFERGELELSLGQRQLVAITRALLLEPSILLLDEPTSALDTGTATRLLEVLNNQRSMTIIMVNHQLDFLEEFAERVIYLEAGKIGSDCLAHQLDWLGLKTQLIDLEKSRQSDHW
>AP019314.1|BBH40589.1|3354439_3355171_-|hypothetical-protein
MVSQVNKTEIIYPESDGKPMADNTKQFHWIVTIKQNIDWLYIDDPQVFVAGDLLWYPVEGQPKIAAAPDTMVVFGRPKGDRGSYKQWQEDNLAPQVVFEILSPNNTSIEMAKKLLFYDRYGVQEYYVYDPDDNSLEAWQRIGDSLDSVSEVNNWVSPRLGIRFDLTDELKIYRPDGTQFSSYSEINQLLEQEKQRAENERQRAENERQRAENERQRAEQVNQQLVEMEAKLQKYRQLFGELPN
>AP019314.1|BBH40588.1|3352987_3353887_+|hypothetical-protein
MVTKTTGTQAGRPRKIKSIIGELCLTEKQAIRLNIPRNNQISPYLERCCLRASANVSYENAARDIQFYIGMKVSARTQQRLVHRHQFAEEESGNPVQEISLDGGKVRLRTETKGEACIWKDYQAICVDTFLRKAWFGENESLIYWVNQQPLSDPLTCLGDGHPGIGKIVKNWDCPGEKREILDWFHLVENLHKVGGSVKRLKKAESLLWQGKIEETIALISPLKNERAENFCRYLEIHRHRIVNYNYYQQEEICSIASGAVESTVKQIDRRLKISGAQWNEENIPQVLKHRCAYLNNSL
>AP019314.1|BBH40587.1|3352825_3352957_+|hypothetical-protein
MTPEQQQELNQHIQAIAKILHQEAEAEKIQTLEGIETTIREQT
>AP019314.1|BBH40586.1|3351179_3352829_+|transposase
MNQSTEIEVKNLDHLGLVAGIIDEIGIVEIINEQVSIERGEIVTAGQVVKAIILNGLGFVSRALYLFPQFFEDKATEHLLGEGIEAKHLNDDKIGRVMDKLYQLNVSVIFLLISLAAVKKFGVATENSHLDSTSLSVEGEYKKEYPTVEILKSGAVGEEIETRQQPIKITYGYSRDRRPDLKQFMIDLIVSGDGDVPLFLKVGDGNEADKAVFGQIAREFKKQVDFDSLIVGDSALYSKENLKLMKEMRWLSRVPLSIKEAQELVDSISEKELTDSEIPGYSWRETSSNYGGIEQRWLLVESQARQESDLKKLEKKIEQEKNSAQEKIRQLSRREFENRAVALAIAKGLSDSLKSHQLTEIKVNLIPPESQGSKLKSKDDLPSQSYQVQAKLELNLTAIERLKKRAGRFVLATNDLEKQRLSSEDILKKYKGQQAPERGFSFLKDPCFFADSVFLKSPHRIEVMAMLMGLCLLVYTIGQRQLRLSLKQQETGLKNPLGKLTDRPTLRWIFQGFQGIHLGEQVKAEEQINYLTKASIGYGIEKRVGKRQK
>AP019314.1|BBH40585.1|3349909_3351001_-|transposase
MLSLIEKLKQVKDFRKDKGKRHPLWIVLVVIILGTMLGYSGYRELGEFAKNNRHRLSQEFNIIPERVPSYSTIRRVMMGVEWQILLKMFNEWALQEYGQRDDINWLDIDGKSLKNTLKNPNNEQQNFIMFISLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCTLQNKVFTGDALHCQKKTISLITKSKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRIIKVERRGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>AP019314.1|BBH40584.1|3349136_3349382_+|photosystem-subunit-VII
MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAAQIASSPRTEDCIGCKRCETACPTDFLSIRVYLGAETTRSMGLAY
>AP019314.1|BBH40583.1|3346914_3348885_-|acetyl-coenzyme-A-synthetase
MTEIAIESILQENRLFPPSAEFAQNATIKSFEEYQQLYAKAKADPSAFWAQLAEKELHWFEKWSEILDWQPPFAKWFVNGKINICYNCIDRHLTTWRRNKAAIIWEGEPGDSRTITYEQLHREVCQFANALKELGVKKGDVVGIYMPMIPEAAIAMLACARIGAPHSVVFGGFSADALRDRLNDAAAKVVITADGGFRKDKVVALKEQVDLALADNSAPSVEKVLVVQRSKEPINMVADRDYWWHDLQKQVSANCPAEPMDSEDMLFILYTSGSTGKPKGVVHTTGGYNLYTHVTCKWIFDLKDTDVYWCTADVGWITGHSYIVYGPLSNGATTVMYEGVPRPSNLGCFWDVIEKYRVNIFYTAPTAIRAFIKMGEDIPNSRDLSSLRLLGTVGEPINPEAWMWYHRVIGKEKCPIVDTWWQTETGGIMITPLPGAIATKPGSATLPFPGIIAEVVDLEGNPTHANEGGYLVVKHPWPGMMRTVYKNPDRFRNTYWEHIAPKDGQYLYFAGDGSRQDEDGYFWVMGRVDDVMSVSGHRLGTMEIESALVSHPAVAEAAVVGRPDEIKGEEVYAFVTLEGHYEASPELAQALKDHVVKEIGIIARPGEIRFTDVLPKTRSGKIMRRLLRTLASGQEISGDTSTLEDRSVLDKLRQGA
>AP019314.1|BBH40582.1|3346011_3346545_-|hypothetical-protein
MTTTTTTNNDLKRLEDLILNGQKIIEHRFNEIDNRLTTMDNRLTTMDNRLTTMETRLIDVDNRLATVDNRLTTMDNRLTTVETRLIEVDNRLKVIENGQAEMKADVKNLQKDTTDLKIELTEVKGDIKTLDSKFDDMNKRLEKVEGTQKNQIWTLITVLSGSLLAVGFRSFFIDNNP
>AP019314.1|BBH40592.1|3357653_3358166_+|transposase
MELTDSLKKLLSETALQLKGAAKRRFMAQTVLELGYGGQTLAAQELGWNRTTIRKGIKELKRGIICVDNHSAKGRKKAEEHLPFLLENIKSLVDSQSQTDPSFKSQRLYVRLSAAEVRKQLISKYGYSDEDLPSEETIRVKLNNLGYRLKRVAKVLPQKKFQKPRQSLRN
>AP019314.1|BBH40593.1|3361023_3361884_-|transposase
MGVEWQILLKIFKEWALQEYGQRSDINWLGIDGKSLKNTLKNPNNEQQNFIMFVSLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCSLQNKVFTGDALHCQKKTISLIAKSKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRIIKVERRGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>AP019314.1|BBH40594.1|3362596_3363637_+|threonine-synthase
MIEEYRQFLPVSSKTPVITLLEGNTPLIPAPYLSAQIGRDVKVFVKYDGLNPTGSFKDRGMTMAISKAKEEGAKAVICASTGNTSAAAAAYARRAGMRAFVIIPDGYVALGKLAQALLYGAEVIAINGNFDDALKIVRQLSENYPVTLVNSVNPYRLEGQKTAAFEIVDVLGNAPDWLCIPVGNAGNISAYWMGFCQYHQIGKCDRLPKMIGFQAAGAAPFISKQPVDHPETLATAIRIGNPANWEKAWAASHASQGQFHAVSDEEILAAYRILGGQEGVFCEPASAASVAGLLKVHQQVPDGATVVCVLTGNGLKDPDSAVKYSNNQLKSGIAPELTQVAQIMGF
>AP019314.1|BBH40595.1|3363666_3364296_-|imidazoleglycerol-phosphate-dehydratase-(EC-4.2.1.19)
MISTSQIPDSFVSPCRRASVSRTTKETDVQVTIDLDGSGNCRAQTGIPFLDHMLQQIASHAAIDLDVRATGDIEIDDHHTNEDVGITLGQALLQALGDKKGIVRFGHFVAPLDEALVQVALDFSGRPHLSYGLEIPTQRVGTYDTQLVREFFVALVNHSQMTLHIRQLDGINSHHIIEATFKAFARAMSMAIAIDPRRAGIIPSSKGVL
>AP019314.1|BBH40596.1|3364502_3366017_-|unknown-protein
MTSSYFGLETEENKLINSNNLSFAASLGIHGLILAIILPNFLNNPAQEPKKDLRNVNLIELNSLEQSRLPSLDSSLSSLPELPNPNLSSSSLPPLPPMDGIHNSTLPPLPSVSSLPPLPSLPALPPLSSLPSVNIYSPPVASIPSLGRLPIPRNFPTSTPSLPSPPAVPTLPDNDNLPRETNNNRIPPYFDPYQDNLTLDRLRNSPLSASQQAQQQLNNSLARTPEPNGQSPLDEQRRQQLMWEMRERLRSLEADKSNTSNEEAMRNNLAWLARVQKTNPNALNELNQPNQGSRGITTVNLTGNYPATACSRQLAGTAVYGVTVDAQGRLSSEPQLIKSAGFPIFNQQAAREVSLTRFNNPSGASRSYHVRVSFAPNPEVCRGAIANPPKPEGSNLNTRNSPPVTPAIETPLRPNQPPQPAVSPQPDNVKPPETTGPNPPQTQPEPPKEAIIEQKAPETPPQTPALNQPEGSPASPPTSQNPQPLSEEALPPGPPAEAKTEPES
>AP019314.1|BBH40597.1|3366182_3366866_-|hypothetical-protein
MAEISPEINLMQIATILNQYRFEMRGYKAQELIERWLPIYSLNWIRMAILEALYQGRYKVISVEEILKIWHRRGHPTFHFTGEFERLVCKNLLDSQLDGKKPAVIPKREQINIPSPTLEQPCPEPEAGKTDNNGTVATSKDSLLNLETSLFNDPRKGMSNVEELFSQLTPETPKFPELESVPKSPNSPGTRENFPANFKPAIDEFIPLLDPSELYPKLKAVARSPHK
>AP019314.1|BBH40598.1|3367367_3367580_+|CAB/ELIP/HLIP-superfamily-protein
MTARGYTTEEQGRLNNFAVEPKMYVDSSSSLGFTKNAEKLNGRLAMIGFVSLLAIELLTGKGIIAWITSL
>AP019314.1|BBH40599.1|3367638_3368484_-|diaminopimelate-epimerase
MKIPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAATDYTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLVTCVSMGNPHCVTFVGDLASIPLETIGPKFEHHPVFPQRTNVEFVEVVAPDYMKMRVWERGAGITLACGTGACAVVVAALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI
>AP019314.1|BBH40600.1|3368482_3368758_+|hypothetical-protein
MVNKSCSTGIIEDEHLIDKLIMSQFDPGLPSIKQVQSYIQEKREVEIKLSTDDLLVGRILWQDVNCLYLVDHYDKPTLIWQQSLVYLRPKA
>AP019314.1|BBH40601.1|3369095_3370268_+|probable-glycosyl-transferase
MLENQVMADAASNEQIPTLELSIIMPCLNEAETLATCIGKARDYLEQHKIAGEVLIADNGSSDGSQEIATNSGARVVPIPERGYGSALRGGIAAAKGQYIIMGDADDSYDFTNLSPFLEKLRQGYDLVMGNRFQGGIQPGAMPVLHKYLGNPVLTWLGRLFFGSPCGDFHCGLRGFSKQAIEQLNLRTTGMEFASEMVVKASLYGLKITEVPTTLSPDGRSRPPHLKTWRDGWRHLRFLLMYSPRWLFLYPGLALMFLGFVATIWFVPQPRVHTLLYSATALIIGFQIVSFAVFTKAFAISEGLLPEDRKLRRFFRYLNLEVGLIIGGGLILLGIGGSIYAFQTWEARQFGTLDPAVTMRLVIPSVTCLALGIQVIFSSFFLSVLQLKRG

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Crispr_ID: AP019314_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_26

3586548-3586653

Orphan

Consensus_repeat	Method
CCCACTTCCCTACACCCCACACCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_26

>merge|AP019314|26|3586548-3586653|CRISPRCasFinder
CCCACTTCCCTACTTCCCACTTCCCTACACCCCACACCCCACCCCCACACCCCACTCCCCACCCCCACCCCACTACCCCCCCACTACCCTACACCCCACACCCCAC

>AP019314|26|26|3586548-3586653|CRISPRCasFinder
CCCACTTCCCTACTTCCCACTTCCCTA	CACCCCACACCCCACCCCCACACCCCACTCCCCACCCCCACCCCACTACCCC
CCCACTACCCTACACCCCACACCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH40747.1\|3580224_3580485_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH40754.1\|3586705_3587383_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
AP019314.1\|BBH40750.1\|3582753_3583338_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379811
AP019314.1\|BBH40760.1\|3592195_3592462_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373040
AP019314.1\|BBH40751.1\|3583646_3584804_+\|chromate-transport-protein	unknown	unknown	gnl\|CDD\|273350
AP019314.1\|BBH40753.1\|3585690_3586440_-\|HAD-superfamily-hydrolase-subfamily-IA,-variant-3	unknown	unknown	gnl\|CDD\|223620
AP019314.1\|BBH40746.1\|3579811_3580219_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225266
AP019314.1\|BBH40763.1\|3594243_3595140_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274737
AP019314.1\|BBH40749.1\|3582133_3582664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379811
AP019314.1\|BBH40745.1\|3579052_3579412_-\|integrins-alpha-chain-like	unknown	unknown	gnl\|CDD\|372982
AP019314.1\|BBH40756.1\|3590153_3590486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371230
AP019314.1\|BBH40744.1\|3577014_3578001_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40755.1\|3587542_3590152_+\|aconitate-hydratase	unknown	unknown	gnl\|CDD\|236424
AP019314.1\|BBH40758.1\|3591395_3591572_+\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH40762.1\|3593723_3593945_+\|XisI-protein-like	unknown	unknown	gnl\|CDD\|370165
AP019314.1\|BBH40761.1\|3592593_3593559_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40752.1\|3584839_3585490_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234971
AP019314.1\|BBH40759.1\|3591954_3592248_+\|protein-of-unknown-function-DUF497	unknown	unknown	gnl\|CDD\|367913
AP019314.1\|BBH40757.1\|3590492_3591323_+\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH40748.1\|3580872_3581883_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH40754.1\|3586705_3587383_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.94093e-113
AP019314.1\|BBH40750.1\|3582753_3583338_-\|hypothetical-protein	gnl\|CDD\|379811	pfam16261, DUF4915, Domain of unknown function (DUF4915). This family consists of uncharacterized proteins around 370 residues in length and is mainly found in various species, such as Shewanella, Rheinheimera, Saccharophagus, Leptolyngbya and so on. It contains serveral TPR repeat-containing proteins. The function of this family is unknown.	9.46315e-74
AP019314.1\|BBH40760.1\|3592195_3592462_+\|hypothetical-protein	gnl\|CDD\|373040	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system. BrnA is family of antitoxins that neutralizes the toxin BrnT, pfam04365. It consists of 3 alpha-helices and a C-terminal ribbon-helix-helix DNA binding domain. As in other toxin-antitoxin systems, BrnA negatively autoregulates the brnTA operon and has higher affinity for the DNA operator when complexed with BrnT. It dimerizes with two molecules of its toxin BrnT.	3.46923e-05
AP019314.1\|BBH40751.1\|3583646_3584804_+\|chromate-transport-protein	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	5.92066e-77
AP019314.1\|BBH40753.1\|3585690_3586440_-\|HAD-superfamily-hydrolase-subfamily-IA,-variant-3	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	3.32185e-28
AP019314.1\|BBH40746.1\|3579811_3580219_-\|hypothetical-protein	gnl\|CDD\|225266	COG2402, COG2402, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	4.65491e-14
AP019314.1\|BBH40763.1\|3594243_3595140_+\|hypothetical-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	5.69018e-165
AP019314.1\|BBH40749.1\|3582133_3582664_-\|hypothetical-protein	gnl\|CDD\|379811	pfam16261, DUF4915, Domain of unknown function (DUF4915). This family consists of uncharacterized proteins around 370 residues in length and is mainly found in various species, such as Shewanella, Rheinheimera, Saccharophagus, Leptolyngbya and so on. It contains serveral TPR repeat-containing proteins. The function of this family is unknown.	2.79136e-85
AP019314.1\|BBH40745.1\|3579052_3579412_-\|integrins-alpha-chain-like	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	4.6018e-15
AP019314.1\|BBH40756.1\|3590153_3590486_+\|hypothetical-protein	gnl\|CDD\|371230	pfam10763, DUF2584, Protein of unknown function (DUF2584). This bacterial family of proteins have no known function.	1.06989e-28
AP019314.1\|BBH40755.1\|3587542_3590152_+\|aconitate-hydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
AP019314.1\|BBH40762.1\|3593723_3593945_+\|XisI-protein-like	gnl\|CDD\|370165	pfam08869, XisI, XisI protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	1.68891e-25
AP019314.1\|BBH40752.1\|3584839_3585490_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	5.73196e-123
AP019314.1\|BBH40759.1\|3591954_3592248_+\|protein-of-unknown-function-DUF497	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	1.29078e-26

>AP019314.1|BBH40753.1|3585690_3586440_-|HAD-superfamily-hydrolase-subfamily-IA,-variant-3
MSIIRCGNREFRDIQGIVFDKDGTLEDSRAFWYDRAIARIQAIESRIPGLESLLTKTFGIGANSLNPAGLMAVGSRRDNHIAAAGCIASTGRDWLTAIAIAKAAFQAADEKVPPRLNPLYPQCLEVIRYLHAAGLQLAILSSDTTARVEQFVKENHLLNYIKIARGCDRGLSKPDPLLLQETCQALGTPVDKTLMVGDTRADWEMAKQAKSAAAIAISWQPETHQDLQLADVVIRELTAISVISYDFSC
>AP019314.1|BBH40752.1|3584839_3585490_-|ATP-phosphoribosyltransferase
MLTIALPKGALLNESIQIFQKIGLDFSAFLDSKNRQLQITDPTNQAKALLVRATDVPVYVEYGQAQLGIAGYDVLLEKSPDVANLIDLKFGYCRMSVAVPADSPYQSPLDIPHHGKVASKFVNCAKDYFRRLDIPVEIIPLYGSVELGPITGMSEAIVDLVSTGRTLRENGLVEIDELFASSARLIAHPLSYRLDRDQIYNWVEKLREPTTSMAKV
>AP019314.1|BBH40751.1|3583646_3584804_+|chromate-transport-protein
MLTSSPPNLSQLALLFLKIGIIGFGGPAAHIALMEEEVVKRRGWMTKERFLDLVGATNLIPGPNSTEMAIHIGYIFGGLAGLIITGVCFITPAVLITGFLAWIYTTYGTLPDVAPIFAGIKPVVIAVIFQALWRLGKKALKTRQLLFIGLGVIGLLILGLNEVIALLLGGIIGMFILKKFATFPLIVAGIGGATAVATPSNIPPTLTGLGLFFLKVGSVLFGSGYVLVAFLEGDLVQGKGWLTQQQLLDAIAVGQFTPGPVLSTATFIGYQILGVSGAIVATLAIFFPSFIFVLLLNPLIPKLRESVWAGAFLDAINASAVALMVAVIFNLALATWLQPYGNLPFNLLAIILSLISAILLLRFQVNSTWLILAGALIGLLLKQLG
>AP019314.1|BBH40750.1|3582753_3583338_-|hypothetical-protein
MDSLPPKTNQFSDTQEPAASPSQRQAVPVNYEYSLNLPELLNQFDLSVLISTYQAGRVASIGTYQGQMRVSFAHFDQAMGLTRTATGIAVGARQAIWNLPANREIAPQIKPEGEQDIAFLARSSHLTGPIMGHDLAFGSNRLWVVNTLFNCLATIEGNWSFLPQWKPPFITELVPGDRCHLNGLAMAENSGTPA
>AP019314.1|BBH40749.1|3582133_3582664_-|hypothetical-protein
MTALGETNQESLWRENKAQGGCLIDVARGEVILRGLAMPHSPRLYQGNLYFLNSGYGTLNRWHPQTGSTEIIAELPGFTRGLDCWEGHAFVGLSQVRETAVFGGLPLDERRNQLRCGLAIVNLATSQLVATFWFNSGVEEVFAVSVLPGYRNPALIGPDTDLDGTQSVWMVPSLIV
>AP019314.1|BBH40748.1|3580872_3581883_-|hypothetical-protein
MKQPTANYDEPWKEALSEYFEAFLHFFFPEVYQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEESWSELETSSNPFAIIVMAHLKTKATTGKLPQREQWKWRLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLMSNMELRGIERGKEIGKEIGKEIGELRGIERGKEIGALENARNYVKTVLKTRLGDIPIEIEQAVDKISVLSILDELLKSALTVNSFDELHQLLEQ
>AP019314.1|BBH40747.1|3580224_3580485_-|unknown-protein
MTQILIEIPDELISRLQEQKSSVQEIVIKALENYVQAELPDITKTRTWELCGSLEIVQPEPKYIIGQDNRGQVVTNYAENIDEIIY
>AP019314.1|BBH40746.1|3579811_3580219_-|hypothetical-protein
MDKEIIVDTSALIAFFVKSETHHESAQKYYLENPHNNWIILESVFDETVTWIRSKVSSRASIQVGQILREDHRYINVSDSDDLAIWEAFCKYNDKKWSYTDCSILVMAHRLQIFKVFAFDDHIRQMAGLGIVCVP
>AP019314.1|BBH40745.1|3579052_3579412_-|integrins-alpha-chain-like
MTSTLLPGFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTAPELNTVVFLDAGVTDYQTLQAGVIPEVATVILSPNQDGIEQISAFLPQNPQITTTTSIIKSVRYAIALHSLRVSKQLK
>AP019314.1|BBH40744.1|3577014_3578001_-|hypothetical-protein
MNPTTANYDEPWKEALTEYFEAFLHFFFPEVYQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEESWSELEASSNPFAIIVMAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLMSNMELRGIERGKEIGKEIGKEIGKEIGALENARNYVKTVLKTRLGDIPIEIEQAVDKISVLSILDELLKSALTVNSFDELHQLLEQ
>AP019314.1|BBH40754.1|3586705_3587383_-|deoxyribose-phosphate-aldolase
MAITDSDLDLAQYIDHSLLIPTATSEQLEAYCQQAEQYRFPTVCVYPAAVKQAVQLLHGKKTLVSTVIGFPAGATTSAVKRYEALEAVDNGAKELDVVINLGWLKDGKSEQLFQEIASICQETGQTVKAILETSQLTDTEKRLAAEICMDAGVSYLKTSTGWFGGATVSDVKFLKEISKGRVGIKASGGIRTLEQAIALIRAGATRLGTSRGVDLVRQQKAAFEE
>AP019314.1|BBH40755.1|3587542_3590152_+|aconitate-hydratase
MLEAYHQHVADRAKLGIPPLPLNAQQTAELCEMLKNPSEELKGELLTLLRDRVPPGVDEAAYVKAGFLTGIAKGEIKSSVISAQGAVSLLGTMVGGYNVHSLIELLKSRDINIAAAAASALSKTLLVFDAFNEVLELSDTNPYAKQVIDAWANGAWFIAKPKLAKEITVTVFKVPGETNTDDLSPAPHATTRPDIPLHALVMLETRQPGSLETIAELKKLGHPVAYVGDVVGTGSSRKSAINSVLWHIGDDIPFVPNKRAGGYILGSKIAPIFFNTAEDSGALPLECDVSQMNTGDVIKIYPYEGKITNEAGATISTFSLKPETILDEVRAGGRIPLLIGRSLTDKTRHALGLEASTLFTRPTMPSDTGKGYTLAQKMVGKACGLPGVRPGTSCDPIMTTVGSQDTTGPMTRDELKELACLGFSADLVMQSFCHTAAYPKPVDIQTHHQLPDFFSTRGGVALRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPLGISFPAGSGLVAFAAALGVMPLDMPESVLVRFTGELQPGVTLRDIVNAIPYVAIQEGKLTVEKQNKKNVFNGRIMEMEGLPDLKLEQAFELTDATAERSCAGCTIKLSTETVAEYLRSNVALLKNMAARGYSDAKTILRRVAKMEQWLANPVLMEADKDAEYADIITVNLNEIKEPIVAAPNDPDNIKLMSECAGDKIDEVFIGSCMTNIGHYRAAAKILEGAGVAKAKLWICPPTRMDEKQLRDEGMYGIFAASGARTEMPGCSLCMGNQARVEDRATVFSTSTRNFNNRMGKDARVYLGSAELAAVCALLGRIPTVEEYLAIVTEKINPFASDLYRYLNFNEIAGFEDEGRVIPLEDLPKIEDILGIPSGVLS
>AP019314.1|BBH40756.1|3590153_3590486_+|hypothetical-protein
MKLRVSYEKLTFCSENKEVKFMGMPCEVNSILKLKPSQGYPESLELSKQYQGSKEDYRIIPVDVPIPLVNEHWVAYADVIIEKLVWENRQTTVLFRIDRIYPVPFIVKET
>AP019314.1|BBH40757.1|3590492_3591323_+|unknown-protein
MKDQQRIIIARIIKYEFDYFLRKFKPWEKLIFLLYLIVAIVTGLGDASSFFTGENSPIPREWKLLKSPQIVTIISIIILGIPVLLSQTQTGQDTVELLETIRLNIVPAISSFLEELSVNIKQKFNLKGNIRVSLWIPVRQKLFTWNLQMVCKTSNVSDRELEALFELDEGVIGYTYLKTKRKYALEFIDISNSQQLPSSYVPLQRDNELLINPHIKIVLAVAALQKSSILGLLAVDTDDSADLSSMNDRNLHSSILDWMTQYNNVVKLLWRMKNNV
>AP019314.1|BBH40758.1|3591395_3591572_+|unknown-protein
MSESLKQQRQAPSLKLIEILEDGSAKTFIYEDPEKKSKSSFIARIKAKIQQKFRPSAN
>AP019314.1|BBH40759.1|3591954_3592248_+|protein-of-unknown-function-DUF497
MKFEWDRQKNRANIIKHDLDFADAQRIFEHPIRVSLDERENYGEDRLIGIGTLDGRVVVVVFTEPSRDTIRIISLRKALPYERKRYEQYLRDELGES
>AP019314.1|BBH40760.1|3592195_3592462_+|hypothetical-protein
MNENDMNNTSETNWEKVDALTEEEIDTSDIPPLTEEFFSKSRWWKPVEKVNVLVQVDPETLAWFQSQGEDCEQKMSAALRIYAEAHKV
>AP019314.1|BBH40761.1|3592593_3593559_+|hypothetical-protein
MIIDVPTGDDFKSAGIDFLNLAWDTLISLSTKLKDAEYFYNVYYSDENEEVIDQLSSEQYWKQAQRPLSTALSLIQQGTEFLLKGHIATVSPYLLISGDPSNYPSKSHERNIRFSEFKTIDAQDLVKVYNTVSTDRLPDNFRQRFEDLRSKRNIIMHTVDPELYIKTKDLFVEILEICHYLIEPNSWIKIRGQFIQNEPESVLYSSETRELYNWLALEINLVIDLLTPSENNKYFNFNKKTRRYFCPSCYSGFREDYEDEQIPRLAQLIPNEPTSNTIYCLVCNESYEVLREDCTAEDCLGNVIDPDDGTCLTCGSDNFRD
>AP019314.1|BBH40762.1|3593723_3593945_+|XisI-protein-like
MDKLNYYQSIIKKILTEYAEISSQVPDQDIEEILMFDHNRSQYLWFNIGWKNGKRIKAISVYLRLKNDKIYIE
>AP019314.1|BBH40763.1|3594243_3595140_+|hypothetical-protein
MVSKIDRQAFLQSLIVPPGKEISLHKDYDPGFKPDYITKEDATLLLQQGIEKMAEFQDKLYAQDTYALLINLQAMDAAGKDGTIRHVMSGLNPQGCQVFSFKVPSAEELDHDYLWRYYKALPERGRIGIFNRSYYEELLVVRVHQNLLERQKLPPEDRTKKVWQRRFEEINNFEKYLVNNGVIVLKFFLNVSKGEQKKRFLERIDRPEKNWKFSENDVKERAFWGDYMKAYEEVFNHTSTEWAPWYIIPADRKWFTRLAVGAVIYHTLESLGLKYPTVTEEHHQALLKAKEILENEPD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: AP019314_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_27

3754066-3754331

TypeV

Consensus_repeat	Method
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	CRT
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	PILER-CR
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CRISPRCasFinder

3 spacers

cas14k

The CRISPR arrays of AP019314_27

>merge|AP019314|27|3754066-3754331|CRT,PILER-CR,CRISPRCasFinder
AGCAAAATTAATTACACATTAGGATTAGTTGGAAACTAAAAAACTAAGGCTAATTCATTAATTAGCCTTACTCTTATTCCTTACCTATTAGGTCAAATAGGATTAGTTGGAAACATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTCCCTTACCTATTAGGTCAAATAGGATTAGTTGGAAACTGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGACCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAG

>AP019314|27|2|3754066-3754331|CRT
AGCAAAATTAATTACACATTAGGATTAGTTGGAAAC	TAAAAAACTAAGGCTAATTCATTAATTAGCCTTACTCTTATT
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	ATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	TGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAG

>AP019314|27|2|3754144-3754330|PILER-CR
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CTGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA

>AP019314|27|27|3754144-3754330|CRISPRCasFinder
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CTGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH40904.1\|3753133_3753457_-\|putative-transposase	unknown	unknown	unknown
AP019314.1\|BBH40906.1\|3754539_3755448_-\|transglutaminase-like-protein	unknown	unknown	gnl\|CDD\|224224
AP019314.1\|BBH40896.1\|3746649_3746856_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224514
AP019314.1\|BBH40903.1\|3752180_3752426_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40913.1\|3760794_3760974_-\|transposase	unknown	unknown	gnl\|CDD\|181509
AP019314.1\|BBH40899.1\|3747910_3749194_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
AP019314.1\|BBH40897.1\|3746858_3747086_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377942
AP019314.1\|BBH40915.1\|3762377_3763145_+\|amino-acid-transport-system-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
AP019314.1\|BBH40907.1\|3755602_3757039_+\|small-GTP-binding-protein-domain	unknown	unknown	gnl\|CDD\|206646
AP019314.1\|BBH40905.1\|3753829_3754042_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40900.1\|3749633_3750350_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40909.1\|3757465_3757654_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40902.1\|3751460_3752192_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379312
AP019314.1\|BBH40898.1\|3747344_3747878_+\|DNA-binding-ferritin-like-protein	unknown	unknown	gnl\|CDD\|236521
AP019314.1\|BBH40908.1\|3757184_3757481_-\|plasmid-stabilization-system	unknown	unknown	gnl\|CDD\|368240
AP019314.1\|BBH40912.1\|3759482_3760547_+\|transposase	cas14k	-	gnl\|CDD\|223747
AP019314.1\|BBH40914.1\|3761029_3762106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182881
AP019314.1\|BBH40901.1\|3750577_3751420_+\|transposase	unknown	unknown	gnl\|CDD\|372577
AP019314.1\|BBH40910.1\|3758127_3758820_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
AP019314.1\|BBH40911.1\|3758910_3759480_+\|resolvase-related-protein	unknown	unknown	gnl\|CDD\|239738

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH40906.1\|3754539_3755448_-\|transglutaminase-like-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	7.37436e-35
AP019314.1\|BBH40911.1\|3758910_3759480_+\|resolvase-related-protein	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	8.97981e-51
AP019314.1\|BBH40896.1\|3746649_3746856_+\|hypothetical-protein	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	8.11386e-16
AP019314.1\|BBH40913.1\|3760794_3760974_-\|transposase	gnl\|CDD\|181509	PRK08629, PRK08629, coproporphyrinogen III oxidase family protein.	0.00428318
AP019314.1\|BBH40899.1\|3747910_3749194_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.96321e-16
AP019314.1\|BBH40897.1\|3746858_3747086_+\|hypothetical-protein	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	5.43819e-16
AP019314.1\|BBH40915.1\|3762377_3763145_+\|amino-acid-transport-system-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.46956e-125
AP019314.1\|BBH40907.1\|3755602_3757039_+\|small-GTP-binding-protein-domain	gnl\|CDD\|206646	cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.	5.62943e-40
AP019314.1\|BBH40902.1\|3751460_3752192_+\|hypothetical-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.43111e-15
AP019314.1\|BBH40898.1\|3747344_3747878_+\|DNA-binding-ferritin-like-protein	gnl\|CDD\|236521	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional.	1.58294e-88
AP019314.1\|BBH40908.1\|3757184_3757481_-\|plasmid-stabilization-system	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	5.15745e-07
AP019314.1\|BBH40912.1\|3759482_3760547_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.32871e-22
AP019314.1\|BBH40914.1\|3761029_3762106_-\|hypothetical-protein	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	8.77391e-40
AP019314.1\|BBH40901.1\|3750577_3751420_+\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.60816e-26
AP019314.1\|BBH40910.1\|3758127_3758820_+\|putative-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.72665e-27

>AP019314.1|BBH40905.1|3753829_3754042_+|hypothetical-protein
MDNLSIYKTSVTVNINQIGRLWHRMYPKNNHQYLELLTIFPDDSDDCAYFLGFLDENNGQEGKFQKLWPK
>AP019314.1|BBH40904.1|3753133_3753457_-|putative-transposase
MVINPTNKTVSDETKQLIDKLLLERISLRGIARVTGVSWSWLQNYVNNKLAAVPRQIKVSDKPKGKLVRECDEMWSWVFSKTIKVYIWLAIDRKTREIIGCYLGFAE
>AP019314.1|BBH40903.1|3752180_3752426_-|hypothetical-protein
MLTQHGFDCFLYDLNPYKTYNQQQEIMRIRYRLGQGETAEFLESQVRGEGLRGQLVELENLLGEKVRELGRLIGDELNLSR
>AP019314.1|BBH40902.1|3751460_3752192_+|hypothetical-protein
MSEYIDVIPYDEHEEKHAYYQDMMSKMIEIFLEHSSNNSSPIRILELGAGTGIFTVRLNKITNVTEIVAVEIDWHCYQILKGKFGEQYKKVKTLNKDSRTYNPEGEFDYIFSSFADHHIKTADKAKYFDNIKQNLKPNGLMIVGDEFLRKHDPNDRDDRDSALKDYHSHIIDIAKGQGEMILAELERQALQSGLEEKGDFKVSCEQYEELLKQAKFKFKKEKIGPENIDNIGGVYVYTAWLPT
>AP019314.1|BBH40901.1|3750577_3751420_+|transposase
MNYEQVKTLKPTEFKRLCGVYPDTFKDMVTVLKAEKVWQKKTGRPSKLSTEDQLLITLEYWREYRTYFHRGNSWGVNESTAYRIVRKVENILIKSGLFNLPGKKALLESNSEIEVIVVDVSEQEIERPKKKQKSCYSGKQGYHTLKSQVVADQKSEQVICVRCEKGRVHDFRLWKESKIRLNKEIEILGDKGYQGIQKLHQNSQIPHKKKKKEKLSKEQKKANRQLSQRRIVIEHIHRRLKIFRILSSRYRNRRRRFGLRLNLIAGIYNYELRCRQKDIS
>AP019314.1|BBH40900.1|3749633_3750350_+|hypothetical-protein
MVEAILPGTYITVRDEGLISAGQVVSGNIGIVGTAAKRPVDEVQILGSFSEAKAIFGEIDPARQLTLIQALEQIYNNGGKTVYAVRTGTNATRAAYKIKDSTDKDLVKLEAQTPGTWGNDIKIKITNADSSGKSKKVELTYQNTKETYTISKSGDLEQQVNNQTKGSNLVTATLAKDSSSEALPKNTSESGEKFAAGSDGKPASAEEYKNSLVQLENELINLVLLAGQDDRMSPTPKW
>AP019314.1|BBH40899.1|3747910_3749194_-|serine/threonine-protein-kinase
MLDRVLHSRYQVQQVLGKKTILARDRHTTQLVIIKLISVPSGQGSQVIGEITGKIALLRQLSHPSLPKYLDSFEIDSSQEQIIAIVRPYLSAQPLENYLNSSYLLAEQDLKQIAKYLLEILSYLHQQDVPINHGNIKLSNILFDTQSHRFYLVDFAFDSDSPTTDLEDIGKTLISLGTGIKHRYIPENFEQKTNLSAFFIYWLKRLSNSPPDPHFRSVTEALASLYSCQLILVSIGNLTKPYGSEVTVYKKDNLLQIKIASKTKQKFFNNLKTQLRQFLPSLFFTIILLTIVGIYDLKLVAFLIPIILIFLLNLISSSLSWQLWKSFWQGELELKITPKKVSLYQKLWGLKFKLTADAASCEIYSLIRRNVTVTMQGENVNIIPPSLVLVANHREYVITASEDVSEAELDWLAQQLSDWLRLPITRI
>AP019314.1|BBH40898.1|3747344_3747878_+|DNA-binding-ferritin-like-protein
MVATPVKTKTTGQYYATRIDLALDIRKAIVEILSQTLAASLDLKTQVKQAHWNVKGLNFYQLHSLFDEMATELEGYGDMVAERITALGGTALGTARIAAANSILPEYPADIVDGSEHIVALAERYALYAAHLRSAIDTTGNQGDADTADLYTEISRDIDKRLWFLEAHLIKSEDVIR
>AP019314.1|BBH40897.1|3746858_3747086_+|hypothetical-protein
MSSALPVLSGREVVRVFETFGWQVARQSASHIIMVKEGEQVTLSVPDHREVAKGTLRSLIRTAGITVQEFVSGMR
>AP019314.1|BBH40896.1|3746649_3746856_+|hypothetical-protein
MKLTVTLDRDEDGVWVVECPSIPGCVSQGKTRAEALENIRDAIIACLQVRAERGLPLTIETHQVEVMA
>AP019314.1|BBH40906.1|3754539_3755448_-|transglutaminase-like-protein
MSVIYDLEHITSYHYRKLVTFGEHRAIFLPSAGHGERIISYSVEANIAAKTRWTMDTLSNNVVGIEFAQAASELIVTCRLRAEHFGLKAIADFPLDQRAIEIPIQYTPDEWLDLVVFMRPHAEDADGSLAAWAKSFVAGDQDDTLDVMARMMAAIKDNFTYQSRESEGTQSPGETLRLKSGTCRDYAWLMIEALRRLGLACRFVSGYLYDAALDGGEVGMTGSGATHAWLQVYLPGAGWRNYDPTNQITAGFDLIRVAIARHPGQIIPLSGSWFGDADDYLSMDVKVTIRKLGTLPDFDPRE
>AP019314.1|BBH40907.1|3755602_3757039_+|small-GTP-binding-protein-domain
MTSDPFLDRAWNTEDLEQALRGVGTIQEELNYNQARNSLSKLVDRLDLTSIEKIGLEAEIDRLVALLEKLDRSLIQIAAFGLVGRGKSSILNALVGQEIFTTGPLHGVTRTIKGVNWQLSSDDTFPHLARLTLNGQGNAQVQLLDTPGIDEVDGQTREILACQVAQQVDLILFIISGDMTKVEFSALAKLREAGKPMILVFNKIDQYPEVDRLAIYEKIASERVKELLSPDEIVMVAASPLLAETVKGQDGRLKMQRFCGKPQIEALKLKILEILEREGKSLVALNSMLYADEVNEQIVARKMAIRDRGANQLIQKAVMIKASAIALNPVTVLDLFTGAVIDLAMILALSRLYGIDLTRQGAIALLQKIALNMGGISASEFLAVLGLSSLKGLLGLSIPATGGISLLPYTSIALTQAGVAGVSCYAIGQVTKTYLANGATWGPDGPKAVVASILDSLDETSILNRIKRELGSKLGVGG
>AP019314.1|BBH40908.1|3757184_3757481_-|plasmid-stabilization-system
MADRVNYRLVWSPKAIEDVDAIASYISRDSPSYAAAVVRRILDISYSLENCPLEAKKCAEFSDETIREKSAYAYRLIYQIQGAVVIIAAIVHSKHFLD
>AP019314.1|BBH40909.1|3757465_3757654_-|hypothetical-protein
MNSIRQKVESLLNQLPDDCSIEDIQYHLYVLEKVRQSLNAASLENTIPQEEVEGLLNKWLIE
>AP019314.1|BBH40910.1|3758127_3758820_+|putative-transcriptional-regulator
MSSSVPSSDFIPLIGQETEIFNWAKSHYRNHTFAKDEKVATRPGLLYFVESGAIRIVGKAQVNVIDQKSSRQLPMADSEEVFLGFVGAGQPFEIVSQFPFQLQAQAHLDGTELVWLYWEDIEKWPQLRAAVMETFRHQYQRKLFWLSILGQKRSLDRLMGFLVLLLEEYGQPCVEGYYLPYPLTHAQIASAIGTTRVTVTRLIGKLRQQNSIFFKQDNLIGLPSLFLSQN
>AP019314.1|BBH40911.1|3758910_3759480_+|resolvase-related-protein
MKLSDYAKKTGISYRTAWRWWKQGNLTGYQLPSGTIIITDDNHSKPDLIACIYARVSSAENKDNLDRQADRLKDYAVARGYKIYKVVKEVGSGLNDNRQQLAKILVDPNYNVLIVEHKDRLARFGTNYLEILLKELDKKVEIVNQSEDNQDELMSDLIAIITSFCSRIYGLRRSKRKTEKIIAELKDNG
>AP019314.1|BBH40912.1|3759482_3760547_+|transposase
MLVAERHIIKKGHRFWAEIDNLSWQSKNLYNSANYLIRQNFIYGHGYLTYNQMASLRSKTEQYQALPAKVSQQVLRGLDKNWKSFFAASSEFKSHPDKFLVKPKIPSYKEPKKGRNLLVYTIQAISKVGLRQGLVKLSGTSIALPTRVAERIAEVRIVPKCDCYVIEVIYEKTEQFLAPNEKIAAIDLGIDNLMAVTSNQPDFIPLLINGRPLKSLNQFYNQRRAKLQSLLKGNRQSSQRIRRLTRCRNQKVDDYLHRASRYLVNLLVEQEITTLVIGKNDGWKQEVNLGKVNNQKFVTIPHARLIEMISYKCQLEGISVILQEESYTSASNFLNDDPLPVYGQITEKPVFSGN
>AP019314.1|BBH40913.1|3760794_3760974_-|transposase
MKYLGNHLNGTVGQTETDPNALAESGLWVFSGDIENLSCLVEQGISDSDLERISRHSVA
>AP019314.1|BBH40914.1|3761029_3762106_-|hypothetical-protein
MKNDAKIIDLVIRLFFLGLLLFAGFTLLRPFLTMILWGAILAIAWYPLFLWLKKLLAGRAKLATVLLTLLCLGIIIGPVSGIAAVLAGNLRTMAEYIDTGAVLIPPPPADVATWPLIGERIAGLWQQASDNTGQFLQRFEPQLKELGKISLSLATSTGLTVLKFIASILIAAALTLSAKNLTRPMNRLAEKIAPGRGIALAGLTASTVRNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTLLTLILGILQIGPGLIVLGALIHAWVTLPNSIALLFTLWMIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYGIIGLFVGPVLLGLCYELVRAWIGEDSPEPVANSHDRPI
>AP019314.1|BBH40915.1|3762377_3763145_+|amino-acid-transport-system-ATP-binding-protein
MQANLLEVRGATRRFGGLVAVDGVSFQVQKNEIFGLIGPNGAGKTTLFNLITGLIPLSSGDLIYQGYSLANYRPHQIAQAGIARTFQNLRLFGELSALENVAIAGNIHNSSNLWTGIFGLPVSRREEEKTYKRAAELLDLVGLTDQSNRKASNLAYGDQRRLEIARALALQPQLLLLDEPAAGMNPSEKGSLSQLIRQIRDNLALTVLLIEHHVPLVMGLCDRIAVLDFGKLIALGEPATVRENPAVIEAYLGDE

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Click the colored protein region to show detailed information

Crispr_ID: AP019314_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_28

3829006-3829126

Orphan

Consensus_repeat	Method
GGGTGTGGGGTGTAGGGTTTTACCGATTTTGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_28

>merge|AP019314|28|3829006-3829126|CRISPRCasFinder
GGGTGTGGGGTGTAGGGTTTTACCGATTTTGAGGTAGTCAGTTACCTGGGGGTCTGCTGAAAAAGTTTTTCCTAGGGGCAGGGTGTAGGGTGTGGGGTGTGGGGTTTTACCGATTTTGAGG

>AP019314|28|28|3829006-3829126|CRISPRCasFinder
GGGTGTGGGGTGTAGGGTTTTACCGATTTTGAGG	TAGTCAGTTACCTGGGGGTCTGCTGAAAAAGTTTTTCCTAGGGGCAGGGTGTA
GGGTGTGGGGTGTGGGGTTTTACCGATTTTGAGG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH40986.1\|3825354_3826380_+\|putative-aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381306
AP019314.1\|BBH40984.1\|3822968_3823478_+\|putative-peptidase-PatG-homolog	unknown	unknown	gnl\|CDD\|173802
AP019314.1\|BBH40997.1\|3836777_3837479_-\|transposase	unknown	unknown	gnl\|CDD\|376564
AP019314.1\|BBH40996.1\|3833398_3834409_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40985.1\|3823444_3825064_+\|putative-peptidase-PatG-homolog	unknown	unknown	gnl\|CDD\|274838
AP019314.1\|BBH40991.1\|3829374_3829617_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH40981.1\|3820778_3821738_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275240
AP019314.1\|BBH40988.1\|3826843_3827044_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40994.1\|3831360_3832236_+\|cobalt-transport-system-permease-protein-CbiQ-homolog	unknown	unknown	gnl\|CDD\|367052
AP019314.1\|BBH40989.1\|3827328_3828474_+\|cytosine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|223348
AP019314.1\|BBH40982.1\|3821882_3822038_+\|unknown-protein	unknown	unknown	gnl\|CDD\|275239
AP019314.1\|BBH40983.1\|3822109_3822901_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368559
AP019314.1\|BBH40998.1\|3838383_3838533_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH40990.1\|3828448_3828940_-\|unknown-protein	unknown	unknown	unknown
AP019314.1\|BBH40987.1\|3826376_3826784_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377602
AP019314.1\|BBH41000.1\|3839635_3841747_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
AP019314.1\|BBH40992.1\|3829594_3829846_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
AP019314.1\|BBH40999.1\|3838908_3839520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378716
AP019314.1\|BBH40993.1\|3829998_3831357_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|234628
AP019314.1\|BBH40995.1\|3832949_3833294_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH40986.1\|3825354_3826380_+\|putative-aldo/keto-reductase	gnl\|CDD\|381306	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR). The AKR9A family includes Aspergillus nidulans sterigmatocystin biosynthesis dehydrogenase StcV, Aspergillus flavus norsolorinic acid reductase (NOR), and Phanerochaete chrysosporium aryl-alcohol dehydrogenase [NADP(+)] (AAD), are founding members of aldo-keto reductase family 9 member A1-3 (AKR9A1-3), respectively. StcV may be involved in the dehydration of 5'-hydroxyaverantin to form averufin. NOR is involved in aflatoxin biosynthesis. AAD (EC1.1.1.91) is involved in lignin degradation and reduces aromatic benzaldehydes to their respective alcohols in the presence of NADP(H). The AKR9B family includes Saccharomyces cerevisiae aryl-alcohol dehydrogenases AAD14p, AAD3p, AAD4p, and AAD10p, which are founding members of aldo-keto reductase family 9 member B1-4 (AKR9B1-4), respectively.	0
AP019314.1\|BBH40984.1\|3822968_3823478_+\|putative-peptidase-PatG-homolog	gnl\|CDD\|173802	cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).	9.29568e-39
AP019314.1\|BBH40985.1\|3823444_3825064_+\|putative-peptidase-PatG-homolog	gnl\|CDD\|274838	TIGR03895, hypothetical_protein, cyanobactin maturation protease, PatA/PatG family. This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc.	0
AP019314.1\|BBH40981.1\|3820778_3821738_+\|hypothetical-protein	gnl\|CDD\|275240	TIGR04447, hypothetical_protein, cyanobactin cluster PatC/TenC/TruC protein. Members of this family usually are small proteins (PatC, TenC, TruC) of unknown function in cyanobactin (prenylated cyclic peptide) biosynthesis clusters, where a different small protein is a known cyanobactin precursor (patellamide, anacyclamide, piricyclamide, etc). They may instead be the C-terminal domain of a longer protein that otherwise consists mostly of lectin-like or VWF type A domains, in similar context. Similar to the cyanobactin precursors, members of this family have two very strongly conserved regions separated by a hypervariable region, suggesting these proteins may undergo a similar maturation.	2.51371e-12
AP019314.1\|BBH40997.1\|3836777_3837479_-\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	4.82857e-28
AP019314.1\|BBH40993.1\|3829998_3831357_+\|GTP-binding-protein	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
AP019314.1\|BBH40982.1\|3821882_3822038_+\|unknown-protein	gnl\|CDD\|275239	TIGR04446, anacyclamide_precursor, prenylated cyclic peptide, anacyclamide/piricyclamide family. Members of this protein family occur primarily in Cyanobacteria. They average about 50 residues in length and are the ribosomally translated precursors of peptide natural products whose modifications include cleavage, cyclization, and prenylation. Sequences are well-conserved in the N-terminal region. They are nearly invariant over the last eight residues, but hypervariable just before that stretch. A related family, often in a similar genome context, is TIGR03678.	4.52755e-20
AP019314.1\|BBH40994.1\|3831360_3832236_+\|cobalt-transport-system-permease-protein-CbiQ-homolog	gnl\|CDD\|367052	pfam02361, CbiQ, Cobalt transport protein. This family consists of various cobalt transport proteins Most of which are found in Cobalamin (Vitamin B12) biosynthesis operons. In Salmonella the cbiN cbiQ (product CbiQ in this family) and cbiO are likely to form an active cobalt transport system.	9.42313e-29
AP019314.1\|BBH40989.1\|3827328_3828474_+\|cytosine-specific-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.22475e-72
AP019314.1\|BBH40992.1\|3829594_3829846_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.69773e-12
AP019314.1\|BBH40987.1\|3826376_3826784_+\|hypothetical-protein	gnl\|CDD\|377602	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like. GGACT, gamma-glutamylamine cyclotransferase, is a ubiquitous enzyme found in bacteria, plants, and metazoans from Dictyostelium through to humans. It converts gamma-glutamylamines to free amines and 5-oxoproline.	2.7716e-16
AP019314.1\|BBH41000.1\|3839635_3841747_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	0
AP019314.1\|BBH40999.1\|3838908_3839520_+\|hypothetical-protein	gnl\|CDD\|378716	pfam11780, DUF3318, Protein of unknown function (DUF3318). This is a bacterial family of uncharacterized proteins.	4.4826e-69
AP019314.1\|BBH40983.1\|3822109_3822901_-\|hypothetical-protein	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.37658e-10

>AP019314.1|BBH40990.1|3828448_3828940_-|unknown-protein
MFVIQRADIIKKAIQLGVPSLNLQSSPAQLGTAIIQHWNEKIRSSQTAQNVINSYEGILLKNREGNEYVYCEYPLNPLDPNVFSWAWAIDKKTGGVGAGLQGSIAGKTQLVWYKNQKQLFRSRTIPAAAIRLRIERTRLTIDRYVETIFAALQTQTNTQDFVP
>AP019314.1|BBH40989.1|3827328_3828474_+|cytosine-specific-methyltransferase
MKQQIIDLFSGAGGLTTGFHLAGFESICAIDVNAKALATYQHNYPKTRTFQEDIRKVNPSELRLYLGLQREELTALIGGPPCQGFSRNIPAGYRYLNDSRNHLYKSFLGFVQEFRPLHVVMENVPEILKAYGGIIRDEIVAHLESWGYQVVTTSLNAAYYGVPQTRSRAFFLASLERLPSLPQATHSGDIRSDYKAVKSWTQLTLLEPNIAPVTTVKDAISDLPTLEAGQAYDHEIYTREPETIYQQKMREQSQKIVNHIARALTPIQMSRVQILAEGQDARDLPAELAPKKHYSGAYGRLSWDKPARTITRWFFHPGSGRFFHPTQNRTITIREAARLHSYPDHFHFLGTYTDMASQIGESVPPLLGKVVADSMGQNLEY
>AP019314.1|BBH40988.1|3826843_3827044_+|hypothetical-protein
MYLLLEVASGKFPVYFVAVYVVGFLAAVTIGSIAWYNSKRPVGWEDAQRPDIVPEVKTEVDSDSQS
>AP019314.1|BBH40987.1|3826376_3826784_+|hypothetical-protein
MMEVFVYGTLKPRESNYSAYCAGKVINSKTAYTKGYLYHLTALGYPGLTEGDGWVKGILLTFNADYDIGLLDGLEDYQPGRDPEENEYQRRRIPIYNLERELIGEAWGYMMTPAKIAFHGGIWLPSGWWTSSDRE
>AP019314.1|BBH40986.1|3825354_3826380_+|putative-aldo/keto-reductase
MRYKLLGNSGLRVSELCLGTMTFGQDWGWGSDKEESRAVFQAFAEAGGNFLDTANIYTNGTSETLVGEFVKGDREKWVIATKYSLNTRPGDVNACGNHRKNLFQAVEASLKRLGTDYIDLLWLHLWDSLTPIEEVMRAFDDLVRMGKVLYIGISDSPAWIVSQGNTLATLRGWTPFIGLQIEYSLKERTPERELLPMAKALNIGVTAWSPLGGGVLTGKYNQPNPVDGRLSMTDQPFQIFDRDLKIAETVLEIAREIEKSPAQVALNWLRNRPNAVIPIIGARKLSQLQDNLACVDFNLTGEQLQRLDNISAISLGFPHELLASQFVGDILLGGVAAQLDR
>AP019314.1|BBH40985.1|3823444_3825064_+|putative-peptidase-PatG-homolog
MCRLSSNSKRIAHEFIDKAIRQAQANNILVIAPGGNDKGECWCVPAVLENVLAVGAMKDTGEPFKFSNFGGKYATQGILAPGENILGAQPATDDPIRKKGTSCAAPIVTGTAALLMSLQLEQGLSPDAEAVRAALINSAIPCDPNEVEEPERCLLGKINIAGAYELLTGEKLQTVEADNNLSNNIIESAVIPMTVTTSVIPSNTTEMATQGITITPPTAATIELAIAPSNASENVSSTGLIQNNQTNKNIVFNSVVPSQRSNLVYVLGTLGYDFGTEARRDTFKQLMPSITIDNLELPSNPYDARQMVDYLESNLSETKSLIWTVNLELTPIYAIKPVGAFAADIYQVIQYMLAGQILPESDEDYVERVSIPGMLTEETVKLFSGQIVPVIKVNSPRGMYGWKVNTLIESALETVSAEHEIADEARMRRSLTSFLNRIYYDLRNVGQIARDRALNFAATNAFQAVQTFSQAVALGMELHSIEVEKSPFCRYGSECWDVKLKFFDPENGLRAKRVFRFTIDVSDRTPVTLGEVRSWAVSK
>AP019314.1|BBH40984.1|3822968_3823478_+|putative-peptidase-PatG-homolog
MPDLNAIPGMTALRSQTKGDPRIKIAVLDGPIDLDCACFQGANITRLDPYWSQEFPIDPQHLQAFLDVEKSAKSDEEKGDMLKEAIPDENILQSLHLRFHANHIISTICGQPDSPVEGIAPNATVINIPIAYSNEDFINPLNLSRAISTAIEQGVNIIHCAACHPTQSG
>AP019314.1|BBH40983.1|3822109_3822901_-|hypothetical-protein
MSSMTPTAQPSTTIQDPSATVYCDSPLPDHTQLPDKDGSFVKNYQEPPQADLLTDTITPILDKLHPDGNYCLGRDCGIYWRLPEYPESLEKGAVAPDWFYVPHVPTTIEGQVRRSFVMWKETIEPVIALEFVSGNGEEERDKTPVKGKFWIYERAIQIPFYGIYEVNKAQIEMYQLVNGRYQKMTPNQRGHYPIVPLKVELGIWQGEYQNQFFPWLRWWDGEGNLLLTSQESTERERQRAEQERQRADRLAEQLRALGIEPED
>AP019314.1|BBH40982.1|3821882_3822038_+|unknown-protein
MKTPKLTPRITAPVQRDNISTVPSDGNVITPATFCDLATKQCYPFAGDDAV
>AP019314.1|BBH40981.1|3820778_3821738_+|hypothetical-protein
MTAIPVDLVIVIDTSVSVKAEAEGLSQAAETAIANARSHCPSDLRVIWLGIEGTWKNTQFERTVRDYLSKTCAIPESALKSRKKGELPSGGAQEDAARVMQDLATHFDWRTGAKRAIFYLGDEALDAGGDKTLAKDIEAANQAIQGAKTAQVIIHTYCGQSKSRYRHTIEAEYARVAQETGGQSFTAEGSLRDFATVLEQIICGSQSLPQIPLTEPQNNDTPTTALATDGDPQPVLQQTHGEHQTMSKSKDSTESAAAAANVTQPTPEKPKTDQPETTEPKTKYIPATGLEDYGRWKTMFKDRKANPNDPPFRRGRIWS
>AP019314.1|BBH40991.1|3829374_3829617_-|unknown-protein
MLTNDETKRLKQAILAAIASPLIGSIEDYSWEAIFHYIKNIPLSDPALGRSKLLYDAVDSKTASGWSLKSLQLNSLTRAG
>AP019314.1|BBH40992.1|3829594_3829846_-|XRE-family-transcriptional-regulator
MQSGQLEQILGRELQRYRQEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITNALGLRMSEFLYSVEESLSVNERRD
>AP019314.1|BBH40993.1|3829998_3831357_+|GTP-binding-protein
MKLPVVAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIVDTGGLVFNDDSEFLPLIREQALIALAEASVAIFVVDGQGGITAGDREIAAWLRQQNVPILLAVNKCESVEQGILQATEFWELAIGEPFPISAIHGSGTGELLDAVIKYLPPAAEIPENEEIKVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLIEREGQVYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTEQDLKLAGRIIEEGRAVVLVVNKWDAVEKDTYTINTYTKMLQDRLYFMDWAEMIFVSAMTGQRVTKILELVDIAAESHRRRVSTSVINDVIEEAVKWHNPPTTRGGKQGKLYYGTQVSSQPPTIALFVNDPQRFNDNYRRYIEGQFRQQLGFKGTPIRLIWRGKPAREVEKTVNRATKV
>AP019314.1|BBH40994.1|3831360_3832236_+|cobalt-transport-system-permease-protein-CbiQ-homolog
MDLLRSLPIGLYLDQPITRLHQLDARVKFIWLMAFLAAPLLANPWWRLALVGLLMFLTLLAPIPPRVWRQQMGWLIFLAIIVFLITAITPDGLAVSIQPRLPDEGLNLPPASDYQYVLWDRGRLFVTRRSLELAVRISTLVFTLIYSTNLFLLTTAPEEITEGLENLMSPLRRFNVPVTEISLTLTLSLRFIPLVLEEVQNLARAVRTRAIDWQKLGIKKSLNVWLTVVEKFLDNLLLRAEQIAIAMEVRGFTSPNQHQVRWHELKLRWADLIALFLLIPFWAARLVWGGL
>AP019314.1|BBH40995.1|3832949_3833294_+|hypothetical-protein
MALQEGTYIWEYGDTTQALWFTASYNTVTNQWTVDMKKGSMDLNALWWSNGDSNADGTIKLLSKDNSLNMNGTGIVWDGYDKISDTGLTGTEHNGSNLLTAGNKLNGFYFGSPI
>AP019314.1|BBH40996.1|3833398_3834409_+|hypothetical-protein
MAQGVVTLGVRATSVNGTGSIKAVDGQFVFVPYDNTPPTVTVDIVNASLNDGTNSSLVNFEFSETVNGFTAGDVNVSGGTLSDFTQVDGNSYTAIFTATDAVETIGSVSVAADSYSDIAGNNGGAGSDTVTIDTLNPTLALDIVNASLNDGTNSSLVNFEFSETVNGFTAGDVSVSGGTLSDFTQVDGNSYTAIFTADDAVETTGSVSVAAASYSDVAGNQGGAGTDTVTIDTKNPTLAVDIVDASLNDGDNNSLVSFEFSEDVAGFDNSDVSVSGGTLSDFTQVDGNSYTAIFTADDAVETTGSVSVAAASYSDVAGNDGGAGTDTVTIDKLNGA
>AP019314.1|BBH40997.1|3836777_3837479_-|transposase
MTEEKTWVGIDVSKEVLDIYVLPQGLTLQQPNSDVGVQSLIEQLHPLSPSLVVVESTGGLERALVSGLQAATIPVAIANPRKVKGFATALGKAKTDKLDAQVIAQFARAVQPQPQPVVAPQAQQLSDLVRRRQQLVEMQVAEKNRLSRASETVQLDIKAHIEEIQQRIESLNEQIQSLAQQQADWQRKNEILQSVKGIGKVSSALCLAELPEMGTLWRKTDCPAGRGRSYQPR
>AP019314.1|BBH40998.1|3838383_3838533_-|hypothetical-protein
MKQVLTVSCQLQVTPEQVAAIEATLKAFAEAGDYVNGTVKPNLLTSSPP
>AP019314.1|BBH40999.1|3838908_3839520_+|hypothetical-protein
MNQDNEISHLLDLMPASGRMMTRIVSKPESTKVIETNFPLPWQRGVRPIQINFDLWRQLSRPQRDLVLLRAVSVLTAVKWFKPDLDRLIALAGMIGLTVETLQTDAVGMAVAGGLTALAINRIWREKRSPQRELDADEAALKVAVRRGYTETEAAKGLLSAIETIAEIEGRSSLNFNELLRCQNLKKLANLSFVGVPDQVRQS
>AP019314.1|BBH41000.1|3839635_3841747_+|ATP-dependent-DNA-helicase-RecQ
MAAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYIKGQKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKARQQLRQVLDYAEGTECRRSRVLGYFGESFAGNCGNCDNCRNGTNNQDWTIEAQKFLSCVARTGQKFGMMHIINVLRGGKGERITQYQHHLLSTYGIGKDKTVEEWKRLSRSLVQQNILVETEDDFRILKLNQHSWEVMRKQRSVFIAVPQKANGQIVGDDNPNMVESDLLFERLRQLRKKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFCQDSLPSTQFLTLQYYQDGLNAEEIARKRSLKVSTIYEHLAKLLEAGYEIDINQLVSKNKQEYIRLVIKKLGDQSLKTLKENLGDNYSYEEIKLVVAWQRRPRQ

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Crispr_ID: AP019314_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_29

4642866-4642956

TypeV

Consensus_repeat	Method
GATTTGCGTTGAAGCACTTTTTTGC	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of AP019314_29

>merge|AP019314|29|4642866-4642956|CRISPRCasFinder
GATTTGCGTTGAAGCACTTTTTTGCTCGCTGTATAAGGGTTTCGCCGATTTGACATCCCTAAAATGGATTTGCGTTGAAGCACTTTTTAGC

>AP019314|29|29|4642866-4642956|CRISPRCasFinder
GATTTGCGTTGAAGCACTTTTTTGC	TCGCTGTATAAGGGTTTCGCCGATTTGACATCCCTAAAATG
GATTTGCGTTGAAGCACTTTTTAGC

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH41765.1\|4633130_4634258_+\|putative-DNA-methylase	unknown	unknown	gnl\|CDD\|236981
AP019314.1\|BBH41770.1\|4640276_4641389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372192
AP019314.1\|BBH41772.1\|4642980_4643556_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225420
AP019314.1\|BBH41766.1\|4634258_4635236_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|133424
AP019314.1\|BBH41774.1\|4644756_4645008_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH41762.1\|4629293_4630481_+\|transposase	cas14j	-	gnl\|CDD\|223747
AP019314.1\|BBH41781.1\|4651144_4652260_+\|type-IV-pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
AP019314.1\|BBH41776.1\|4646383_4647007_+\|methyltransferase	unknown	unknown	gnl\|CDD\|379312
AP019314.1\|BBH41771.1\|4641793_4642786_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
AP019314.1\|BBH41779.1\|4648727_4649516_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH41775.1\|4645100_4646264_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|178068
AP019314.1\|BBH41768.1\|4635708_4638360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224563
AP019314.1\|BBH41777.1\|4647106_4647661_+\|HAD-superfamily-hydrolase	unknown	unknown	gnl\|CDD\|225090
AP019314.1\|BBH41769.1\|4638538_4639888_-\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235059
AP019314.1\|BBH41767.1\|4635262_4635478_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371791
AP019314.1\|BBH41764.1\|4632208_4632559_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH41778.1\|4647913_4648669_+\|putative-methyltransferase	unknown	unknown	gnl\|CDD\|379312
AP019314.1\|BBH41773.1\|4643828_4644617_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225420
AP019314.1\|BBH41763.1\|4631044_4631764_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274742
AP019314.1\|BBH41780.1\|4649640_4650633_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH41765.1\|4633130_4634258_+\|putative-DNA-methylase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	5.16281e-160
AP019314.1\|BBH41770.1\|4640276_4641389_+\|hypothetical-protein	gnl\|CDD\|372192	pfam12565, DUF3747, Protein of unknown function (DUF3747). This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.	1.21143e-95
AP019314.1\|BBH41772.1\|4642980_4643556_-\|hypothetical-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.62486e-39
AP019314.1\|BBH41766.1\|4634258_4635236_-\|malate-dehydrogenase	gnl\|CDD\|133424	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	5.58214e-178
AP019314.1\|BBH41762.1\|4629293_4630481_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.1172e-66
AP019314.1\|BBH41781.1\|4651144_4652260_+\|type-IV-pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	4.68081e-136
AP019314.1\|BBH41771.1\|4641793_4642786_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
AP019314.1\|BBH41775.1\|4645100_4646264_-\|ferrochelatase	gnl\|CDD\|178068	PLN02449, PLN02449, ferrochelatase.	0
AP019314.1\|BBH41768.1\|4635708_4638360_-\|hypothetical-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.8525e-63
AP019314.1\|BBH41777.1\|4647106_4647661_+\|HAD-superfamily-hydrolase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	9.28226e-58
AP019314.1\|BBH41769.1\|4638538_4639888_-\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	gnl\|CDD\|235059	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
AP019314.1\|BBH41767.1\|4635262_4635478_-\|hypothetical-protein	gnl\|CDD\|371791	pfam11910, NdhO, Cyanobacterial and plant NDH-1 subunit O. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The three nuclear-encoded subunits NdhM,NdhN and NdhO are vital for the functional integrity of the plastidial complex.	1.27206e-36
AP019314.1\|BBH41776.1\|4646383_4647007_+\|methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.22565e-23
AP019314.1\|BBH41778.1\|4647913_4648669_+\|putative-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.2246e-10
AP019314.1\|BBH41773.1\|4643828_4644617_-\|hypothetical-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	5.38598e-20
AP019314.1\|BBH41763.1\|4631044_4631764_-\|hypothetical-protein	gnl\|CDD\|274742	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.	5.73696e-49
AP019314.1\|BBH41780.1\|4649640_4650633_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0

>AP019314.1|BBH41771.1|4641793_4642786_+|peptide-chain-release-factor-2
MAAVPTFWDNLDTAQKTLQELNECKSSLETYQGWCGQLEDTKAIIELLELESDRTLLEEATDNLTHLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVTLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMPILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVETTDVTRVMNGDLDSFIEAYLRLGGAV
>AP019314.1|BBH41770.1|4640276_4641389_+|hypothetical-protein
MNLKSSLKFTLLFSLLGGCLLTTPSQATLFEQREVNQEDFIAIARPYGNGKYDLLILQQIPGKRQCWAVNGTEPTIVQPLLLDFDFTGSCERATDSNGYSLRIQGKDYGLEYLLRIVQRNGELVLVGTPRNPRQSEVIIGRTKGLGSGLMQIYLIDGWRFTKRSLAGQNLSHIYLTADSPNFNPPPELLAGNSYSLPRESVKAETPVNPAANPEVREYTFTAAETAVESNPQPVVNNPVPEPNLTPPSPVTPNLPPLTPPNSQNNNAIVPPPPPRNLGNPRSLSDVITFNRAAANPSSGNMSNSSRQGFKVVIEAKTESDRTRVRSLYPDAFPTSHQGRRVWQIGAFSSRDKAENALQTLAPLRGSIVPF
>AP019314.1|BBH41769.1|4638538_4639888_-|UDP-N-acetylmuramoylalanine--D-glutamate-ligase
MAKAAIIGLGRSGIAAARCLKRDGWQVTLSDRSDSPSLQATKTNLEREGIIVNLGQNLSLEASDLPNLIVVSPGVPWDAPILITAREKGIDTIGELELAWRYLQSSPWLGITGTNGKTTTTALCAAIFQKAGLNAPSCGNIGYAACELALKADKYDWIIAEISSYQIESSRDLSPKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSDRQILNGDDPYLRQIGVSQWQQAYWTSVQGKAALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYVCTYKGLDFINDSKATNYDAAAVGLQSVPSPAILIAGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQRAAELGPAKEAKVVLLSPACASFDQYPSFEHRGTHFRQLSLQL
>AP019314.1|BBH41768.1|4635708_4638360_-|hypothetical-protein
MLGSSFHLDHLFNKPLIACLLSCVGVLLPIPVLATPVAVLKSQENANQWTDITERLQNVGVNYCILQSNQWQSDADLNKIKVLIIPNVETISGLQADVLSRWLNRGGKIIVTGPAGNLSEPAVRHQLRSLFGAYWAYPHSQAYTLRPTNLGELKNQKPLASSLLGGVVIPTGVNSQTVAVWGARNNPPAVVLNNNSIFLGWRWGSDAVANLALDSAWLETALQRYGINRSSSNNTIAPYCQGQSTIVNNINNTPTAISRSERVAIAPRRPLPQISENPPSETARLSPSTEAIPPRASLTPQQISQMTAELQGLIGRYGVTLLALEASNSNISNTDKSLAQAFHNRGKNSPTSDTARQFRLALENAQGALNNFQNLIAQGAYTQAREFWLQARRSLWDNYPTNRQFAQPEIRAMWLDRGTIVEAKNEEDLAKVFDRMAAAGINVVFFETVNASYTIYPSQVAPEQNPLTRGWDPLKVAVKLAHERNMEIHAWVWVFAAANQAHNKVLEQPLDYLGPVLSRNPDWGATNKSGGSFDYSQGMKKAFFDPANPEVQNYLLSLYEEIVKNYDVDGLQLDYIRYPFQSQDSNQTYGYGKSGRWLFKQMTGVDPITLNPRGALWEQWTSFKIRQVDTFVSQVSTRLKQIRPHLKMSAAVFPLEQKERLYRIQQNWEEWGQNQWIDLIFLMTYALDTGTLEDKTKSLFDRQIAGNALIIPGIRLLKVPDQVTIDQLQFIRNLPTSGFALFATENLNPNLQTILNRIQGSIITKKTEPLPHRQPFKTAAARFNSLRQEWSFLIINNLWAMEEGTLKAWGQEVDEMANLLEQLANNPSPRNLTLTQNALKRFSYKFKSVMSRQKDLSAYQIQVWENRLATLQSLLSYGQMVEF
>AP019314.1|BBH41767.1|4635262_4635478_-|hypothetical-protein
MAATIKKGALVRVVTGNLENSLEALASDRRLPSYMFNSTAEVLDVKDDYALIKFYVPTPSVWLKLEQLEPV
>AP019314.1|BBH41766.1|4634258_4635236_-|malate-dehydrogenase
MVDFYDKLLPCQSPRVSVIGAGNVGRTLAQRIAEKNLADVVLLDIVNGLPQGIALDLMEAQGIELHDSEIIGTNNYEDTAGSDIVVITAGLARKPGMSRDDLMNVNAKIVVEAATKCLKYSPEAIFIVITNPLDVMTYLVWQATGLPPQRVMGMAGVLDSSRLQTFIAMELGVSTADVHAMVLGGHGDLMLPLPRYCTVSGVPITELMDEITINRLVERTRNGGAEIVKLLQTGGAYYAPASSACTMVETILRNQSRLLPAAAYLKGEYGLQDVYLGVPCRLGCRGVESILEVRLTDAERLDLHTSAASVRQNVHLALDSLKVLM
>AP019314.1|BBH41765.1|4633130_4634258_+|putative-DNA-methylase
MTRSYFATTARGLEEIAARELEFLGAKEVKPVFTGVHFQGDISLLYRVNLWSRIMFRVLVPIAEIPCGDGKELYDGIQAIDWRDYLSSEETLAVQCTGTNDRLNHTHYTALSIKNAIIDQQRQQGNPRSFVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQDDMALLDPFCGSGTIVIEATLKALNIAPGLSRSQFGFQKWPDYQPDLWQSLVKEAKEKQKFQLNAPIYASDADYEVLHQAEDNAYFCQVQDHINFSLQSITDLEPASDRGIILCNPPYGKRLGNTEELGALYKSFGDVLKQRFKGWTAYILSGNKELTKQIGLRSSRRTPLYNGSLPCTLLKYELY
>AP019314.1|BBH41764.1|4632208_4632559_+|hypothetical-protein
MTAGTRNQTDKKTRKKPKSGNKSQNWQVIEIWLRIIAYSAISITAVFAIARLLPYQQIQQAKLEEVRLAAQEKEERVNQLRGQFTRSFDPSQARQVMGEQSPRRDPNQRRIFWVSQ
>AP019314.1|BBH41763.1|4631044_4631764_-|hypothetical-protein
MLDSLLDSSLTLSLKTPLILLVLIALEAVLSADNAIALASIAQGLGDHQRQRQALNIGLVFAYILRMILILTATWVVKYWQFELLGAVYLLWLVFNYFASPEDKDHSHHSLQFHSLWQAIPLIAVTDLAFSLDSVTTSIAVADDTWLILLGGTIGVVTLRFMAGLFIRWLEEYTHLEDAGFVTVGLVGLRLLLRVISPDFVPPEWIMISLIAVLFAWGFSKRNDREPIESDTVQSDKLP
>AP019314.1|BBH41762.1|4629293_4630481_+|transposase
MEKAYSFRFYPTPTQESLLRRTLGCVRLVYNKALHVRTQAWYERQEKVGYAQTSSMLTHWKKQEELNFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDKQIYLAKCTEPLPIRWSRKIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSLVITSDGDKVSNLKHFKRHYRRLRKAQKSLSRKQKGSKNREKARIKVAKIHAQITDSRKDHLHKLTTQLVRENQTIVVENLAVKNMVKSPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIVEKMPLNVREWDCPDCGTHHDRDVNASKNILAAGLAVSVCRATIRPEQSKSVKAGAEPRKGKKQKPKS
>AP019314.1|BBH41772.1|4642980_4643556_-|hypothetical-protein
MFPPQALRELIANALIHQDFLATGASVMIEMYDDRVEISNPGIPFIKVERFIDEYRSRNEQLADIMRRFGICEEKGSGIDKVISAAEKFQLPAPDFRVGEIRTTSILFAHQDFGKMSQSDRIRACYQHCCLLYVDNQRMSNQTLRNRFCLNESKNNTVSQVIGATKEAGLIKLDESESKSTRYARYLPFWA
>AP019314.1|BBH41773.1|4643828_4644617_-|hypothetical-protein
MINLETLEGWLNAPVENERLEFKQAKNQFDTIKLLKYCVALANEGGGHFILGVTDKRPRKIVGSQAFPTPEEINSIKSLIVQKLRLRVEITELAHPDGRVLVFEVPTRPTGQPIAFEGAYLMRAGEDLVPMTPDLLKRIFAEDQQDWFCQPARSHASPDEVIDLLDTQTYFELLKLPYPSHRDAVLERLQGDQLLQKTPQGWTIPNLSAILLARQLESFSPTLARKAPRVIIYEGTGKIKTRLEQTGTKGYAVGFDGLVRVC
>AP019314.1|BBH41774.1|4644756_4645008_+|hypothetical-protein
MVIIEITNVEEILSAKIGSFAAKIVQALADDEGKVEEVLIKELQANFQERGIKANLFSVTGLDMLGNGRLEVNVNVRSANMMS
>AP019314.1|BBH41775.1|4645100_4646264_-|ferrochelatase
MGRVGVLLLNLGGPERLEDVRPFLFNLFSDPEIIRLPIKGLQKPLAWLISTLRASKSQENYRQIGGGSPLLKITEAQATALQQRLKEMGREVSVYIGMRYWNPFTEEAIERIKRDHIKKLVILPLYPQFSISTSGSSFRVLEEMWQQDPYLRLTEYTLIPSWYDHPTYLSAMADLIARELEQCPNPDQVHIFFSAHGVPQSYVEEAGDPYQRQIEECTRAIMRTLNRPNQYTLAYQSRVGPVEWLKPYTEDALKELGEQGIKHLLVVPISFVSEHIETLQEIDIEYREVAEEAGIEHFQRVPALNTHPMFIESLSQLVVKSLEEKPTTFEQITHPKANMKMYPQERWEWGMTTAAEVWNGRLAMIGFLAIIIELITGQGPLHFVGLL
>AP019314.1|BBH41776.1|4646383_4647007_+|methyltransferase
MATILRPLSYQYQWLYDGISRLAALAVGGETRFRQLALEGLKIAKNDPILDLCCGAGQTTRYLVPLSDRCTGLDVSPVALERASLAVPQAHYVEGLAEKMPFNAGEFAFVHTSAALHEMEPEQLEEILKEVYRVLRPGGIFALVDFHRPTNPLFWPSLALFLQLFETHTAWQFIDRDLIQSLQALGFRDCQQKLYAGGSLQVIQAAK
>AP019314.1|BBH41777.1|4647106_4647661_+|HAD-superfamily-hydrolase
MTRAKILQPDLILGDTILGLSLEILSQHQIKGLILDVDDTLVPLQETTVSDDLQRWVDSLRLYLPIWLVSNNLSENRIGAIADNLQLPYLLGAVKPSRRKLRQAMAAMSLPPQQIAMVGDRLFTDVLAGNRLGMFTILVKPMVNPLTGGAAYPIHDFEVWISQILGVSLHPQHYLIKPDQSSQK
>AP019314.1|BBH41778.1|4647913_4648669_+|putative-methyltransferase
MNRDSSLLSSSSVAEFKRNSFDLESHLQNFLQLDQEILQAKLAIAKDSLAALAHQEFSWTNPDYFYQEQVKENYLFELSAWHLSSQEYIGETLRLIDDHGSGKVLDFGGGIGTHALAAAMNSGVEQVIYCDLNPLHHEFVRFRAEQLNLDTNKLSFYTEIPERLKFDTIICLDVIEHLPSPTAQLKKFYDWLNPGGKLIINWYFFKGFNQEYPFHIDDPKIIESFFQTLQKDFLEIFHPYHITVRCYRKNQ
>AP019314.1|BBH41779.1|4648727_4649516_+|hypothetical-protein
MTLDIIPEGEERKVEAVSSAAIDGAPIAYIVVLAAIVTTLSFIPFSIVLASGGSMPLSQAVFPLLGWLLGPIAGAIASGIGSLIGAFLAPYTAGIPAISVFGAIIASFVAGTMVLGKKRRYWWLGLTLIFLIPLFIYANRAIGLNGISPRIFIAGAFVDWSALVLFILPTRTLFTHWIKGSNLALVAAGIFGGTWTASGLSHLGAVAITYSIFNWPEEVWIALIPIIPVENLIRSFVGMVIGCGVIAGLRAIGLVKSREAIY
>AP019314.1|BBH41780.1|4649640_4650633_-|ketol-acid-reductoisomerase
MARMYYDEDANLDLLAGKTIAIIGYGSQGHAHALNLKDSGVNVIVGLYPGSKSAIKAKEAGIPVYDVAEAAKIADWIMILLPDEVQKTIYLNEIAPNLSAGKVLSFAHGFNIHFGQVVPPANVDVVMVAPKGPGHLVRRTYEQGQGVPCLFAVYQDATGQARDRAMAYAKGIGGTRAGVLETTFREETETDLFGEQAVLCGGLSALIKAGFETLVEAGYQPELAYFECLHEVKLIVDLIVEGGLAKMRDSISNTAEYGDYTRGPRVVTEATKAEMRKILGEIQSGQFAREFVLENQAGKPGFTAMRRQEAEHSIEEVGQDLRAMMSWLKR
>AP019314.1|BBH41781.1|4651144_4652260_+|type-IV-pilus-assembly-protein-PilM
MVSFFKKLLTKKPQGVGLEITPERINIAQIAKQGQNYKLVKCCSSDIPEGIFEEGKIVDSPALAELIQEVLKENKINSKRVATAVPMRESIIRIIPIPSELDDQELRNLVLNHEASLYLPYPREEVDLDYQKLGYFQDEDGIEKVQVLLVATRREITDAYMETFQQAGLQVDVLEINSFALIRTIREHLRQFSSNEAAVIVDIEFDNTEIAIVVDGVPQFSRTVPIGTFQLQNALSRAMNLPTSRSPEILLGMTIPITAFDSLSSNTGTSGAPTNAGMTALMRVLGELTDELRRSINFYLNQSDELEIVQLLLAGPGGGLAQLDEYFTQRLSVPTMAIDPITSLNLDTTQEIPNTERPGLGTVLGLGLREV

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Crispr_ID: AP019314_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_30

4786733-4786829

Orphan

Consensus_repeat	Method
AATAAAATTTTCCCAAGCTCTCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_30

>merge|AP019314|30|4786733-4786829|CRISPRCasFinder
AATAAAATTTTCCCAAGCTCTCAGACGAGGTTTTCCCCCCGTATCTCTTACCTAAGACAGAGGCTGTCAAAGAATAAAATTTTCCCAAGCTCTCAGA

>AP019314|30|30|4786733-4786829|CRISPRCasFinder
AATAAAATTTTCCCAAGCTCTCAGA	CGAGGTTTTCCCCCCGTATCTCTTACCTAAGACAGAGGCTGTCAAAG
AATAAAATTTTCCCAAGCTCTCAGA

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH41903.1\|4775328_4778187_-\|isoleucyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235588
AP019314.1\|BBH41914.1\|4790996_4791689_+\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
AP019314.1\|BBH41913.1\|4789821_4790586_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
AP019314.1\|BBH41910.1\|4786887_4787610_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|376480
AP019314.1\|BBH41918.1\|4793871_4794480_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372238
AP019314.1\|BBH41902.1\|4774790_4775225_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH41911.1\|4787855_4788482_+\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224630
AP019314.1\|BBH41900.1\|4772183_4773338_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377008
AP019314.1\|BBH41912.1\|4788655_4789903_+\|putative-peptidase	unknown	unknown	gnl\|CDD\|100085
AP019314.1\|BBH41907.1\|4782157_4783654_-\|transposase	unknown	unknown	gnl\|CDD\|290319
AP019314.1\|BBH41917.1\|4793008_4793665_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226983
AP019314.1\|BBH41908.1\|4784174_4784966_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
AP019314.1\|BBH41904.1\|4778396_4778969_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
AP019314.1\|BBH41919.1\|4794914_4795688_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275017
AP019314.1\|BBH41915.1\|4791675_4792467_-\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|223257
AP019314.1\|BBH41905.1\|4779469_4780201_-\|undecaprenyl-phosphate-galactose-phosphotransferase	unknown	unknown	gnl\|CDD\|376775
AP019314.1\|BBH41901.1\|4773568_4774780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224113
AP019314.1\|BBH41906.1\|4780806_4781667_-\|transposase	unknown	unknown	gnl\|CDD\|227720
AP019314.1\|BBH41916.1\|4792612_4793002_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|275387
AP019314.1\|BBH41909.1\|4785025_4786123_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379519

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH41903.1\|4775328_4778187_-\|isoleucyl-tRNA-synthetase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
AP019314.1\|BBH41914.1\|4790996_4791689_+\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	9.74014e-127
AP019314.1\|BBH41913.1\|4789821_4790586_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.62346e-32
AP019314.1\|BBH41910.1\|4786887_4787610_+\|6-phosphogluconolactonase	gnl\|CDD\|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	4.27852e-96
AP019314.1\|BBH41918.1\|4793871_4794480_-\|hypothetical-protein	gnl\|CDD\|372238	pfam12644, DUF3782, Protein of unknown function (DUF3782). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.	0.000680945
AP019314.1\|BBH41917.1\|4793008_4793665_-\|hypothetical-protein	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	6.91121e-14
AP019314.1\|BBH41900.1\|4772183_4773338_-\|hypothetical-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	2.10924e-21
AP019314.1\|BBH41911.1\|4787855_4788482_+\|FHA-domain-containing-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	3.01548e-16
AP019314.1\|BBH41912.1\|4788655_4789903_+\|putative-peptidase	gnl\|CDD\|100085	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.	7.45134e-77
AP019314.1\|BBH41907.1\|4782157_4783654_-\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.64282e-34
AP019314.1\|BBH41908.1\|4784174_4784966_-\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	0.00193294
AP019314.1\|BBH41904.1\|4778396_4778969_+\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.62321e-42
AP019314.1\|BBH41919.1\|4794914_4795688_+\|hypothetical-protein	gnl\|CDD\|275017	TIGR04155, hypothetical_protein, PEP-CTERM protein sorting domain, cyanobacterial subclass. This domain model describes a subclass with family TIGR02595 of PEP-CTERM protein sorting signals associated with bacterial exosortases. This subclass is restricted to Cyanobacteria, including the genera Cyanothece, Nostoc, Trichodesmium, Lyngbya, Arthospira, etc. This PEP-CTERM subclass features strongly conserved residues within the transmembrane region, including a Gx4GxG motif. Model TIGR03763 describes a corresponding cyanobacterial form of exosortase found in most species with this domain.	0.00534952
AP019314.1\|BBH41915.1\|4791675_4792467_-\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	7.67704e-102
AP019314.1\|BBH41905.1\|4779469_4780201_-\|undecaprenyl-phosphate-galactose-phosphotransferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.71781e-93
AP019314.1\|BBH41901.1\|4773568_4774780_-\|hypothetical-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	6.1587e-11
AP019314.1\|BBH41906.1\|4780806_4781667_-\|transposase	gnl\|CDD\|227720	COG5433, COG5433, Transposase [DNA replication, recombination, and repair].	4.31861e-05
AP019314.1\|BBH41916.1\|4792612_4793002_+\|30S-ribosomal-protein-S6	gnl\|CDD\|275387	cd15487, bS6_chloro_cyano, 30S ribosomal protein S6 of chloroplasts and cyanobacteria. bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Mitochondrial and chloroplastic ribosomes are similar to bacterial ribosomes. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.	4.18272e-52
AP019314.1\|BBH41909.1\|4785025_4786123_-\|hypothetical-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	7.46852e-71

>AP019314.1|BBH41909.1|4785025_4786123_-|hypothetical-protein
MARVPVISKDGKSLMPTKPSRARRWIKEGKAIGKFNDLGIFYVQLIDEPSDTKTQPIAIGIDPGKLFSGIGVQSSLFTLWKAHLELPFKRVKERLDNRRLMRRGRRKRRINRQLSFNLRAHRQKRFSNRKQGKLAPSIRANRQLELRVVSELTKIYPITDIYFEYVKADVDLTSGRKGAKSGKGFSSVMVGQKWAIEQLSQLATVHTRFGWQTSNLRKYLGLEKSKNKAEQSPESHANDGIALACFQFLDYWPFHNYNGHGYDWKGSVKVTNAPFAVIKRPPISRRQLHLMVFSKGGKRRKYGGSTTGHGFRKGDLVSSPKGIGYVSGDTEKQLSVSDTNGQRLGQIAVSKIQLIRRSNGLIVSH
>AP019314.1|BBH41908.1|4784174_4784966_-|hypothetical-protein
MNSFTSLSLKLTGLVFIISFLLDGFILPLPYRFSQSQWQVGFVTTFVDRGIVPLLGIVLVLIAYWIDANNRDVIPRKSRFELRWPIFILSTLLGLVFLLMIPVHINNINQIKNNALTQIEQGVDQGEGQIQAFLAQLNTLSQNPQLLEQQISQRTQVIETGRFQGQPINTEQLQTLRQQREQLTNLRDLSKKPKEFKQRLDEIKNQLQTQLQDRRKQAESQANLEALKQWLRIGIQSMLLSICYSLIGWLGIRELGSMKKRTA
>AP019314.1|BBH41907.1|4782157_4783654_-|transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGAPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSAYSNEPQFEASMLVHFRERITRELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETIKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>AP019314.1|BBH41906.1|4780806_4781667_-|transposase
MGVEWQILLKMFKEWALQEYGQRSDINWLDIDGKSLKNTLKNPNNEQQNFIMFISLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCTLQNKVFTGDALHCQKKTISLIAKSKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRIIKVERRGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>AP019314.1|BBH41905.1|4779469_4780201_-|undecaprenyl-phosphate-galactose-phosphotransferase
MTANSQLISVKALQALMKRGFKPSVSGRRHQKSWLIALDGDTSKRLFDIVFSLSVLIFFSPLYLILALLIAISSPGPVFYVQKRVGQNFQHFNCIKFRTMVMDADKVLERLMEDSPQLRAEFEDNFKLKDDPRITWIGKFLRLTSLDEFPQFWNVLRGDMSVVGPRPLVPEELQKYGNRIDKVLTIRPGLTGLWQVSGRNDIPYPLRVQMDVYYVNSRNWLTDIWVIFRTIGVVVFPKNNGAY
>AP019314.1|BBH41904.1|4778396_4778969_+|hypothetical-protein
MVTNPNFFYVSPEVYLEGERVSPIKHEYRKGQIYAMVGAKKPHIVLSANLAKVLGNHLDDSPCLVLTSDIKVRLEEANCYYYPDIAVVCDEREINNTDDFILYPVLIIEVLSKSTESFDRGDKFSDYQTCPTLKEYILIHQNQMKIECHRREDSGIWKEQIYEAGDAVEFTTVGFRGSIASIYRKVPGLV
>AP019314.1|BBH41903.1|4775328_4778187_-|isoleucyl-tRNA-synthetase
MSNAKSYKDTVNLPQTDFDMRANASKREPEIQKFWQDEQIYEKLAQNNPKELFILHDGPPYANGSLHIGHALNKILKDIINKYKLLQGYKVRYVPGWDCHGLPIELKVLQSLKSSEKEGLTPVKLRQKAHDFALQTQKEQCEGFKRYGVWGDWENPYLTLQPEYEAAQIAVFGKMALKGYIYRGLKPVHWSPSSQTALAEAELEYPEGHTSRSVYVAFPITSVSTPVLRPFLPNLSVAIWTTTPWTLPGNLAVALNPELNYSVVETSESNYLIVATDLVEKLADTFNRTLTIKATVKGLELEHTKYRHPLFDRESAILIGGDYVTTDSGTGLVHTAPGHGQEDYIVGQRYGLPILSPVDDKGNFTAEAGQFAGLNVLKDANEAIILALTEKGALLKEEAYQHKYPYDWRTKKPTIFRATEQWFASVEGFRELALEAIDSVRWIPATGKNRITSMVSERSDWCISRQRSWGVPIPVFYDEETNEPLLTEETINHVQAIFGVKGSNAWWELSVEELLPPSYRNNGRSYRKGMDTMDVWFDSGSSWNAVANARPELSYPADMYLEGSDQHRGWFQSSLLTSVAANGIAPYKTVLTHGFVLDEQGRKMSKSLGNVIDPNVIINGGKDQKKEPAYGVDVIRLWVSSVDYTNDVNIGQNILKQLVDIRNKIRNTARFLLGSLNDFDPVKDAVAYEELPEIDRYMLHRISEVFTEVTAAFESFQFFRFFQTVQNFCVVDLSNFYIDIAKDRLYISDPNSFRRRSCQTVYAIALENLAKAIAPVLSHLAEDIWQFLPYKTPYLSVFESGWLNIDPAWNNRELADKWAKFRQLRTEVNKVMETARNDKAIGASLEAKVLLYVADESLQQELELFNNCDSLTGNKVDELRYLFLSSQVELVSDISAIQTAEYKGESDFVSVGIVKADGEKCDRCWNYSTQVGKFADDPTICERCNAALKGEF
>AP019314.1|BBH41902.1|4774790_4775225_-|hypothetical-protein
MEDYQSAFLQRHQDTEILCKSNRKIAAMHFGGITIECLLKSMILASVSSQEWKTKSNNPGHTITNPGHSLTAALKSNNRLYSRVQNYPDVIKWINIVEKPVENPSQNFIDMRYSSSEPNDDKYKEWLSAYTGLKQWLQKQATQL
>AP019314.1|BBH41901.1|4773568_4774780_-|hypothetical-protein
MSETWLRSLKQKLTDIYVQKEAQEWVDLNVSTAGLLNITIVSDKFENLSTTQRREAVTNDIEQQHKFLGFISLYTIQEAASLDLKAPQLLDAKSIHTWQDLALWSANPQNQSPSSPELCLPRTVTFYSFKGGVGRTTALIHVAWILAMRGRKVVAVDLDLEAPGLSTAFPLNPLPEYGIVDYFYEKSYLPEGVEAKINITKIFGEVNIPDATGRLFIVPAGYLSLDYIAKVDDLRATTILDNGETLWSTFSREIQNQLKPDLILVDSCTGINEWGALSLLQAANEAIIFLFPNEQNQKGIELLLQSLTSFGRLSLNFVFSPVPDLSDTGITKVTHAWQILQKDIDKNIDIDETTDHDLDIDSEDYLIIPYIPSIALADRYPVTGLLDYYARIANLIDEDTNFQ
>AP019314.1|BBH41900.1|4772183_4773338_-|hypothetical-protein
MRFIFELAILRGIKIMVNYLTQEEKLLAAEEEKYLEEEDDVDFPPADIIAYNEQRSCSDLVRMYQKKQLVIDPDFQRDVVWTDPQQTRFIDSLMKQLPIPSMCISLDYKTDKRYIIDGLQRINTIVKFLTTEDWKLSKLADVDSSISGRTVEEIKTQHEELYERVENMTIPITVIRYDSSKKAHNNYIFTIFHRLNTGGVKLNNQEIRNCIYNGEFNSFLKKCAQYENWLLLMDRKQQKASRFEDEELVLRFFAFYDEYQNYKGKLTRFLNDYMYKHRFAHEDFIQDKDKLFKQTVDLIYDRIFKEEPLKTSKVIAEGILLGVAKNLDTLVNLSNGELQDKYSRLIKSEPFLTKNLASGIYQKDKALERINTSIKIFSSTGNDY
>AP019314.1|BBH41910.1|4786887_4787610_+|6-phosphogluconolactonase
MQKLVEVLADKQALIAKSLALVLEKITTSLDQQDYFTIALSGGSTPKPLYEALSSQPLDWSKIHVFWGDERYVSPDHPDSNQRMARLAWLDRIPIPAANIHPVPTDDPDPQLAAQKYDDHLRQWFGVNSPDFPVFDLILLGMGDDGHTASLFPHTAALTVSDRCITVGEKDGNPRLTFTVPLINQARCVIFIAAGESKRPALHEIFSAYGDSFSYPSRLIHPSAGELYWLLDAAAGSSFV
>AP019314.1|BBH41911.1|4787855_4788482_+|FHA-domain-containing-protein
MIVCPNCEHTNPDEASQCEACYTPLPRMSSCPSCGATIQTDATFCGQCGYNLQPNSVPMVAAQPESEPEPVPPVPTPTVASIAPPPVAPPPVRAATRLQTEIASLQHLQTDSKIELPLHLSVIHIGKPNDRIPPDIDVSGFPDSDIVSRVHGDIRVEAGLYYLEDSGSANGTYVNHTPLPPGNRHRLRAGDRISLGKGDKMTFIFQMS
>AP019314.1|BBH41912.1|4788655_4789903_+|putative-peptidase
MRTNWRIGSLLGIPLYIDSSWFLILAFVTLINATDAEIQSLAAQSSVLAWLLGLIIALLLFISVLLHELGHSLMARCQGIEVNSITLFLFGGMASINRESRTPPEALQVAIAGPLVSFLLFCLLSLASHLPYLNANLTYICGHLAIINLFLALFNLIPGLPLDGGQIFKAMVWQATGDRWKGLHWAAISGQFIGWLGIILGIFLVLLTADVGGAWLGLMGWFILRNARAYDNLTNLQESLLNFTAGEVMSRDLRVLNAHQTLQEFAQEYVLDRAAANTAYFAASEGRYRGLIRVEDLQAIERSLWSEKQLLDIAHPLTEIPSVEEKTPLVTVVQKLETIQDPMITVLTPASAVAGVIDRGDILKAIAIKYQIPLEETDIERAREGVYPSYLPLNVIAAALDKSEPPKIGEPSLMS
>AP019314.1|BBH41913.1|4789821_4790586_-|serine/threonine-protein-phosphatase
MRTLAIGDIHGCSKALDHLLEIVNPKPQDTLITLGDYVNKGRDSKGVIDRLISLHKQGNLIPLKGNHEIIMLQARNNPLKQRLWLEKGGKATLKSYSEGHLIKIPESHWDFLGKVCINSYETANHLFVHASLDPHLPLARQPEYKLFWEKFQYPAAHSSGKTMICGHTSQKSGKPINLGHAICIDTWAYGQGWLSCLDVETGKLWQVNQRGNFRISHIQDYYLPSSLRQDIKDGSPIFGGSLLSRAAAITFKGK
>AP019314.1|BBH41914.1|4790996_4791689_+|triosephosphate-isomerase
MHKTQREALEFLQDFKSHLEETPDDREVVLCAPFTALAVLSKTLHGGRIRLGAQNVHWEKSGAYTGEISADMLTEIGVHYVVIGHSERRQYFGETDETVNLRVISAQKQGLIPIICVGESKAQRDAGETEKVIIKQIQGGLVNVDQKNLVIAYEPIWAIGTGETCESEEANRVIGLIRQQLDNPEVTIQYGGSVKPDNIDEIMAQSQINGALVGGASLDPAVFARIVNYR
>AP019314.1|BBH41915.1|4791675_4792467_-|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase
MAQRYVRVKHLQGQIFYGLLQLNRSVAVFDAPPWQGGQLTKLELEPDSYQLLAPCFPSKIIAVGKNYRAHAAEMGTPVPEEPLLFLKPPTTIIADGETIFYPPQSERVDYEGELALIIGETAKNCTTAQARSKIWGYTIANDVTARDLQKKDSQWTRAKGFDSFCPLGPWIVRELSIGAQLTTFLNDGSEPKQSSYLSDMVFPPDVLVAYISQVMTLLPGDVILTGTPEGIGPMQVGDQVRVEIEGIGVLENSVMAAASISDN
>AP019314.1|BBH41916.1|4792612_4793002_+|30S-ribosomal-protein-S6
MSNNYETLYILRPDLGEEVVQQQVERYRTLITEHSATDIQVKVWGKKRLAYPIKKLNDGVYVQMNYQASGKQVAPMERAMRLSDEVIRYLTLKLDRVVAPPADLSPLTEIPPSPITEAVVEDDGISAED
>AP019314.1|BBH41917.1|4793008_4793665_-|hypothetical-protein
MVQAPIEPQLFYPDSDGKPMADNTVQYRWIVRLVANLRYLFKDQTVFVAGDLLWYPQQVTVPPAPRQAPDAMVVFGRPPGERGSYKQWEEDNIAPQVVFEILSPSNSAREMLKKQSFYREHGVLEMFFYDPDSHDFWGLVRPNQQEDFFPVTALNFPWTSPILGIRFEMFEEGLEVFYPDGERFKDPETLFEERNQAQQERNRAFARLRELGIDPTQL
>AP019314.1|BBH41918.1|4793871_4794480_-|hypothetical-protein
MATTSEDVWRLLAELATAQKETDKQLKETDLLLKEVSQQQQENAQQQKKTDKQLKELGQQIGGLGAKFGSFTEGLALPSMEKILRQRFGMEVISPSVRVSKEGQHLEIDVFAYTNGELNTAYIVEVKSHAREESISQLKSILQRFRRFFPEHKDKKLYGILAAVHLSPELREKILQEGLYVARIHDQVFELDIPDNFQPRLY
>AP019314.1|BBH41919.1|4794914_4795688_+|hypothetical-protein
MALHFGVNAPASQIGGLGYFPGGTPFTSGVLSSVVLPPGGGFTVVDTQFSVPFSLDVDQPASLYMGIGDNGIGGPQGGSIQVIFDFSDNIYFGGSILGFTPDQGFALTSVTLADGTPLEDAGLKFDFIPENTLLTAGASAFDDTGSGLVTNSVVATTNPANRAAVFVFPGTATSKLQGGPDVGGLPTNSLVDLDVNPEPDPFVFDLAFATVSGANNIKLTRISQPTSTPEPSTILGLGLLGLGAFCQRKLSQGKKSK

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Crispr_ID: AP019314_32

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_32

4997424-4997504

Orphan

Consensus_repeat	Method
AATCCGTCGTAACGCACCACCTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019314_32

>merge|AP019314|32|4997424-4997504|CRISPRCasFinder
AATCCGTCGTAACGCACCACCTATCATCAACTAAGTAGTAAAACGTAGAAAGTAAAAATCCGTCGTAAAGCACCACCTATC

>AP019314|32|32|4997424-4997504|CRISPRCasFinder
AATCCGTCGTAACGCACCACCTATC	ATCAACTAAGTAGTAAAACGTAGAAAGTAAA
AATCCGTCGTAAAGCACCACCTATC

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH42075.1\|4992024_4993185_-\|2,3-diketo-5-methylthiopentyl-1-phosphate-enolase	unknown	unknown	gnl\|CDD\|173974
AP019314.1\|BBH42086.1\|5004675_5005746_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42085.1\|5003871_5004621_-\|unknown-protein	unknown	unknown	gnl\|CDD\|273628
AP019314.1\|BBH42078.1\|4995500_4996004_-\|transposase	unknown	unknown	gnl\|CDD\|379267
AP019314.1\|BBH42074.1\|4990464_4991748_+\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
AP019314.1\|BBH42072.1\|4988449_4989412_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|223928
AP019314.1\|BBH42080.1\|4996816_4997320_-\|transposase	unknown	unknown	gnl\|CDD\|379267
AP019314.1\|BBH42083.1\|4999740_5000616_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371375
AP019314.1\|BBH42077.1\|4994826_4995573_-\|transposase	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH42079.1\|4996142_4996889_-\|transposase	unknown	unknown	gnl\|CDD\|315923
AP019314.1\|BBH42076.1\|4993506_4994625_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238905
AP019314.1\|BBH42081.1\|4997544_4999062_-\|putative-methyltransferase	unknown	unknown	gnl\|CDD\|378402
AP019314.1\|BBH42090.1\|5011495_5014558_-\|unknown-protein	unknown	unknown	gnl\|CDD\|273628
AP019314.1\|BBH42073.1\|4989538_4990141_-\|probable-peptidase	unknown	unknown	gnl\|CDD\|366703
AP019314.1\|BBH42087.1\|5006413_5007541_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42088.1\|5009124_5009472_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42071.1\|4987878_4988388_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224317
AP019314.1\|BBH42089.1\|5010043_5011471_-\|unknown-protein	unknown	unknown	gnl\|CDD\|273628
AP019314.1\|BBH42084.1\|5000852_5003564_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369942
AP019314.1\|BBH42082.1\|4999347_4999719_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH42075.1\|4992024_4993185_-\|2,3-diketo-5-methylthiopentyl-1-phosphate-enolase	gnl\|CDD\|173974	cd08209, RLP_DK-MTP-1-P-enolase, 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.	0
AP019314.1\|BBH42085.1\|5003871_5004621_-\|unknown-protein	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	5.49363e-36
AP019314.1\|BBH42078.1\|4995500_4996004_-\|transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	5.32211e-08
AP019314.1\|BBH42074.1\|4990464_4991748_+\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
AP019314.1\|BBH42072.1\|4988449_4989412_-\|glycosyl-transferase	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.9635e-45
AP019314.1\|BBH42080.1\|4996816_4997320_-\|transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	5.32211e-08
AP019314.1\|BBH42083.1\|4999740_5000616_+\|hypothetical-protein	gnl\|CDD\|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	1.27996e-97
AP019314.1\|BBH42077.1\|4994826_4995573_-\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.98571e-20
AP019314.1\|BBH42079.1\|4996142_4996889_-\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.98571e-20
AP019314.1\|BBH42076.1\|4993506_4994625_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238905	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.	4.71039e-79
AP019314.1\|BBH42081.1\|4997544_4999062_-\|putative-methyltransferase	gnl\|CDD\|378402	pfam10119, MethyTransf_Reg, Predicted methyltransferase regulatory domain. Members of this family of domains are found in various prokaryotic methyltransferases, where they regulate the activity of the methyltransferase domain.	5.88563e-36
AP019314.1\|BBH42090.1\|5011495_5014558_-\|unknown-protein	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	1.06281e-27
AP019314.1\|BBH42073.1\|4989538_4990141_-\|probable-peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.15645e-18
AP019314.1\|BBH42071.1\|4987878_4988388_+\|hypothetical-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	2.14506e-23
AP019314.1\|BBH42089.1\|5010043_5011471_-\|unknown-protein	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	2.51091e-19
AP019314.1\|BBH42084.1\|5000852_5003564_-\|hypothetical-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	3.17398e-07
AP019314.1\|BBH42082.1\|4999347_4999719_+\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	7.6143e-07

>AP019314.1|BBH42080.1|4996816_4997320_-|transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKTNYALGKPKDTVFRNRI
>AP019314.1|BBH42079.1|4996142_4996889_-|transposase
MAYSKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>AP019314.1|BBH42078.1|4995500_4996004_-|transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKTNYALGKPKDTVFRNRI
>AP019314.1|BBH42077.1|4994826_4995573_-|transposase
MAYSKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>AP019314.1|BBH42076.1|4993506_4994625_+|peptidyl-prolyl-cis-trans-isomerase
MKIKTRLRESGKFFLKSGASIALALFLILSLFTAKGTAPALAVLAQGDAVTDPTAILRNALPIDNKPIRQVQQSIEDIAKHLRAKRWSPIKKDVKDANYALSTKSKAILDSVPEASKSQGEELIEKLKTGVAALDTAVEAKDKEAVWSTRRELLNNITALEELMVVGFPFNVPPEYANLPQLRGRATVEMQTTKGDLTIVVDGYSTPVNGGNFVDLVQRGFYDGLPFIRSEDNFVVQTGDPVGAEEGFIDPKTKQYRSIPLEILIKGEEEPVYGNTLEELGIYLPSLALPFNAFGALALARPDTNPNGGSSQFFFFKFDNELTPPGFNLMDGRYSVFGYLVEGKEVLEELTDKDKIITAKVVYGLNNLVQPS
>AP019314.1|BBH42075.1|4992024_4993185_-|2,3-diketo-5-methylthiopentyl-1-phosphate-enolase
MTIIVDYRFPPAINAEKQAKMIAIGQTAGTWSERHSHRQEQLQQHLGEVVGIREEADGYKVARVRFPQINVENDIASLLTMIFGKYSMAGAGKVVGVYLPESYGTKAKVGITGIRQRLGVYDRPLVMAIFKPALGLSAQDHADILREVAFAGLDVIKDDEIMADLPVAPTHERLDCCRLVLEEVRQQTGRNVLYAVNVTGKADELQRKARLLVKHGANALLLNVLTYGFSVLEALASDPAIDVPIFAHPAFAGAMCAGTDTGLAYSVVLGTMMAHAGADAVLYPAAYGSLPFDPQEEGKIRDILRNRNVFPVPSAGIRPGIVPQVLRDYGRNVILNAGTGIMDHPSGPASGVRAFFEALARIEAGDSFDPANLPEGALKQAILEWG
>AP019314.1|BBH42074.1|4990464_4991748_+|seryl-tRNA-synthetase
MLDLKQIRENPEEVQKRLDSRGGSYDIAPILQLNQQQKALELERSSLQGRGNEIGKLVGQKVKSGSDANSPEILVLKTEGNEIKSKLAQLEPQEKAIKAAIDQKILDLPNLPSETTPIGKDERENVEVRRWGEEYKPTNPNILPHWEIGEKLGILDFERAVKIAQSRFVNLIALGAALERALINFMLDRHIVAGYTEVLPPILINSDSLRGTGQLPKFAEESFKCRDDELWLAPTAEVPVTNLYRDEILSSEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVEMVKIVHPDASAGEHESLVANAEAILQALQLPYRVIELCSGDLGFSAAKCYDLEVWLPSANTYREISSCSNFRDFQARRANIRFKEKGQKGTNFVHTLNGSGLAIGRTMAAILENYQQPDGTVKVPEVLQPYLKREVIC
>AP019314.1|BBH42073.1|4989538_4990141_-|probable-peptidase
MLKYLPVKFLRFLAISCLVTLISLGFDRLHPVKANPTLIAQNAWAGASFPVENFQTYTSGFGYRSSPMDGSQQFHAGLDLAAPLGSYIRNWWAGRIVELSDHTGCGTMIKMQSGQWTHIYCHLMGSVQSDSRGTFLIDMEGGIVLTLGQDIPAGARMARVGMSGRTTGPHLHWGLMYGNQYVDPALVLNAMYGSNPSGNS
>AP019314.1|BBH42072.1|4988449_4989412_-|glycosyl-transferase
MRILTLVPGGISDQLLFFPTLETLRQTYPQGTIDVLVEPRAKAAYRLCPQVKEVLLFDYRDQYGLADYLNILGVIRDREYEIAISLTNRPAINLLLWLNGVPNRIGYENNGSWFLSQQVPRPTEGYLADNYQALVKGLKIAPPCPPLKLTLNRDDIDWAEMEQQRLNIKDSGYILLYAGGSDLSISQGLETLYPLESWLEIIQGIRHQQPDLPIVAIEGELDEAWVLALKAMDNNLKVSRTADIGKMAAMIAGANLLLATESVPLQLAVAVGTYTLSLLVPSLSKRVLPSGGERHRYIEANTGKVADITPETVLKKIWGR
>AP019314.1|BBH42071.1|4987878_4988388_+|hypothetical-protein
METIFIPHLLKSPDRQRVIIIDNFIPGLETLTPVRGTLLVRHGGNFLEVSVKAETIVTLTCDRCLQQYNHRLQLNTSELIWLDKNKDYDHSYPLEREIAYEDLSETLDPNGDFDPQMWLYEQLCLTLPPRQLCGANCQPPDFFLPENTAIDGRWASLESLKSQLSQSQN
>AP019314.1|BBH42081.1|4997544_4999062_-|putative-methyltransferase
MSWTEGYVSEVNYTSGFYGELSPLKLGLATLIKSIQPPDSSQEFTYCELACGQGFTTNILAATYPHAQFYANDFNPSHIATARDLAAKAGMNNILFFDDSFEEFLERDLPQFDFISLHGIYSWISARNRQAIVDFIRRNLKVGGLVYISYNALPGWSAAMPMQALMLRHGQHSSESILTRIEQALNFTGELLEANASYFVQNPILKSRYERLKEQNRYYLAHEYFNQEWNSFYFDEVAKELEDAKLKYVGSAHINDHIDAVNLSPAAQEKLAKISDPIYREVVRDFFVNSQFRRDIFSRGSLGLTSQEQVKQLQETRFALIVNPAIIKFEHQFPVGEVKLQETVYQPICQVLAESPQTLLQLQNHPKTSNINLNGLYQALMILTGIGYIHPAVDEQTCQQRKPSTDAFNNAVKAKAVYSEELSFLASPLIGTGVVVNRLEQLFLLAKSSNQDAVQFVWQILASQGKKVVKDGKTLETEEENITHLKTVYEEFSKERLLTLQKLGI
>AP019314.1|BBH42082.1|4999347_4999719_+|hypothetical-protein
MFELSDLKQTRVYQEALAEGEKQGLERGLQEGLERGLERGLERGLERGLERGLERGLERGLERGLQEGKRLVVENLLRVRFGELDPPLQAIISRILQLSPEEFTPLLLHCSKQELLNQFGNCQ
>AP019314.1|BBH42083.1|4999740_5000616_+|hypothetical-protein
MKTDSLFYQIFLRFPDSFFDLIGQPQPGAANYQFTSQEVKQLSFRLDGLFMPLLEDIQQPLYLVEVQFQPDDTLYYRLFAELFLFLKQYQPPHPWQIVVIYPHRRVEREQSLHFGEILNLASVRRIYLDELPYRDNPSLGIGVIKLVVESETAAVRTAQTLIERTREEITDQSSQRQLINLIESIIIYKLPQKSREEIEAMFGLSDLKQTRVYQEALAEGEEQGLERGLQEGERLVVENLLRVRFGELDPPLQAIISRILQLSPEEFTPLLLQCSKQELLKRFPPEKSRGN
>AP019314.1|BBH42084.1|5000852_5003564_-|hypothetical-protein
MALLPSSALTFLNIAYFKAPVSPVSFNQANYSWVEAVQGWAAAASNPATFNSLTNGNPPTYGFLISPSTGNAEQYVLEVYENLFGSVPSAEHLAYWTNWLTDFGNEIYIGRDGTNYGIANYQALVLAVYEYSATADELAALTNRQEVSQYFSDSMQNNPSGSVPSFNTAQYNAGWASISTVTKDPASVTEAKASIDEFVATQGSIGNSFVLTPDVDIKSGNQFLAPPVAGSAGGVLNTFTSGDALTGTGTNPTLTILWQQTTTPITTVQPNLLKDISTLNATLVGAPLTVLSTFVTGLKTVNINDTTNDLTMTNLQSALETISISRSFNGADHTFTIADAALAGTEDALAIKLNQVVPGFSTAVPPVFSNTKLAVSNLSGTGGYEKVSVNSAGFDNTIEMAGVAGLKSLTITGDKALTLAGGTTSLANTVTLVDANSFNADLTVALVTPTGNLEFKGGLKNDTFTLNAAAGSHKLSGGTGKDNLTVAGNNTVEVSGGDDDDRITFINGFTTTDVVAGGAGVNTLAFATPANAEAITAENANITGIQTLALTTAGTAGATLRADFFGNDVNTVTLENGTVAAYTIRYNTGQNTLNIWGNTGTLNVQAEGAAITDALTLNIGNVNSLALIDLTVVNLALNNVERPIEKLTINSNKAATGHTITGAVTLPQSAEQNEAITITGDSTLTIGGVVTADKIDAAGMTGNAALVMNGNSAIAISITGSGGNDRLVGSALRDSISGGGGNDNITGGTAADTLTGGDGRDIFNQTAFDSVVASTTNGAAGTGFAAGQTITFAPIAGSPVANVDIIGGFVGGANGDTLNLDSGTPAVTGLGTANNALVAGTSYFLSGNFILGTGAFNITANGVGSDTLIIQGYAGAGTDIVTNTSSIVLLGLNSNNLVAGNII
>AP019314.1|BBH42085.1|5003871_5004621_-|unknown-protein
MSELAPHNPSLRADYQKHQDNLDDSVLQLDRQAFQRLANLGYHPSIVFDIGASDGVWSFYMKQVLPQANFHLFEPLIDHSPDYRQFMEETLRIYPSFSLHKYALGDRNSPVAMTVFDNILASSCLSVTPPDQETRLVEVPMLRLDEAMQQLNLPQPQVIKIDTQGNELSILKGATQTLAKVDVLLLECWLYRGYGPETPLLTEIANWLLPFNFRLWDVTEPYRNPEGILASLDCVFVNTNASFPKNWYY
>AP019314.1|BBH42086.1|5004675_5005746_-|hypothetical-protein
MSLSKESYILFIPTIIALKIYLTAYFQQKSFQKIIQQYQKTLTLLMAIFILEMVYVLFFLGTNATGYAGVDEKSFQILSLVTTAWQLLNAGLIGITLLAIVSYWITNYCFKKQSFNGFLDQLKPYGFFLLIALIPQTFLYAKSGIVAAFYLFPFIVIACLLLAKTLSLIETSYRPLAIVIITFLSILLLSRLPLVWAMYGTFATDSRLMNELLTQTEICVNKEQPILIVANPKVRFEAVDSLQRVLRTQGHQRLILATYGLKDADFYSSKLADAEVYWSFLDTNILLKGYNHQTLLNFPDKMSIQSIIIFDGLEEDFKQTQKSWFSPDNYQSQSFDISFAHSTLYCKKHMGSDRAK
>AP019314.1|BBH42087.1|5006413_5007541_-|hypothetical-protein
MLTTILFLYLGLRKIAGESRISQLAPWEVLQKFLYQIIAGPIVVSGTFLLRPWQILSNLNVTYLIILLIATACFYVIITYLYEEQFKVSYHDFSSSFQITEIIRLLKLGLLMIVLAYPSAILLDVNIIDGRASRVHFPAVIGTTVVIGSLWNLLFLITYSQHFLRPIIKGILSTYLALLLAFSINVQHFYVLSWQYQQHFWQDILTLSPDITQNTVILVQSPNLQWGKQIHPFDWSVPSVLSSIYEFPKDWQFPPRAYILHSDPQNIEAWKGMIQSNGKMLISNKNHGVRYHYDWEPERLIQPQDVILLVEENKQLIRQPKLTLSDGRTIFFKQNDSRFSFPPFPETSLFSRLIPSTTITNDQKNSPAIYLEPQK
>AP019314.1|BBH42088.1|5009124_5009472_+|hypothetical-protein
MRIKIGKLLNLTVTAMLENKIINNSYNLDSSFILLLLSIYLRVKKTLINIKMLPDKSDDSEEISDVNKLSLIKKSNIENPKTLLNSIFFNNRDFKLDKDSRNVLAIIKPLIGLKL
>AP019314.1|BBH42089.1|5010043_5011471_-|unknown-protein
MIKQLLAKNKIVRRVKAVKDLFLEKLDSLSHVQLEQIQKLEKLEKLEKLNQLDPLDFKVEQLNNSTEQIRQENAETKRKADLSLENQAFLLKFSVDIVQGIQQFNQDSQQQQQAIYQVIEKIYQDSQQQQQAIYQAIEKIYQDSQQQQQAIYQAIEKIYQDSQQQQQAIYQTFQAFQEETRERFQLNQQLLSKVYEDIHNYKFKVVTNQSNFQGIEVELMCYLYSYLPYPSALDIGANQGDVTERLLQTGYEVYAFEPFLPVVEKLKNRLSNFSNLHVFPLALGAINEERELHLVGDQNLVNDPNSQPLYPDADYTLLSSINIHSLPEGMVFTETVPITVTTLETLHQQQQVPSEVGLVKIDTEGFDLQVIQGMGDCRYPVVVAEFWDEKFPFGEFGVDNRLPSLVEAMKLRGYHWFIVIYRVFPNNEVSFYCNHLISVGSSWGNIFFFQEHSVFSEALKWCSCVMPATYFSNAY
>AP019314.1|BBH42090.1|5011495_5014558_-|unknown-protein
MLTSYQELQKELSLSLQDLNSFADKFQESYDIIVSANEINENHGVGVLLKRIFPDTGRIVSLRTTNLYGGEHHFGVQNFCLDVRGCSYGEILLKIQNLFVYLKPKRVLVIPYFIEDFYVAIAIKSLFQVPVCTYLMDDQNVYVRAVADGIVKQLIDNSDLVLGISKPLCQAYSKKYERKIWFVPPLVESHLMPPEITAPDSMARGILIGNIWSQTWLENLRQLCRESQIKLDWYGNPNRQWLQFQEVELEQDGIFFKGYCSQDALIYYLRQAPFAIVPTASSENEQERPEFACLSLPSRIPFITAVANTPIIIVGREDSAAAQFVKEFDLGTVCDYKAQSLLAEIEKLRIESNQLRLRYSSQKLAKSLKADHFDDWLWRSLEQGKPIDNRFEQFEKNSLKCSVIVTASEVNQSHGTGALVRRIFPDDSEIISIRSDNHYGGEQQFGVLSFHLDHKKMSRPAIFQSILQTLGHHQVQKVFCVPYYASDILTAIAIKELFNVPLATYIMDDQNICVQEIPDALMGEFLSKCSVRFATHPELRNAYENKYGYKFWLLPAIVPHRLINSEVAEVSPQRCQEKWGALLGSIWSPQWFQSLLESIQGAGIKLDWYGNSNYYWLKESAAELEKWGLYSQGLYPEEQLAQQLQAYPFVIVPTGTMDERDDRTELSRLSLPGRIIFNLATANTPIILLGSNKTSAANFINRFQIGVVCDYTPESLAAAVDYVLDPENQQRMRENAVKVAAKFSDQDINDWVWQSLEKEQAADDRFEAILPRSPIDAVPFIEPPVPKKICKDYVPVYQVMRRLQGQGYQPDFVIDVGASHGIWSFTVSQLFPEARYLLIDPLTSQYEQFARDYFIGNIPKAELLEVAVSNEEGGLNLQVSADFYCSSLLNPADLRDYQPLEVVVTTIDRIAVERQISGRGILKIDVQYAEHLVLEGAKEFIAQVDLIIAELSVIRYDEESLVISEMIHWLDQLGFRYYDETGEWRSPIDGTLLQKEIVFIRQDLLVPETNREINQFPSKP

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Crispr_ID: AP019314_33

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_33

5479162-5479301

Orphan

Consensus_repeat	Method
ATCGGCACCCCCCTTATCAAGGG	CRISPRCasFinder

3 spacers

The CRISPR arrays of AP019314_33

>merge|AP019314|33|5479162-5479301|CRISPRCasFinder
TCAGATGCCCCCCTTATTAAGGGGGGATTAAGGGGGGATCGGCACCCCCCTTATCAAGGGTAGCTCCCCCCGCCTGCCTATCGGCACCCCCCTTATCAAGGGTAGCTCCCCCCGCCTATCGGCACCCCCCTTATCAAGGG

>AP019314|33|33|5479162-5479301|CRISPRCasFinder
TCAGATGCCCCCCTTATTAAGGG	GGGATTAAGGGGGG
ATCGGCACCCCCCTTATCAAGGG	TAGCTCCCCCCGCCTGCCT
ATCGGCACCCCCCTTATCAAGGG	TAGCTCCCCCCGCCT
ATCGGCACCCCCCTTATCAAGGG

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH42504.1\|5467141_5467939_-\|phosphate-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184588
AP019314.1\|BBH42520.1\|5483898_5484366_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|341362
AP019314.1\|BBH42523.1\|5486217_5487015_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376645
AP019314.1\|BBH42522.1\|5485165_5486014_+\|nicotinate-nucleotide-pyrophosphorylase	unknown	unknown	gnl\|CDD\|236017
AP019314.1\|BBH42519.1\|5483565_5483856_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
AP019314.1\|BBH42517.1\|5481091_5482144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225213
AP019314.1\|BBH42515.1\|5479862_5480330_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
AP019314.1\|BBH42512.1\|5477309_5477912_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
AP019314.1\|BBH42509.1\|5473224_5474259_+\|phosphate-transport-system-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270372
AP019314.1\|BBH42513.1\|5477908_5478832_-\|glucokinase	unknown	unknown	gnl\|CDD\|224851
AP019314.1\|BBH42505.1\|5468096_5468900_-\|phosphate-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184588
AP019314.1\|BBH42518.1\|5482467_5483511_-\|muramoyltetrapeptide-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
AP019314.1\|BBH42510.1\|5474512_5476054_-\|ferredoxin--nitrite-reductase	unknown	unknown	gnl\|CDD\|236572
AP019314.1\|BBH42521.1\|5484527_5485094_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
AP019314.1\|BBH42506.1\|5469119_5470013_-\|phosphate-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|273373
AP019314.1\|BBH42507.1\|5470411_5471371_-\|phosphate-transport-system-permease-protein-PstC-homolog	unknown	unknown	gnl\|CDD\|223646
AP019314.1\|BBH42511.1\|5476440_5477079_+\|probable-ATP-dependent-protease	unknown	unknown	gnl\|CDD\|225362
AP019314.1\|BBH42514.1\|5479360_5479852_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
AP019314.1\|BBH42516.1\|5480368_5480749_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42508.1\|5471465_5472587_-\|phosphate-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|273374

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH42504.1\|5467141_5467939_-\|phosphate-transport-ATP-binding-protein	gnl\|CDD\|184588	PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional.	3.85152e-179
AP019314.1\|BBH42520.1\|5483898_5484366_-\|IMP-dehydrogenase	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.95878e-54
AP019314.1\|BBH42523.1\|5486217_5487015_-\|hypothetical-protein	gnl\|CDD\|376645	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase. This is a family of proteins, previously known as DUF62, found in archaebacteria and bacteria. The structure of proteins in this family is similar to that of a bacterial fluorinating enzyme. S-adenosyl-l-methionine hydroxide adenosyltransferases utilizes a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. This family used to be known as DUF62.	1.14232e-112
AP019314.1\|BBH42522.1\|5485165_5486014_+\|nicotinate-nucleotide-pyrophosphorylase	gnl\|CDD\|236017	PRK07428, PRK07428, carboxylating nicotinate-nucleotide diphosphorylase.	0
AP019314.1\|BBH42517.1\|5481091_5482144_-\|hypothetical-protein	gnl\|CDD\|225213	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only].	5.0241e-53
AP019314.1\|BBH42515.1\|5479862_5480330_+\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	8.37414e-61
AP019314.1\|BBH42512.1\|5477309_5477912_+\|transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.53162e-26
AP019314.1\|BBH42509.1\|5473224_5474259_+\|phosphate-transport-system-substrate-binding-protein	gnl\|CDD\|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.94039e-125
AP019314.1\|BBH42513.1\|5477908_5478832_-\|glucokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.90532e-73
AP019314.1\|BBH42505.1\|5468096_5468900_-\|phosphate-transport-ATP-binding-protein	gnl\|CDD\|184588	PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional.	0
AP019314.1\|BBH42518.1\|5482467_5483511_-\|muramoyltetrapeptide-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	4.1117e-116
AP019314.1\|BBH42510.1\|5474512_5476054_-\|ferredoxin--nitrite-reductase	gnl\|CDD\|236572	PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.	0
AP019314.1\|BBH42521.1\|5484527_5485094_+\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.69465e-41
AP019314.1\|BBH42506.1\|5469119_5470013_-\|phosphate-transport-system-permease-protein	gnl\|CDD\|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	3.38429e-93
AP019314.1\|BBH42507.1\|5470411_5471371_-\|phosphate-transport-system-permease-protein-PstC-homolog	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.29003e-104
AP019314.1\|BBH42511.1\|5476440_5477079_+\|probable-ATP-dependent-protease	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	4.25234e-67
AP019314.1\|BBH42514.1\|5479360_5479852_+\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.2107e-63
AP019314.1\|BBH42519.1\|5483565_5483856_-\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	3.98885e-09
AP019314.1\|BBH42508.1\|5471465_5472587_-\|phosphate-binding-periplasmic-protein	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	2.30081e-121

>AP019314.1|BBH42513.1|5477908_5478832_-|glucokinase
MVKTVIGVDLGGTAIKIGKFDQEGNCLESLTLPTPQPATPKEVAHTIHQGICQVNLDKSCQAIGVGTPGPADAQGRIAKIAINLAGWRDIPLADWLEESTGMPTILANDANCAGLGEAWLGAGKRFQNLILLTLGTGVGGAIILDGNLFVGSKGTAAELGLITLNFDGPLCNSGNRGSLEQYASRQAIRRMTGKEPKQLAELAEKGDQEALEFWQGYGCLLGAGIASLLYILTPEAVIIGGGISASAKFFFPSLLTEIERRVLPSSREGLEVLTAELGNRAGMVGAAKLAWQLLDLRKESIMGGGLT
>AP019314.1|BBH42512.1|5477309_5477912_+|transcriptional-regulator
MLLTYNPSVSPFREDYSESRRLHFYDRGENIPLVVDGVWQVYRGMAQLSQVSESGEEILLGWAHSSHFFGLNLTHLESYHARALSELYLKWYTIAEVENSAELTRMMLNQMIRRQQQTESLLAIAGLKRVEERLQQLLQLLKREMGEPIAQGSRLKIRLTHQNLANAIGTTRVTVTRLLGEFQRQGAVSSDCDRHLIIHD
>AP019314.1|BBH42511.1|5476440_5477079_+|probable-ATP-dependent-protease
MATSSIAVRELPLFPLPEVVLFPGRPLPLHIFEFRYRIMMNTILEEDRRFGVLMVDPATGEIAKVGSCAEVVRCQRLPDDRLKILTIGQQRFRVLEYVREKPYRVGLVEWIEDVPTTQDLRPLAKEVDRLLRDVVHLSAKLTAQKIELPDDLPSLPLELSYWVAGNLYGVAGEQQALLEMLDTVSRLQRESEILTSTRNHLAARTALKDALN
>AP019314.1|BBH42510.1|5474512_5476054_-|ferredoxin--nitrite-reductase
MVQAPEKDGTTLNKFEKFKAEKDGLAIKDELEHFAQIGWEAMDKTDLEHRLKWVGVFYRPVTPGKFMMRLRVPNGILSSEQMRVLGEIVQRYGDDGNADITTRQNLQLRGIRIEDIPDIFQRLKSVGMTSVQSGMDNVRNITGSPMAGLDADELIDTRELVQKVQDMITNYGQGNYQFSNLPRKFNIAIEGGRDNSVHAEINDIAFVPAYKEGELGFNVVVGGFFSAKRCEAAIPMNVWVRPNQEVVDLCRGILEVYRDNGLRANRQKSRLMWLIDEWGIEEFRTRVANQLGYPLATAAEKDAIDWEKRDHLGVFPQKQEGLSYIGLCVPVGRLFADDMFDLARIAEVYGSGELRLTVEQNVIIPNIAAENMPTLLTEPLLAKFTPNPTPLQRALVSCTGAQFCNFALIETKNKAVDLISQLDAELNIPRGVRIHWTGCPNSCGQPQVADIGLMGTKARKDGKTVEGVDLYMGGKVGKDAHLGSCVQKGIPCEDLKSVLTSILIEQFGATPKG
>AP019314.1|BBH42509.1|5473224_5474259_+|phosphate-transport-system-substrate-binding-protein
MLEIFTQLSRPTKVVATILGTALLLPACANINPQDLKPIKIDGSSTVAPITNKVLEDFKANTPNKALADVKIDANISGTGGGFRKFCAGETDINNASRPISVEELKECDANKVRFIELPIAFDALTVVVNPQNNWLDDISTTELRTIWEPAAENKIKRWNQINPAWPDQPITLHGPGKDSGTYDFFSDVINGKDASRGDFNFSEDDQALVNAVSQDANALGYFGHAYYEQNRDKLKALKVNGIEPTRSNVEDSKYQPLSRPLFIYVNAQKAQENPALEKFVEHYLDRVPNLLDTIGYIPLPDEAYHLARVQLQKFEIGTVFDGRPQPNLTIGELLRKQAQFEAK
>AP019314.1|BBH42508.1|5471465_5472587_-|phosphate-binding-periplasmic-protein
MPSRNRTHLLTALSLATLTATLTACGGGDTAGTSGEGSNRIAQVPLQGEVALNGAGASFPAPLYQNWFVTINQLFSKLLINYQSTGSGAGVEQFIQGTIDFGASDVAMSDEDMARVSRGVLLLPMTAGSIVMAYNLPGVEGLKLSREAYIGIFLGTITRWNDAKIAADNPDLKLPNEEITVVHRADGSGTTGVFTKFLSAVSPEWKKSIGEGKAVQWPTKKGKFLGGRGNEGVTALIQQNQGSIGYIEYGFAKNNKLPMATLQNQAGQFVIPNETNAAATLATVELPENLRAFIVDPPGENSYPIVTYSWMLVYKKYNDPQKALAMEAMIEFGLNQGQEQSAALGYIPLPKNVRERVAAAADVIYPDYTINVD
>AP019314.1|BBH42507.1|5470411_5471371_-|phosphate-transport-system-permease-protein-PstC-homolog
MSAPTVSPDSNFKERPESEKILDKGFVGLTTAFAIAIGVILLLIALVIFIRALPAIQTFGLGFLTSSAWNPVRGREEFGVLPVIYGTLVSSLIALLIAVPLGIGSAIFLSEDFIPLNARTILVFLVQLLAAIPSVVYGLWGIFVLIPILRPLGNWLNANFSWIPLFSTPLGGPGMLPAGVILAIMILPIIIAISRDSLAALPPDLRQASLGLGATRWETIFRVLIPAAFSGIVGGIMLALGRALGETMAVTMIIGNSNRISASILAPANTIASLLANQFAEASGMQVSALMYAGFVLLVLTLVVNIFAELIVNRVKAKY
>AP019314.1|BBH42506.1|5469119_5470013_-|phosphate-transport-system-permease-protein
MDSANLGNNLKKKPSSPRSLLGTIMTVLSGLCLAVTVIPLFAVLGFVFVQGVGRLNANLFTKLPPPPGLGGGGIANAILGTIIVVALATAIAVPIGVLAAVYLSEFSGDNKLAQGVRFATNVLAGVPSIIVGVFAYGLLVAPLFGEGTALLGFSALAGSIGLAVLMLPTIIRTTDEALKIVPQDIRWAAMGLGAYNYQTVLKIVLPAAVPAILTGVTLAIARAAGETASLIFTALFSNFWPRGVFEPIATLSVLVFNFATAPFAPQQQLAWAGALILVLLVLVTNILSRLATRQKTY
>AP019314.1|BBH42505.1|5468096_5468900_-|phosphate-transport-ATP-binding-protein
MLTNSNTHSTGTVLKVDKADIYYGNYRAVRDVSSDIPKNKVTAFIGPSGCGKSTILRCFNRLNDLIHGFRIDGKVFYHNQDIYSQEVDPVEVRKYIGMVFQRPNPFPKSIYDNVVYGARLNGYKGDLDELVETSLRRAALWEEVKDKLKESGFSLSGGQQQRLCIARAIAAQPEVLLMDEPCSALDPISTLKVEELMHELKERYTIIIVTHNMQQATRVADLTAFYNAEATDKGGKIGYLVEFDHTDKIFGDPQEQATKDYVSGRFG
>AP019314.1|BBH42504.1|5467141_5467939_-|phosphate-transport-ATP-binding-protein
MYSTDVVTDAVLRTKNLNVYYGSNLAVRDVNLDIPEKKAVAFIGPSGCGKSTVLRCFNRMNDLVKSAKIEGKVTFRGQDIYGNSVNPIGLRSRIGMVFQKPNPFPKSIYENIAFGARLNGYIGDMDQLVEESLKKAVLWDDVKDKLKESGLALSGGQQQRLCIARAIAVKPEVVLMDEPCAALDPISTLKIEELIHELKTQYTIVIVTHNMQQASRVSDLTAFYNAEPTPKGGKVGYLVEYDRTEVIFQNPAQESTRDYVSGRFG
>AP019314.1|BBH42514.1|5479360_5479852_+|hypothetical-protein
MMNITIPNLYDSDYQLWLESTINQLRQGDFQAVDWPNLLEELADLGKSERRALESLLTRLLEHLLKLTYWQSQRDYNQAGWKKEIRNFRIQIKKILKDSPSLKSYLREILPECYLDARNLLIDETELDASIFPVELLASLEEILAENWLPDWEAISSNSEKCN
>AP019314.1|BBH42515.1|5479862_5480330_+|hypothetical-protein
MMNITISNLYDSDYQLWLESTINQLRQGDFQAVDWPNLLEELADLGKNNRRALESLLTRLLEHLLKLTYWQSQRDYNQAAWKGEIRTFRKQIKKILRDSPSLKPYLSEILEECYSDAREIIIDITQLDASIFPVELLASLEEILDQNWLPDFRET
>AP019314.1|BBH42516.1|5480368_5480749_-|hypothetical-protein
MSRRKKKFPCGHKGYGQVCHHCAQLDAAWEERKRQKNAWEATFSQDPIDLRELPKNVVLKAREILQGLQDHRNYRDFHGKRLRHDRFIISIPVTRNYRLICRDHGNLLVPEAVISHEDYNVCKPGR
>AP019314.1|BBH42517.1|5481091_5482144_-|hypothetical-protein
MTTFLASLNILPSSSPAANFRTGEWTFPTLYSTLAPAALADLVFSRYEIDVPKNCQFWHRGLSDVYLLETLKTPYILRVSHCHWRSKMEIDFELELLDYLDRSQVPVAAPIRTKNGNLSVEIKAPEGKRYAVLFPYAPGGIAIGDIDIEQAYHLGAIVANLHRVTADFQPLAYRHPLNLKYLLDDSLQIIAPFLHQRPSDLDCVLETIGEIEEETAKLPTESPYWSICWGDPHSGNVHITPDNQMTLFDFDQCGYGWRVFDIAKFLQVSLQSGLNRQVRHGFIQGYDETVPLTDGELSCLQYLTQAAYIWSWSISLNNLRLTDYSRLCANYFSSRLAILKRLRTQEWELF
>AP019314.1|BBH42518.1|5482467_5483511_-|muramoyltetrapeptide-carboxypeptidase
MKRRQFFINSALTAVSFSLITRKVISNNFPLIKPPHLQPGDGVGIISPAGATFKEDDLNIVIEAVKALKLVPKVGQHALDRYGYLAGKDRERAADINQFFADDNIALILPIRGGWGSARLLPYLDYDLIGRHPKIICGFSDITSLLLAIYAKTGLVTFHAPNGFSSWRTAQTESFRQVLFSGEKLTFRNIPDPDDANRLMRVKNRIQTITKGQAKGKLIGGNLTTLASIAGSPYLPDFTSAILFLEDIGEDIYEIDRLLNQLKLAGILDNLAGFIFGQCSNCSADSDYGSLTLEEVIREYIQPLKIPACLGLMIGHLEIIETLAIGIAVEFDANRGTITMLESAVSK
>AP019314.1|BBH42519.1|5483565_5483856_-|hypothetical-protein
MNQSQETVTYSLETILTRMEGKIDSLQKDVTDLKVGQAVLTGKVEGIENRLNSLEGNQKYQVWALIVLLAGAIVKTFFFPRSPLNPPLIRGASDNF
>AP019314.1|BBH42520.1|5483898_5484366_-|IMP-dehydrogenase
MTKTVADIMTPNPITVTANTSLSEAVKILAEKRFSGLPVVDDNMRLIGVISETDLMWQETGVEAPPYIMLLDSVIYLQNPSRHEKLLHKALGQTVGEVMTDKPISITADRPLKEAASLMYDRHVRRLPVIEEETHKVIGIITRGDIIRDMAKSEA
>AP019314.1|BBH42521.1|5484527_5485094_+|hypothetical-protein
MIAQPQYPERMTPEEYLEWEATQECRHEYIDGEIIAMTGGSLPHNDITLNFYRTLYSHLRPRGCRVNVSDAKVQANNSRYFYPDLVISCDFRDRESRNFIQHPQVIIEVLSPSTGNYDRTKKLQYYRQIPSLQEYVLVDPESISVEVYRRGEDKIWFYCAYSQGEEIILSSLDFHCAIELLYEGISFD
>AP019314.1|BBH42522.1|5485165_5486014_+|nicotinate-nucleotide-pyrophosphorylase
MLPPLLVLDPLLENWLREDLGRGDRTTQAIFFGHAKIGQASWIAKEAGVIAGLPVAERVFQLLNPTIHFTPTVAEGEFCPKSKVIAEIEGSLDALLIGERVALNLAMRLSGIASATRQYVQKIADLSTRLVDTRKTTPGLRILEKYASGIGGAINHRLGLDDAIMIKDNHIQAAGSIEEAVRRVRQNMPYPLTIEVETSQLEEVNQALQQQVEIIMLDNMDLEMMQTAVEMIRNFNSKTKIEASGNITLDRIRNVAETGVDYISTSAPITRSTWLDISMRID
>AP019314.1|BBH42523.1|5486217_5487015_-|hypothetical-protein
MTEQALITLTSDFGLRDGYVGIIKGVIAGIAPHARTIDLNHQISPQDLYAGRFILLNAYQYFPQGTIHLAVIDPGVGSKRRGVGIRFAGGYLVGPDNGLFSGILSQSPAISAVNLDNSSYWRTPNPSTTFHGRDIFAAVAAYLARGVPLEMLGEIIDPDSLQQLAIAVPQIEEDKIRGQIQYIDIFGNLISNIPDYLLEGKNWSVQLGPKIIPAKNTYSDVPSGEIVAFIGSHGGVEIAVNSGSAQKQLHLNIGDAIEVTIDRVC

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Crispr_ID: AP019314_34

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019314_34

5587805-5587939

TypeV

Consensus_repeat	Method
AATGATTGAATGAATACTATGATTGTGTTGTCTTCAGCA	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of AP019314_34

>merge|AP019314|34|5587805-5587939|CRISPRCasFinder
AATGATTGAATGAATACTATGATTGTGTTGTCTTCAGCAACCTTTTATCAATAATCAATCACAGTCCATCACATAATTAGTCTCAACTGTGATTGAAATGATTGAATGAATACTATGATTGTCTTGTCTTCAGCA

>AP019314|34|34|5587805-5587939|CRISPRCasFinder
AATGATTGAATGAATACTATGATTGTGTTGTCTTCAGCA	ACCTTTTATCAATAATCAATCACAGTCCATCACATAATTAGTCTCAACTGTGATTGA
AATGATTGAATGAATACTATGATTGTCTTGTCTTCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
AP019314.1\|BBH42614.1\|5582005_5582563_-\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
AP019314.1\|BBH42624.1\|5594960_5596472_-\|unknown-protein	unknown	unknown	gnl\|CDD\|227621
AP019314.1\|BBH42628.1\|5600722_5601454_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226983
AP019314.1\|BBH42621.1\|5589488_5589833_+\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42615.1\|5582590_5583934_-\|adenylosuccinate-synthetase	unknown	unknown	gnl\|CDD\|234904
AP019314.1\|BBH42625.1\|5596495_5598733_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|283013
AP019314.1\|BBH42629.1\|5601551_5601809_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42616.1\|5584061_5584229_-\|hypothetical-protein	unknown	unknown	unknown
AP019314.1\|BBH42620.1\|5588110_5589265_+\|transposase	unknown	unknown	gnl\|CDD\|376574
AP019314.1\|BBH42622.1\|5589962_5590970_-\|heat-shock-protein-40	unknown	unknown	gnl\|CDD\|237667
AP019314.1\|BBH42617.1\|5584289_5585453_-\|permease	unknown	unknown	gnl\|CDD\|367632
AP019314.1\|BBH42618.1\|5585660_5586704_+\|muconate-cycloisomerase	unknown	unknown	gnl\|CDD\|239435
AP019314.1\|BBH42612.1\|5578626_5579547_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224721
AP019314.1\|BBH42619.1\|5586706_5587750_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225902
AP019314.1\|BBH42610.1\|5576960_5578022_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
AP019314.1\|BBH42611.1\|5578276_5578540_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371480
AP019314.1\|BBH42627.1\|5599853_5600531_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378924
AP019314.1\|BBH42623.1\|5593409_5594411_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224276
AP019314.1\|BBH42626.1\|5599201_5599834_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|225107
AP019314.1\|BBH42613.1\|5580327_5581206_+\|transposase	cas14j	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
AP019314.1\|BBH42614.1\|5582005_5582563_-\|50S-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	6.30915e-54
AP019314.1\|BBH42624.1\|5594960_5596472_-\|unknown-protein	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	3.32204e-24
AP019314.1\|BBH42628.1\|5600722_5601454_+\|hypothetical-protein	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	4.73055e-24
AP019314.1\|BBH42615.1\|5582590_5583934_-\|adenylosuccinate-synthetase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
AP019314.1\|BBH42625.1\|5596495_5598733_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|283013	pfam05231, MASE1, MASE1. Predicted integral membrane sensory domain found in histidine kinases, diguanylate cyclases and other bacterial signaling proteins. This entry also includes members of the 8 transmembrane UhpB type (8TMR-UT) domain family.	4.32816e-34
AP019314.1\|BBH42626.1\|5599201_5599834_+\|two-component-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.15863e-73
AP019314.1\|BBH42623.1\|5593409_5594411_-\|hypothetical-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.65336e-33
AP019314.1\|BBH42620.1\|5588110_5589265_+\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	9.29671e-73
AP019314.1\|BBH42617.1\|5584289_5585453_-\|permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	4.44832e-75
AP019314.1\|BBH42618.1\|5585660_5586704_+\|muconate-cycloisomerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	2.43454e-107
AP019314.1\|BBH42612.1\|5578626_5579547_-\|hypothetical-protein	gnl\|CDD\|224721	COG1808, COG1808, Predicted membrane protein [Function unknown].	8.88134e-47
AP019314.1\|BBH42619.1\|5586706_5587750_+\|hypothetical-protein	gnl\|CDD\|225902	COG3367, COG3367, Uncharacterized conserved protein [Function unknown].	1.71141e-96
AP019314.1\|BBH42622.1\|5589962_5590970_-\|heat-shock-protein-40	gnl\|CDD\|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	6.84478e-67
AP019314.1\|BBH42611.1\|5578276_5578540_-\|hypothetical-protein	gnl\|CDD\|371480	pfam11344, DUF3146, Protein of unknown function (DUF3146). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	7.16407e-53
AP019314.1\|BBH42627.1\|5599853_5600531_-\|hypothetical-protein	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	6.17202e-19
AP019314.1\|BBH42610.1\|5576960_5578022_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
AP019314.1\|BBH42613.1\|5580327_5581206_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.96488e-46

>AP019314.1|BBH42619.1|5586706_5587750_+|hypothetical-protein
MTNYLTPDKKVAILLHEGIKGTRGKTGLSYLRYGKAQVVAIIDAENAGSALKEVAGIDRPLPIVASVREALTYHPDTLLIGIAPSGGILPPHWLEEIKEGVKAGLSLVNGLHTPLKPLFPQLKPDQWIWDIRLEPQDLKIGQARAKNLTCQRILTVGTDMSVGKMSTSIELHRVAPEKGLKSQFLATGQGGIMIAGKGVPLDAVRVDYAAGAIEALVLESAENNDILFIEGQGSLLHPGSTATLPLMRGSQPTGLILVHRAGQIHINDLPDILIPPLTEVIKLYEMTASAGGSFGEVKVKGISLNTFHLSPEAAVQAIETVQEETGLFCTDVVRFGGQGLLSVISKQ
>AP019314.1|BBH42618.1|5585660_5586704_+|muconate-cycloisomerase
MLLNWQTFTIHKRVPLRISRGTTSENTNIWLKISEENIEGWGEASPFDITSEEKKPDKILQELNSIAPILQSFHPCQRQEIEKILWQNQISSATRAAIDTALHDWLGKKANLPLWQIFGLDRSLIPPVSVTIGLNSPENVQKRLLDWLEIGDFSLLKVKLGSPDGIEADRAIILAIKEIVPHLPLTVDANGGWQFSDAVKMCQWLEEKGVIYVEQPLSVGQERDLIDLYQKSPLPIFVDESCFSSQDIPKLADRVHGINIKLMKAGGLAEVQRMIHIAQACRLQIMFGCYSDSSLANTALAHLGPLVNYLDLDSHLNLRDDPFTGLSLEKGRLQPNNSPGLGVSLRI
>AP019314.1|BBH42617.1|5584289_5585453_-|permease
MIKKKISYWVNGGIALIDRYLISQLLPPFLFSVGLFASLGVAIGNLSDLANQVVDANLPLASALEILLLKVPEFVTYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYVVPNANYRATEILVQKINKEASFWKNKDFYYPDYEIKTLENGTINRNLISLFYAEQFDGEKMKTVTVIRWLKQELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYRQVIPFKAEKIALSRSAFDFARQSRDPYEMNIPQAIKYVQLLKLSGDDKRVRFFQVRIQQKIAFPFVCIVFATIGCALGSLPQRISRGTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAWLPNFFGFGLGLWLLWRLNG
>AP019314.1|BBH42616.1|5584061_5584229_-|hypothetical-protein
MFPFFFNTCGSTSRQECQERKLTFLKWMRDDLETRLAGLNAAIETIERQISREGQ
>AP019314.1|BBH42615.1|5582590_5583934_-|adenylosuccinate-synthetase
MANVIVIGAQWGDEGKGKITDLLSRSADVVVRSQGGVNAGHTVVVEEQTFKLHLIPSGILYPDTECIIGSGTVIDPSVLLKEMAQLHALNVTTDNLYISQTAHVTMPYHRLLDQASEEKRGKYKIGTTGRGIGPTYADKSERIGIRVIDLMNTENLRQKLEWTINYKNVILEKLYNLPPLDAKTVIEEYLEYAEILRPHVVDSSLKIYEAIRKRKNILFEGAQGTLLDLDHGTYPYVTSSNPIAGGACVGSGIGPTVIDRVIGVAKAYTTRVGEGPFPTELEGEIEQLLCDRGAEFGTTTGRRRRCGWFDAVIGRYAVRINGLDCLAITKLDVLDTLEEIKVCVAYQLDGQTCRHLPSSAGEFARCQPIYRTMPGWQQPTSDCRSLEDLPKQALDYLKFLGAIMEVPIAIISLGASRDQTIIVEDPIHGPKRALLDENGSPWDNHEF
>AP019314.1|BBH42614.1|5582005_5582563_-|50S-ribosomal-protein-L25
MQVSVECQKRPENINPRALRRQGLIPAVLYGHSGTESVSLVVGEKAALTLLKKASVNNTLVDVNVPEMPWTGKALIQEVQSHPWKRNLYHLSFFSVSAHGKLDIVVPIKAIGEAIGTKQGGLIEQFVNEVNVSCIADNIPEVIEFDVSEIGVGQSLLVGDLKMPEGVTLKDDPHTTVFAIVAAKR
>AP019314.1|BBH42613.1|5580327_5581206_+|transposase
MLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDKQIYLAKCTEPLPIRWSRQIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSLVITSDGDKVSNPEHFNKHYRRLRRASKSLSRKQKGSKNREKARIKVAKIHAQITDSRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIALENAVKCSRMGLSRLWDTP
>AP019314.1|BBH42612.1|5578626_5579547_-|hypothetical-protein
MWRDLWLEASLDFPYLALIVSSCAIATFGLVANSAAVIIGAMIIAPLMLPIRSLAFGGLIGSWRLIRKSALAILVGTIIALAIAWLLGLLIGISEFGSEIQARSQPNLLDLGVAITAGAISGYAKIEPKISGTLAGTAIAVALMPPVCTIGLGLSQGNWVLSLGATLLYITNLLGIALACLLVFLLAGYSNFHRARNALILTSILTAVLLIPLGISFATLANQARLERLLKKALLQRTITFQRAELLESSINWLKQPPRVRLVVRTAESITPRQVELLEEFITKEMGRPFQLNVLVSKVNEVTAPE
>AP019314.1|BBH42611.1|5578276_5578540_-|hypothetical-protein
MSGDNRPESTAYVRIIKQSWQTGKLEGEVRTEQYQWRFQWHFLQGKLSVQPSLGRALIFEPLNRFLERYDYQLEPGGDYEFTVRSKF
>AP019314.1|BBH42610.1|5576960_5578022_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MTQGQKVSVGIVGASGYGGVQLVRLLKEHPLVELAYLGGDSSAGKPYSDLYPHLGHSINLNVEAIDLEIIASRCQVVFLGLPNGLACDLAPPLLAKGCKVLDLSADYRFTSLDTYSKWYGKERQDQAIASTAVYGLPELYREDIKNASLIGCPGCYPTASLMAISPLLKQGLIVPETTIIDAKSGTSGGGRQAKINMLLAEADSSIGAYNVAGKHRHTPEIEQICGDLAGHEVRVQFTPHLMPMVRGILSTVYATLRDPNLVRDDLITIYNAFYRASPFVKILPGGVYPQTKWACGTNLCYLGIEVDPRTDRVIVMSAIDNLVKGQSGQAVQCLNLMMGWEESLALPQMCFYP
>AP019314.1|BBH42620.1|5588110_5589265_+|transposase
MWINFDQLLDLPNVTVVNYQKIAQTIFLKLALLNETIECPNCHQTLDRINQTEYNLVRDLSILGNPVYLEVPRRQFHCQKCQKYISERLSFMRLRQHHTIRYESMIYERVKNCSIEEISREEGLGWEEVELIFNHCAKELEKEEWEAPERISLDEFSNLKGHKDFITTVVDMDKKILLDVIKGHKQEELMEALKARPVAVREKVKEVSVDMWSGFTAVIKELFPNAKIIYDRFHVMAIINDELNNLRKLMGVHEKGLPHLLWKNKEDLKDEQKQQLEVILKEHPCLGIAWEMKEEIRQIYQSSKTFRGAERKLEKWIRIGGILYESSASMIQKHLQGICNYFENHTTNGLIEGMNTKIKLIKRMSYGFTNFEHLRLKLFACFNS
>AP019314.1|BBH42621.1|5589488_5589833_+|hypothetical-protein
MLTPSDSKLSKQQQILSAVSEEEQLKQQRIQEVLLLIDSLFQREETTFRIIIDCLYDVGSLNLINKKFHSRHLNFIMKAIARFSKPIFRIYALYWVKKNSPKLITNWLASKVKF
>AP019314.1|BBH42622.1|5589962_5590970_-|heat-shock-protein-40
MPAADYKDYYAVLGVGKTASAEEIKKAFRKLAVKYHPDRNPNDKSAEERFKEISEAYEVLSDSEKRQKYDQFGQYWQQAGRSNWPGGNPGVDFGSAGFDFSQYSTFDDFINELLGRMGSPGGTRPRSHSYGTPGGGFGDFSNFNDFAGARTPPQAVTSGISTAKLRLTFAEALRGVQKRVNLAGEMIDIKIPPGTKTGNRLRVRGKGLIDPLSKQRGDLFLDVELEPHPFFAFEGDNLTCEVPITPDEAVLGTAIEVPTPDGLVTVKVPAGIRSGQSLRLRGKGWIDNKGQRGDQLVKIVIDTPKELTAIERELYEKIKSQRTTDPRRHLRQVQI
>AP019314.1|BBH42623.1|5593409_5594411_-|hypothetical-protein
MSSNALTNREHLIELYNRGERNFAEVRLSGVNLKRQCLNQINLSHSYLKRANLAEACLINANFKDASLEEVNLSKACLIDANLTKADLSGANLRQSQLSGAILSNTVLKKADLSSACLIHSSLLFAQLLKANLEAANLTSATLTHAMAGKANLKRAILTRAILSSANLSHANLKEANLIRAYLYQANLENCHLQYADLSYADLRGADLRGADLRYANLEGANLTGANLNCSDFEGANLTGADLSKTDANKANFRQANLTGCNLLGANLASANLSGANLHQAGLLLSYLVGSNLKRANLKQANLIGAILTENNLLSASLEETILPNGSRGNLLS
>AP019314.1|BBH42624.1|5594960_5596472_-|unknown-protein
MLTRQSGVRFALGLLIIFNIFYFVHLAYYSYVWHDESLVLLHLSGYTPEQLINYLFDGQIKSTEQLWQFQGVNSVKGFPDTLASLYTSSNYDLPLYYSSLWFLARLLGNSYLVLRGFSVIIWFGILGSFYHLALTLFKNKNAALIATTLIFFSPRFTGYALGIWEYGLYVFCSILSSWLFLKAIDSSQPKKDWFFYSLSLIAGLYTHVFFIFVLVVHSLYFLLQLNYFNFLTKKYYSISLLASLWIYSIWLTRIFTGRFTIFGWSKGSLPLEVLWQRWVTMIARLFYNFSLANPTINPIIEYCLIILVIISFIYLSKKADKKVFTLIILLTIIPFFSLLAWDLIRGFRYTAVGRFYLPSFLGMLLAVTFLLSKGLQQRQGWAKILLILLLVFGLIAKIPYPPPAARYVGYGSNIPNAYTMINRSQKPLIISEHWLDTLPLIHTTDAKTKYLFVQSNPRVSIPSLKNQFTDIYLLNPSPSLRQYLDDQSIQLSPTENQAFWRID
>AP019314.1|BBH42625.1|5596495_5598733_-|two-component-sensor-histidine-kinase
MLRISSDRSKILLVALVYLGVGWLGYLCLNLGSRPAPIWMSAGIGLTAVFLGGKRLVLGVFIGDLLLTFFLAASWPIALFSAIGSSLSALLGAQFLHYLRFSATLQRIRDILLLVFLAALLASAVNATIDTFARSWLNTWDWRQFGQSWGMIWLGDSTGILMTTPLLLRFFFNHHSLREPRQPQRLGEALLCLSLLTVVTSVVFGDQPNFLNPDWSMVQYLEYLPFPFVVWAAMRFQTWGAVIANFLVSILALMGLARGISPFILQAPDYTRGVLILQIFLVIVMSTSLFLSAAISERQQIDRALNETLEREHLVTQVALKVHQSLDIDQVLNTIVEEIRNFLDADQVYIGHCQERGWSKVIAESRRPEIPSLMGWFPEPELLEELGQLFSLDKLIIADNTAKVQTLPTLKGYYEYLQVKSSLVLPLTVNNQHLGALVVHQYSHPRHWQKSEVKLLEQLATQVCIAIGQAQLYQRVQSLNNNLEREVAARTLELREKVREIQRLCEMKTVFLQAVSHDLRTSIMGLVMLLKNLQCRQTEKVTISRAMLDQVVRSCDRQLTLINALSENHFAEERPLILHRQPLSLKEQVEIWLKDWQKDFDLYQATFINLLPDDLPAIDADPCQLRSVFEQLLNNALKHNPSPIQLALDARIDQDMLYCTLSDNGIGMDEEQCQHLFHLYVRNLHNQHLTGIGLGSYQCRQIIEAHSGRIGVKSTPRVGSQFWFSLPLTHQNSRVIKQELVNSNQ
>AP019314.1|BBH42626.1|5599201_5599834_+|two-component-response-regulator
MRILIVEDDPLMQLGLEQALGEQPDFEIVGQASDGLAGVQLALSLRPDLVVMDIGLPRLDGIAATKQIKEGLANVHVVMLTSHTLQQEVIAALASGADAYCIKGASLDRLLAAIEAAKDGATYLDPQIARLVMDNLKPPAVQPNPNLALLSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGIV
>AP019314.1|BBH42627.1|5599853_5600531_-|hypothetical-protein
MNRINNIVLVHGFWADGSSYNQITAQLLAEGYVAIAVQNPLTSLADDVAATKRILNRIEGQCILVGHSWGGTVITEAGNDEKVSGLVYIAALAPDAGESMVDLFSEYETPSQYFQEQEGFIWISQEGIEKILANDLPVEKAALIYATQTPAAASLLTAKTTTTAWRNKPNWYIVSSQDQAVPPELQFNLAERMGAKTVVLASGHVPTISHASAVLEVIREASNRG
>AP019314.1|BBH42628.1|5600722_5601454_+|hypothetical-protein
MTIAQSLPLVESHVNPEIIFPQGQFWSDEPPLESNLHLQQIILLIQCLEWWWREREDYFATGNLTIYYSPNQKKSEFFRGPDFFVVLGTNSNPNRRSWVVWREEGKYPNLIIEILSDSTAKVDREEKKQIYQDIFRTPDYFWFDPESREFQGFTLISGQYQPIAPNPQGWLWSQQLGLYLGLSANKLRYFTPEGELVPTPAEAAQQAENRVLEVESQVQQEKQKAAKLAAKLRELGIDTEENL
>AP019314.1|BBH42629.1|5601551_5601809_-|hypothetical-protein
MSLKTPEQILKLACIADVMDFTDYAVELLAYLTVNCGQDKNYNFADNIIEVLSQFPDLIKQGLANLEIFQILKDFLSPEAENFWK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	524001-524026	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	1084410-1084435	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	1457138-1457163	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	2855953-2855978	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	3199560-3199585	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	3597991-3598016	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	4032083-4032108	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	4880960-4880985	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	5663648-5663673	0	1.0
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP019314.1	2157229-2157259	0	1.0
AP019314_13	13.1\|2288972\|15\|AP019314\|CRISPRCasFinder	2288972-2288986	15	AP019314.1	409830-409844	0	1.0
AP019314_13	13.1\|2288972\|15\|AP019314\|CRISPRCasFinder	2288972-2288986	15	AP019314.1	737937-737951	0	1.0
AP019314_13	13.1\|2288972\|15\|AP019314\|CRISPRCasFinder	2288972-2288986	15	AP019314.1	1984941-1984955	0	1.0
AP019314_13	13.1\|2288972\|15\|AP019314\|CRISPRCasFinder	2288972-2288986	15	AP019314.1	3052619-3052633	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1129309-1129326	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1650212-1650229	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1893156-1893173	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1925097-1925114	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	2001275-2001292	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	3052635-3052652	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	3059091-3059108	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	3550896-3550913	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	4013929-4013946	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	4149323-4149340	0	1.0
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	4471341-4471358	0	1.0
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3256379-3256411	0	1.0
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3256379-3256411	0	1.0
AP019314_33	33.3\|5479264\|15\|AP019314\|CRISPRCasFinder	5479264-5479278	15	AP019314.1	2849191-2849205	0	1.0
AP019314_33	33.3\|5479264\|15\|AP019314\|CRISPRCasFinder	5479264-5479278	15	AP019314.1	2849228-2849242	0	1.0
AP019314_33	33.3\|5479264\|15\|AP019314\|CRISPRCasFinder	5479264-5479278	15	AP019314.1	2849265-2849279	0	1.0
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	730879-730904	1	0.962
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	2281557-2281582	1	0.962
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	3796067-3796092	1	0.962
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	4125535-4125560	1	0.962
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	44107-44124	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	285298-285315	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	298177-298194	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	298204-298221	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	454435-454452	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1150610-1150627	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1245100-1245117	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	1599487-1599504	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	2371640-2371657	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	2672807-2672824	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	2692279-2692296	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	2819102-2819119	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	2902576-2902593	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	4467841-4467858	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	5115567-5115584	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	5334604-5334621	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	5459854-5459871	1	0.944
AP019314_13	13.2\|2289012\|18\|AP019314\|CRISPRCasFinder	2289012-2289029	18	AP019314.1	5460917-5460934	1	0.944
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	524001-524026	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	1084410-1084435	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	1457138-1457163	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	2855953-2855978	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	3199560-3199585	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	3597991-3598016	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	4032083-4032108	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	4880960-4880985	1	0.962
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	5663648-5663673	1	0.962
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3502914-3502946	1	0.97
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3504012-3504044	1	0.97
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	4104763-4104795	1	0.97
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3502914-3502946	1	0.97
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3504012-3504044	1	0.97
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	4104763-4104795	1	0.97
AP019314_3	3.1\|483747\|26\|AP019314\|CRISPRCasFinder	483747-483772	26	AP019314.1	5224261-5224286	2	0.923
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	2281557-2281582	2	0.923
AP019314_17	17.1\|2345585\|26\|AP019314\|CRISPRCasFinder	2345585-2345610	26	AP019314.1	3796067-3796092	2	0.923
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	1669072-1669104	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	1669084-1669116	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	1669096-1669128	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	1670343-1670375	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3502902-3502934	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3504000-3504032	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3504036-3504068	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3505098-3505130	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3577196-3577228	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	3578204-3578236	2	0.939
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	AP019314.1	4104751-4104783	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	1669072-1669104	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	1669084-1669116	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	1669096-1669128	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	1670343-1670375	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3502902-3502934	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3504000-3504032	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3504036-3504068	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3505098-3505130	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3577196-3577228	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	3578204-3578236	2	0.939
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	AP019314.1	4104751-4104783	2	0.939

1. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 524001-524026, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

2. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 1084410-1084435, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

3. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 1457138-1457163, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

4. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 2855953-2855978, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

5. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 3199560-3199585, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

6. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 3597991-3598016, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

7. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 4032083-4032108, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

8. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 4880960-4880985, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

9. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 5663648-5663673, mismatch: 0, identity: 1.0

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttaat	Protospacer
**************************

10. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to position: 2157229-2157259, mismatch: 0, identity: 1.0

catcgcggttaattcatgaattaaccctacg	CRISPR spacer
catcgcggttaattcatgaattaaccctacg	Protospacer
*******************************

11. spacer 13.1|2288972|15|AP019314|CRISPRCasFinder matches to position: 409830-409844, mismatch: 0, identity: 1.0

ggttttagggtgtta	CRISPR spacer
ggttttagggtgtta	Protospacer
***************

12. spacer 13.1|2288972|15|AP019314|CRISPRCasFinder matches to position: 737937-737951, mismatch: 0, identity: 1.0

ggttttagggtgtta	CRISPR spacer
ggttttagggtgtta	Protospacer
***************

13. spacer 13.1|2288972|15|AP019314|CRISPRCasFinder matches to position: 1984941-1984955, mismatch: 0, identity: 1.0

ggttttagggtgtta	CRISPR spacer
ggttttagggtgtta	Protospacer
***************

14. spacer 13.1|2288972|15|AP019314|CRISPRCasFinder matches to position: 3052619-3052633, mismatch: 0, identity: 1.0

ggttttagggtgtta	CRISPR spacer
ggttttagggtgtta	Protospacer
***************

15. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1129309-1129326, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

16. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1650212-1650229, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

17. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1893156-1893173, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

18. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1925097-1925114, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

19. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 2001275-2001292, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

20. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 3052635-3052652, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

21. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 3059091-3059108, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

22. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 3550896-3550913, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

23. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 4013929-4013946, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

24. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 4149323-4149340, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

25. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 4471341-4471358, mismatch: 0, identity: 1.0

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcgttgcggg	Protospacer
******************

26. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3256379-3256411, mismatch: 0, identity: 1.0

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgatttcc	Protospacer
*********************************

27. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3256379-3256411, mismatch: 0, identity: 1.0

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgatttcc	Protospacer
*********************************

28. spacer 33.3|5479264|15|AP019314|CRISPRCasFinder matches to position: 2849191-2849205, mismatch: 0, identity: 1.0

tagctccccccgcct	CRISPR spacer
tagctccccccgcct	Protospacer
***************

29. spacer 33.3|5479264|15|AP019314|CRISPRCasFinder matches to position: 2849228-2849242, mismatch: 0, identity: 1.0

tagctccccccgcct	CRISPR spacer
tagctccccccgcct	Protospacer
***************

30. spacer 33.3|5479264|15|AP019314|CRISPRCasFinder matches to position: 2849265-2849279, mismatch: 0, identity: 1.0

tagctccccccgcct	CRISPR spacer
tagctccccccgcct	Protospacer
***************

31. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 730879-730904, mismatch: 1, identity: 0.962

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttgat	Protospacer
***********************.**

32. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 2281557-2281582, mismatch: 1, identity: 0.962

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggttccccccttaat	Protospacer
************* ************

33. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 3796067-3796092, mismatch: 1, identity: 0.962

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatctccccttaat	Protospacer
****************.*********

34. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 4125535-4125560, mismatch: 1, identity: 0.962

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatccccccttgat	Protospacer
***********************.**

35. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 44107-44124, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcattgcggg	Protospacer
**********.*******

36. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 285298-285315, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

37. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 298177-298194, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

38. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 298204-298221, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

39. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 454435-454452, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

40. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1150610-1150627, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgtgcgttgcggg	Protospacer
*******.**********

41. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1245100-1245117, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

42. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 1599487-1599504, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

43. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 2371640-2371657, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

44. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 2672807-2672824, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

45. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 2692279-2692296, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

46. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 2819102-2819119, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

47. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 2902576-2902593, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcgtgcgcattgcggg	Protospacer
**********.*******

48. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 4467841-4467858, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

49. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 5115567-5115584, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

50. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 5334604-5334621, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
ctgcttgcgcgttgcggg	Protospacer
**** *************

51. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 5459854-5459871, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

52. spacer 13.2|2289012|18|AP019314|CRISPRCasFinder matches to position: 5460917-5460934, mismatch: 1, identity: 0.944

ctgcgtgcgcgttgcggg	CRISPR spacer
cttcgtgcgcgttgcggg	Protospacer
** ***************

53. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 524001-524026, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

54. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 1084410-1084435, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

55. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 1457138-1457163, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

56. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 2855953-2855978, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

57. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 3199560-3199585, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

58. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 3597991-3598016, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

59. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 4032083-4032108, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

60. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 4880960-4880985, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

61. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 5663648-5663673, mismatch: 1, identity: 0.962

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggatccccccgcctatc	Protospacer
***.**********************

62. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3502914-3502946, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccaatttcc	Protospacer
**************************.******

63. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3504012-3504044, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccaatttcc	Protospacer
**************************.******

64. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 4104763-4104795, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

65. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3502914-3502946, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccaatttcc	Protospacer
**************************.******

66. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3504012-3504044, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccaatttcc	Protospacer
**************************.******

67. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 4104763-4104795, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

68. spacer 3.1|483747|26|AP019314|CRISPRCasFinder matches to position: 5224261-5224286, mismatch: 2, identity: 0.923

gataggcggggggatccccccttaat	CRISPR spacer
gataggcggggggatctacccttaat	Protospacer
****************. ********

69. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 2281557-2281582, mismatch: 2, identity: 0.923

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggggaaccccccgcctatc	Protospacer
***.******** *************

70. spacer 17.1|2345585|26|AP019314|CRISPRCasFinder matches to position: 3796067-3796092, mismatch: 2, identity: 0.923

attgaggggggatccccccgcctatc	CRISPR spacer
attaaggggagatccccccgcctatc	Protospacer
***.*****.****************

71. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 1669072-1669104, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

72. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 1669084-1669116, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

73. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 1669096-1669128, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

74. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 1670343-1670375, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

75. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3502902-3502934, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttgccaatttcc	Protospacer
***********************.**.******

76. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3504000-3504032, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttgccaatttcc	Protospacer
***********************.**.******

77. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3504036-3504068, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgcgttcc	Protospacer
***************************  ****

78. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3505098-3505130, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgcgttcc	Protospacer
***************************  ****

79. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3577196-3577228, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

80. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 3578204-3578236, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

81. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to position: 4104751-4104783, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

82. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 1669072-1669104, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

83. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 1669084-1669116, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

84. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 1669096-1669128, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

85. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 1670343-1670375, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

86. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3502902-3502934, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttgccaatttcc	Protospacer
***********************.**.******

87. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3504000-3504032, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttgccaatttcc	Protospacer
***********************.**.******

88. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3504036-3504068, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgcgttcc	Protospacer
***************************  ****

89. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3505098-3505130, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgcgttcc	Protospacer
***************************  ****

90. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3577196-3577228, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

91. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 3578204-3578236, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

92. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to position: 4104751-4104783, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP019314_7	7.16\|718881\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718881-718914	34	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	107457-107490	0	1.0
AP019314_7	7.17\|718952\|33\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718952-718984	33	LC425519	Uncultured phage DNA, contig: NODE671	10160-10192	0	1.0
AP019314_7	7.19\|719094\|40\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719094-719133	40	LC425519	Uncultured phage DNA, contig: NODE671	11057-11096	0	1.0
AP019314_7	7.6\|718166\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718166-718200	35	MT840186	Bacteriophage sp. contig_1047 genomic sequence	10586-10620	1	0.971
AP019314_7	7.8\|718311\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718311-718345	35	LC425526	Uncultured phage DNA, contig: NODE982	4236-4270	1	0.971
AP019314_7	7.19\|719094\|40\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719094-719133	40	MT840187	Bacteriophage sp. Joined_contig_543 genomic sequence	22601-22640	1	0.975
AP019314_7	7.19\|719094\|40\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719094-719133	40	LC425526	Uncultured phage DNA, contig: NODE982	2103-2142	1	0.975
AP019314_7	7.19\|719094\|40\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719094-719133	40	LC425526	Uncultured phage DNA, contig: NODE982	2193-2232	1	0.975
AP019314_7	7.22\|719321\|33\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719321-719353	33	MT840186	Bacteriophage sp. contig_1047 genomic sequence	9258-9290	1	0.97
AP019314_7	7.38\|720480\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720480-720513	34	LC425518	Uncultured phage DNA, contig: NODE577	6036-6069	1	0.971
AP019314_7	7.6\|718166\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718166-718200	35	LC425522	Uncultured phage DNA, contig: NODE620	2179-2213	2	0.943
AP019314_7	7.9\|718383\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718383-718416	34	LC425525	Uncultured phage DNA, contig: NODE869	3229-3262	2	0.941
AP019314_7	7.9\|718383\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718383-718416	34	MT840186	Bacteriophage sp. contig_1047 genomic sequence	14438-14471	2	0.941
AP019314_7	7.15\|718810\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718810-718843	34	LC425525	Uncultured phage DNA, contig: NODE869	7091-7124	2	0.941
AP019314_7	7.18\|719022\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719022-719056	35	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	107283-107317	2	0.943
AP019314_7	7.19\|719094\|40\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719094-719133	40	LC425526	Uncultured phage DNA, contig: NODE982	2013-2052	2	0.95
AP019314_7	7.22\|719321\|33\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719321-719353	33	LC425522	Uncultured phage DNA, contig: NODE620	664-696	2	0.939
AP019314_7	7.24\|719467\|36\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719467-719502	36	MT840186	Bacteriophage sp. contig_1047 genomic sequence	26676-26711	2	0.944
AP019314_7	7.42\|720768\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720768-720802	35	MT840187	Bacteriophage sp. Joined_contig_543 genomic sequence	16221-16255	2	0.943
AP019314_7	7.9\|718383\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718383-718416	34	LC425522	Uncultured phage DNA, contig: NODE620	6036-6069	3	0.912
AP019314_7	7.17\|718952\|33\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718952-718984	33	LC425526	Uncultured phage DNA, contig: NODE982	1105-1137	3	0.909
AP019314_7	7.19\|719094\|40\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719094-719133	40	MT840185	Bacteriophage sp. Joined_contig_19 genomic sequence	135161-135200	3	0.925
AP019314_7	7.20\|719171\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719171-719204	34	LC425524	Uncultured phage DNA, contig: NODE656	6709-6742	3	0.912
AP019314_7	7.25\|719540\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719540-719574	35	LC425522	Uncultured phage DNA, contig: NODE620	473-507	3	0.914
AP019314_7	7.25\|719540\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719540-719574	35	MT840186	Bacteriophage sp. contig_1047 genomic sequence	8823-8857	3	0.914
AP019314_7	7.42\|720768\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720768-720802	35	LC425519	Uncultured phage DNA, contig: NODE671	2087-2121	3	0.914
AP019314_21	21.1\|3253357\|33\|AP019314\|CRISPRCasFinder	3253357-3253389	33	NZ_CP043059	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence	48568-48600	3	0.909
AP019314_22	22.1\|3254868\|33\|AP019314\|CRISPRCasFinder	3254868-3254900	33	NZ_CP043059	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence	48568-48600	3	0.909
AP019314_7	7.27\|719686\|36\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719686-719721	36	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	105962-105997	4	0.889
AP019314_7	7.27\|719686\|36\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	719686-719721	36	LC425515	Uncultured phage DNA, contig: NODE375	12567-12602	4	0.889
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	NC_019507	Campylobacter phage CP21, complete genome	38721-38746	4	0.846
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MK408758	Campylobacter phage CP20, complete genome	147426-147451	4	0.846
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	HE815464	Campylobacter phage CP21 complete sequence	38721-38746	4	0.846
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	FN667789	Campylobacter phage CPt10, complete genome	148201-148226	4	0.846
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MT932329	Campylobacter phage F379, complete genome	1746-1771	4	0.846
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	FN667788	Campylobacter phage CP220, complete genome	27671-27696	4	0.846
AP019314_2	2.1\|336303\|30\|AP019314\|CRISPRCasFinder	336303-336332	30	MK620899	Gordonia phage GodonK, complete genome	45211-45240	7	0.767
AP019314_2	2.1\|336303\|30\|AP019314\|CRISPRCasFinder	336303-336332	30	MN096369	Gordonia phage Phendrix, complete genome	45073-45102	7	0.767
AP019314_7	7.39\|720551\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720551-720584	34	NC_029073	Geobacillus virus E3, complete genome	2791-2824	7	0.794
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MT679222	Proteus phage 2, complete genome	50588-50613	7	0.731
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MT679223	Proteus phage 1, complete genome	50845-50870	7	0.731
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MT740245	Proteus phage M4H10_20, complete genome	50968-50993	7	0.731
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MG030347	Proteus phage PM135, complete genome	51617-51642	7	0.731
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MH830339	Proteus phage Stubb, complete genome	50895-50920	7	0.731
AP019314_14	14.1\|2298152\|26\|AP019314\|CRISPRCasFinder	2298152-2298177	26	MN935203	UNVERIFIED: Proteus phage VTCCBPA139, partial genome	46845-46870	7	0.731
AP019314_4	4.1\|527567\|38\|AP019314\|CRISPRCasFinder	527567-527604	38	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	109278-109315	8	0.789
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	7834-7864	8	0.742
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	7833-7863	8	0.742
AP019314_4	4.1\|527567\|38\|AP019314\|CRISPRCasFinder	527567-527604	38	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	109280-109317	9	0.763
AP019314_7	7.35\|720263\|35\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720263-720297	35	NC_015418	Clostridium botulinum BKT015925 plasmid p3BKT015925, complete sequence	1321-1355	9	0.743
AP019314_7	7.41\|720697\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720697-720730	34	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	885897-885930	9	0.735
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP017992	Planktothrix agardhii NIES-204 plasmid plasmid1 DNA, complete sequence	95442-95472	9	0.71
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP017992	Planktothrix agardhii NIES-204 plasmid plasmid1 DNA, complete sequence	95441-95471	9	0.71
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP017995	Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence	11160-11190	9	0.71
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP017995	Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence	11159-11189	9	0.71
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP017995	Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence	13881-13911	9	0.71
AP019314_12	12.1\|2157275\|31\|AP019314\|CRISPRCasFinder	2157275-2157305	31	AP017995	Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence	13880-13910	9	0.71
AP019314_7	7.15\|718810\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	718810-718843	34	MK994522	Methanobacterium virus PhiF1, complete genome	44989-45022	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1664832-1664865	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1585347-1585380	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1654963-1654996	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1584369-1584402	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1585339-1585372	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1584660-1584693	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1585329-1585362	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1664992-1665025	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1664992-1665025	10	0.706
AP019314_7	7.33\|720118\|34\|AP019314\|PILER-CR,CRISPRCasFinder,CRT	720118-720151	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1664970-1665003	10	0.706

1. spacer 7.16|718881|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

cggcattctctatcggcgcgtctccgatagactc	CRISPR spacer
cggcattctctatcggcgcgtctccgatagactc	Protospacer
**********************************

2. spacer 7.17|718952|33|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425519 (Uncultured phage DNA, contig: NODE671) position: , mismatch: 0, identity: 1.0

aagagagctatcttatcccttaccagacggaaa	CRISPR spacer
aagagagctatcttatcccttaccagacggaaa	Protospacer
*********************************

3. spacer 7.19|719094|40|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425519 (Uncultured phage DNA, contig: NODE671) position: , mismatch: 0, identity: 1.0

ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	CRISPR spacer
ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	Protospacer
****************************************

4. spacer 7.6|718166|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 1, identity: 0.971

taatcacttttattgctgactttgctgtacatctt	CRISPR spacer
taatcacttttattgctgacgttgctgtacatctt	Protospacer
******************** **************

5. spacer 7.8|718311|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 1, identity: 0.971

tcctatggatgggcatcggagggtattagcttggt	CRISPR spacer
ccctatggatgggcatcggagggtattagcttggt	Protospacer
.**********************************

6. spacer 7.19|719094|40|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840187 (Bacteriophage sp. Joined_contig_543 genomic sequence) position: , mismatch: 1, identity: 0.975

ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	CRISPR spacer
ttaacagaagcagaagctcaaaaagtctttaaagaaaaga	Protospacer
******************************.*********

7. spacer 7.19|719094|40|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 1, identity: 0.975

ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	CRISPR spacer
ttgacagaagcagaagctcaaaaagtctttgaagaaaaga	Protospacer
**.*************************************

8. spacer 7.19|719094|40|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 1, identity: 0.975

ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	CRISPR spacer
ttgacagaagcagaagctcaaaaagtctttgaagaaaaga	Protospacer
**.*************************************

9. spacer 7.22|719321|33|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 1, identity: 0.97

atgatttactgtgtaatagtaattgtgatgagt	CRISPR spacer
atgatttactgtgtagtagtaattgtgatgagt	Protospacer
***************.*****************

10. spacer 7.38|720480|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425518 (Uncultured phage DNA, contig: NODE577) position: , mismatch: 1, identity: 0.971

atcgaagagctacacgctgaaaaagagcgcgata	CRISPR spacer
atcgaagagctacacgccgaaaaagagcgcgata	Protospacer
*****************.****************

11. spacer 7.6|718166|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 2, identity: 0.943

taatcac-ttttattgctgactttgctgtacatctt	CRISPR spacer
-aatcactttttattgctgactttgctatacatctt	Protospacer
 ****** *******************.********

12. spacer 7.9|718383|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 2, identity: 0.941

tcgattaatcatcctaaagatatcggcagaaccg	CRISPR spacer
tcgattaatcatcctaaaaatatcggcagaacca	Protospacer
******************.**************.

13. spacer 7.9|718383|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 2, identity: 0.941

tcgattaatcatcctaaagatatcggcagaaccg	CRISPR spacer
tcgattaatcatcctaaaaatatcggcagaacca	Protospacer
******************.**************.

14. spacer 7.15|718810|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 2, identity: 0.941

aaccctgattctaatgcaagagaattgacttcta	CRISPR spacer
aatcctgattctaatgcaagaggattgacttcta	Protospacer
**.*******************.***********

15. spacer 7.18|719022|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttggaacttcgcttagatgccttattgggtaag	CRISPR spacer
ttttggaacttcgcttagatgccttatcaggtaag	Protospacer
***************************..******

16. spacer 7.19|719094|40|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 2, identity: 0.95

ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	CRISPR spacer
ttgacagaaacagaagctcaaaaagtctttgaagaaaaga	Protospacer
**.******.******************************

17. spacer 7.22|719321|33|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 2, identity: 0.939

atgatttactgtgtaatagtaattgtgatgagt	CRISPR spacer
atgatttactctgtagtagtaattgtgatgagt	Protospacer
********** ****.*****************

18. spacer 7.24|719467|36|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 2, identity: 0.944

ttcctaagtcagcaaagttgttgatcgttttttccg	CRISPR spacer
ttcctaagtcagcaaagttattgatcgtcttttccg	Protospacer
*******************.********.*******

19. spacer 7.42|720768|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840187 (Bacteriophage sp. Joined_contig_543 genomic sequence) position: , mismatch: 2, identity: 0.943

ttatatccccactgaaaaccttaaggaagttaaac	CRISPR spacer
ctatatccccaccgaaaaccttaaggaagttaaac	Protospacer
.***********.**********************

20. spacer 7.9|718383|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 3, identity: 0.912

tcgattaatcatcctaaagatatcggcagaaccg	CRISPR spacer
tcgattgatcatcctaaaaatatcggcagaacca	Protospacer
******.***********.**************.

21. spacer 7.17|718952|33|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 3, identity: 0.909

aagagagctatcttatcccttaccagacggaaa	CRISPR spacer
aagagagctatcttatcctttaccagacggcac	Protospacer
******************.*********** *

22. spacer 7.19|719094|40|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840185 (Bacteriophage sp. Joined_contig_19 genomic sequence) position: , mismatch: 3, identity: 0.925

ttaacagaagcagaagctcaaaaagtctttgaagaaaaga	CRISPR spacer
ctaacggaaacagaagctcaaaaagtctttgaagaaaaga	Protospacer
.****.***.******************************

23. spacer 7.20|719171|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425524 (Uncultured phage DNA, contig: NODE656) position: , mismatch: 3, identity: 0.912

caatagtgatggaacacctcgcaaacgagtaaaa	CRISPR spacer
taatagtgacgggacacctcgcaaacgagtaaaa	Protospacer
.********.**.*********************

24. spacer 7.25|719540|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 3, identity: 0.914

attttaccctgtatttcagaaattagaagaaaaag	CRISPR spacer
gttttaccctgtattccagaaattagaggaaaaag	Protospacer
.**************.***********.*******

25. spacer 7.25|719540|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 3, identity: 0.914

attttaccctgtatttcagaaattagaagaaaaag	CRISPR spacer
gttttaccctgtattccagaaattagaggaaaaag	Protospacer
.**************.***********.*******

26. spacer 7.42|720768|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425519 (Uncultured phage DNA, contig: NODE671) position: , mismatch: 3, identity: 0.914

ttatatccccactgaaaaccttaaggaagttaaac	CRISPR spacer
gtatatccccaccgaaaaccttaaggaagttaagc	Protospacer
 ***********.********************.*

27. spacer 21.1|3253357|33|AP019314|CRISPRCasFinder matches to NZ_CP043059 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence) position: , mismatch: 3, identity: 0.909

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttacctttttct	Protospacer
**************************  ****.

28. spacer 22.1|3254868|33|AP019314|CRISPRCasFinder matches to NZ_CP043059 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence) position: , mismatch: 3, identity: 0.909

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttacctttttct	Protospacer
**************************  ****.

29. spacer 7.27|719686|36|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.889

ttccctatgtctgaccgttgggcggggagatttaat	CRISPR spacer
tttcctatgtctgaccgttgggtggggagattgagt	Protospacer
**.*******************.********* *.*

30. spacer 7.27|719686|36|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 4, identity: 0.889

ttccctatgtctgaccgttgggcggggagatttaat	CRISPR spacer
ttgcctatgtctgaccgttgagcggggagattgagt	Protospacer
** *****************.*********** *.*

31. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 4, identity: 0.846

aatattaagtccaggtttaaaagttc	CRISPR spacer
agaattaagtccaggtttcaaagttg	Protospacer
*. *************** ******

32. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MK408758 (Campylobacter phage CP20, complete genome) position: , mismatch: 4, identity: 0.846

aatattaagtccaggtttaaaagttc	CRISPR spacer
agaattaagtccaggtttcaaagttg	Protospacer
*. *************** ******

33. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 4, identity: 0.846

aatattaagtccaggtttaaaagttc	CRISPR spacer
agaattaagtccaggtttcaaagttg	Protospacer
*. *************** ******

34. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to FN667789 (Campylobacter phage CPt10, complete genome) position: , mismatch: 4, identity: 0.846

aatattaagtccaggtttaaaagttc	CRISPR spacer
agaattaagtccaggtttcaaagttg	Protospacer
*. *************** ******

35. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 4, identity: 0.846

aatattaagtccaggtttaaaagttc	CRISPR spacer
agaattaagtccaggtttcaaagttg	Protospacer
*. *************** ******

36. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 4, identity: 0.846

aatattaagtccaggtttaaaagttc	CRISPR spacer
agaattaagtccaggtttcaaagttg	Protospacer
*. *************** ******

37. spacer 2.1|336303|30|AP019314|CRISPRCasFinder matches to MK620899 (Gordonia phage GodonK, complete genome) position: , mismatch: 7, identity: 0.767

cgtttaatgcgagaacaacgtcaagaaagc	CRISPR spacer
cttcgcagccgagaacaacgtcaaaaaagc	Protospacer
* *.  *  ***************.*****

38. spacer 2.1|336303|30|AP019314|CRISPRCasFinder matches to MN096369 (Gordonia phage Phendrix, complete genome) position: , mismatch: 7, identity: 0.767

cgtttaatgcgagaacaacgtcaagaaagc	CRISPR spacer
cttcgcagccgagaacaacgtcaaaaaagc	Protospacer
* *.  *  ***************.*****

39. spacer 7.39|720551|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 7, identity: 0.794

gattaatattataaagttcgattgggagacgaat	CRISPR spacer
taataatactataaagttcggttgggaggtggat	Protospacer
 * *****.***********.*******..*.**

40. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MT679222 (Proteus phage 2, complete genome) position: , mismatch: 7, identity: 0.731

aatattaagtccaggtttaaaagttc	CRISPR spacer
catattaagtccaggtttaagtacat	Protospacer
 *******************. .. .

41. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MT679223 (Proteus phage 1, complete genome) position: , mismatch: 7, identity: 0.731

aatattaagtccaggtttaaaagttc	CRISPR spacer
catattaagtccaggtttaagtacat	Protospacer
 *******************. .. .

42. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MT740245 (Proteus phage M4H10_20, complete genome) position: , mismatch: 7, identity: 0.731

aatattaagtccaggtttaaaagttc	CRISPR spacer
catattaagtccaggtttaagtacat	Protospacer
 *******************. .. .

43. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MG030347 (Proteus phage PM135, complete genome) position: , mismatch: 7, identity: 0.731

aatattaagtccaggtttaaaagttc	CRISPR spacer
catattaagtccaggtttaagtacat	Protospacer
 *******************. .. .

44. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MH830339 (Proteus phage Stubb, complete genome) position: , mismatch: 7, identity: 0.731

aatattaagtccaggtttaaaagttc	CRISPR spacer
catattaagtccaggtttaagtacat	Protospacer
 *******************. .. .

45. spacer 14.1|2298152|26|AP019314|CRISPRCasFinder matches to MN935203 (UNVERIFIED: Proteus phage VTCCBPA139, partial genome) position: , mismatch: 7, identity: 0.731

aatattaagtccaggtttaaaagttc	CRISPR spacer
catattaagtccaggtttaagtacat	Protospacer
 *******************. .. .

46. spacer 4.1|527567|38|AP019314|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.789

ggtggggtagggttgattcatgaatcaaccctacagat	CRISPR spacer
tgagcggtagggttgactcatgaatcaaccctaaccct	Protospacer
 * * ***********.****************    *

47. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

catcgcggttaattcatgaattaaccctacg-	CRISPR spacer
-tgtagggttaattaatgaattaaccctacaa	Protospacer
   .. ******** ***************.

48. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

catcgcggttaattcatgaattaaccctacg	CRISPR spacer
gtgtagggttaattaatgaattaaccctaca	Protospacer
   .. ******** ***************.

49. spacer 4.1|527567|38|AP019314|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.763

ggtggggtagggttgattcatgaatcaaccctacagat--	CRISPR spacer
--agcggtagggttgactcatgaatcaaccctaaccctgc	Protospacer
   * ***********.****************    *

50. spacer 7.35|720263|35|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NC_015418 (Clostridium botulinum BKT015925 plasmid p3BKT015925, complete sequence) position: , mismatch: 9, identity: 0.743

ggcaaatataaaagattctggtttttaggattaaa	CRISPR spacer
atccataataaaagattgtggttttaaggatttat	Protospacer
. * *  ********** ******* ****** *

51. spacer 7.41|720697|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

tcactcccaaaagcacgttgttaaaaacgctcgc	CRISPR spacer
aaaaactcaaaagcacgttgatcaaaacgctcta	Protospacer
  *  *.************* * *********

52. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to AP017992 (Planktothrix agardhii NIES-204 plasmid plasmid1 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

catcgcggttaattcatgaattaaccctacg-	CRISPR spacer
-tgtagggataattcatgaattacccctacat	Protospacer
   .. ** ************** ******.

53. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to AP017992 (Planktothrix agardhii NIES-204 plasmid plasmid1 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

catcgcggttaattcatgaattaaccctacg	CRISPR spacer
atgtagggataattcatgaattacccctaca	Protospacer
   .. ** ************** ******.

54. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to AP017995 (Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

catcgcggttaattcatgaattaaccctacg-	CRISPR spacer
-tgtaggggtaattcatgaattacccctacta	Protospacer
   .. ** ************** ******

55. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to AP017995 (Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

catcgcggttaattcatgaattaaccctacg	CRISPR spacer
atgtaggggtaattcatgaattacccctact	Protospacer
   .. ** ************** ******

56. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to AP017995 (Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

catcgcggttaattcatgaattaaccctacg-	CRISPR spacer
-ggtaggggtaattcatgaattacccctaccg	Protospacer
 . .. ** ************** ******

57. spacer 12.1|2157275|31|AP019314|CRISPRCasFinder matches to AP017995 (Planktothrix agardhii NIES-204 plasmid plasmid4 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

catcgcggttaattcatgaattaaccctacg	CRISPR spacer
tggtaggggtaattcatgaattacccctacc	Protospacer
.. .. ** ************** ******

58. spacer 7.15|718810|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to MK994522 (Methanobacterium virus PhiF1, complete genome) position: , mismatch: 10, identity: 0.706

aaccctgattctaatgcaagagaattgacttcta	CRISPR spacer
atattatattctactgcaagaaaattgacttgtt	Protospacer
*  ..  ****** *******.********* *

59. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

60. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

61. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

62. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

63. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

64. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

65. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

66. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

67. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

68. spacer 7.33|720118|34|AP019314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gttcaaacgactgcgctcgattttatcgagtctg	CRISPR spacer
ttgccaacgactgcgctggatttgatcgatggca	Protospacer
 * * ************ ***** *****   ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP019314

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection