CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018921	Pseudonocardia autotrophica NBRC 12743 plasmid pPA12743CP DNA, complete genome	0 crisprs	csa3	0	0	3	1
AP018920	Pseudonocardia autotrophica NBRC 12743 DNA, complete genome	11 crisprs	csa3,WYL,cas3,DinG,PrimPol,DEDDh	9	7	8	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11782 : 47783

Corynebacterium_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG05632.1\|11782_13039_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.7e-79	43.2
BBG05633.1\|13070_13301_-	hypothetical protein	NA	NA	NA	NA
BBG05634.1\|13361_13583_+	hypothetical protein	NA	NA	NA	NA
BBG05635.1\|14336_15176_-\|transposase	transposase	NA	NA	NA	NA
BBG05636.1\|15404_16067_+	cytochrome c biogenesis protein	NA	NA	NA	NA
BBG05637.1\|16106_17018_+	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
BBG05638.1\|17018_18665_+	cytochrome c biogenesis protein	NA	NA	NA	NA
BBG05639.1\|18666_19656_+	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
BBG05640.1\|19797_20010_-	hypothetical protein	NA	NA	NA	NA
BBG05641.1\|20198_20441_+	hypothetical protein	NA	NA	NA	NA
BBG05642.1\|21228_22212_-	hypothetical protein	NA	NA	NA	NA
BBG05643.1\|22277_22589_+	hypothetical protein	NA	NA	NA	NA
BBG05644.1\|23596_24673_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.7e-160	78.7
BBG05645.1\|25005_25725_-	hypothetical protein	NA	NA	NA	NA
BBG05646.1\|26815_27775_+	hypothetical protein	NA	NA	NA	NA
BBG05647.1\|27764_27923_+	hypothetical protein	NA	NA	NA	NA
BBG05648.1\|27973_28450_+\|transposase	transposase	NA	NA	NA	NA
BBG05649.1\|28446_29457_+\|transposase	transposase	NA	NA	NA	NA
BBG05650.1\|29477_30371_+	glycosyl transferase family 2	NA	NA	NA	NA
BBG05651.1\|30367_31168_+	polysaccharide deacetylase	NA	NA	NA	NA
BBG05652.1\|31364_33113_+	hypothetical protein	NA	NA	NA	NA
BBG05653.1\|33109_33523_+	hypothetical protein	NA	NA	NA	NA
BBG05654.1\|33519_33726_+	hypothetical protein	NA	NA	NA	NA
BBG05655.1\|33784_35629_+	aminotransferase	NA	NA	NA	NA
BBG05656.1\|35625_36429_+	hypothetical protein	NA	NA	NA	NA
BBG05657.1\|36459_37776_+	hypothetical protein	NA	NA	NA	NA
BBG05658.1\|37828_39112_+	polysaccharide biosynthesis-like protein	NA	NA	NA	NA
BBG05659.1\|39383_40223_-\|transposase	transposase	NA	NA	NA	NA
BBG05660.1\|40925_41981_-	hypothetical protein	NA	NA	NA	NA
BBG05661.1\|41990_42830_+\|transposase	transposase	NA	NA	NA	NA
BBG05662.1\|42835_43180_-	hypothetical protein	NA	NA	NA	NA
BBG05663.1\|43228_43363_+	hypothetical protein	NA	NA	NA	NA
BBG05664.1\|43601_45089_+	putative oxidase (copper-binding protein)	NA	NA	NA	NA
BBG05665.1\|45241_45823_+	hypothetical protein	NA	NA	NA	NA
BBG05666.1\|46172_46562_-	hypothetical protein	NA	NA	NA	NA
BBG05667.1\|46628_47783_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

84324 : 195005

110

Mycobacterium_phage(25.0%)

transposase,integrase

attL 124460:124479|attR 178860:178879

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG05707.1\|84324_85242_+\|transposase	transposase	Q8W6R2	Burkholderia_virus	4.6e-26	34.5
BBG05708.1\|85285_85552_-	hypothetical protein	NA	NA	NA	NA
BBG05709.1\|85654_86059_-	hypothetical protein	NA	NA	NA	NA
BBG05710.1\|86547_87852_+\|transposase	transposase	NA	NA	NA	NA
BBG05711.1\|87888_88080_-	hypothetical protein	NA	NA	NA	NA
BBG05712.1\|88173_88836_-	hypothetical protein	G1FGB6	Mycobacterium_phage	7.0e-08	41.9
BBG05713.1\|89317_90271_-	hypothetical protein	NA	NA	NA	NA
BBG05714.1\|90363_91602_-\|integrase	integrase	NA	NA	NA	NA
BBG05715.1\|93463_94414_+	sporulation initiation inhibitor Soj	F0PIG8	Enterococcus_phage	2.8e-10	26.8
BBG05716.1\|94410_95040_+	hypothetical protein	NA	NA	NA	NA
BBG05717.1\|95491_95752_-	hypothetical protein	NA	NA	NA	NA
BBG05718.1\|95665_96094_+	hypothetical protein	NA	NA	NA	NA
BBG05719.1\|96483_97641_-\|transposase	transposase	NA	NA	NA	NA
BBG05720.1\|97706_98813_-	amidohydrolase	NA	NA	NA	NA
BBG05721.1\|98831_99965_-	hypothetical protein	NA	NA	NA	NA
BBG05722.1\|99971_100469_-	hypothetical protein	NA	NA	NA	NA
BBG05723.1\|100514_100946_-	hypothetical protein	NA	NA	NA	NA
BBG05724.1\|101322_101760_-	hypothetical protein	V5UN35	Mycobacterium_phage	1.9e-06	35.0
BBG05725.1\|101953_102544_+	hypothetical protein	NA	NA	NA	NA
BBG05726.1\|102540_102975_-	XRE family transcriptional regulator	NA	NA	NA	NA
BBG05727.1\|103323_104337_+	hypothetical protein	NA	NA	NA	NA
BBG05728.1\|104370_104688_-	hypothetical protein	NA	NA	NA	NA
BBG05729.1\|104590_105640_+	hypothetical protein	NA	NA	NA	NA
BBG05730.1\|105639_106911_+	hypothetical protein	NA	NA	NA	NA
BBG05731.1\|107001_109386_+	hypothetical protein	A0A1J0GVU2	Streptomyces_phage	3.6e-14	65.5
BBG05732.1\|109421_110345_+	hypothetical protein	NA	NA	NA	NA
BBG05733.1\|110344_111373_+	hypothetical protein	NA	NA	NA	NA
BBG05734.1\|111420_111744_+	hypothetical protein	NA	NA	NA	NA
BBG05735.1\|111743_112592_+	hypothetical protein	NA	NA	NA	NA
BBG05736.1\|112588_114424_+	hypothetical protein	NA	NA	NA	NA
BBG05737.1\|114473_116003_+	hypothetical protein	NA	NA	NA	NA
BBG05738.1\|115999_117688_+	hypothetical protein	NA	NA	NA	NA
BBG05739.1\|117696_118833_+	hypothetical protein	A0A1C9EHF6	Mycobacterium_phage	4.1e-32	37.0
BBG05740.1\|118885_119641_+	hypothetical protein	K7YGN1	Megavirus	1.9e-09	41.9
BBG05741.1\|119769_120405_+	hypothetical protein	NA	NA	NA	NA
BBG05742.1\|120456_121971_+	hypothetical protein	NA	NA	NA	NA
BBG05743.1\|121967_123842_+	hypothetical protein	NA	NA	NA	NA
BBG05744.1\|123838_124621_+	hypothetical protein	NA	NA	NA	NA
124460:124479	attL	NA	NA	NA	NA
BBG05745.1\|124916_125147_+	hypothetical protein	NA	NA	NA	NA
BBG05746.1\|125904_127290_+	hypothetical protein	A9YX16	Burkholderia_phage	1.4e-21	29.6
BBG05747.1\|127695_128667_-	transferase	NA	NA	NA	NA
BBG05748.1\|128616_128823_+	hypothetical protein	NA	NA	NA	NA
BBG05749.1\|129127_129535_+	hypothetical protein	NA	NA	NA	NA
BBG05750.1\|129539_129785_-	hypothetical protein	NA	NA	NA	NA
BBG05751.1\|129813_130236_-	MerR family transcriptional regulator	NA	NA	NA	NA
BBG05752.1\|130507_131083_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.7e-24	32.8
BBG05753.1\|131204_132692_-	sodium-independent anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	6.4e-118	52.4
BBG05754.1\|132928_134206_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-83	44.6
BBG05755.1\|134812_135787_+	hypothetical protein	NA	NA	NA	NA
BBG05756.1\|135876_136275_-\|transposase	transposase	NA	NA	NA	NA
BBG05757.1\|136261_138595_-\|transposase	transposase	NA	NA	NA	NA
BBG05758.1\|138567_139743_-\|integrase	integrase	A0A097EYL9	Mycobacterium_phage	1.6e-07	26.6
BBG05759.1\|139690_140506_+	hypothetical protein	NA	NA	NA	NA
BBG05760.1\|140502_140868_+	hypothetical protein	NA	NA	NA	NA
BBG05761.1\|140881_142150_+	acetylxylan esterase	NA	NA	NA	NA
BBG05762.1\|142717_143707_+	hypothetical protein	Q7M293	Enterobacteria_phage	2.0e-06	26.1
BBG05763.1\|143703_144402_+	hypothetical protein	NA	NA	NA	NA
BBG05764.1\|144635_145505_-	hypothetical protein	NA	NA	NA	NA
BBG05765.1\|145511_146096_-	hypothetical protein	NA	NA	NA	NA
BBG05766.1\|146098_146416_-	hypothetical protein	NA	NA	NA	NA
BBG05767.1\|146904_147192_+	hypothetical protein	NA	NA	NA	NA
BBG05768.1\|147188_148487_+	hypothetical protein	NA	NA	NA	NA
BBG05769.1\|148483_150451_+	hypothetical protein	NA	NA	NA	NA
BBG05770.1\|150599_151508_+	hypothetical protein	NA	NA	NA	NA
BBG05771.1\|151504_151939_+	hypothetical protein	NA	NA	NA	NA
BBG05772.1\|151922_152195_+	hypothetical protein	NA	NA	NA	NA
BBG05773.1\|152239_152434_+	hypothetical protein	NA	NA	NA	NA
BBG05774.1\|152882_153803_+	ATP-dependent DNA ligase	NA	NA	NA	NA
BBG05775.1\|153852_155460_+\|transposase	transposase	NA	NA	NA	NA
BBG05776.1\|155407_155623_+	hypothetical protein	NA	NA	NA	NA
BBG05777.1\|156287_157070_+	hypothetical protein	NA	NA	NA	NA
BBG05778.1\|157122_162060_-	hypothetical protein	NA	NA	NA	NA
BBG05779.1\|162434_162953_+	hypothetical protein	NA	NA	NA	NA
BBG05780.1\|163227_164121_-	hypothetical protein	NA	NA	NA	NA
BBG05781.1\|164243_164534_-	hypothetical protein	NA	NA	NA	NA
BBG05782.1\|164633_164951_-	hypothetical protein	NA	NA	NA	NA
BBG05783.1\|165096_165288_-	hypothetical protein	NA	NA	NA	NA
BBG05784.1\|165896_166472_-	hypothetical protein	S6BFL3	Thermus_phage	5.1e-07	35.5
BBG05785.1\|166602_167748_+	hypothetical protein	S5W9T9	Leptospira_phage	5.4e-08	28.7
BBG05786.1\|167807_168941_+	hypothetical protein	NA	NA	NA	NA
BBG05787.1\|168937_169285_+	hypothetical protein	NA	NA	NA	NA
BBG05788.1\|169281_171738_+	hypothetical protein	NA	NA	NA	NA
BBG05789.1\|171829_172183_+	hypothetical protein	NA	NA	NA	NA
BBG05790.1\|172175_174719_+	hypothetical protein	NA	NA	NA	NA
BBG05791.1\|174727_174976_+	hypothetical protein	NA	NA	NA	NA
BBG05792.1\|175001_175421_-	hypothetical protein	NA	NA	NA	NA
BBG05793.1\|175469_176144_+	transcriptional regulator	NA	NA	NA	NA
BBG05794.1\|176243_176645_-	hypothetical protein	NA	NA	NA	NA
BBG05795.1\|176711_177230_-	hypothetical protein	NA	NA	NA	NA
BBG05796.1\|177352_177709_-	hypothetical protein	NA	NA	NA	NA
BBG05797.1\|177804_178212_-	hypothetical protein	NA	NA	NA	NA
BBG05798.1\|178474_179242_-	hypothetical protein	NA	NA	NA	NA
178860:178879	attR	NA	NA	NA	NA
BBG05799.1\|179491_179707_-	hypothetical protein	NA	NA	NA	NA
BBG05800.1\|179703_180699_-	hypothetical protein	B4UTY9	Rhizobium_phage	1.3e-13	28.7
BBG05801.1\|181111_181894_-	hypothetical protein	NA	NA	NA	NA
BBG05802.1\|181890_182376_-	hypothetical protein	NA	NA	NA	NA
BBG05803.1\|182766_183378_-	hypothetical protein	A0A2P1N0E1	Streptomyces_phage	6.4e-16	44.4
BBG05804.1\|183540_183921_-	hypothetical protein	A0A2D2W3D6	Mycobacterium_phage	1.3e-06	43.9
BBG05805.1\|184039_184453_-	single-stranded DNA-binding protein 1	A0A1J0MC68	Streptomyces_phage	2.1e-07	34.2
BBG05806.1\|184808_185423_-	hypothetical protein	A0A1B0UZ37	Roseobacter_phage	9.0e-10	29.1
BBG05807.1\|185505_186084_-	hypothetical protein	NA	NA	NA	NA
BBG05808.1\|186108_186543_-	hypothetical protein	NA	NA	NA	NA
BBG05809.1\|186794_187295_-	hypothetical protein	NA	NA	NA	NA
BBG05810.1\|187380_189069_-	hypothetical protein	A0A2H4PED4	Mycobacterium_phage	1.8e-39	32.3
BBG05811.1\|189476_190817_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.2e-45	45.3
BBG05812.1\|190845_191763_-\|transposase	putative transposase for insertion sequence element IS986/IS6110	A0A1B3AZE5	Gordonia_phage	4.7e-103	63.6
BBG05813.1\|191762_192080_-	insertion element IS6110 uncharacterized 12.0 kDa protein	A0A1B3AZF8	Gordonia_phage	6.4e-36	72.4
BBG05814.1\|192147_192399_+	hypothetical protein	NA	NA	NA	NA
BBG05815.1\|192582_193221_+	hypothetical protein	NA	NA	NA	NA
BBG05816.1\|193283_195005_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

200385 : 228412

Burkholderia_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG05823.1\|200385_201594_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
BBG05824.1\|201759_203040_+	phosphonate metabolism protein PhnM	NA	NA	NA	NA
BBG05825.1\|203174_204338_-	MFS transporter	NA	NA	NA	NA
BBG05826.1\|204344_204854_-	hypothetical protein	NA	NA	NA	NA
BBG05827.1\|205202_205664_-	hypothetical protein	NA	NA	NA	NA
BBG05828.1\|205660_206428_-	hypothetical protein	NA	NA	NA	NA
BBG05829.1\|206520_207288_-	hypothetical protein	NA	NA	NA	NA
BBG05830.1\|207284_208412_-	hypothetical protein	NA	NA	NA	NA
BBG05831.1\|208862_209171_+	hypothetical protein	NA	NA	NA	NA
BBG05832.1\|209183_209477_+	hypothetical protein	NA	NA	NA	NA
BBG05833.1\|209488_210058_+	hypothetical protein	NA	NA	NA	NA
BBG05834.1\|210078_211356_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-83	44.6
BBG05835.1\|211457_211628_+	hypothetical protein	NA	NA	NA	NA
BBG05836.1\|211776_212028_+	hypothetical protein	NA	NA	NA	NA
BBG05837.1\|212105_213023_-\|transposase	transposase	Q8W6R2	Burkholderia_virus	4.6e-26	34.5
BBG05838.1\|213019_213394_-	hypothetical protein	NA	NA	NA	NA
BBG05839.1\|213733_215041_+	potassium transporter Trk	NA	NA	NA	NA
BBG05840.1\|215685_216030_-	hypothetical protein	NA	NA	NA	NA
BBG05841.1\|216136_216541_-	hypothetical protein	NA	NA	NA	NA
BBG05842.1\|216545_217889_-	hypothetical protein	NA	NA	NA	NA
BBG05843.1\|218083_218305_+	hypothetical protein	NA	NA	NA	NA
BBG05844.1\|218301_218589_+	hypothetical protein	NA	NA	NA	NA
BBG05845.1\|218645_219329_+	hypothetical protein	NA	NA	NA	NA
BBG05846.1\|219322_220339_+	tyrosine recombinase XerD	A0A0U4IA68	Gordonia_phage	1.5e-33	35.6
BBG05847.1\|220385_220586_-	hypothetical protein	NA	NA	NA	NA
BBG05848.1\|221067_222291_-	MFS transporter	NA	NA	NA	NA
BBG05849.1\|222372_222672_-	hypothetical protein	NA	NA	NA	NA
BBG05850.1\|222698_223163_-	hypothetical protein	NA	NA	NA	NA
BBG05851.1\|223166_223367_-	hypothetical protein	NA	NA	NA	NA
BBG05852.1\|223431_223782_-	hypothetical protein	NA	NA	NA	NA
BBG05853.1\|223778_224477_-	hypothetical protein	NA	NA	NA	NA
BBG05854.1\|224473_224881_-	MerR family transcriptional regulator	NA	NA	NA	NA
BBG05855.1\|225319_226177_+\|transposase	transposase	A0A0M5M147	Mycobacterium_phage	1.8e-69	50.7
BBG05856.1\|226212_227088_-\|transposase	putative transposase for insertion sequence element IS986/IS6110	Q8W6R2	Burkholderia_virus	1.8e-83	60.2
BBG05857.1\|227239_228412_+\|transposase	transposase InsI for insertion sequence element IS30A	W5R8L2	Staphylococcus_phage	2.0e-34	34.2

Anti-CRISPR protein detection

Acr_ID: AP018921.1|BBG05840.1|215685_216030_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

AP018921.1|BBG05840.1|215685_216030_-|hypothetical-protein

215685_216030_-

114 aa aa

200385-228412

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
AP018920_15	Orphan	15.2\|5163885\|16\|AP018920\|CRISPRCasFinder	5163885-5163900	16	213082-213067	2

1. spacer 15.2|5163885|16|AP018920|CRISPRCasFinder matches to AP018921 position: 213082-213067, mismatch: 2

gagaccgaccggcaga	CRISPR spacer
gagaccgagcgggaga	Protospacer
******** *** ***

2. AP018920

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: AP018920_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_1

132348-132460

Orphan

Consensus_repeat	Method
CGGGTCGCGACCGGGTCCGGCCGGTGGGCCGGGTTCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_1

>merge|AP018920|1|132348-132460|CRISPRCasFinder
CGGGTCGCGACCGGGTCCGGCCGGTGGGCCGGGTTCCGTGCGCCCGGGCTGTGATCGTCGGCAAACCGCCACGGCGGGTCGCGACCGGGTCCGGCCGGTGGGCCGGGTTCCGT

>AP018920|1|1|132348-132460|CRISPRCasFinder
CGGGTCGCGACCGGGTCCGGCCGGTGGGCCGGGTTCCGT	GCGCCCGGGCTGTGATCGTCGGCAAACCGCCACGG
CGGGTCGCGACCGGGTCCGGCCGGTGGGCCGGGTTCCGT

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBF98912.1\|127098_128541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379393
AP018920.1\|BBF98907.1\|122353_123343_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378964
AP018920.1\|BBF98908.1\|123487_124501_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197666
AP018920.1\|BBF98922.1\|136358_138416_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBF98916.1\|131153_132176_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|275309
AP018920.1\|BBF98925.1\|140524_141721_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340825
AP018920.1\|BBF98921.1\|135316_136264_-\|putative-UDP-glucose-4-epimerase-GalE1	unknown	unknown	gnl\|CDD\|187566
AP018920.1\|BBF98923.1\|138688_139978_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
AP018920.1\|BBF98915.1\|130666_131119_+\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|377187
AP018920.1\|BBF98927.1\|142738_144217_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225153
AP018920.1\|BBF98918.1\|132471_133311_+\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|369792
AP018920.1\|BBF98926.1\|141719_142742_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340831
AP018920.1\|BBF98919.1\|133598_134204_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
AP018920.1\|BBF98913.1\|128788_129421_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBF98911.1\|126743_127082_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240572
AP018920.1\|BBF98910.1\|125529_126684_+\|monooxygenase	unknown	unknown	gnl\|CDD\|225052
AP018920.1\|BBF98909.1\|124723_125533_+\|hydrolase	unknown	unknown	gnl\|CDD\|184875
AP018920.1\|BBF98924.1\|139970_140564_+\|acetylglucosamine-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|100048
AP018920.1\|BBF98914.1\|129424_130588_+\|glutathionylspermidine-synthase	unknown	unknown	gnl\|CDD\|367631
AP018920.1\|BBF98920.1\|134208_135294_+\|decaprenyl-phosphate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237058

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBF98912.1\|127098_128541_-\|hypothetical-protein	gnl\|CDD\|379393	pfam13845, Septum_form, Septum formation. This domain is found in a protein which is predicted to play a role in septum formation during cell division.	1.28333e-76
AP018920.1\|BBF98907.1\|122353_123343_+\|hypothetical-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	7.69521e-20
AP018920.1\|BBF98908.1\|123487_124501_-\|hypothetical-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.51843e-22
AP018920.1\|BBF98927.1\|142738_144217_+\|hypothetical-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	1.53427e-18
AP018920.1\|BBF98916.1\|131153_132176_-\|glycosyl-transferase	gnl\|CDD\|275309	TIGR04516, probable_glycosyltransferase, glycosyltransferase, activator-dependent family. Many biosynthesis clusters for secondary metabolites feature a glycosyltransferase gene next to a P450 homolog, often with the P450 lacking a critical heme-binding Cys. These P540-derived sequences seem to be allosteric activators of glycosyltransferases such as the member of this family. This model describes a set of related glycosyltransferases, many of which can be recognized as activator-dependent from genomic context.	1.80513e-26
AP018920.1\|BBF98921.1\|135316_136264_-\|putative-UDP-glucose-4-epimerase-GalE1	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.19874e-113
AP018920.1\|BBF98923.1\|138688_139978_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	1.9592e-120
AP018920.1\|BBF98915.1\|130666_131119_+\|DUF350-domain-containing-protein	gnl\|CDD\|377187	pfam03994, DUF350, Domain of Unknown Function (DUF350). This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.	1.12923e-06
AP018920.1\|BBF98918.1\|132471_133311_+\|haloacid-dehalogenase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	5.58687e-65
AP018920.1\|BBF98926.1\|141719_142742_+\|hypothetical-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.52995e-11
AP018920.1\|BBF98919.1\|133598_134204_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	9.64336e-19
AP018920.1\|BBF98925.1\|140524_141721_-\|hypothetical-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.47104e-17
AP018920.1\|BBF98911.1\|126743_127082_-\|hypothetical-protein	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	5.03232e-44
AP018920.1\|BBF98910.1\|125529_126684_+\|monooxygenase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	5.66799e-43
AP018920.1\|BBF98909.1\|124723_125533_+\|hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	4.72783e-24
AP018920.1\|BBF98924.1\|139970_140564_+\|acetylglucosamine-1-phosphate-uridylyltransferase	gnl\|CDD\|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	4.58264e-45
AP018920.1\|BBF98914.1\|129424_130588_+\|glutathionylspermidine-synthase	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	0
AP018920.1\|BBF98920.1\|134208_135294_+\|decaprenyl-phosphate-phosphoribosyltransferase	gnl\|CDD\|237058	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase.	7.89299e-144

>AP018920.1|BBF98916.1|131153_132176_-|glycosyl-transferase
MLVACGGEALPIGGTGPLPFIDVARNLRIGRLAARSLVAHPVTARAELAGRGGDAGVRSLFGPVNEELTDALVTVAEQWRPDIVLHEPLAAAGALAAARHDVPAVLHENGLLDGLATTRVLLDSRPLQRARARHGVRVVPPPAMVLTITPQSLAGARDALAVRPGRAGGGGPLPAWLKAPSVRPRVLVLRGGGPMRGDLQASALRVVAAAEGLDCELVLVRPPARLARRAGPGVRSVGRVAHAELLPACAAVLHGGSAGHVLAALAAGVPQLVLPGPGDRRYNAELVDARGAGIGGAVTEDALRRLVHDGEIAAAAREVRGEIAAMPSPQARVDIVAALA
>AP018920.1|BBF98915.1|130666_131119_+|DUF350-domain-containing-protein
MILAQALDATYWGFLGRGIGAILLYAVIGTLMMLIGFWAIDLTTPGKLPQMVRAGLPNAVLITAAGMISMAFIIVLAIYSAYGSLLQGVISSLVFGLIGIIAQVGAVRLLEWVTGIDIGEIIQSEEPRAAAKVVAAAHVALGLIVAVAVF
>AP018920.1|BBF98914.1|129424_130588_+|glutathionylspermidine-synthase
MRRERSTPRPDWQRIVADQGMVFGSPGRDGSGGERPYWDESVHYTFEMDEILSLEADVEVLHSMCLSAVDHVVTTERFADFALPEWSWQAVTDSWRRSDPYLYGRFDLRYDGSGPAKLLEYNADTPTSLLEASIPQWYWLQDTHPGDDQWNSLHEKLVERWAEIKAGLPSAEVHFTWSGAESTGEDHITVGYLQETAAEAGIDTVGLSIEDIGWDSALDRFVDLEEVPMSSVFKLYPWEWVLSDEFGKHVTRSLPETLWLEPLWKSLLSNKALLAVLWEMYPGHPNLLPASLGNPGILTEYVRKPLLGREGANIQIVAPGYETATGGVYGDEGFVYQMFDPLPEFDGFRPVLGAWLVGDTAAGLGIRETAGLITDDGAAFVPHRIPS
>AP018920.1|BBF98913.1|128788_129421_+|hypothetical-protein
MTDGRHSGGEDRPESGAFPQPGETAGQRGRIRHQDGSTAPREPTLAEKRAREQKLRADREEVLRREARSKTTKRVLIGTGATVGVVALIAAVYAASGGGTETVEARCVDENQVVVPDENCAGTSQNGQVNTGGGFAFVPIFLGGGGRQYHYNYGGTGSVGQVATGGTVNPPPSRGTTVRSGTTGSTISRGGLGVGGSSTSSGGSGTSSGS
>AP018920.1|BBF98912.1|127098_128541_-|hypothetical-protein
MDPSSPTGSAPRRHADPGPADTGEQVYDGYDGRYARAAHGGASSHSDAAHGGASHSGASHGGAPGGTTSVLARPTGGPASPVAPTRRRRGTDDGAGAAVSHDHGRERGPLGARRVGIGILIGAFLMLTVASLDSLLGAEVPVLGSFASSGVPPRVEAPPSLPPPPDTAGTCLNWNRDDATDTAAVDCAQPHLFEQAGRVALADQAVFPTDQAWQTLVAERCTPVVTQYLNDKFDPDGKFRVGALKPSQQRWDEGDKGMRCGLQMASRSSAMLPITGRVAEQDQSAVQPAGTCLAIDGRTVGDPTDCAGPHAVETVGVVDLGTEFPEAFPTVEDQDAFLQPTCTEAANTFAGNDQVIAEKKLTVYWGNLSEASWNAGSRKVNCNIGTLLPDGSGFASITGSVRGNLVVGEQPAPPEATAPGAPADPAAPADPSAPADPSAPGGDTPVEQPGSGQPAAPDGGAEQPPPSDLDVPPGLPGLGN
>AP018920.1|BBF98911.1|126743_127082_-|hypothetical-protein
MTPDRFEDLVGNALDLVPEQLAAAMDNVVVLVEDRNPDEPDLLGLYEGVALTERTADYAGELPDRITIYRDAVLDFCDDEEQVVDEVAITVVHEIAHHFGIEEERLHELGWG
>AP018920.1|BBF98910.1|125529_126684_+|monooxygenase
MKFNFFHLMPYPYLPDDFDDLEKYPSMSLTYSNGNFDPARGVQLYHRYLDELEYADAVGFDGIVVNEHHQSGYGMMPSPNIMAAALARRTSNSSILVLGNAIPIRGNPLRVAEEVAMLDHLTNGRLVSGFVRGIGWEHFAHSVSPAESRSRFNEAFDLIRKAWTTPGPFEWVGEHYEYRYVNVWPRPLQSPHPPIAVPGAGSPETMRWVAENRFLYVSVYAPTAVVKTWFDGYRGAAADIGYEVEREKIALAVPVFIGENERSAHEEARRHVEWLFHKGLRQSLEMVFPPGYMSPPALRGLLKANLKPYPELSYSELVEQGYVIVGGPESVRNRIGELRDELGFGQMMTMLAIGDMPAELVRRNTDLFASEVVPHFRTALATAG
>AP018920.1|BBF98909.1|124723_125533_+|hydrolase
MTDVVEGPAVARTLAAGSGSISYFRSGSGHPLLFLHAAGGAGMWGPFHERLSGSADVIAPDHPGWGGSDDLPELRGVDDLVYHYLDVLDRLELDRVDLVGASFGGWLAAELAVHSPERFRSLVLLGPVGLRIPGHLVADLFLMTPPQLIAALYHDPALVEQILSVAPETDQIIATYRELGSLARFGWRPFLNNPRLESRLHRISMPTRVIAAGEDRIVPRVHCERYAAGIPDAELVVVDDCGHALYGERPDAVADAVSTFLTERAGGRS
>AP018920.1|BBF98908.1|123487_124501_-|hypothetical-protein
MEASMAGSAPSDVTRPDARRLSRGTGFSTPDPRRARTRTEAFLDCAHAMAVRDESRFRAQVRFASVGGIGLLATTYRTPVAITCVPPIPWVTLNFLSTGSAVSSVEGSPPLALDADRATVFTYDRPLTIRMSPEAYQLMVLIDRRRLETALERMLGRRPAGPLSFEAALDVGSSSVTAAVSMLLHVLRTSPSGRPPPAVAAEAERSLVSALLLGQRHRHTRALFAEPERPPPRTVARVVELIESSTDESLGVADLAREAGISERALHAAFRRHTGSTPMAYLRRVRLDRVRAELAAADPVTGSVTEVALRHGFGHLGRFAAAYRARFGESPSTTLRR
>AP018920.1|BBF98907.1|122353_123343_+|hypothetical-protein
MADPEATAACRPTGPLAAHPLLRSSDPDEIRSRAVALLNGHSMRLSDRAARLCADIRGVQVAGLRLMAFRYGAGVEIGAPPLDDFVTIHLPVRGGFRLEHLGRSVAAGVDRGAVISAVAPLRMEWSADLVLLVVRLERAALRERWAAVLGEQVDADPVFEPAVDAGSALPGAVRALFGAVEASGPAGLRPTVAAEFERTIGSLLVLEHRHSSSEQLTRHLALPSPRVLRDALAHLDTNPDRAVPVAELARVAGVGERTLLAVFRRHLGTTPAAHSRRIRLDRARRDLLGGGPHASVTRIALDNGFAHAGRFAAAYRARFGEHPSVTLRR
>AP018920.1|BBF98918.1|132471_133311_+|haloacid-dehalogenase
MIADKPPRLVATDVDGTLLDDRDDVSPRTAAVLSRLVDAGTGFVLVTGRPPRWIPPVVAKLPPGMVRLCVCANGAVLYDAVDDVLLGARTLEPDAVRRLAALAGKLFPGCGLGVERVGNSATSRVELGTVDEFLTGPGYVHAWGDHDGGPVSPDELLARPVTKLLIRAPELTSEQMMTTLEPEIGGIADLTFSHPSGLLEASAPGVTKATGLADVAARLGVTAAETIAFGDMPNDREMLRWAGIGVAMGNAHPDLVGLADEVTAPNSRDGIAEVLERWF
>AP018920.1|BBF98919.1|133598_134204_+|phosphatase-PAP2-family-protein
MADTLDRPGPHPTSDASPAPAAPASGETAVLARVQRALANGPSVRVARGMSLFGEHAAGWLAIGVTGAVLDRPRRREWLGSAAAVAFAHGASIGVKRVVRRRRPDHPSVRVLVGTPSRLSFPSSHATSTTAAAVLYGGLLGGRSRAAAAATVGLMALSRLVLGVHYPTDVATGTALGAAVATGARPVIRRSAARRNPTSGG
>AP018920.1|BBF98920.1|134208_135294_+|decaprenyl-phosphate-phosphoribosyltransferase
MTSTDRTRVESAGDDRDAPADSKAAVAEVADPTTPVEPDAPDDAGAPEGHAADAVGGAPPPHVPLDPSERTPTMVARGLVRTMRPRQWVKNVLVLAAPFVGGGLFDTSVLIDCLVAFVAFSLASSGVYLVNDALDVEADRAHPTKRRRPIAAGIVPLPLAYVAAGVLFVVSIGLAVLVTWQLIVVLAVYVAVQLSYCLWLKHQPVIDICIVASGFLMRAIAGGVATAIPLSQWFLLVAGFGSLFMVAGKRYAEMTLAAQTGAKIRKSLESYTSSYLRYTWSLSATVMIMTYSLWAFEIRETHHNTVWSVLSIVPFVIAVLRYSVDVDRGTGGEPEEIALGDRVLQVLAVAWLAMLTLAVYS
>AP018920.1|BBF98921.1|135316_136264_-|putative-UDP-glucose-4-epimerase-GalE1
MRALVTGGAGFIGSTLVDALVARGDEILVVDDLSAGKRENVPAGVELVELDIRDAGALAGLAGRFRPDAVYHLAAQIDVRTSMADPLHDASVNVVGTLSVLQAAQASGAGAVVVCSTGGAIYGDGAPLPTTESEPADPESPYGLSKLAAERYTRFFVRAHGLPALVLRFANVYGPRQHPAGGAGVVSLFCDRARTGGRPTVFGDGGQTRDFLFVGDIARAALAAADRLAAGELAGEVFNVGTGTESTITELAATIGRVAGLDQAAFAPEFEPARPGELRRSCLDPSRGLAALGLPEPTTLAEGLAATWAWHTARS
>AP018920.1|BBF98922.1|136358_138416_-|hypothetical-protein
MTWAAAVPAALVTAVWCVLPGMLVARAAGWRGIACWGSAPLISIALIATTAIGAGRIGVPWGPWPVVVTSVAVAAAVLAVRAAARISARRRSASPESVDASPPAAGTGSRWAFLHRSGPDGGHAGLALAVGMGVTIAISWLTVVLAFGPVDAISPTYDAVHHYNAVARILDSGDGSSLTVGELTTPGQPSVYPAAWHDLVALVVLTSAAAIPVASNLVALAVAALVWPLSCVLLLRQLVGRRPGAFLAGPILATAFTAMPWMVMTWGVLWPNLLGLALVPAGLAAAVTVIGLTRDSTIGRPAATVLGVVAAPAIALAHPNAVTSLLVIGLSPVVCAAVVSAVRLFRERRPLRAAAALIAAGAVAMAVLWFLAWSPFLAGVRSFDWPATMGAREAVLGVLWNAMNQRPELFIVSVLVIVGAVFALRSPLTGWLVPAHATTGFLYVLAVSREGALTTALTGAWYNDSYRIAAMLPITGVPLATIGVLGIAGLLVRAALRLRRVDPTAERRRMLALPVTAAVIAALVLASDGFRIGVHAYTVAGTYQREATWMLQPGQREFLDAAGQLVPPDGLVAANPWTGNALLYALTGREVMFPHMSGRWTPDQQVVKEHLRDAGEDRSVCEAVRSTGLTHVIDGPVSYWPWDERAHAFPGLTELGQTPGFEPVASGGGSTLYRVTACDPGPPPG
>AP018920.1|BBF98923.1|138688_139978_+|nucleotide-sugar-dehydrogenase
MQIAVIGLGKIGLPLAAQFASKGHTVVGVDIAPDVVRLVNEAIEPFPGEAGLADALAEFVPAGALRATTDYADAVPTADAVVLVVPLFVDDDARPDFRSLDAATEELAAHLTPGTLVSYETTLPVGTTRDRWKPMLEKGSGLAEGIDFHVVFSPERVLTGRVFADLRKYPKLVGGLSPAGAERAVAFYAAVLDFDGRTDLPRPNGVWDLGSAEASELAKLAETTYRDVNIGLANQFARFAGAAGIDVQRVIEAANSQPYSHIHQPGIAVGGHCIPVYPRLYLWNDPDATVVRAAREANASMPAYTVGLLEGAFGDLTGARVAVLGAAYRGGVKETAFSGVFPTVAALRDRGAVPQVHDPLYSDDELAALGLDPYHLDEPVDAAVIQADHAGYAELGPDRLPGLRVLVDGRRISSADRWPGVTYRVIGRA
>AP018920.1|BBF98924.1|139970_140564_+|acetylglucosamine-1-phosphate-uridylyltransferase
MPEPYVAPGADVAGSARLGDGVKVWHLAQVREDVELGANSIVGRGAYIGTGVRVGENSKIQNHALVYEPAELAAGVFIGPAVVLTNDTFPRAVNPDGTQKSASDWDSVGVTIGEGASIGARAVCVAPVRIGAWATVAAGAVVTRDVPEHALMVGVPARRVGWVGRAGVPLVEQDGQWRCPSSGAVYTEDGGSLRETG
>AP018920.1|BBF98925.1|140524_141721_-|hypothetical-protein
MVDGAPRRRILCISFSDITADARVLRQLDVLAELGEVTTVGYGDRPDAATEHLAIDPALPSLPQTAAGVLLLAARRFDRVEFEGPAVQAALSMLGGRRFDVVVANEARAMALAHRVADGSPVLADLHEWAPEERAHVTSWRLLVRPFMFHQCAKYLPLMSAVTVVNGSIGEMYRERFGVRCRVVRNAGPQHELEPQPLLDGRIRLVHSGGAIPGRNLEALIEAVRGLGAGHTLDLYLVPSRDGGRYLGKLRELIGGDPRITLHDPVRPQELAPTLNAYDVGVFSLPPLTPNHRLMLPNKIFDFVQARLAVVFNSAPETDRLITGHGFGTIAPDHTAAAMRDTLAALTPEQVAGYKQAAHRAAAVLNSTEDAAVTRAAVTELLGDGAQPVSRSEPPSSV
>AP018920.1|BBF98926.1|141719_142742_+|hypothetical-protein
MAPESRDLPVSTIARMSSPSVLHVNDAAFTAERMITEAVRRGLDWSLMPKAAPAREWRGITGRVRRAVIGGAWVARLAVAARQHDIVHVHSASTLAHSRLGAPRYVVHCHGTDVRTTQYDPARRASVVDGLLRAEAVLYSTPDLAEHVLVHRPDAVYLPVPIDVDAVPEWAPGARPQVVFASRWSPDKGVATQLVVVRDLVARFGDRVDLVGLDWGPCAAEAAEAGVRLVPRSGHADYLALLAGASVVVGQSAGILAASELEALAAGAPVVVPVPLPLYDRPPVLAVQAGEAADAVASVLDGDHPHDPAAVRGWTRSVHGVVSAVDMVTGLHRTVLASRG
>AP018920.1|BBF98927.1|142738_144217_+|hypothetical-protein
MTGIRPVLGRMFTPVRLDDPTPTSLTRGGALAVTGLVAQGVLRFATSWLVGRLAGEAELGVVASAIAAATILALLWPTSTGSAASKFLARARGAGSIDQTRSVAAHLRRRMLLAVLVLAAAAIPVWVYLDGGSLTGALAVALLTIGYSGYSFTRGVQFGTGQTLRATGWDVLCVALGLVTLTLMLLSGVRGVALVLPLAVAYGVYALAGWPFGGGGKPEPARRREMDGFVALGAVGSLASAGFLQLSQIVTRLVSGDEGAGVYAAAVALATPASMLAVSLSLVLLPALSETLGRADEEAFRSRTDQANRSLAVVVVAIFGTIALCSRLLIRVVWGDAYAGAAPILAVLAVAVLFTTLGVVAVNAMTARSQRGMAINVAASLTGMAVGAGVWFVVAPSLGGIGVAAGYLAGTLVIAGVPVAVVWRTCRQRWGGLYARVALALGLLVLLHEMQERFDLTLWLDPVAAVGFVAVWLVLNRADAARLPRPRLPGRS

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Crispr_ID: AP018920_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_3

1284517-1284602

Orphan

Consensus_repeat	Method
CGCCGGGCTGAGCTGCGGCGCGGTCGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_3

>merge|AP018920|3|1284517-1284602|CRISPRCasFinder
CGCCGGGCTGAGCTGCGGCGCGGTCGCCGCCCGCCGGGCACACACCTACCGGGTGACGCCGGGCTGAGCTGCGGTGCGGTCGCCGC

>AP018920|3|2|1284517-1284602|CRISPRCasFinder
CGCCGGGCTGAGCTGCGGCGCGGTCGCCGC	CCGCCGGGCACACACCTACCGGGTGA
CGCCGGGCTGAGCTGCGGTGCGGTCGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG00056.1\|1291857_1292490_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
AP018920.1\|BBG00054.1\|1290237_1290894_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225168
AP018920.1\|BBG00045.1\|1280145_1280835_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
AP018920.1\|BBG00059.1\|1294652_1295570_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225097
AP018920.1\|BBG00048.1\|1282326_1283274_+\|hydrolase	unknown	unknown	gnl\|CDD\|368185
AP018920.1\|BBG00055.1\|1291116_1291851_+\|membrane-protein	unknown	unknown	gnl\|CDD\|372611
AP018920.1\|BBG00047.1\|1281766_1282252_+\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|235455
AP018920.1\|BBG00039.1\|1274678_1274921_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00052.1\|1286762_1288229_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|225588
AP018920.1\|BBG00046.1\|1280835_1281738_+\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|225088
AP018920.1\|BBG00051.1\|1285710_1286439_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376705
AP018920.1\|BBG00044.1\|1279386_1280091_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319988
AP018920.1\|BBG00042.1\|1277699_1278251_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
AP018920.1\|BBG00053.1\|1288337_1290014_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238038
AP018920.1\|BBG00041.1\|1276224_1277313_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
AP018920.1\|BBG00040.1\|1275043_1276216_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
AP018920.1\|BBG00058.1\|1294007_1294526_-\|gluconokinase	unknown	unknown	gnl\|CDD\|225804
AP018920.1\|BBG00043.1\|1278283_1279390_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
AP018920.1\|BBG00057.1\|1292557_1294003_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
AP018920.1\|BBG00050.1\|1285445_1285637_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG00056.1\|1291857_1292490_-\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	1.3683e-37
AP018920.1\|BBG00054.1\|1290237_1290894_+\|hypothetical-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.04466e-06
AP018920.1\|BBG00045.1\|1280145_1280835_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	1.76678e-119
AP018920.1\|BBG00059.1\|1294652_1295570_+\|hypothetical-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	2.9993e-46
AP018920.1\|BBG00048.1\|1282326_1283274_+\|hydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	1.2259e-26
AP018920.1\|BBG00055.1\|1291116_1291851_+\|membrane-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	4.12898e-15
AP018920.1\|BBG00047.1\|1281766_1282252_+\|SsrA-binding-protein	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.45494e-87
AP018920.1\|BBG00052.1\|1286762_1288229_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|225588	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].	1.02809e-145
AP018920.1\|BBG00046.1\|1280835_1281738_+\|cell-division-protein-FtsX	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	7.85987e-56
AP018920.1\|BBG00051.1\|1285710_1286439_-\|hypothetical-protein	gnl\|CDD\|376705	pfam01988, VIT1, VIT family. This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron transporter VIT1.	3.22519e-69
AP018920.1\|BBG00044.1\|1279386_1280091_+\|hypothetical-protein	gnl\|CDD\|319988	cd16334, LppX-like, family includes lipoproteins LppX, LprA, LprF and LprG from Mycobacterium tuberculosis. This family includes the homologous lipoproteins LppX, LprA, LprF and LprG from Mycobacterium tuberculosis (Mtb), all of which share a core fold with lipoprotein transporter proteins LolA and LolB. Mtb contains components such as glycolipids, lipoglycans and lipoproteins that play critical roles in regulating host responses and promoting survival of the pathogen. Mtb LprA is a lipoprotein agonist of Toll-like receptor 2 (TLR2) that regulates innate immunity and APC function. LprF, which is also found in Mycobacterium bovis but not in the nonpathogenic Mycobacterium smegmatis, has a central hydrophobic cavity that binds a diacylated glycolipid that it transfers from the plasma membrane to the cell wall, which might be related to the pathogenesis of the bacteria. Similarly, LprG functions as a carrier of glycolipids and lipoglycans, such as lipoarabinomannan (LAM), during their trafficking and delivery to the mycobacterial cell wall, contributing to virulence; LAM inhibits fusion of phagosomes with lysosomes as a means for mycobacteria to evade host defense. In addition, LprG has potent TLR2 agonist activity that modulates antigen processing of dendritic cells and macrophages. LppX is required for the translocation of the key virulence factors, the phthiocerol dimycocerosates (PDIMs), to the surface of Mtb.	1.02653e-08
AP018920.1\|BBG00042.1\|1277699_1278251_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	9.14451e-06
AP018920.1\|BBG00053.1\|1288337_1290014_-\|hypothetical-protein	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	1.38044e-11
AP018920.1\|BBG00041.1\|1276224_1277313_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.97023e-32
AP018920.1\|BBG00040.1\|1275043_1276216_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.02825e-126
AP018920.1\|BBG00058.1\|1294007_1294526_-\|gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	8.18491e-75
AP018920.1\|BBG00043.1\|1278283_1279390_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
AP018920.1\|BBG00057.1\|1292557_1294003_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.14566e-75
AP018920.1\|BBG00050.1\|1285445_1285637_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	7.1491e-09

>AP018920.1|BBG00048.1|1282326_1283274_+|hydrolase
MDLPVPPRDDADVPRWTAELGLPGLVDVHVHFLPERMLHKVWAYFDEARTHYGTDWPVQYRLPEQQRYEVLEQLGVLAFAPLTYPHKAGMGEWLTGWAGEFADAHPRAVRTATLFPEPSVADYLGRAVEAGARMVKVHVQVGAFDPRDPLLRDAWGLLADAGIPAVVHCGDGPIPGRHTGLGIFAEVLEAHPSLRIVLAHAGMPDFRGALELLERFPNLVLDTTMVGTAFSERIAPLPADWPAQLARFPGRIVLGSDFPNIPYPYAEQLAAIHDWATAEPRLGQSFLRSVLYEAPAELLGVRDGLPSPSIQESPW
>AP018920.1|BBG00047.1|1281766_1282252_+|SsrA-binding-protein
MKEKGRKVIAQNRRARHDYAILEEFEAGVALKGTEVKSLRLGRASMVDAFATIDDGEIFLRGLHIPEYVRGSWTNHEPRRTRKLLLHRGEIDRLMGKTREGGLTLVPLSLYFNDGKVKCEIALARGKKDYDKRRDLAKKDAQREIARAVGRAAKGRARSLG
>AP018920.1|BBG00046.1|1280835_1281738_+|cell-division-protein-FtsX
MRPALLTREVSSGLRRNVTMTVAMVLTTAVTLMSVGAGLLVLRTIDDISTLYTNRLEIQVALTADVSGSDQDCSEPTCASLRSAVETAPGVAAVTFESQEEAYTRFRELFAGQSVADVARPQSLPATLRVTLTDQEAGPAAVRAAVAERPGVRGVIDQRDVVGTLFDFLGGVRNVAFALAVVQAFAAVLLISNTVQVSAFTRRTEVGVMRLVGATRWTTQLPFLVEAAIAGAIGGALAGAGLVAAKYAVVDDLVAAIGQAGVIPPVRLTDVLLVSVLLVPVGAVVAGVTGYVTLRAYVKV
>AP018920.1|BBG00045.1|1280145_1280835_+|cell-division-ATP-binding-protein-FtsE
MIELQDVTKRYPASGRPALDRISLTVAAGEFAFLIGPSGSGKSTLLRLLLREDVPTSGIIRVDGRDVARLPRRKVPGLRQRIGCVFQDFRLLPKRSVAGNVAFALEVLGRKPAEIRTAVPELLEMVGLQGKAERMPHELSGGEQQRVAIARASVNRPPLLLADEPTGNLDPDTSREIMQVLERINRGGTTVLMATHDDSIVDAMRRRVIELSDGTVLRDESHAVYGAGR
>AP018920.1|BBG00044.1|1279386_1280091_+|hypothetical-protein
MIRGSRASLVVLGAVLAVLLAGCTGGDSAAGPDPSPTPQDVVTGAGTALVEAGTARVTVTLDGPTGPLSGGGPVRFDPFAADLTVALGTRGAHVRVLDDDAWLRLGGAEQWQRVSTDLLPIGALSGALHATSGLRDVTEQGPEDVNGVPAVRYAGTVDLTAARDAAPGSAEATRLDELAGLVSPNPGFGAWIGAPGTEQDGRLLQLRLEPAEAATGTVTLTFAEPGLPVDVTAP
>AP018920.1|BBG00043.1|1278283_1279390_+|peptide-chain-release-factor-2
MNPDVQADLKDLDTTLSSIEAVADVPALRQEIEELSEQAGRPDLWDDVDAAQKITSRLAHAQGELRRLDDLRRRLDDLPVLYELAEDEDDSSAIADADADRTRLRTEIASLEVRTLLSGEYDQREALVTIRAEAGGVDAADFAEMLLRMYLRWAERHGYGTDVYDTSYAEEAGIKSATFAVHTPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAGVEVAPVVEVTDHVEIDEKDLRVDVFRASGPGGQGVNTTDSAVRLTHIPTGIVVACQNERSQLQNKASAMTVLQAKLLERRRQEERELRDSFKDAGSSWGNQMRNYVLHPYQLVKDLRTDHEEGNPSQVLDGEIDQFIEAGIRWRRQQADAS
>AP018920.1|BBG00042.1|1277699_1278251_+|PadR-family-transcriptional-regulator
MDSRSGPVRGTVNVMALVTPVNATAAALLGLLHGGPMTGGQLVTAAGERFGLFFSVTRSQVYRELPALTEEGLLRLGKQGPRASQQYVVTAAGKRAFKAWLAAGGDADAVRSPLVLRLLHAGSLTVKQRTELLRAAREAYAERLAAARAAAKATTDPYGRPVADFAVAHTRAMIKLIDAVPED
>AP018920.1|BBG00041.1|1276224_1277313_+|acyl-CoA-dehydrogenase
MYFALTDTQREFDRAVRDYLAQRFDLAAVREVVESADESGGSEGSGDSDGAAGAERSAGSGGNPASLWAAAGEQGWLAVTVPEEYDGLGLGLVEAQVIARALGAGVAPGPWRGTVLAAEAIRLAGSDTQRATWLPRLAAGEVVGAFASRGSAADGLPAVEYGATADVVVAPAEDGVPGLVLITGASATPVGSYDGTTRLAGLTGGSAEVLPGATVEVARELADRATVLVAADLVGIAREALSRTVGYDREREQFGVPVGSFQAIKHALADLHVGVTMAEHAALYASYAVQEGLDGADLAVAVAKAKANDVALQATAAMIQYHGGIGYTWEHEAHFFYKRARRLAGQWGDLTVARERIAALTM
>AP018920.1|BBG00040.1|1275043_1276216_+|acyl-CoA-dehydrogenase
MDLTFTPAEEEFRSELRSWLSAHIPQEWTRPGFWESLDDDESFRLRRDWERDKADAGFAGIQWPIEYGGRGGTPGMKAIYDEETVRAHAPRTVNPLGLAFLAPTVMAIGTEAQKKEIIGPLLRNEVIWCQGFSEPGAGSDLAALSTKGIRDGDDFVVNGQKVWTTNAVHGDKIFTMVRTEAGSAKHRGISMLLIDMDQPGVTARPLRQMSGASEFGEVFFDDARVPAVDCLGEIGDGWRTAMLLLSFERGASGISQYTEFRRQYDEIVAVARTLGRDTDPVIRNELARVLTELECLRLHSMHVLTQVEQGRDLGFEASMTKLQWSETFQDLWEVYDQILGADATLDTLPDGTDLRPLHAQAMWSRSVTIWGGSSQVQRTITAERVLGLPR
>AP018920.1|BBG00039.1|1274678_1274921_-|hypothetical-protein
MRSERVTVTLPAELVAEARDAVSRGSAASLSAYVAEAVQARQHRDRSLATLASLYGGPPPADELDAARRSLRPIPPVAVG
>AP018920.1|BBG00050.1|1285445_1285637_+|ferredoxin
MHVSVDKDLCIGAGQCVVTAPDVFDQDDDGIVELLTDHPAETDHDAVREAEHVCPARVIAVEG
>AP018920.1|BBG00051.1|1285710_1286439_-|hypothetical-protein
MEDPELAAELAEHQHDHGHRDVSGGWLRAATFGAMDGLVTTIALIAGVGGGGADRDLIVLTGMAGVVAGAFSMALGEFASVGTQNDAVDAEASVERRELARHPRAEQYELAQTYREMGLSEQTAAAVAREVHADPELALRVHLTQELGVSLDSKPSPWVAATSSFAAFVVGGIIPLVTFLLGYSSLALGLAVGGIGLLVAGALTSRFTSRTWWGAALRQLAFGAIAAGATYLVGMLIGVSVG
>AP018920.1|BBG00052.1|1286762_1288229_+|deoxyribodipyrimidine-photo-lyase
MWLFADQLGPHVWDTDEHAGREIVLVESARALGRRPHHRQKLHLVLSGMRHLADQLGDRVTYLRTETYREALERIGRPVVVHQPTSFPASDMVRRFRQEGLVAEIRPTPTFALSKEEFDDWAGDRDTFRMEEFYRAQRERFEVLVDGDGPVGGTWNLDRENREPPPKGATSLDLTPPWQPSEDGIDEQVRAELDAAPWQMSGVDGPRRFAVTHGEATAALQHFVRYRLDTFGPYEDAVLARDWAMAHSLLSVPMNLGVLHPLDAVRAAERAYHDGTARLASVEGFVRQVLGWREYVWQLYWRFGRDYTRRNQLRARSPLPDWWTDLDADAVTARCLSSALADVRDRGWTHHIPRLMILGNHALQRGYRPVELNEWFATRFVDGFAWVMPANVIGMSQHADGGRMATKPYSSGGAYIDRMTDFCGGCAFDPKVRVGENACPYTAGYWQFVHRHRDLMASNNRTARAVATMDRLKDLDELLEQESARERY
>AP018920.1|BBG00053.1|1288337_1290014_-|hypothetical-protein
MFETWGSASSDGTGNGSGAGHLTPAPAPAPAPACDRDRPAAAAAAAEPVRWAERVPDTALVAVLARSPDRSASDTERLERIGAFERVIGWLQTLQDAEMCSFVTDAEGAMARFLDDRDPADGPPGPFDTVGHASRSATAEIQLMLHLTGAAMLRRIEHARRLHEPVHGPTIALARSGLLTLAKTRSILDGTADLTDEQAARLQAAVLPAAPQKTVGQLRAAIDRFLTALADREIPVRRRDRAIGSRSVELQSEPQGMATLRVFLPAAAVVGIYAVLDEHARRCGSSDPRTMDQRRADVLTDLVLRETGWTGTSAGTAGEHPECGAATAGAEPTGTGPATTGPTCALPGGYDAVRNSVSVRVNVTVSLDALLGRSDDPAELAGYGPLPVADARALAFDPDSVWYRLLTDPAGHVVHRDTTTYRPGAALTELVRARHGRCAHPGCRVPAHRCDLDHVVPHDPRTGAGPTSADNLHPLCRSHHVLKHMPGWRTVLLPDGTTEWTTPSGHVHRSEPEPAGSGGIGGTGGAGEPGRRGPSVLALLRDPGLADRLARSTAEAPF
>AP018920.1|BBG00054.1|1290237_1290894_+|hypothetical-protein
MRSARLRDIVGTAVRLALAVVWLVSGGAKLADPLQAAVAVDAYEILPPAAVPFVATVLPLLELALGGLLLLGVGTRLAAVVSVLLLIGFVAGLVQAWARGLSIDCGCFGAGGPVEAGEERYLSSLLRDLGFLALALWLSVRPRTLLAVDRVWDGGGRVGGDGADGDRVPDETVVGRGAPAGVGPEVDGTAVDDRPGADTAGAEPGSGRREYTGDERGR
>AP018920.1|BBG00055.1|1291116_1291851_+|membrane-protein
MGQSERERRAAAQARLHAAGITPPQGRGGAARGLMIGAVVLVFALASGLYLAWQNYSTGAEPAYPVTREGAVVRAGDQAAPVTVDVYEDYLCPTCQQFERIYRDQLARGMNDGKIKVNYHTIAILDDRSAPPGYSTRAGNAALCAVDAGIYPAYHSRLYVDQPRQGAAGLSVEQLTALGTELGATGDFGGCVAGQAGAQSIVDATDAAVANPAAAPGGRFATPTVLVDGVMADLANADWLSNIT
>AP018920.1|BBG00056.1|1291857_1292490_-|membrane-protein
MTIERKGGTLWSLRMPRRRRRLIQLLVGLVAYAFSMALMMRAGLGSMPWDVLHQGVALRTGLPIGTVIAATGVVVLLLWIPLRERPGIGTVANVVVIALVIDSALAVVPEVDGLWARAGLAVTGIVLNAAATAAYIGVGLGPGPRDGLMTGLAARTGRSVRVVRTAIEVAVVLTGWLLGGTFGVVTVAYALGVGPLIQWFLPWFTVRTPR
>AP018920.1|BBG00057.1|1292557_1294003_+|GntR-family-transcriptional-regulator
MDGIGAAALAGLCGDVRRGRGPVYRTLADAIRVLVGDGRLPAGTRLPAERSLAERLRVSRITVTHAYRELREDGWVDARQGSGTWVRLPDGPARVDGAWVPGPARGGVIDLAHAAPVAPPGMSELVRRAARRLDGELAGHGYGPDGHPDLRERIAARFTARGVPTDPDRIVVTGGALQAIGIAVAELTGAGDRVLVEHPTYPAVLDVLSDAGVRPVPVALGPGIEDALPRASRQTAARAAYLMADFQNPTGRLLDDDVRARLLHRLARQGTVAIVDETFAELDLREGATAPLPCAAHALREDDVVTVGGASKIAWGGLRLGWIRAAREPAARMRRRLARAQIAQPVLEQLIAVEVLDALDEIRGRRTAELRLRRDRLVGELAVVLPEWRPVVPDGGLVLWCDLGADLSTALTAVAPRHGLTLAPGPRFGTGYAFEDRLRLPFVHPEPVLTEAVRRLRRVLDDVVGTPVDAGRTGEPARLVV
>AP018920.1|BBG00058.1|1294007_1294526_-|gluconokinase
MTHPPHDLQRPPLIVAMGVSGSGKSTVGEALAERLDIAFTDADGLHPPANVAKMSSGVPLTDDDRWPWLDLVGAELAAHDADGLVVACSALRRSYRDRIRSHAPRTAFLHLAGAPEVLAARMAGRAGHFMPPALLLSQLDTLEPLTAGETGVTLDIDAPVDELVAAGAAALA
>AP018920.1|BBG00059.1|1294652_1295570_+|hypothetical-protein
MRRMNVGIEGNGAGLHADVVDRIGALVAGGGVPPGTVLRADELGERYGVSRTVVREAVRVLESMGLVQSRRRVGTTVAPRERWNVHDPQVIRWRLDGSERAEQLRSLAELRRGVEPVAASLAAARATPEQCGELVGAVMDMAVYARSGDLAAYLEADIRFHRTLLAASGNEMLAALGGTVAEVLAGRIRHHLMPAHPEPSAIRLHGDVADAIRCGDGTAAETAMRAILTEAASATRIDTEAASATRIDTEAASATRIDTEAASATRMDSGAASATRMDSGAASATRMDSGAASATRMDSGDARDR

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Crispr_ID: AP018920_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_4

1414855-1414914

Orphan

Consensus_repeat	Method
CGCCCCGGCCGCCTTCCTGAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_4

>merge|AP018920|4|1414855-1414914|CRISPRCasFinder
CGCCCCGGCCGCCTTCCTGAGCCCGGCCGTACCCCTGAGCCCCGGCCGCCCTCCTGCGCC

>AP018920|4|3|1414855-1414914|CRISPRCasFinder
CGCCCCGGCCGCCTTCCTGAGCC	CGGCCGTACCCCTG
AGCCCCGGCCGCCCTCCTGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG00176.1\|1415302_1415728_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377111
AP018920.1\|BBG00182.1\|1420402_1421332_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366166
AP018920.1\|BBG00179.1\|1417819_1419319_+\|peptidase	unknown	unknown	gnl\|CDD\|312032
AP018920.1\|BBG00178.1\|1416532_1417588_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
AP018920.1\|BBG00180.1\|1419424_1420051_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00168.1\|1408135_1408729_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366102
AP018920.1\|BBG00184.1\|1422298_1422658_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00175.1\|1414968_1415241_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369571
AP018920.1\|BBG00171.1\|1411730_1412735_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
AP018920.1\|BBG00164.1\|1403829_1404615_-\|carbon-monoxide-dehydrogenase	unknown	unknown	gnl\|CDD\|366378
AP018920.1\|BBG00165.1\|1404611_1406036_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
AP018920.1\|BBG00181.1\|1420113_1420356_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00166.1\|1406048_1407317_-\|hydroxylase	unknown	unknown	gnl\|CDD\|181262
AP018920.1\|BBG00169.1\|1408915_1409881_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|235736
AP018920.1\|BBG00170.1\|1409969_1411640_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200471
AP018920.1\|BBG00183.1\|1421217_1421994_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00173.1\|1413948_1414530_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
AP018920.1\|BBG00172.1\|1412743_1413871_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225193
AP018920.1\|BBG00167.1\|1407457_1407982_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224759
AP018920.1\|BBG00177.1\|1415756_1416533_-\|esterase	unknown	unknown	gnl\|CDD\|223700

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG00176.1\|1415302_1415728_+\|hypothetical-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	3.79607e-07
AP018920.1\|BBG00182.1\|1420402_1421332_-\|hypothetical-protein	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.6248e-08
AP018920.1\|BBG00179.1\|1417819_1419319_+\|peptidase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	2.81983e-16
AP018920.1\|BBG00178.1\|1416532_1417588_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.44532e-16
AP018920.1\|BBG00168.1\|1408135_1408729_-\|hypothetical-protein	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.15131e-11
AP018920.1\|BBG00175.1\|1414968_1415241_+\|hypothetical-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	9.95475e-06
AP018920.1\|BBG00171.1\|1411730_1412735_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.36388e-71
AP018920.1\|BBG00164.1\|1403829_1404615_-\|carbon-monoxide-dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	5.68043e-57
AP018920.1\|BBG00165.1\|1404611_1406036_-\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	8.15781e-61
AP018920.1\|BBG00166.1\|1406048_1407317_-\|hydroxylase	gnl\|CDD\|181262	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase.	5.52205e-71
AP018920.1\|BBG00169.1\|1408915_1409881_+\|oxidoreductase	gnl\|CDD\|235736	PRK06196, PRK06196, oxidoreductase; Provisional.	6.48087e-62
AP018920.1\|BBG00170.1\|1409969_1411640_-\|alpha-glucosidase	gnl\|CDD\|200471	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
AP018920.1\|BBG00173.1\|1413948_1414530_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	3.39666e-08
AP018920.1\|BBG00172.1\|1412743_1413871_-\|hypothetical-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.4397e-39
AP018920.1\|BBG00167.1\|1407457_1407982_-\|hypothetical-protein	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.06048e-18
AP018920.1\|BBG00177.1\|1415756_1416533_-\|esterase	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.50737e-38

>AP018920.1|BBG00173.1|1413948_1414530_+|TetR-family-transcriptional-regulator
MAARTRRRGDELIAALYESVLAEFDEVGLGRLTMEGVARRAGTAKTTLYRRWPTPEALLVEAIGAAYPVEEPSPAADDLRGDLIRALELLLEWARHPSARAVQAILADRRRAPELAAGLQEVFDASGRRFTATVLHHYARLGQLDPALLTPVVEDIGEALVFKHGLDTGEEPDRGRLAEIVDQAILPAVGLGR
>AP018920.1|BBG00172.1|1412743_1413871_-|hypothetical-protein
MPTAPTLRERALAPDLARGLMLALIALAHSQLLTGRVLAPLPGTASVVDTAAQAALTLLVDSRAYPMFAALFGYGLVQILRTREDRLGPDGARRVLRRRGWWLVAFGVAHTVLLFTGDILASYGLLALLLAGMLRATGRRLLILATIAATMGALTYGTVLALPDPTGGAELPTDPLASALLRLTVLPVLTPLNALMAAGPFLIGIWAARRRLLEDPAAHHLLLRRTAVTGIALGLLGALPQAARTTGFWAPDTVAAVAAGTLHTLTGYAGGLGYAAAIGLLAAHLAGRRRTAVTGALVACGRRSMSCYLAQSVAWLLLFEPYLFDLGGTVGPAGAAAIGLGVWGITVGVAALAARADRPGPAEALLRRLVEPAAR
>AP018920.1|BBG00171.1|1411730_1412735_+|LacI-family-transcriptional-regulator
MSDDRVGLREVSRPAGVRRIAELAGVSPATVSRALREGTPVSAGTRERVRRAALAVGYTLPVRSLTVAVLARFPTRWFFAEAVAGVEAVLSADGHVTQLHNVGDPVSRTHFFDTLPVRGRVDGLILVASALDDTERPALEDLGLPVTVVGGDMPGRFRVGVDDRAGARAAVRHLAGLGHEGVALVSFDPSDAGGRSTARDRRDGWADALGESAAAPGPVFEVGADVAAGETAAGRLLSLPRLPTAVFAMSDEAALGVVRTLRRAGVDVPGRVSVIGFDDHEMAAVADLTTIAQPVRRQGELAARALLATIAGESPADVELPTRLVVRGTTAPPR
>AP018920.1|BBG00170.1|1409969_1411640_-|alpha-glucosidase
MTAHDPARSGTPTADWWRHAVVYQVYIRSFADGNGDGTGDIAGLRSKLDHLARLGVDAIWINPWYPSPLADGGYDVADYRAINPMFGDTAQAEALIAEAHGHGIKVLLDIVPNHHSDDHVWFRQALAAGPGSPERERYHFRDGLGEGGELPPNNWKSMFGGPAWERVVSPDGTPEQWYLHLFDVRQPDVNWEHPEVRADFEATLRFWFDRGIDGFRVDVANAMVKQPGLPDLVAGVNDAQDGGHPYLDRDGVHEIFRSWRRIGDSYDPPRVFVAEAWVPDPERLARYLRPDELQTAFSFNFLTAAWLADDLRSNIDDAIAENSAVGAPATWVLSNHDVCRHPNRLSRKPEAGRGWNLDDVLDLPADPALGLRRSRAATLLMLALPGTAYLYQGEEFGLPEVEDIPVDRLDDPTWELSGHTLRGRDGCRVPLPWAAGEPWHGFGGPAWLPQPEVFARHAADVQEADPDSVLHLYRDALVLRRAHPALGGGELIWQDSPEGTLALSRVSDEGDGGFTALVNVSSAPVSLPEDAEVMLASGPLTVRGEVPADTTVWLRS
>AP018920.1|BBG00169.1|1408915_1409881_+|oxidoreductase
MSVRPVSDRSQTVPSLLTPALSDPDLSDPARTAAELPTAAELLAGVDLTGRRAVVTGAAAGVGLETARALAGAGAEVTLAVRDADAGAVARAAVVAETGNDRVAVGVLDLSDQRSIARFVRLWDGPLHMLVNTAGVSAIPLSRTAEEEWELHLAVNHLGPAALSSGLHWALAAVDGARVVNLSSGAHLDAPFDLEDPHFMSTRYDSALALGRSRTAAVLHAVEATRRWSGDGIAVNAVAPAANRSTPQQGAATVVLAAASPLAAGVSGRYFEDVAEAGPADPRTGRGVAAHALDPVVARRVWRWTERTLRETWFSGLPVVA
>AP018920.1|BBG00168.1|1408135_1408729_-|hypothetical-protein
MPTGTGRSGTRTALRADAARNRELLLAAAVRAFAAESSGGPATTLDGIAKEAGVGIGTLYRHFPNRDALVEAVYRNELDRLCAAATELLAELPADQALRAWMDRFVDYVITKKHLADSLHTLVACGRNPFAQSRERMVEAVRSLQQAGVADGTLRSDVDAADVLVGTSGICMAIADPQGRAQAGRLLDLLVDGLRTH
>AP018920.1|BBG00167.1|1407457_1407982_-|hypothetical-protein
MGDTLPSSTSSRGSRPATPPAAPPPDLVTAPGYGSRRMYQAYLAAWNRHVDGVLTGPQFAVLSAVRAYPDSDQSSLAGAVALDTSTMADVCRRLERRGLISRTESPYDARRKLLSLTDDGAAALAEVTRRTRRLDEELLTAVPEERRREIAVLLNTLGAHWEAVAERPLLDDRS
>AP018920.1|BBG00166.1|1406048_1407317_-|hydroxylase
MAPSQSLQITVVGGGLGGLTAALALRQQGCRVTVLEAAPQLGEVGAGIQTAPNASRVLIGLGLRGEMERIHTAPQDQVRRRWADGSIIAQLPLGRSVLESYGAPYWHYHRADLHRILLDACLHPEGPGPVVEVHTDAKVIELDRADPDRPVAVTGSGDRFAGDVLVGADGIRSAVRDLAGFDDTLTFSGEMAYRALIPGDLIAADPATRFLVDRYHSTIWYGPDKHLVHYVIRNGEYLNVVAIVPCTDQVERDWTAPASAQEMVEAFDDWDDRVPAMLSKAKDDVAAFALYRRRRDPVWIDGRVALLGDACHAMLPYQAQGASQAMEDAAVLAEEIGAAGPTGVDGALARYVHRRAKHAGMVQDASLQNMAFYHLPDGPEQRERDDKLRRFDGESDVSYDWLWRGSPLHDPDNEAITYQFAR
>AP018920.1|BBG00165.1|1404611_1406036_-|MFS-transporter
MRTGDQVVQDLPWRWRVQGKIFIIGGLGYMFDAWDVALNGFLTPLLGLEFGLSTGQRGLVATANLIGMAIGAVAFGTIADRMGRKKVFSITLLIFALFSVLGALSPNWEIFLLLRFIAGLGLGGCIPVDYAIVSEFSPRKLRGKILSAMDGWWPIGATMAGVSATLLVPVEGNWRWMLALMVLPALLLFWVRRGVPESPIYLARTGREAEAREVIDDMVARTGATPEPYVITAAAPEATTSGKKGLSAIGEQLKMVWAFSPRITGVAWSLFISVMVVYYAALSWMPSILRSQGMDEVAAFASTTIMNAVGILGVITSVLLVERVGRKWVIGVAAPLAAFSLVLFSLVMESAAASIATIAVFGFFALVVIPVMYAYVSELYPTELRASGFGWASSSSRAVTGFVPLIFGTLLWPVLGLPLTFTVMALLVVAAVIFMALCAPETKGMELDRITGTEQQVDHPAGGGTVSDEAVEKR
>AP018920.1|BBG00164.1|1403829_1404615_-|carbon-monoxide-dehydrogenase
MKPAAFTYHRASSVRDAVSLLDELADAEPKVLAGGQSLVAMMNFRMARPGHLVDITHVPGLAGIRRDGDALRIGALTTHRAVEKADLGPDFRVLSETMRWVGHLPIRTRGTVGGSIAHADATAEWCLLAVLLDAVVVAEGPGGRREIAAGEFFLGPFTTALDPDEVIVEIVFPRPAPRAALTEYADRRGDFAVVAAGADLDTGSVVLGGVGTVPVLVPDAGSPEEIADDLDLRDEPGAPASYRRGLVRTLVGRARSEATDG
>AP018920.1|BBG00175.1|1414968_1415241_+|hypothetical-protein
MPRLIETASRVTAAGTPPKTIDEYTLVLRGELRVEHSGGELTVPAGSAVHTAPGEWVRYSSPGPEGAEYVAVCLPAFEIGAARRDPDRQT
>AP018920.1|BBG00176.1|1415302_1415728_+|hypothetical-protein
MTSRILLGVALVAVLALLGCANTPASAAGPGDGGPRPATAADLIGGHWYPADGTAQGRAFAEFAADGSWTGSDGCNGQSGTWALEDDGAFTGAAGMSTMIGCENVPVAFWIDDAVLAEIDDGDLVLHDAAGDPVRLVRELA
>AP018920.1|BBG00177.1|1415756_1416533_-|esterase
MARLRCDVVADSLGLATSVTVLLPQPSRTRIGAGVRDLDAPPPVLYLLHGLSDDDTAWTRYTAIERYADELGLAVVMPQVHRSFYLDQAYGGRYRTWVCTELPELVARFFRVSGDPAQTFVAGLSMGGYGALGWALREPGRFAAAASLSGALDIRALAQGPPREEDPRIWERILGDEPVAGTDADLFALLERADPAAVPPLFVCAGTGDPLHEQSMRFTASARAAGLDVTGHDGPGGHDWAYWDARIRDVLDWLPLAR
>AP018920.1|BBG00178.1|1416532_1417588_-|alpha/beta-hydrolase
MDLLPGVRARDVPTDRIRIHLLEAGPADGAPLVLVHGNLSTGRFYEHVMPALAEDGFRVLAPDMRSFGRSEAAPLDATRGLDDWADDSAALLRALGITAPPHLVGWSTGGGAIARFAVAHPAASLTLLDPVGPYGYGGVRDDGTPVHPDGAGSGAGGANPEFVQRLRERDTSADSPFSIRNVLRRTYWSPSFRLSPEREDLLVDEILLTTIGDGGYPGSAVGSAHWPGFAPGDSGLLNALSPKYLRWDGIVGLDPKPPVLWTHGTDDLIVADGSMLETGTLGQAGLLPGWPGAEEFPPQQMVTQIRTVLERYAGAGGDVRTEWFDGSGHGPLFDAEPRWTRVLREFLAAVR
>AP018920.1|BBG00179.1|1417819_1419319_+|peptidase
MRRTIVIPVVGAVLAAAVLTGAAAPGEAQESPSIAWGPCASPPLQQAGAECGFLPVPLDHADPGGEQIEIAVSRVRHTVPDAQYQGVMLVNPGGPGGPGLGLSRLGGAVPSNAGAAYDWIGFDPRGVGTSRPALSCDPGYGGYDRPAHRPEHGAEAAWLPRTKAYAQACAERGGPLLEHLRTEDTVRDMDLIRAALGADRINFYGFSYGTMLGQVYATTFPERVRRMVLDGVVDPRAWWYQANQNQNVAFQRNIEVFFDWVAKNDATYGLGDSGDEVEALYYEIGDRLRAEPAGGLIGQAEWTDIFLAAGYNVGAYTRVADAFVAGTRDDAAALKQAYDQAGSPTDDNNYAVYLATQCTDAPFPPDWATWQADNTATDAVAPFETWGNAWYNAPCLDWPVPPGPAPQVRGTLAEGPLLISETYDGATPYEGALQARRTFPGSSLVEGLGGHTHSASLSGVSCVDDAVATYLATGALPERTAGDGSDVQCPAVPPPDPGS
>AP018920.1|BBG00180.1|1419424_1420051_+|hypothetical-protein
MPSGGSELLPGLDLVGDVLVPLGLLLTVVTTVATVHRLKGKPRLALLAPLSVVSVIGIAGIARVAKPSSPWARWRYSPDRMAQARIRFGAARTDAVPRRNPPATGGFVTVLIGVLAGVGFGAVTSLAGGVIIGHALLASAGRAASCRVCGWVVAIAAVGQLVAVVVVLPGLDALPGVVTTLVTGAGVLLLRRPAAVQDPPGSGDPLPR
>AP018920.1|BBG00181.1|1420113_1420356_-|hypothetical-protein
MRQPETGGVAERVPGPALRIVAPGKADHEVAAVDHPPVPGVEGVRPRPSGAQFDDTGRPGPEGTTRVPVTVIARDMPPPQ
>AP018920.1|BBG00182.1|1420402_1421332_-|hypothetical-protein
MHDDPPYDYRRGHLVVAGPADAPTVVVLGGRHGCAASLTDLLERLATEYRVIAVDPPGEAGLGSGGRPNTDRLRDYGSWFDDLLTELAPDAPGGITVLAHGFGAAVALAARPTPRVRGMILLNPHGLARPALRARLLTATLGWRAVPVRRTARRLLSRLGGPAFVPPEALVDWLATVGRHVALSSTPPPHPELARRWHGTPVTVGIGEHDPFFGDGRLAQPARWALGATVVVVPGAGALLPYEQPDAVHVMVSRRLGDGASTGRSPRSGPAGDRQPSGDGATAPGVVAAGATHTIDRPHHSPARSAVGV
>AP018920.1|BBG00183.1|1421217_1421994_-|hypothetical-protein
MDDVREVLRGGRPRKSDLLWLGTLLGRALLGPDGRRRGLLRDIGVTDGPGGPVVSAVRFDATAGPEVMPADRLRFRHRGPLLSTTGPLSPAAAPPDRWLHRTVLHADVLTGAPVDPPHRVADVGLLRRDDGRWMLWALDTRPVWQRGLGLRRRTYPWTAVVRRRVIPTPVPGAPAPRLPIPTTNGREARCGSIEATQVTLPSGSGASAASGAGRYRTTNGRCTTTLRTTTAAGTWSSPARPTLRPSSSSADGTAAPRA
>AP018920.1|BBG00184.1|1422298_1422658_+|hypothetical-protein
MSEAGRETVREIGAETDPERRAGRGGDVPGGLARRYRDRMLAAVAEVDDLDLWRIAENVSSVAEGNAPVRVTRYSGIHHGDTSERALIRLMAAVTDLATRELADRAGGPGGSRRPARRG

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Crispr_ID: AP018920_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_5

1485738-1485847

Orphan

Consensus_repeat	Method
CCGCTCAGGACGACGCCCGGTCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_5

>merge|AP018920|5|1485738-1485847|CRISPRCasFinder
CCGCTCAGGACGACGCCCGGTCGGTATCGGCCGACGGGGCGCCGCTCACCGGCAGCTGCTGACCGGCGGTTGGGCCGGGCCTGGGCCGCTCAGGACGACGCCCGGTCGGT

>AP018920|5|4|1485738-1485847|CRISPRCasFinder
CCGCTCAGGACGACGCCCGGTCGGT	ATCGGCCGACGGGGCGCCGCTCACCGGCAGCTGCTGACCGGCGGTTGGGCCGGGCCTGGG
CCGCTCAGGACGACGCCCGGTCGGT

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG00256.1\|1495409_1496009_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
AP018920.1\|BBG00249.1\|1487226_1488639_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
AP018920.1\|BBG00254.1\|1492309_1493548_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274884
AP018920.1\|BBG00243.1\|1482072_1482492_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132914
AP018920.1\|BBG00238.1\|1478549_1479005_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
AP018920.1\|BBG00248.1\|1486559_1487006_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273042
AP018920.1\|BBG00250.1\|1488883_1489933_+\|cysteine-synthase	unknown	unknown	gnl\|CDD\|223110
AP018920.1\|BBG00251.1\|1489938_1491144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223232
AP018920.1\|BBG00239.1\|1479260_1479482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378834
AP018920.1\|BBG00241.1\|1480786_1481563_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|168831
AP018920.1\|BBG00236.1\|1477168_1477795_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
AP018920.1\|BBG00245.1\|1485072_1485291_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00252.1\|1491175_1491568_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132914
AP018920.1\|BBG00244.1\|1482563_1484957_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237426
AP018920.1\|BBG00237.1\|1477859_1478510_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00242.1\|1481559_1481991_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|379279
AP018920.1\|BBG00255.1\|1494052_1495345_+\|CinA-like-protein	unknown	unknown	gnl\|CDD\|234789
AP018920.1\|BBG00253.1\|1491804_1492269_+\|thioesterase	unknown	unknown	gnl\|CDD\|238329
AP018920.1\|BBG00247.1\|1486003_1486327_-\|transcriptional-regulator-WhiB	unknown	unknown	gnl\|CDD\|376791
AP018920.1\|BBG00240.1\|1479498_1480695_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|170080

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG00249.1\|1487226_1488639_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	3.09377e-07
AP018920.1\|BBG00254.1\|1492309_1493548_-\|hypothetical-protein	gnl\|CDD\|274884	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase. Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin.	1.49826e-31
AP018920.1\|BBG00243.1\|1482072_1482492_-\|hypothetical-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	3.55697e-24
AP018920.1\|BBG00238.1\|1478549_1479005_-\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.24136e-73
AP018920.1\|BBG00248.1\|1486559_1487006_-\|hypothetical-protein	gnl\|CDD\|273042	TIGR00377, Anti-sigma_F_factor_antagonist, anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins. [Regulatory functions, Protein interactions].	4.48957e-22
AP018920.1\|BBG00250.1\|1488883_1489933_+\|cysteine-synthase	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	4.3694e-92
AP018920.1\|BBG00251.1\|1489938_1491144_-\|hypothetical-protein	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	1.57424e-20
AP018920.1\|BBG00239.1\|1479260_1479482_+\|hypothetical-protein	gnl\|CDD\|378834	pfam12277, DUF3618, Protein of unknown function (DUF3618). This domain family is found in bacteria, and is approximately 50 amino acids in length.	1.13628e-09
AP018920.1\|BBG00241.1\|1480786_1481563_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|168831	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed.	3.14014e-109
AP018920.1\|BBG00236.1\|1477168_1477795_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.95013e-27
AP018920.1\|BBG00240.1\|1479498_1480695_-\|ferredoxin-reductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.24067e-46
AP018920.1\|BBG00252.1\|1491175_1491568_-\|hypothetical-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.69647e-21
AP018920.1\|BBG00244.1\|1482563_1484957_+\|hypothetical-protein	gnl\|CDD\|237426	PRK13558, PRK13558, bacterio-opsin activator; Provisional.	5.02061e-37
AP018920.1\|BBG00242.1\|1481559_1481991_-\|anti-sigma-factor	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	1.16576e-07
AP018920.1\|BBG00255.1\|1494052_1495345_+\|CinA-like-protein	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	6.38746e-140
AP018920.1\|BBG00253.1\|1491804_1492269_+\|thioesterase	gnl\|CDD\|238329	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).	3.01523e-23
AP018920.1\|BBG00247.1\|1486003_1486327_-\|transcriptional-regulator-WhiB	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.50862e-25
AP018920.1\|BBG00256.1\|1495409_1496009_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	2.353e-97

>AP018920.1|BBG00245.1|1485072_1485291_-|hypothetical-protein
MSATATSLRGRATSCPTTITRLPDPSAAPWRTLDRGRGAAAHRAHPLPDEWMRMRRERIDDDGRRPRAVGVT
>AP018920.1|BBG00244.1|1482563_1484957_+|hypothetical-protein
MVVAAPEGGGLTIPAGPGGPRWAPGSRLVGVSSRYPDAGTDAAGPQPGPPPDDAVGRAVDQAVALSGGLLGDQLGEQPSRPQLPHVRGGTRVAVLMIDIERRRIVYANTTALELPGEPVALPADVREWAEIVRLTDPDGREYPDGASPLDRIAAGEQVPGEPVALHGPALVPDREGVPVDGGSGATAVTALVWITGFALADPAEGVTDTYHAGNSRALVVLLPLAGSGTRDRDRMEFLRDRAVLATEMSFTISDPHRDDDPLAWVNPSFERLTGYPLDEVIGRNCRFLQGPNTDRGAVARIARALRERRPVTEVLLNYRRDGTAFWNQISVSPVLDGDGRLVNFVGVQSDVTERVIVEQERRAALAEAEEARAQLRLLAEATTQMTSAFDVGDVCTRFARIAVPELADLCTVDLLDSPDGDSRRRLGVAARDASDEELLVRPGPLRTLRLEEPAAAAMRAGRPYLIGELPEDGRDAHPDDPVAAQEYERLRLRSAMVVPMLGRGRVLGLVTFHTQFPYGRRYTHRDLHLASDLAGRAGLALDNARLYEVERAAAATLQHSLLPALPEVPGMHVAARYVVGADGNQVGGDWYDVLPLPDGSVGAAVGDVVGHDLAAAAAMGQLRGVLRSYAWGGDRPGSVLDRCDQLVQGLDIAAMATAVYARLGPAAPDGSRELTYTNAGHPAPLLREPGRALVRLDAHHSPMLGAVPALGRATGPPRDEATLICAAGSLLVFYTDGLTDVAGEDADERAELLERTVAELPQDATPESVVEHVLETCRPERLDDDIALLAIRLDDHG
>AP018920.1|BBG00243.1|1482072_1482492_-|hypothetical-protein
MIPLPGSTPAQPSRDDGEPAGQHAALPGGLKLSFSSPRSDLTVLSVSGEIDTLTAPHLGAALDDLLERADRQIAIDLEGVTFLASSGLGALIHTARQAARDDRRLFVVATSRAVLRPLEVTGSAQLFTVVGDRAGIPGP
>AP018920.1|BBG00242.1|1481559_1481991_-|anti-sigma-factor
MAQEDSPSVPADQGSAPTVEIRTAARPALIPTVRAVASDLAARADFDLDAISDLRMAVDEACATLVGLAAPGSSLRCTFDVHGERIDVAAQVSTGETTDLPTDSFGWRVLQTLADQVAVETGEGDGGRPALTIRLHKLAGPGL
>AP018920.1|BBG00241.1|1480786_1481563_-|RNA-polymerase-sigma-factor
MTADPEYAHLTPLLEQYAGLDADDPRREALRDQLVTGYLPVAQHIARRFNHRGEPLDDLVQVATVGLINAIDRFDPAKGGEFFSFAVPTISGEVRRHFRDQSWSMRVPRRLKDMHVSINGAVSELSQRLGRAPKPSELAQHLDLPVNEVLQGLEAAEAYRSSSLDEMLSSEDGSATVGELVGDADAELDRVDYRESLRPLLAELAPRERTIVMLRFFGNRTQTQIADEVGISQMHVSRLLSQTLTRLRNRLDPDDRTL
>AP018920.1|BBG00240.1|1479498_1480695_-|ferredoxin-reductase
MTGPEHVLVVGAGLAGLRTVEGLRRAGHDGRISLVGAEKHLPYDRPPLSKQYLAGEWDRARIDLIAAEGLTELGVRMHLGRRAVALRAGEVELDDGSTLHADAIVLAVGVVARTLDGQPPSAHVLRSVDESDTLRDALAQASSLLVVGAGFIGAEVASTALNRGLAVTVLETGPVPMARVLGSEVGALAARLVSEAGADLRCGVTVSALTETGATLSDGSAVTADQTVVGIGGRLDLGWLEPTGLDLTGGIPCDEHGRVEGLTGVWAVGDAAAWTDPHFGGRVRHEHWTSATDQAAVVARDITGAEPPPPTVPYFWSDQFGLKIQLIGRPDLADELLPLHGDGLDGGEIKGTTVGYLRGGELVAVVGFGAARRIARYRKPLAARADRAATLEFRDTLT
>AP018920.1|BBG00239.1|1479260_1479482_+|hypothetical-protein
MARDPENIQREIEKTRDALADSLDALADRANPKNLIEGGREQIAEKLADPKIKYTLIAVGALVGLVVIRSIFR
>AP018920.1|BBG00238.1|1478549_1479005_-|peroxiredoxin
MQAGDPAPDFTLDDADGKPVSLSDHRGRKVIVYFYPAASTPGCTKQACDFRDNLAELDGAGIDVLGISPDKPAKLATFRDAEGLTFPLLSDPDRSVLTAWGAFGEKTMYGKTVTGVIRSTFLIGEDGTIEDAKYNVRATGHVAKLRKDWKI
>AP018920.1|BBG00237.1|1477859_1478510_-|hypothetical-protein
MPRARRWTDEQLRAAVAASHRLSEVCRRLGIRPGRYDWLRAHIVRVGADAGHIPDAAAGRRRHHWTDEQLTDLVRRSDTVAAVLRGLGYQPSGGTHRLVVGHIRRLGLDITHFRGRSWARGRSVRTRTARPLEEILVRNSPHRSTGHLRRRLISAGLKPAHCEQCGAAEWRGRPLPLHLDHVNGDHTDNRLENLRILCPNCHALTDTWCARKSKPA
>AP018920.1|BBG00236.1|1477168_1477795_+|TVP38/TMEM64-family-protein
MLVVSIVVMVARAYGLSVVPQFGEVRRVVEAAGPWGPVVFVLLQVLLNVPPFPRTVFTVSAGVLFGAVVGTALAIIATALAAVVAFALVRLTGGGIIGRWAEHPRALWVRRRLDHHGTLAVTSMRLIPMVPFAVMNYLSGLSAVRFWPYLIGTVVGSTPSTIAIVTLGDAVTGHVKPSLLLVSALCGVVGLIGVVVAARRPIPEEPAS
>AP018920.1|BBG00247.1|1486003_1486327_-|transcriptional-regulator-WhiB
MSDISRLPGPMDDEWQWQRLGACRGMDSAVFFHPDGERNPSRSRRTEQAKQVCRSCPVIQECRRFALASREPFGVWGGLGESERRAVLERRDNVRTADAPGLVAAAG
>AP018920.1|BBG00248.1|1486559_1487006_-|hypothetical-protein
MTDSRRPGPGNADGSLGGTTRTDTTPPDTGPDDADNSDGLQIGTTSPSEGVVVVTVGGELDMLTAPELRAAVSERIASVELVVLALDDVRFLGTSGLAALIELREQAHRTGVELRIACTERRVLRPIGIAGLHHLFDIHDDVPAALNS
>AP018920.1|BBG00249.1|1487226_1488639_-|hypothetical-protein
MSKVRGERRPGGTADRWSELLGRRHSGTASGRTDGDVNGDGTPGVPPEADRGVAGDGGTDSDDVRDDERTRSTESAARAGATTPAGSPDGDGAEPAGQGSAAPVEELLVRLAAAERALTEAETARAEAVRRAEALAAELERARATPPETFGMRADKVLRMAQHEAAQRLRDAEAEAAALRENAGAEAARITDDAYTEAIRITSDARAEVDAAMAAGATARRDSELVADTAASMHAHVNGLRSSVRAELARVHALLGAEIGRLDAPPLPGTGAVRGPDPQAARPGSSDTGPVPAVTGSGSMVAGSVPTVAGSVPTVAGSVPTVAGSVPPRPRPAPAHALRDPAAATPGSGPAAGADTGELPVFSAPVVSQPPVSQPAITQPAVPQPPVTVPVVSLPAQRGSGSGPAPADAPEARAGAPAGGSDPAGGFGSDAAGGTAVDPDQEGDRVSAGAVAADEPGAAGADVRGPDPEA
>AP018920.1|BBG00250.1|1488883_1489933_+|cysteine-synthase
MRRVQADANRSADTHLHVLELPAEWGVQAYLKDESVHPTGSLKHRLARSLFLYGLASGWIGEGTTVVEASSGSTAVSEAYFARLLGLPFVAVMPRSTSPEKVALIEREGGRCHFVEHGTQVYDEAERLAAESGGHYLDQFTYAERATDWRGNNNIAESMLSQLADEPYPVPEWIVVGAGTGGTSATIGRYLRYRRLPTRLAVVDPENSAFLNGWALGVPDYATGMPSRIEGIGRPRMEPSFVPSVIDRMFPVPDAASIAAARHLRTLTGRWVGGSTGTNLWGLYQLVAEMVRAGRRGSVVTLICDGGERYRHSYFDDDWVAAQGMDLAPYTATLETFLATGHWEPPPAG
>AP018920.1|BBG00251.1|1489938_1491144_-|hypothetical-protein
MSSPRTQIPGTDPAPPGPLRVVADDVRAGRRSAAGIADALLDALDRADSGSPLITVDADPVRAAATAVDRRADRFALPLAGVAVVVEEGISVAGRGDEPVRRLRAAGALIAGRARTAAFAIGPDGSPGGRATAATVATGTVPLGIGIDGDGALRAAAAAHGLAALKPGRRVLPLPPGEERRWSGLAETTLVAAGPADLVPVLNALTTDARHTSGAEPGQPVGSLVCSLRTGRTRLAGPAAATAVHEAIRVLDAAGIGLVADDPPYRAVLPVHGARRRQAGLARRVEDLQLDPAQLPRAARSALRRGRRVRRLGGLRPATPASWRQRLVGWLDAAGAEAALLPVTAGPAGAGSTGLAAWNLAGLPSLVTPVHPGPGRTCVQLVGRPGSEHRLLATAALLVGD
>AP018920.1|BBG00252.1|1491175_1491568_-|hypothetical-protein
MSSETPTGVGDEQGPDVGEVVRFEVVEHTGGAVVVHVHGEIDTMTAPVLTERLADQIPSASLLVVDLSRVTFLGSAGLAALVEAKEKTAGADRRLRLVCGSHAVTRALEATSLLSLFDVADGVPEALRTA
>AP018920.1|BBG00253.1|1491804_1492269_+|thioesterase
MSAEQPARFVVRIGVRSYEMDVNGHVNHAVYHQYAEHARMEHFRASGLSEDVLAGRELTVVLLSTTVHFRAELRAGETLEVDSEIAFTRRKPFTMSHRIRRIADRAGTPVDDLAAEVECTMGVLDVGTRRLVADPHARLSAAATEPALLGPVPD
>AP018920.1|BBG00254.1|1492309_1493548_-|hypothetical-protein
MGELDRLLPLRDLRVGPGFHAARLLVTVGGSPQGQVTVPLRGGRATVADLEAALITLGSPELVAPAPVATDPVTVVIATRNRPASLSRCLAAVLASDHPALSVIVVDNDPDDELTRDAVQATGSPRVRYVREPRRGASVGRNRGLAEARTELVAFTDDDTEVDPAWASRLAGAFAADPELACVSGPVLAARLGSAEERAADVALAWNKGFTARRFSLDDPPADSPIFPFAPGLFGIGANLAVRAAAARSVGGFDEAMGPGTPTHGGEDCEFLVRMILAGNILGYAPGAYLWHHHRPDQDALRAQLEGYAVGLGSFLAKVALSPEGRAVALRRLPAALARLRHISAREAGAGDAIPNDADQTRTRGLLTGPRAYLRSRRAVRRAGGAVPPLIGRSLPVVVPGHTAERTPVIPA
>AP018920.1|BBG00255.1|1494052_1495345_+|CinA-like-protein
MAESRPTASVLVTGSELLTGLVADANGPFVSRALGDLGFEVRRVLLVGDRPEDLRSGLEFVAGDDLVVTTGGLGPTADDLTAEIVAEFCDAPMEVDTALQGRIHAKVAGWVARTGWDGPALDDSIAKQARVPRGASVLEPVGTAPGLAVARAGGPLVVVLPGPPRELTGMWPAALASPPVAALLARTPRAEPILLRFAGLPESEIAATLRDIERELDTSRVEVTTCLRRSELEVDLHPLPGAEDTARELSGRIVDAHRRRLISDDGRSTDELLAGALLASGRTVATGESCTGGLLAGRLIDRAGSSAYVAGGVVAYSNEAKSALLGVDPALIAEHGAVSPEVARALADGARERFGADIGVGVTGVAGPGGGTEAKPVGYVCFCVTTADGQVLARDPQLPGGRADVRERSVDLAMHLLLRVTGVTGAGAHR
>AP018920.1|BBG00256.1|1495409_1496009_-|superoxide-dismutase
MAEYTLPDLPYDYSALAPHIAPEIMELHHSKHHNTYVQGLNATLEKLADAREKNDFGAIVGLEKTLAFNLGGHVNHSAFWKNLSPDGGDKPTGDLASAIDEDFGSFDAFQAHFTAAATTIQGSGWAILGYDQLGGRLLIHQLYDQQSQLPAGQTPIVLLDMWEHAFYLQYKNVKPDYVKAWWNVVNWADAAERLAAAKG

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Crispr_ID: AP018920_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_6

1592490-1592928

Orphan

Consensus_repeat	Method
TGCGTAACTGGCACTGGTGA	PILER-CR

6 spacers

The CRISPR arrays of AP018920_6

>merge|AP018920|6|1592490-1592928|PILER-CR
TGCGTAACCGGCACTGGTGAGTGCAGACGCCACCTGCACCGGCGATCACATATGACAGGGAGGTTGACGTGCGTAACTGGCACTGGTGAGTACCGGCAGTCCTGCACATCCGCGACCACACGCTACGAGGAGGCCGACGTGCGCAACTGGCACTGGTGACACCGCAGATGGAAGCCGATCCCGCTACACGAGCCCGAGAGGACGACACAATGCGCAACTGGCACTGGTGAATCCCTGCCGAAACTCATTCCCGGAAGCGCACACCGTAGGGAGGTCGACGTGCGTAACTGGCGCTGGTGACATCGGCAACCGGAACCGTTCCCGCTACACGAGCCCGGAGGACAGCGTAATGCGTAACTGGCACTGGTGAATTCCGATGGCCCTCACATCTGCGACTACACGCTACGAGGAGGTCGACGTGCGCAACTGGCACTGGTGA

>AP018920|6|1|1592490-1592928|PILER-CR
TGCGTAACCGGCACTGGTGA	GTGCAGACGCCACCTGCACCGGCGATCACATATGACAGGGAGGTTGACG
TGCGTAACTGGCACTGGTGA	GTACCGGCAGTCCTGCACATCCGCGACCACACGCTACGAGGAGGCCGACG
TGCGCAACTGGCACTGGTGA	CACCGCAGATGGAAGCCGATCCCGCTACACGAGCCCGAGAGGACGACACAA
TGCGCAACTGGCACTGGTGA	ATCCCTGCCGAAACTCATTCCCGGAAGCGCACACCGTAGGGAGGTCGACG
TGCGTAACTGGCGCTGGTGA	CATCGGCAACCGGAACCGTTCCCGCTACACGAGCCCGGAGGACAGCGTAA
TGCGTAACTGGCACTGGTGA	ATTCCGATGGCCCTCACATCTGCGACTACACGCTACGAGGAGGTCGACG
TGCGCAACTGGCACTGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG00336.1\|1590636_1591713_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
AP018920.1\|BBG00327.1\|1580733_1581867_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143635
AP018920.1\|BBG00344.1\|1599568_1599844_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00333.1\|1588327_1588843_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143635
AP018920.1\|BBG00343.1\|1598886_1599459_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132914
AP018920.1\|BBG00339.1\|1595875_1596217_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00345.1\|1600593_1601022_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375904
AP018920.1\|BBG00342.1\|1598336_1598759_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00328.1\|1582109_1583294_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181026
AP018920.1\|BBG00341.1\|1596796_1597897_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239583
AP018920.1\|BBG00335.1\|1589794_1590493_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG00332.1\|1587693_1588281_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380063
AP018920.1\|BBG00330.1\|1584164_1585580_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340917
AP018920.1\|BBG00338.1\|1594289_1595957_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
AP018920.1\|BBG00334.1\|1588877_1589672_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|372577
AP018920.1\|BBG00329.1\|1583800_1584136_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238182
AP018920.1\|BBG00331.1\|1586071_1587616_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
AP018920.1\|BBG00346.1\|1601026_1601713_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377269
AP018920.1\|BBG00340.1\|1596307_1596751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377145
AP018920.1\|BBG00337.1\|1593596_1593902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378696

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG00336.1\|1590636_1591713_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	3.26591e-76
AP018920.1\|BBG00327.1\|1580733_1581867_-\|hypothetical-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.68813e-13
AP018920.1\|BBG00345.1\|1600593_1601022_-\|hypothetical-protein	gnl\|CDD\|375904	pfam18478, PIN_10, PIN like domain. This is a bacterial domain of unknown function suggested to resemble PIN like domains.	2.94026e-13
AP018920.1\|BBG00333.1\|1588327_1588843_-\|hypothetical-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.09275e-49
AP018920.1\|BBG00343.1\|1598886_1599459_+\|hypothetical-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.27227e-09
AP018920.1\|BBG00328.1\|1582109_1583294_-\|hypothetical-protein	gnl\|CDD\|181026	PRK07550, PRK07550, aminotransferase.	1.58495e-158
AP018920.1\|BBG00341.1\|1596796_1597897_-\|fatty-acid-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	1.53287e-58
AP018920.1\|BBG00332.1\|1587693_1588281_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380063	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in CgmR (C. glutamicum multidrug-responsive transcriptional repressor), previously called CGL2612 protein. CgmR (CGL2612) from Corynebacterium glutamicum is a multidrug-resistance-related transcription factor belonging to the TetR family. It regulates expression of the immediately upstream gene cgmA (cgl2611) by binding to the operator cgmO in the cgmA promoter. The cgmA gene encodes a permease belonging to the major facilitator superfamily, a protein family composed of bacterial multidrug exporters, and the pair of CgmR and CgmA confers multidrug resistance on C. glutamicum.	5.96683e-10
AP018920.1\|BBG00330.1\|1584164_1585580_-\|MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.25073e-146
AP018920.1\|BBG00338.1\|1594289_1595957_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	4.49953e-82
AP018920.1\|BBG00334.1\|1588877_1589672_-\|IS5-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.68558e-23
AP018920.1\|BBG00329.1\|1583800_1584136_-\|hypothetical-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	3.3381e-08
AP018920.1\|BBG00331.1\|1586071_1587616_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	1.91109e-94
AP018920.1\|BBG00346.1\|1601026_1601713_-\|hypothetical-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	0.00871565
AP018920.1\|BBG00340.1\|1596307_1596751_+\|hypothetical-protein	gnl\|CDD\|377145	pfam03861, ANTAR, ANTAR domain. ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	2.81261e-09
AP018920.1\|BBG00337.1\|1593596_1593902_+\|hypothetical-protein	gnl\|CDD\|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	9.70552e-14

>AP018920.1|BBG00336.1|1590636_1591713_-|ISL3-family-transposase
MRRYRCADCGHVWRQDTSAAAEPRAKLSRTGLRWALEGIVVAHLTVARVAEGLGVAWDTANNAVLAEGNRLLINDPTRFEGVKVIGVDEHVWRHTRRGDKYVTVIIDLTPVRDGAGPARLLDMVEGRSKAAFKTWLADRDDAFRDAVEVVAMDGFTGFKTAAAEEIPDAVTVMDPFHVVRLAGDALDRCRRRVQLAIHGHRGFRDDPLYKSRRTLHTGADLLTDKQSDRLRALFVDDAHVEVEATWGVYQRMIAAYRHEDRQRGRELMEKLITDLSAGVPKVLTELTTLGRTLKKRAADVLAYFERPGTSNGPTEALNGRLEHLRGSALGFRNLTNYIARSLLETGGFRPQLLHPRLG
>AP018920.1|BBG00335.1|1589794_1590493_-|hypothetical-protein
MALVVVAASIAGLVLTPATGGELIVAAALTVSFIVHVELSLHAERVRRTVAETRYCDLSSVWTFAAALALPLPLAIGLLIISYSHLYWRVCRPSGVPSYREGYSGATVVLAMGAVSAVRWATGLDGNYASTFGAAVIVACVVVYAATNTILVVLAIRLSQPGSRFMAILRGGDLELELATLSLGAIVAAAILPSAGFVIPLVFVVLLVLERTTLVRELKERVQTDTKTGLLN
>AP018920.1|BBG00334.1|1588877_1589672_-|IS5-family-transposase
MLVYPSSMPVSNRALHTLSDALRRHRKNLGSRWRRLPPGQQALLVLAYLNKGETYTALACGFGIGTTTVFRYVREGVDVLAAAAPSLDEALGVARRKAFVILDGTLLAIDRVGMGSGYDRAFYSGKHKRHGVNVQVLADPAGRLVWASPALPGARHDMGAAREHGLIDALSEHAIQVVADTAYQGGGPAIRVPQRRRRLDPDTGRYRPLSQAQKQVNVAHARQRGPGERANAQLKSWQVLRKIRSCPKRATALVQAVMVLIQAR
>AP018920.1|BBG00333.1|1588327_1588843_-|hypothetical-protein
MSRVERELDLARRDVTSSAVLVLDLDHFKRVNDEHGHLAGDEVLRAVGAAVTAEIRDRDVAGRFGGEEFLVFLGGLRGRPPSCVAAARDAAERIRRRVRALEVQVSGDSGSQPLRGLSVSIGVSWCSPGAAALPDLLARADEALYVAKRAGRNRVEVHEGEAEHRSPTSPG
>AP018920.1|BBG00332.1|1587693_1588281_+|TetR-family-transcriptional-regulator
MGRTTGRSPEDTRRLVLQAAGAAIRRHGVGATLDLIAREAGVSKGGLVYHFASKEALLVALAQGELDAFDDAVRAHLEGADGTPGRLVRAYVRASLAPVDEGEALARFTLIAQLLAVPAVLDLARADDRRWQAALSADGVPEAARTLVLAAADGIGGRPLWAADLLPPVRERLEADLLEMVDAALGSDTATAARD
>AP018920.1|BBG00331.1|1586071_1587616_-|MFS-transporter
MTSVAADALSPPRRWAALAVLSLAVLVLAVDNTVLYLAVPSLTADLAPTANEILWIGDVYSLALAGLLIVAGSLADRVGRKRLLLLGAAAFGAASLFAALSTSPTMLIAARLLLGVAAATLMPSTLSLIRTIFTDPAERTRAIAVWAAAASGGAAVGPLVGGALLEHFSWGAVFLINVPIMVLLIVFGAWLLPESRDPAPGPFDPVSALLSMTAIVPVVWAIKHTVSAGVDVLGLAALLAGAVMGVVFVRRQRRLTVPLIDVSLFARPAFSGAVFAGFMAVFALIGTLFFFSQYLQLVRGFSPLQAGLGELPTTLSAVAVVAVVGWLSRRLGLGRAIATSLLLVSAGLAAVAVAEGFSSYLWLALALIPLGLGVGLAQTLTTDAVVSSVPPRRAGAASAISETALELGVAMGVAVLGSVVSLVYRGWLDLPADLSAEHRAAVTDSLAAGTHPLDPGSPVLDGARAAFTVAMQTTSLIAAAVTLAAAVVAWRTIPSSSAAPVGDVGRTGAATRSD
>AP018920.1|BBG00330.1|1584164_1585580_-|MFS-transporter
MSLHAGAGATELPPDTRGPHSRRLGLITVIATFGGLLFGYDTGVINGALEPLTRDLSLTSFTEGFVVSILIFGAAAGAFIGGALSDRYGRRHNILLLAIVFMIGTIGCVLAPNWEILSVFRFVLGLAVGGASATVPVYLAEISPAERRGALVTRNEVMIISGQFAAFVVNAIIYNLWGHVDAIWRVMLLIAVLPAIALFIGMLRMPESPRWLVAQGRTDDALAVLGQVRSPERAEAEMADVHRLAAEEQKSRTGGATDLSVRWIRKLILIGALLGIFQQFSGINSVMYYGTQLLGQAGFSADSAIIANTLNGLFSLLGITVGILIINRINRRTMLLAGFALTTTMHLLVGLSAYLLPDGQMKAYFILVFVVLFVFCMQGTLGPLTWLILSEIFPLKIRSMAIGISVLALWLANALVALAFPPVVESMGIASTFFIFVVLGLAALVFVYTMVPETRGRSLEELEGDFRQRYS
>AP018920.1|BBG00329.1|1583800_1584136_-|hypothetical-protein
MSVLVAVPAGPEGAAALQAGKAEAALLGTELVVLNLSLDPIGDDVAVIERDGPDDRDPVDAVLDEIDRRGDVQRLVIGLRRRSPVSKAVLGSVSQRLLLQAPVPVLAVKAG
>AP018920.1|BBG00328.1|1582109_1583294_-|hypothetical-protein
MTTEGTAARVRLDPTTTGGIDSPIGAAQALLALHDGRRPLLDLSQAAPPYPPAPEVVERVVEVARDPAGAGYAPVPGLPPLRRAVADELSQAYAGGIDPSDVVITAGCNQAFTTVVSALAGPGDELVMPLPYYFNHDMWVRLQGVHPVYLEPDAELIPRAADAEALITPRTRAIVLVTPGNPSGVTIPPTEIVAFAELARRHDIALVLDETYRSFRDTDAPAHPLFADPQWRSTVVSLHSFSKDLAIPGYRVGAVVGAPELNREVLKVLDCIAICAPRAGQEATLTGLTRAGAWRAERVAEIARRREWLIKALAPRPGGFEVVSSGGFFAWVRHPFTDRPSADVVRELLLEHDTLVIPGTAFLPEDRRMLRVSVGRVDADAAGTLAGRLAAIGR
>AP018920.1|BBG00327.1|1580733_1581867_-|hypothetical-protein
MHDAEPGSGTAPDVAEQRSRTVTKPLLIALSRAVEDFALAAARDRPIVVVGLFQRAGYLTPQLPTWTRIAQACGDGAAVAIAGTAPVELPAELGYVRLTDAEAAAREWSVTVLTPRSGATVVAHDMESVDGSARSLERGRLFSARWSFRHADAHAELLRLRHQLGPRLGARRTGALDEVLSRVLPIPGTSTDHRHDAAADRLARHLSEERRRADLAETRLDELEPGAERDPRSGLPTRAFLDRWTAGSAAGTLPLGLALLRVQGLGTVNRRHGFRAETAVLRGVARLLSAHSGASGRAVRIGREEFLLVLPGLDVRSLAVVARRLCETVAGLSSAFPFVPTPCHAVITHTRNRPLPLDALWAVLDGTTGTGVTLLQS
>AP018920.1|BBG00337.1|1593596_1593902_+|hypothetical-protein
MPPGCTAEPGRPGGALSVTGTGVDAAPDGAASDRYAARILLAVHTAVGIGRIRRLNLCANDDCRWAFWDASRPGTGRWCSMQVCGGQHKAREYRRRNRTTS
>AP018920.1|BBG00338.1|1594289_1595957_-|FAD-dependent-oxidoreductase
MDGAETGTSSDVVAHPGQGAEYADVVVIGAGHNGLVAANLLADAGWDVLVLEAAPEPGGAVRSAEITEAGFVNDLASAFYPLGAASPVLRELDLGAHGLRWRHAPAVLAHVTPDDRSVVLHRDVERTAARLDAFAPGDGRTWSAMAREWSRIGPDLLETVLRPFPPVRAGARLTRTLGVADGMRLARTLMQPVRAFAEERFGGDGARLLLFGNALHTDLGPDIAGSAAFGWLLSMLGQDVGFPVPEGGAGMITAALMDRLVHRGGRVSCGRGVREVLVRGGRAVGVRDEQGGPITARRAVLAAVAAPVLYRDLVGEEHLPPRFVTDLDRFSWDFSTVKLDWALSGPIPWTAGEVAGAGTVHLGADLDGMRRYTADLGAGRVPEDRFLLLGQMTTADPTRSPPGTESAWAYTHIPRGLGWTRDEVLGYARRIEDTVERNAPGFRDLIRARAVSGPADLQARDPSLVDGAIGGGTQAVHQQLFFRPVPGLGRADTPVDRLFLAGASAHPGGAVHGGPGANAARAALAADGITGGLYRGLVRRLHRRIYADGPDDGRR
>AP018920.1|BBG00339.1|1595875_1596217_-|hypothetical-protein
MLRTRARPTGEARVLLDPSPSTAGTTVTLTENAVAGALVPGPLQDIGLHPRNVESIARAVRGGLEPVPRSRPDGVTPSVGESRRRPVWTVPKRVPPPTWSLIPGRVPSTPTSS
>AP018920.1|BBG00340.1|1596307_1596751_+|hypothetical-protein
MSAGATAEALVSDQPGQHVDHLCLDGDVESALAGTLRPEPKPEPDLALGQALADVATIAILSEREIHRSEVVIGQLQHALQSRVIIELAEGIVANRLDVDMATAFEMLRTHSRRNNERLSTVAGQIVEGRRDLSILAPESGHGRAGA
>AP018920.1|BBG00341.1|1596796_1597897_-|fatty-acid-desaturase
MDTGRSPGTGAEPPIPEDRPAQQRHVNGYVALVHAVDEHGLLRRRHGYYGIRAAATIAAFVAVMASVVLIGDSWWQLVPAAVLGVVSTQFGFLGHDLAHRQVFNSARANVWSARVVAGLFTGLSYTWWMGKHNAHHRSPNQEERDPDIGPGVLAFTPAAAAPRTGLAAWLTRRQGWAFFPLLTLEGVALHVVSVQTLLRDRTRTHRWLELTFIAIRLGGYAALLLSLLPVGKAAAAAGLHLAVFGVLLGGSFAPNHKGMPIVPATMEVDFLHRQVVMSRNISGGRLVEFMMGGLNRQIEHHLFPSMPRPNLARAAPLVRAYCAEHGIPYTETSLIRSYGIVVRYLNAVGLAERDPFQCPLVRRYRA
>AP018920.1|BBG00342.1|1598336_1598759_-|hypothetical-protein
MFTGRSHNGVSGDSASDGRAQETARSETGHRARSRPRPRPETFVDTPGRRVASMTTFAHAPGDRVHCLLEEVSDAVHPCCACALRRPAGGGSRLSCRLNSLAGPGPPITVLSMTGELDANTQDAAANTPARHWSTPPGPW
>AP018920.1|BBG00343.1|1598886_1599459_+|hypothetical-protein
MVDPRHQEIPVPPRGELTAADFGMGRPGSGRPGADTGFAIVGGDTDGFECMLDTVPIDRRTPGTIVVLRMTGKIDSGTQREMQSSLCAGLRARPRHLLIDLSGVTFCGVRAFGLLEQGVRIAAEGRIGYALCGCSPHPERVAMTLWGSAGPGRHRSVAAAVATIRAARALQDRSTSSAMEGSSGGRPPTM
>AP018920.1|BBG00344.1|1599568_1599844_+|hypothetical-protein
MPRYHVTVGILECSISEADLGGIQQDPPGWLITERSRWRSGVRLDLEGRANDPSAAERGARAEVAVWLGRQGIDGDVAVSRTRRELADHDH
>AP018920.1|BBG00345.1|1600593_1601022_-|hypothetical-protein
MPAAPQSSRWFVDENSLGVAKALAYVRGDITWPGAPDGPVPAGAADTAWLPIVGRAGLVVLTRDKRIRSRPLERQTLLDHGVRACFLTSGGSLDLFSQLRLWLRYWDDIESLVIEQPAPWLASVTRTGVRVFDTCGTDRQPS
>AP018920.1|BBG00346.1|1601026_1601713_-|hypothetical-protein
MTPSVLPLERRVYGMSQAARLLGLRTDALRRWIDGYQRSGTTYAPVIREESTGDDIVTWGEFVEAGYLREYRAKQVTLQYLRPAIAILREELGVRYPLATLKPYTSGRSLALKVQKQVGLDPSLNIVVLGRDGTLQLTDAAEAFLEKVDFDDDGTRDARRLFPLGRGVPVVLDPDHGFGEPTLTSGARTETVAELVAAGESRERVAEVYDIGVNDVDAAVRYEHDRVA

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Crispr_ID: AP018920_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_8

2614073-2614167

Orphan

Consensus_repeat	Method
CGCCCGCCGGGCCCGCCGCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_8

>merge|AP018920|8|2614073-2614167|CRISPRCasFinder
CGACCGCCTGGTCCGCCCGCCGGGCCCGCCGCGCGGCTGAGCCCGCCCGCGACCCCGCTGCGTGGCTGAGTTCGCCCGCCGGGCCGGCCGCGCGG

>AP018920|8|6|2614073-2614167|CRISPRCasFinder
CGACCGCCTGGTCCGCCCGCCGG	GCCCGCCGCGCGGCTGAGCCCGCCCGCGACCCCGCTGCGTGGCTGAGTT
CGCCCGCCGGGCCGGCCGCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG01271.1\|2604668_2606138_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
AP018920.1\|BBG01282.1\|2614905_2616255_-\|putative-cytochrome-P450-140	unknown	unknown	gnl\|CDD\|225035
AP018920.1\|BBG01275.1\|2609330_2609972_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
AP018920.1\|BBG01270.1\|2603380_2604538_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
AP018920.1\|BBG01274.1\|2608734_2609322_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01290.1\|2624373_2624940_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01288.1\|2622642_2623971_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|215457
AP018920.1\|BBG01272.1\|2606170_2606818_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
AP018920.1\|BBG01287.1\|2621671_2622526_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01273.1\|2606825_2608631_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271321
AP018920.1\|BBG01283.1\|2616388_2617261_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
AP018920.1\|BBG01279.1\|2612802_2613672_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01286.1\|2620007_2621675_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224055
AP018920.1\|BBG01276.1\|2609968_2611645_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
AP018920.1\|BBG01284.1\|2617323_2618367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238566
AP018920.1\|BBG01277.1\|2611622_2611862_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01289.1\|2624049_2624301_-\|50S-ribosomal-protein-L31-type-B	unknown	unknown	gnl\|CDD\|234969
AP018920.1\|BBG01285.1\|2618352_2620011_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224055
AP018920.1\|BBG01278.1\|2612188_2612656_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225168
AP018920.1\|BBG01281.1\|2614400_2614880_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG01271.1\|2604668_2606138_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.27781e-37
AP018920.1\|BBG01282.1\|2614905_2616255_-\|putative-cytochrome-P450-140	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.43392e-92
AP018920.1\|BBG01275.1\|2609330_2609972_-\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.14093e-26
AP018920.1\|BBG01270.1\|2603380_2604538_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	4.06685e-122
AP018920.1\|BBG01288.1\|2622642_2623971_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|215457	PLN02852, PLN02852, ferredoxin-NADP+ reductase.	8.45423e-135
AP018920.1\|BBG01284.1\|2617323_2618367_+\|hypothetical-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.32732e-35
AP018920.1\|BBG01273.1\|2606825_2608631_-\|hypothetical-protein	gnl\|CDD\|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	3.39757e-138
AP018920.1\|BBG01283.1\|2616388_2617261_+\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	2.75682e-17
AP018920.1\|BBG01286.1\|2620007_2621675_-\|ABC-transporter-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.43592e-78
AP018920.1\|BBG01276.1\|2609968_2611645_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
AP018920.1\|BBG01272.1\|2606170_2606818_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.46075e-42
AP018920.1\|BBG01289.1\|2624049_2624301_-\|50S-ribosomal-protein-L31-type-B	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	5.15789e-49
AP018920.1\|BBG01285.1\|2618352_2620011_-\|hypothetical-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.59768e-101
AP018920.1\|BBG01278.1\|2612188_2612656_+\|hypothetical-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.52866e-16

>AP018920.1|BBG01279.1|2612802_2613672_+|hypothetical-protein
MSSPPAPPERGLRHVTAIRYVLPLREGGSLPGLMEADDLGSYAVKFTGAGQGRSVLVNEIVAGELARALGLPVPEIATITVDGGLGRTEPDQEVQELLRKSAGLNLAIDFLPGALDLDPLAFDVGPGFAGRVLWFDALVGNVDRSWRNSNMLLWHRSPYLIDHGATLTFAHDWAAAGRFPVRPFDAGDHVLLGAHPDLAAADAALAPLVTAELLDDVLALVPDEWLDGEDGFDSAGAVRDAYRDALLGRVAQRSSWLPGVAETIAAGRPRPVAREPRHPSWLRIGGAGR
>AP018920.1|BBG01278.1|2612188_2612656_+|hypothetical-protein
MYRSLTGTPRDVVLLVGRVLLAYILVMHAWNKVQAGLFDTAAVFSKFGIPLAIAAASFTIVVELVVSASLLLGLRMVVPSALMVFIMAGAIWFVHGQNGLFMADNGWALVGVIICGLLAVMAAGPGRFSVDALLAKQADRRIEQTQAIPRQTVSV
>AP018920.1|BBG01277.1|2611622_2611862_+|hypothetical-protein
MSVLVSDTSPSFRSVRGAARRHDPRVAAAPDGGNGHHPGRGRTVLRTLGRPGVPPVAGGAVHDGRSVGDARLQVAGNRG
>AP018920.1|BBG01276.1|2609968_2611645_-|glucose-6-phosphate-isomerase
MSETSTDITATPEWTALTEHAAEVEPRHLRSLFDDDPGRAAALTAQGADLVLDYSKHRITGETVRLLGALARAAGLRERTEAMFTGERVNTSENRAVLHTALRLPRDATLVVDGQDVVADVHAVLDRMGAFTDAVRSGEWTGFTGKPIRTIVNIGIGGSDLGPVMAYEALRDYAQRDLECRFVSNIDPTDLTEAVTGLDPATTLFVVSSKTFTTQETLTNARNARSWLLAGLGTDDDKAIAQHFVAVSTNAEKVAGFGISTDNMFGFWDWVGGRYSLDSAIGLSLMCAIGKEHFAEFLAGMHAMDEHFRSTPPEENLPVIAGMLGIWYTNFFGAETRAVLPYSQYLHRLPAYLQQLTMESNGKSVRGDGTPVSTVTGEIFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFAQPHHSLPGEEDGDTADMHDLFMANLFAQTAALAFGKTAEEITAEGTPADVVPHKVMPGNRPTSTILAEKLTPAVLGQLIAFYEHVTFVEGTIWGIDSFDQWGVELGKVMARQFGPALSAVDPPVAGEAGLDASTAALIERYRAWRGR
>AP018920.1|BBG01275.1|2609330_2609972_-|hypothetical-protein
MITRAPRLLAVVAFVLLAAAVALMAVASSGALAEQDVGTAVGLADERRPAATTTALVVTELGNTAASALLGLAAGGVLAWRGRRAEGLCVASVPLLTSVVFTVLKRILDRARPPEEIQVLAVANESLPSGHAAMAAAAWTVLVLVTWPRLAACGRALLAGFAVLWIGAVGFTRIYLGVHWLSDVLAGWALGAGLAFAGVAVLSVLPARRPAGT
>AP018920.1|BBG01274.1|2608734_2609322_+|hypothetical-protein
MILGVPDDSDAALLFVDRGLVRAEQGPPDRDAQQRAYALAWWARRLRFAVPVVLLLAVLGAFLGTGPALVGLVLMVLMLVALLLVARRAQVAHAVAGLPVPIENIAEVSKAMRAVGAMTRVLATDRRWRRSASAGEATGVLRTWARGADVLRGAWLRADVVAWIETSRELAATRSRAEAVTRSLDPPVEEQPPGS
>AP018920.1|BBG01273.1|2606825_2608631_-|hypothetical-protein
MSERMRVRAPELRGRRWLNTGGRDLSLAGLRGRIVVLDFWTFCCVNCLHALDELRAVEQEFGDVLTVIGVHSPKFVHEADPAAVEAAVERYGVEHPVLDDPELITWDAYAARAWPTLAVVDPDGFVVARMAGEGHGPGLAALVRELVAEHGDRLRRGAGPYLPPPAPETALRFPGKVIRLPSGRFLVSDSAHHQLVELADDLITERRRFGDGNRGLRDGPAATARFAEPQGLLLLPDADSVLVADTVNHAVRSLSLTTGTVRTLAGTGRQLRERIPPGSGAAELSSPWDLTLWDGRVVVAMAGSHQLWALDPDTGAATVLAGTTNEGLRDGSLDTAFLAQPSGLATGPDGTLWVADSEVSALRRVQAEPVTGPQLGTSVGLGLFDFGHRDGPAAEALLQHPLGVTVLPDGSVAIADTYNGAVRRFDPGRGTVSTLAEGLAEPSDLLVDGDTLVVVESAAHRLVRIPIPAGALVTGDAHRVRRAPTALAAGTTLRIGFTPPAGQHLDDRFGDPTSLTVAADPPELLRSGGGTATGLSRELDLDPAVASGVLQVAVAAAACDAAPDGSSGTFAACHRYQQDWGIPVVVTPDGPDTLELDLRSV
>AP018920.1|BBG01272.1|2606170_2606818_+|DNA-binding-response-regulator
MTMRVVLAEDSMLLREGLVRLLEEAGATVLAAVGDGAALVEVVAEHHPEVAVVDVRMPPSFTDEGLRAALEIRSRYPDIGILVLSQYVEESYATDLLEAGGGVGYLLKDRVSKLADLSDALTRVAAGGTVLDPEVVSALLTRRRRRDPLEELSPREREVLELMAQGRTNTAIGRLMVITQGAVEKHISSIFTKLGLPPSSDDHRRVMAVLTWLEG
>AP018920.1|BBG01271.1|2604668_2606138_+|histidine-kinase
MPETSRVPGGDPAGAGDPMAAPERIPAGNALDPHLVRAMEGWGAAGVREPVFREGPLHLPQSMHWPSGWPGRTRLGAQMAYLLAGLPLAILSGLVVIIGLALGAGTFVAWIGIPITVGTLAAARGFAELERRATEAATGMPLPPHHYRPNRGRRLMGRLFRALVDPQSWRDVAHAVTALPLRAVTAAVALAWSVTGLGGLLYVFWQWSIPRGSEDWTLFRSVTGVHSGVGDIALNTGLGVLLLVTLPTVVRWLTDVRALLARGLLTNQTAALRARALALASGRRAAVAAEAQTLRRLERDIHDGPQQRLVRLGMDLESAVRRLDDDPERARPLLHEALEQTHEALSELRALSRGIAPPILADRGLGPALAAAAGRCPVPVDLDVGLDAGARLPALVENTAYFVVSEALTNIAKHAGASAVSVTVTADETLLRVVVRDDGRGGAHPGKGHGLAGLIDRLEIVEGSLDVHSPPGGPTVLTAEVPVAGLGEG
>AP018920.1|BBG01270.1|2603380_2604538_-|acyl-CoA-dehydrogenase
MDPSDLQDVLDSVRDFIRTEVVPLEERIDAEDAVPEQIIAQCKEMGLYGFTIPEQYGGLGLTASEEMRMAFELGWTTPALRSLFGTNNGIAGHVLLEGGTEEQKQQWLPRLASGEVTASFGLTEADAGSDPSSLTTRADRDGDSWVLNGSKRYITNSPIADVIMVFARTDRDAPGNRGLSTFLVPRDTPGLTIGPKDHKMGQFGAWTADVHLDDVRVPFDAVVGGTDGIDNGFRTAARCLAHGRLHIAAVCVGMADRLVHETVEFARTREQGGKPIARFQLVQGLVADSVTDARAGRGLVIDAARSFDDGSDTVSGPATAKYFCSEMVGRVADRAVQVHGGAGYMRGVAVERFYRDARLFRIYEGTSQIQQVIIARDALGKAARD
>AP018920.1|BBG01281.1|2614400_2614880_+|hypothetical-protein
MSEDDRTREMSRDPRVPRRPALQASRLWAGGVATAVIAALIAMVGFLIVRVLLQIPYLAPIEGNTIGGWDGAVQLAIAAAIAALAATGLAQLLLVAVPSPMAYFGWIAGLLTAVATVYPLAFSTEPLTVRIATGAIHLVIGMAIISLVTTTVTSASTRT
>AP018920.1|BBG01282.1|2614905_2616255_-|putative-cytochrome-P450-140
MAGSRGARRWIRWVLRHGAVRREVSRQAGKGDLGARMIIDPEAVRDPYPHYEAMRSQGRMVRSALSWTTVDHEITTEVLRSPDFCVGMRMPENAPGLLKAALRAGGSWPLGPAEPPSLLSIDPPDHNRIRKLVTRSFSAKAITRLRGRTEEVATSLLDDMGAGGGTHRRADVVEQYASLLPATVIAEMLGAPLEMREDFLRWGEGGAYSLDMGLTYPMFRRSEKDIDALADWMDGHFDDLRRTPNDSILSSLVQAYDEEEGRLTHDELLSLALLLLAAGFETTVNLIGNGTRLLLTHPDQLERLRADPSLWPNAVDEILRFDSPVQRTGRVAARDTEVCGFPVKRGALVLTQLGGANRDPAVFTDPDRFDVGRENADRHVAFSQGIHYCLGAALAKMEGEVGLRALFDRYPDLRSDGPPELRGTRVLRGYRSLPVRLGEARTGAPEPVG
>AP018920.1|BBG01283.1|2616388_2617261_+|metallophosphoesterase
MAAHNGPRLLAVSDLHVRHAENRAIADALAPAHPDDWLIVAGDVDERVEGVVGTLAALRERFSTVLWTPGNHELWTRAKNARAEEVEQLAGVARYDELVRRCREIGVHTPEDPYPVWDGPGGPATVAPLFVPYDYSFLPAGTSTSAEGLAAAYAAGVVCTDEHLMYPDPYPTREAWSVARVAATTERLDALDETLPTVLVNHWPLVREPCDVLHYPEFALWCGTTATADWHLRYRAVAVVHGHLHIPRTVTVDGVPFVEVSLGYPREWRRHSERIGGHFPELLPRTVLGG
>AP018920.1|BBG01284.1|2617323_2618367_+|hypothetical-protein
MSAVSSGNALTFLSPTEVDHRWVALVDELSRRGLLVGAAGMAALLAGCGRSGAGPVGERTGETVRAETPFGTFDVPLAPERVVVLEGRQDLETAVVLELPRPVGLGDNAVDERGRTAGFLGFDADGIQLMPGGEVDLEAVLALQPDLIVGRASNIEPVAEQLARIAPLVPAEIDETTWRPDLEAAGRWTGRSAQVDAAIARYEALVAEVRERHAAALGTALAVVLQPGEDGAWYSSPSDGFLLQGRTLRELGGRPLPAVEAVAPPTPGGMSEFSAEQLGLLTDADVLMVASFTEGQRAGLEASPLWSRLPAVRAGRVVHTDIRTNRGSVLAAGECARLWDRAYSLLR
>AP018920.1|BBG01285.1|2618352_2620011_-|hypothetical-protein
MTAPRPRALVRRWARGSGPRLVTLAAVVLVGSAATAAVPLLTGRAVDLLAGGGTVEGALPFLAGVAGAGGVAAALLGLRTWLAHRIAEDVLAAARRDVHSAVGARNPLISERHPPGSLLSVLTVDVDALRIACRDAVPEIVASTALFVWVVVMMLVLSPVLTAVVLAGLPFVLVAAVHFRRVSGPAYADQRRELAATVGRLTEDLHGARTAVALGRDDDRRTGLMARHDRYLGTEFRAMRARNRFFPLLVGVEGLVVVAVICIGGAMTITDAIGLGIVVTFALALGQVFGPLRQLSTWVDLLQAAAAALDRIAAVVREPATIATPADRPVRPLPATGDLELDDVRFGYTPDRPALDGVTLRIRAGERVALTGATGAGKSTVARLLVRWADPGSGSVRFGGVDLRDTDPAEIGRTILFVPQEGLRLPGTVGDILRLLAPEASGSAAEQALREVAGSRVHPDDDARTLADGHAQLVVLAAVLLADPAAVILDEATAALDPDVSARVDAALDRVLTGRAVLVIAHRPETVARCDRAVLLDRGRLRPVPAAGSAEQ
>AP018920.1|BBG01286.1|2620007_2621675_-|ABC-transporter-permease
MRTQRTRRARTTPARSPLRTLVAAYRLRGRAVLAGWGFGVGWQGAQVLAPLVVAAAVDQGIVGRDPWALGAWSAVLVGLCVIEMTLTALRHRFAIIPAVQISLRLREDLLARAHRAEPAGTGRSPGDLVARSTSDVDTVGGMVDFTPSTMACLVSTAAVTGTLVLIDPLLAAAVLVPLLPVGIAFWWWSRRLQDAARAAQRSAAALSTLAEAGLDNDRIVHGMGAVGALHARWDDAVGAARRDGLRLGRLRSLLLPVVELLRVVAAVAVLLVGARLLAADRISVGELVAAASYVVYLGPLLSQIGAFVAEWRGALASAARIESAVPQPHRARTGPELPPAGPAGRHLRAEGLTVAGTRIHGLDLDIAPGTVCAVLGGTDDGLPELAEVLTGRRAPDGGRVRLDGVDVTGRPLAEIGEVGRSAFLFSGTIGESVTFARPDASHGDVAAALARSRADEVLGVVPDGLGTALPPGATTLSGGQRQRIALARALVADPTVLVCTDVTAALDANTASAVVRGLRDRGRTTVLLTTDPQVAGWADREIDLRPGERSEGVPR
>AP018920.1|BBG01287.1|2621671_2622526_-|hypothetical-protein
MRHTGSPIAREPLADTLRRAGNLPGAADGLHPAVPATGSGWIRCSDVDGAWYRQWERRIATALHDEHGRTDATAAAALALIWYAGVPGRLGGAAFRVARRVPRLGPDQVGFRISGDQPYLTGYGLFDTRFWCLPDDPDAAHPDATTVPDEQALADLLRAEVGRHADRFLEETVPGARLPRRSLRGAFLDGIAVGIWVAGDQSAAAGPAIRRDAELVAPADTPEFGAPATVRVVTDVEGGDHVHLTRVCCCYLFRVVDDARPCATCPRVPQHRRPPLLARDAHDR
>AP018920.1|BBG01288.1|2622642_2623971_+|pyridine-nucleotide-disulfide-oxidoreductase
MNALRVAVVGAGPAGIYAADTLVKSDTEVAVDLFEKLPAPFGLVRYGVAPDHPRIKQIVNALHRVLDNPAVRLFGNVHYGTDLTLTDLREHYDAVIVATGCERDRDLEIPGIDLPGSHGAAEFVRWYDGHPDVGRDWTLDASSVAVIGAGNVALDVARVLAKSAEDMLSTEIPDSVHAGLAVNPATEVHVFARRGLAQAKFSPMELRELDHVPGLEVVVDPEGVEFDDGSMADIRATKHVQMVVKILQDWAIRDRRGDPRRVHLHFFARPDRVLGTDRVEGLRVERTEYTGDGSVRGTGVYTDYPVGAVYRAVGYTGSELDELPFDAARGVVPHEAGRVAGLSGVYAVGWIKRGPVGLIGHTKGCASETVGSLLADADDLPRAPQRDPEALGALLESRGVAVTTWDGWLALDKYERGLGEARGRERIKVIPRDEMTRISRTG
>AP018920.1|BBG01289.1|2624049_2624301_-|50S-ribosomal-protein-L31-type-B
MKPGIHPSYGPVVYQDMSTGDRFLTRSTATSRETVEWSDGNTYPLIRVDITSSSHPFWTGNTRVLDAAGQVEKFRRRFGERKR
>AP018920.1|BBG01290.1|2624373_2624940_+|hypothetical-protein
MDGFTVVRCGSCADMPSGFDDAGFDSADSADSADSADSADSADSAAADSAVADSAVGADSAADAADAADVVDATEGVVAALPGIDEVLFEGLRAVVRDSPHGVLVTAGCRLGPGVCAARRPGLMLLVQACVPDRSRPTSPVVAVGPVRSTSDVRVVTRWLQGGGAPDPMALPARLRCAISSAPIGRGR

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Crispr_ID: AP018920_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_10

2913502-2913575

Orphan

Consensus_repeat	Method
CATCGATGTCAAGATCGTTCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_10

>merge|AP018920|10|2913502-2913575|CRISPRCasFinder
CATCGATGTCAAGATCGTTCTTGCGTATGATCTTGACATCGTGATCGTTCGCGTCGATGTCAAGATCGTTCTTG

>AP018920|10|8|2913502-2913575|CRISPRCasFinder
CATCGATGTCAAGATCGTTCTTG	CGTATGATCTTGACATCGTGATCGTTCG
CGTCGATGTCAAGATCGTTCTTG

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG01572.1\|2915637_2916393_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01562.1\|2908066_2908927_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273682
AP018920.1\|BBG01565.1\|2910518_2913086_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281364
AP018920.1\|BBG01571.1\|2915428_2915641_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378935
AP018920.1\|BBG01559.1\|2905772_2906324_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274035
AP018920.1\|BBG01575.1\|2916965_2917442_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01567.1\|2913732_2913996_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01570.1\|2914930_2915167_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01563.1\|2908952_2910224_-\|histone-H1	unknown	unknown	gnl\|CDD\|377413
AP018920.1\|BBG01574.1\|2916738_2916969_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01557.1\|2905144_2905324_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01560.1\|2906327_2906576_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01564.1\|2910223_2910505_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01561.1\|2906690_2908055_-\|phage-capsid-protein	unknown	unknown	gnl\|CDD\|377449
AP018920.1\|BBG01569.1\|2914402_2914927_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01566.1\|2913027_2913324_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01576.1\|2917613_2917790_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01573.1\|2916509_2916746_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01568.1\|2913992_2914406_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG01558.1\|2905329_2905770_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG01563.1\|2908952_2910224_-\|histone-H1	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	9.21351e-79
AP018920.1\|BBG01562.1\|2908066_2908927_-\|hypothetical-protein	gnl\|CDD\|273682	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family. This model describes the prohead protease of HK97 and related phage. It is generally encoded next to the gene for the capsid protein that it processes, and in some cases may be fused to it. This family does not show similarity to the prohead protease of phage T4 (see pfam03420). [Mobile and extrachromosomal element functions, Prophage functions, Protein fate, Other].	2.34997e-19
AP018920.1\|BBG01565.1\|2910518_2913086_-\|hypothetical-protein	gnl\|CDD\|281364	pfam03354, Terminase_1, Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.	1.06366e-10
AP018920.1\|BBG01559.1\|2905772_2906324_-\|hypothetical-protein	gnl\|CDD\|274035	TIGR02215, conserved_hypothetical_protein, phage conserved hypothetical protein, phiE125 gp8 family. This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of pfam05135, a putative DNA packaging protein family. [Mobile and extrachromosomal element functions, Prophage functions].	6.839e-05
AP018920.1\|BBG01561.1\|2906690_2908055_-\|phage-capsid-protein	gnl\|CDD\|377449	pfam05065, Phage_capsid, Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.	3.13539e-32
AP018920.1\|BBG01571.1\|2915428_2915641_-\|hypothetical-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000224447

>AP018920.1|BBG01566.1|2913027_2913324_-|hypothetical-protein
MAGQRREKPPFQPLVSVVDAVEGVLSEAPVVHPGHHALYAIAIALAQKLDEGAGMATAAVAAELRATLADLLVTEESDDDADAWLRDLSTPVGDPTTP
>AP018920.1|BBG01565.1|2910518_2913086_-|hypothetical-protein
MPTPGSETCQPRWATRRRPERATLGPKVAAVAEQLGTPLMPWQRFVADTALEINPDTGRLAYREIGLTVPRQSGKALDLATELLTENRGWTTMADVRVGDRVFHPDGHSVAVEFVSDVMHGHDCFRVTTVDNRSVVADADHLWTVTDKRAERCRGSRGPGRTRWFETRTATTRELLDSGLSRYPGGTRETSTNGKRYATRENRYVLPRQAPVKLPDADLPVDPYLLGVWLGDGASTSAQISSGDADVEEMCTLLESTGARIVSRRRDRTCWTVRVGVGTLKQSELGARLRQLGVWGDKHVPDQYLTAAEAQREALIQGLMDTDGSIGTNGHAEFCSTNQRLAAAVLFLARSLGWRAVSKESAARIEGREVGRRWRVTFTPVADDPFNPFRLVRKSTRRKPSDGRRGRATLSIESIVPVESRPVRCIKVGSPDGLFLAGRDLVPTHNTTLILALAVHRALGFDGQRQVIAYGAQTRNDARIKWEDEHVLALERSKVFRKLFSVRKTNGNEAILWRNGSKHGIVANTEKSGHGATLDLGFLDEAFSQVDNRMEQAFKPAMITRPQPQLWVVSTAGNDSSVYLKQKMAAGRAAVEGGSGKGLAYFEWSAPEDADPSDPATWRACMPALGHTISEEAIAADFSSMELIEFQRAYLNQWPDRNATDPVIQPGVWAHLADTRSQVVDPVVFAVDAAPDRSSAAIAIAGRRTDGVGHVEVVDRRDGTGWLLERVKELHARWRPAAWVLDPASAAGSLLPALQDLRIEPVLVTGREMAQACGQFYEDVVERHAFRHRDQPELNKALYGAQKRRLSDAWAWDKRTSGADISPLVAATLAWHGVAVKGTPVRSAYDSPDAELMVV
>AP018920.1|BBG01564.1|2910223_2910505_-|hypothetical-protein
MELVVLTAAVLILLVGVGVHVFDRVSAARLGARRRVLVQMKSGRAFTGIQWRRRSGLLELRGVEMLEPGNQPQTVDGSVILDRVEIEYVQVAG
>AP018920.1|BBG01563.1|2908952_2910224_-|histone-H1
MAFTISEGQVASSASGHAIPRSGHLQITDNDFPTYAQMWKRQPQIRTVVGFLSRNIAQMGIHVFKRVSDLDRERVADHPLSKLLARPNPYTTTFRLIEALVADIAIYDCAFWLKVRSADGSDPALLRLDPAQVTLEGKNPFMVESFRYGRRRFQPEDVVHFHGYSAIDNRTGTSPLESLRQILAEDFQASLFRSQLWRNGARLSGYIERPVGAPEWSRAGKEAFRAGWQSQYTGDGARPGGTPILEDGMKYVPAGTSPRDAQYIEARKLTREEVTSAYHIPLTLVGLLDSATYTNISEQHKIMYSDTLGPWLNMIQQELALQLIPDFDTSGHIYAEFNLAEKLRGSFQEQAAQLQTAVGAPYMTRNEARARLNLPQVDDGAELITPLNVLVGGQASPRDSAPDPADRNDNPAPEPTQLRAVER
>AP018920.1|BBG01562.1|2908066_2908927_-|hypothetical-protein
MQVKTCPITVKTAGTHEGAEEGIVEAIVAAYNVDSVGDQIVPGAFGKSLARHKAAGNNLPFVWSHQSDDPDSYIGEVLEAEERPEGLWVKARLDMDEPKAAKVYRLLKGRRVSQFSFAYTEIDARPAGKNSPGALKELHELDIHECGPTMVGANPATALLGVKATKTEPCPTCGHATGEKHTATPEAPTEPADSPAEVPFEDRVQELVKQAVQDFLRESAEADTTPVSPTESEAEEATPAEPANPVEPPAAEPVAAEDVPASEGTADVRLLTELDLLEVELDMLND
>AP018920.1|BBG01561.1|2906690_2908055_-|phage-capsid-protein
MSTTTVDAAEEMKVHLKAARDISEVAEKAGRDFTDEERGQVNELVAKAKAAQERAKQAKGDAAVRAAIADLDGVEVQEKSGSFRTPSGLIVPQRGGKSLGQLYVEGNEFQELMHSAPGGHFQKNHRINTRPTGFSSLTPNRGSKALVTGVSQTSAGSLIEPDQLGLRVGLEPFQRPLTLRDLVTSGTTSTDSIEYVRVTSITNNAAPVPEATASTQQLTNAAGGYKPESALATAKVTTPVRTIAHWIPITKRALSDAAQMVTLIDSFLEYGLEEELEDQMVAGDGTGENLEGLANVSGVQSQAWDTNRLVTTRKAKTKVRITGRSQPNGYVINPADLEEIELLREDTGAGAGTGAFFFGGPAAAGQAPTLWGLPVVESEAVPAGTAYVGDWRKAILWDREQSSITTTDSHDNFFVRNLVVILAEMRAAFGVIQPSAFVEIDLSGEPEAGGGGGG
>AP018920.1|BBG01560.1|2906327_2906576_-|hypothetical-protein
MALHLYEVGVRRHTTVMKLSDEDAKAFAERDGLEVKKLGAAKPAARVDVPAPSYAVDEDGGELPKDDGGVRRRGRQPRNKQA
>AP018920.1|BBG01559.1|2905772_2906324_-|hypothetical-protein
MPLITLDQVYAHLNMDQPDPNDVPELQRFIDAAVDAIEGFTRLTVDPQNMVEVVTVPPSGVVVLRNRPVMSIADLQAVDGSNTQWNPSDAVIDPDTGIVRLAPVGVSGDVRITYVAGIGDPPASFRVAGLIIVAHLWQTQRIPLSGRRAFGGGADNGTLESGAGWAIPRAASDLLPAAAPLMP
>AP018920.1|BBG01558.1|2905329_2905770_-|hypothetical-protein
MHAPDIIEALHSLVQAEFSPDGVQVVDGPPSDDIDAANAIGLAVNAEGGEIAPAQSSSQFGLGSYRGELDLACLLQSSSGSDDFPRLRRQAYALLRRFPPVLAELTQRPDVVDARIPNHTYTPIRDNQAFTALIQFVVRIDTYEKE
>AP018920.1|BBG01557.1|2905144_2905324_-|hypothetical-protein
MTDHVMAKNPANGHVVRMSPAKFRIMQRSGWTEAQSTPPSRSGSKAATGGLVEVEKENG
>AP018920.1|BBG01567.1|2913732_2913996_+|hypothetical-protein
MVTVRLPAVRIQMRLGEHRPIAERAQLPRVPGQVGQEPGGGGAVVVAVPAGGGGSTWRHSHLLRDHPVHLMAGGCVAPRGCGAKEWV
>AP018920.1|BBG01568.1|2913992_2914406_+|hypothetical-protein
MTVTRGQDPSTHPAGGGAAPRRRVAAVVGGLVLVVALATVGLWVAGTAATGPSAGQREAYVEQVQAGWLAGGERMRDLPAPLVGGPLDAGWTEDELVEAGGLVCDGVGQWGLVARYPDHVGVFSAQVVVEAAQQHLC
>AP018920.1|BBG01569.1|2914402_2914927_-|hypothetical-protein
MAVRFDNANDCLTATSGLPSGTALTVTWWAYVSVNRDTWGTMVAADRNGNPVSFDACNNGLATHLYANTDTQLFAAGTLTVTATSGLPVDRVNITATGNPTITPAGGVDGQILRINVAASGAARTVTLASAVRTTTGITTRTLDVPSGQVAMVALEYSTLINAWSLTATAVTAT
>AP018920.1|BBG01570.1|2914930_2915167_-|hypothetical-protein
MEHRPRVYAEHLNHSLFRRPGWYWRLHCDCGFTSPYGLLLTWPVALKFANTHAWAARRYEARIDAQVEAFRQQLDARG
>AP018920.1|BBG01571.1|2915428_2915641_-|hypothetical-protein
MRRPLVTAELAALHLATTYGLQVTPATIRKWAARGHFPSHGARGSRHCYDLEEVQHFAEHHRVDTQFVAH
>AP018920.1|BBG01572.1|2915637_2916393_-|hypothetical-protein
MNTTHPDTPEDRPTWACALHRPPADGQDWVPADRGYATCSNCLDRLRAVMRDIGDRYRMLDPTPQKGATGRGAPGFGSRSPASDHVIAFTDPRSSQTAKVWVDRAGRACREDERPPVSIRGELDILAWDAADRLGLAGPHHRADVHDLLRHLDQRLDLITRDPDLVVEVAFKLRALQAALRPVTGDPRPKFIGLCPELLPEPDEAGVPLVCSARLYAPIKDSSVNCRSCGAHWPRERWLELGRSLQVAPAA
>AP018920.1|BBG01573.1|2916509_2916746_-|hypothetical-protein
MPEPRPAGPILDALGVTFDLDDHDHVTDALVIAKTVDASTGEHGVVIGQTAVTDWVTQLGLLAVAQRLVDGAEIGEGD
>AP018920.1|BBG01574.1|2916738_2916969_-|hypothetical-protein
MTDRGVAIEKLLRAASWDDGGAPALDYPDAVDALAALGVTRAEVDQIIDDDVVIGGLDGWRDLGLRMYPQWKVVDA
>AP018920.1|BBG01575.1|2916965_2917442_-|hypothetical-protein
MTDLVEFLTARIDEDEQLARTVEQAVGAERKGEPYSDGSGIAAGDAFPTYPWGMVPEELPFMAGAGHPSRVLADVAAKRAILAAHPPVRFTDATLGLHDVEVCWRCHVRLDYPDDWDEQGAEGWTYPLVQERFPCGTVRALALPYRSHPDFNPAWEVA
>AP018920.1|BBG01576.1|2917613_2917790_-|hypothetical-protein
MDPVNGHQAVDARLGNTSAELPTDTVQRATRFARRRCDVLGFGEAEIGEVLGMLGLDR

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Crispr_ID: AP018920_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_12

3684107-3684266

Orphan

Consensus_repeat	Method
TCACCAGTTCCAGTTGCGCATGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of AP018920_12

>merge|AP018920|12|3684107-3684266|CRISPRCasFinder
TCACCAGTTCCAGTTGCGCATGGCGTACTCCTTTCCCGATCGAGTCGACGGCTTTCGGACGCGGTCACCAGTTCCAGTTGCGCATTGCCCGATCCCCTTCCGGCTGTTCGCGGTGATCATCCCTTCGCGATCTGTTTCACCAATTCCAGTTGCGCATGTC

>AP018920|12|9|3684107-3684266|CRISPRCasFinder
TCACCAGTTCCAGTTGCGCATGGC	GTACTCCTTTCCCGATCGAGTCGACGGCTTTCGGACGCGG
TCACCAGTTCCAGTTGCGCATTGC	CCGATCCCCTTCCGGCTGTTCGCGGTGATCATCCCTTCGCGATCTGTT
TCACCAATTCCAGTTGCGCATGTC

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG02288.1\|3679284_3680289_-\|F420-dependent-glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|213827
AP018920.1\|BBG02289.1\|3680699_3682742_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
AP018920.1\|BBG02290.1\|3682738_3683485_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	unknown	unknown	gnl\|CDD\|224982
AP018920.1\|BBG02300.1\|3696690_3699270_+\|helicase	unknown	unknown	gnl\|CDD\|378795
AP018920.1\|BBG02291.1\|3683494_3684070_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378981
AP018920.1\|BBG02287.1\|3678508_3679288_-\|putative-enoyl-CoA-hydratase/isomerase	unknown	unknown	gnl\|CDD\|235852
AP018920.1\|BBG02285.1\|3676361_3677315_+\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|379279
AP018920.1\|BBG02293.1\|3685937_3686651_+\|methyltransferase	unknown	unknown	gnl\|CDD\|369777
AP018920.1\|BBG02283.1\|3674638_3675196_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|376823
AP018920.1\|BBG02282.1\|3673853_3674576_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223632
AP018920.1\|BBG02294.1\|3686634_3689016_-\|DNA-helicase	unknown	unknown	gnl\|CDD\|226482
AP018920.1\|BBG02295.1\|3689240_3690545_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
AP018920.1\|BBG02296.1\|3690519_3691542_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
AP018920.1\|BBG02301.1\|3699361_3701512_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
AP018920.1\|BBG02292.1\|3684555_3685893_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
AP018920.1\|BBG02299.1\|3694853_3696569_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236599
AP018920.1\|BBG02297.1\|3691668_3694053_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|224471
AP018920.1\|BBG02286.1\|3677596_3678493_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226156
AP018920.1\|BBG02284.1\|3675432_3676344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379605
AP018920.1\|BBG02298.1\|3694049_3694781_-\|hydrolase	unknown	unknown	gnl\|CDD\|213673

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG02288.1\|3679284_3680289_-\|F420-dependent-glucose-6-phosphate-dehydrogenase	gnl\|CDD\|213827	TIGR03554, F420_G6P_DH, glucose-6-phosphate dehydrogenase (coenzyme-F420). This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases. [Energy metabolism, Pentose phosphate pathway].	0
AP018920.1\|BBG02289.1\|3680699_3682742_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
AP018920.1\|BBG02290.1\|3682738_3683485_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.38661e-66
AP018920.1\|BBG02300.1\|3696690_3699270_+\|helicase	gnl\|CDD\|378795	pfam12029, DUF3516, Domain of unknown function (DUF3516). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with pfam00270, pfam00271.	0
AP018920.1\|BBG02291.1\|3683494_3684070_+\|hypothetical-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	7.23226e-10
AP018920.1\|BBG02287.1\|3678508_3679288_-\|putative-enoyl-CoA-hydratase/isomerase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	7.34188e-54
AP018920.1\|BBG02285.1\|3676361_3677315_+\|anti-sigma-regulatory-factor	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	1.53629e-13
AP018920.1\|BBG02293.1\|3685937_3686651_+\|methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.31065e-25
AP018920.1\|BBG02283.1\|3674638_3675196_+\|peroxiredoxin	gnl\|CDD\|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	9.69159e-12
AP018920.1\|BBG02282.1\|3673853_3674576_-\|hypothetical-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.71841e-27
AP018920.1\|BBG02294.1\|3686634_3689016_-\|DNA-helicase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.53808e-108
AP018920.1\|BBG02295.1\|3689240_3690545_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.06811e-45
AP018920.1\|BBG02296.1\|3690519_3691542_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.74163e-50
AP018920.1\|BBG02301.1\|3699361_3701512_+\|GGDEF-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.11944e-93
AP018920.1\|BBG02292.1\|3684555_3685893_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.74434e-48
AP018920.1\|BBG02299.1\|3694853_3696569_-\|hypothetical-protein	gnl\|CDD\|236599	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed.	3.49364e-62
AP018920.1\|BBG02297.1\|3691668_3694053_-\|glycosyl-hydrolase	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	0
AP018920.1\|BBG02286.1\|3677596_3678493_+\|hypothetical-protein	gnl\|CDD\|226156	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].	1.80196e-13
AP018920.1\|BBG02284.1\|3675432_3676344_+\|hypothetical-protein	gnl\|CDD\|379605	pfam14417, MEDS, MEDS: MEthanogen/methylotroph, DcmR Sensory domain. MEDS is prototyped by DcmR and is likely to function with the PocR domain in certain organisms in sensing hydrocarbon derivatives. The MEDS domain occurs fused to Histidine Kinase and as stand-alone version. Sequence analysis shows that it is a catalytically inactive version of the P-loop NTPase domain of the RecA superfamily.	8.63755e-22
AP018920.1\|BBG02298.1\|3694049_3694781_-\|hydrolase	gnl\|CDD\|213673	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433., beta-phosphoglucomutase family hydrolase. This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).	1.48238e-53

>AP018920.1|BBG02291.1|3683494_3684070_+|hypothetical-protein
MDRTIDWNTELGAQLTFHWEQQLRPRLAGLTDDEYLWEPVRGMWSVRPRGESVTPPGAGSGDRVIDFVFPVPEPPPVTTIAWRLVHVIVGVLGMRVHSHFGGPPVDYDSHACAGTAAEALAQLDEAYRRWTAGVTALGSDGLARPCGPAEGPYSDAPLATLVLHIHREVIHHGAEIALLRDLYAASPPVRG
>AP018920.1|BBG02290.1|3682738_3683485_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase
MRPLIGITGYTERASYWIVEDEETVLIPRGYLDMISAAGGTPVLLPPTSDAADAAAACDGVLVSGGPDIGAAHYGAVRGPHDDDPRPERDAADLAAVRRALDLGIPVLGVCRGHQLLNVALGGTLHQHLPDVVGDGVAAEHSAGPGSYAPVQVVAEPGSRAAAALGTEPVTVRCHHHQSVDRLGAGLRVTARAGAVVEAIETGDGGPWVLGVQSHPERSPDDLRLAGALVAAARSRSTTRTAPDLVRS
>AP018920.1|BBG02289.1|3680699_3682742_+|ATP-dependent-DNA-helicase-RecQ
MFDPAAPDEIPLPPEPDDDHGWEPPPDDGPGGSEGPAGSAGPGGRGGSARSGGFEDPGRSDMPTDEPVVPRVRSSDPQEVLRRVFGYDAFRGDQQEIVSHVVAGGDALVLMPTGGGKSLCYQVPALVREGTGVVVSPLIALMQDQVDALQALGVRAGFLNSTQDADERRLTEQEFLAGELDLLYLAPERLRVESTVRLLERGRIALFAIDEAHCVAQWGHDFRPDYLLLSELHGRWPDVPRIALTATATEATRTEIAQRLQLTDARHFVASFDRPNIQYRIAPKNEPRKQLLELLRAEHAGDSGIVYCLSRKSVEQTAEFLSGQGIRALPYHAGLEAAVRRNNQSRFLREDGLVMVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGEPSTAWLAYGLADVVQQRKMIDDSEGDAAHKRRLGMHLDAMLALCETTECRRVQLLRYFGQDAGTSRCGNCDTCLTPVSSWDGTVAAQKALSAVWRLKNERRQSFGAVHLIDILLGRRTAKVEQFSHDQLSVFGIGTELSEPQWRSVIRQLVARRLLAVGGLHSTLVFTDDSPAVMRGEKPLMLRSEPERAARSRSRSGPGSKPAVELSADAAPVFERLRSWRAGAAKEQGVPAYVIFHDATLREIASRTPADRAALGTIAGIGEGKLARYGDQVLEVLRGADA
>AP018920.1|BBG02288.1|3679284_3680289_-|F420-dependent-glucose-6-phosphate-dehydrogenase
MDLKIGYKASAEQFGPRDLVEYAVLAEQVGLDSVWASDHFLPWRHTGGHAPAALPWMAAVGERTERVQIGTSVLTPTFRYNPAVLAQTFATMSLLTGGRIIAGVGTGEALNEIAVSGREWPEFKERFARLREAVRAMRALWTEDSVSFEGEYYTLVDATIYDRPEQPVPIYIAAGGPMVARYAGRHGDGFICTSGKGMELYTEKLIPGVEEGAAKEDRDAGTIDKMIEIKISYDRDPEAARENCRFWAPLSLTAEQKHSVGSSQEMERLADELPIEQITQRWIVASDPDEAVEQIRPYLDAGLNHLVVHGPGADQRRFLTQFSEDVLPKLRALA
>AP018920.1|BBG02287.1|3678508_3679288_-|putative-enoyl-CoA-hydratase/isomerase
MSALERDGRVLRCRVSSGRHGTLDGAAMQEVTAALEKLADTDPADPDGVGAVLLHGDGENFCTGGDVRAFAGAEDRYGYVHDLADTFHAMLRPLVGSPVPTVAAVPGWAAGAGMSIVLACDLAVGGRSTRLRPAYPAIGFSPDGGMTWTLPRLVGAARARRILLTDEVLDADALTELGVLASVVDDDAVADEAAALAHRLAQGPTAALGRIRGLLGRTWESTLDDQLAAESDSIATCAAGPEGTEGLTAFTEKRRPRFH
>AP018920.1|BBG02286.1|3677596_3678493_+|hypothetical-protein
MTPAHAESADLATERAPADRSTECSGPRVRVLGAFGLRVDDHPVPLPVDSRRLIAYLAVHPRPQPTAALAADLWSGVGPAPAARLLDEAVTGVDLPELLAADDRGRLHLADDVRVDLAEALLLVRGLSSADLLRTVRDIGCPQTGLLEADILPSWTAPWIAVERERFRQLRLSALEGLAGTLTAVDRHDDAVAVARRAVATAPSRERSRRALVEALLAGGHVSDALAEYEKFQQLLRNSVGATPDSELDRLLAPLDSGWPLGPGLHRPVQRWGVGMPGTHRPAQRGRRLAAGSPASGR
>AP018920.1|BBG02285.1|3676361_3677315_+|anti-sigma-regulatory-factor
MKVNAVPRPPGFAHALVHADDTAELVRRVAPVAAAADRDTGAQIALAVSPDAEQALRAELADCAGGIGRLTTLTRSARESGQTVAAWRARELRALTSSGRPVFVVAQHDPDLDGIDGGFWIELEAALNISLDGLAVTQLCVYPRIPLHGAIGDAAVANHPLQLRAEQLTGNPAFRSPAEVLSALPFAPPHLLGPPDVQLQYNTFELSRVRDAVEEAARACRFDPVRGEDMVQAVNEVATNAVEHGSPEAALSVWSRPGELVCEVHDTGSIPLALIGLAPPHPSRPRGRGTWIARQLCDSLHVWRAHDGTRVRLLVRA
>AP018920.1|BBG02284.1|3675432_3676344_+|hypothetical-protein
MIKLADDVSSGDHVCAIPESVEHLGEIASGFVAHGLARGEKVLFFDDDGAADGLLRRMTEDGHRIDEPLRTGQLEILPEEDTRRTFRTPLPDIHAGITGKVADALDAGWTGTRITGQMHAALDPSASGTLPEYDGLLARLIRENRENLSALCTFDHVHFPDESIDIMRALHRDHLAVAGAYDDGLLRIVRLGIGHARLAGEIDHSNRPKITSLLHQALDGTLRSADAPTDIGLDMASVRFVDVASAVALVHAAEGFPSTHRLVLHRVRPRVQRILDRCGAAFSPQLAFDDDPPRLAPPAQQVR
>AP018920.1|BBG02283.1|3674638_3675196_+|peroxiredoxin
MTDTHSSPGSGPIPGGTLKDIQAPLKQQYRDDPGSAVVTLSADGELGAGVACKVTTGQALAEAGLHPATGGDGTQLCSGDMLLEALVACAGVTLRAVATALELDVSGGLRAEGDLDFRGTLGVAKDAPVGFRDIRLFLDVDVRSGDAAADPDTVATLVKLTERYCVVLQTIKGSATTSVEVRPAS
>AP018920.1|BBG02282.1|3673853_3674576_-|hypothetical-protein
MGGESDTGRAAAVRRGAREARDTVRDTVRDSVHEVAGPPTGDDRLWTVPNALSMLRLAGVPLFLWLMLGPQADGWAVAVLAIGGFTDWLDGKLARVLDQYSRFGAMLDPAVDRLYILAALIGLAIRDIVPWWAVAALLARDVVLAVCVLVLRRRGYGPFEVIYLGKAATFVLLYAFPLLLLGDGPSAAETAVRVIAHAFAIWGVALYMWSGLLYIAQFVLALRSPFPPPTTRFDHPDGGR
>AP018920.1|BBG02292.1|3684555_3685893_+|GGDEF-domain-containing-protein
MSGDPSASGARVPGTGNAARRRPFRQLPLRVRLLLIAVEVTAVLLVAAELLRHGPELLEPRPWIVSGALLVAAALHAELSLGAERMRRRIADTRYIDLSSVWTFAAALLLPAVPAVATVVAVYLHLFLRVFRPAGTPLHRQLYSTSTVVLAVYLVVMLREYSGVGGDVGSVAGVVTLLCCLLVYTLTNTLLVVAVIRLSQPRSSFLAILAGGEIVLELATLSLGALVAVVIVPHYWLLVGLLVPSLLLLEQTTLLRQLEDKANTDAKTGLLNADAWRSRATRLLTAARRDRVAAGVLILDLDHFKDVNDRYGHLVGDAVLASMADVLTGEVRGTDVVGRFGGEEFVVAMGTMKQDPAAGATAVRETCERIRRRVESMSVEVPSLQGAVRIDRLSVSVGAAVQPGAGTELDRLLAAADEALYTAKRAGRNQVRVRDHGGGQAGPAR
>AP018920.1|BBG02293.1|3685937_3686651_+|methyltransferase
MPTDPYDVLAGHYVEHNRTGPYNAYYERPALLELCGDQCGRDVLDLGCGPGVTAAALLGAGARVTALDRSAAMISAAAGLLGDRATLLQHDMNDPLPLPDAAVDTVVAGLSLHYLADWSGPLAEIRRVLRPGGRLVASVHHPMTDRRVPSLAPDGHGDYLDSYPIPIRWSVGAVSASVRFWHHPLGRITGWVSGAGLSLTDLVEPRPVEEMAVDHPGTFAALSAEPAFLLIAATAPG
>AP018920.1|BBG02294.1|3686634_3689016_-|DNA-helicase
MLVPSVEDPRAVPEPTPDPSATGREPEPDPELLHEQAYVGMLYEQLEDRRKDTTRRLADTLREETVGTPQALTQRDAAAALLADKLAALRAAEHGLAFGRLDSDDGETRYVGRIGLLDEQNEYEPLLMDWRAPAARPFYTATAANPEGMRRRRHLRTRLRNVVAIDDEPLNLAEMTEEEQARAGAGLTSEAALLAAVSQARTGRMGDIVATIQGEQDRIIRSKPSGVLVVQGGPGTGKTAVALHRAAYLLYTHRDRLARRGVLVVGPNPTFLRYIGQVLPSLGETSVVLGTVAQLYPGLDARRREDPATAELKGRADMAAVVAAAVRDRQQVPRKPIELVVEQQRVVLDRDTVAQARTRARRSRKPHNEARRTFRKELLRLLAQQVAHRVGAELLDRLDVEDIREELTESAAMAHELEQLWPTLSPEQLLTDLFADRRRLNSVARRIPAAERVLLERDAPDPELPYEQRWSAADVALLDEAAELLGDDGAAQAAAEAAALREEVEYAQGVLDVLDLEEDLDPELLRATDIIDADRLAERMQVSRYDSTAERAAADREWTYGHVIIDEAQELSAMAWRMVMRRAPARSMTLVGDIAQTGDRGGAGSWHDVLSPFVARRWRLEQLTVNYRTPAEIADVADDVLTEIDASLEPPSSVRSTGVPPWAASLPAAGAERDRVLVDRVAAERDAVGEGRTAVLVPAARLEQTRAALVAAGVVDADTDPDELDTAVVVLAVTGSKGLEFDAVIVVEPQEMLTESPRGLSDLYVAITRATQRLGVLHSGDLPPVLKRISRER
>AP018920.1|BBG02295.1|3689240_3690545_+|MFS-transporter
MILRRRDPAARGLRDTIRVLPPAVRLILASMVVFNIGFYLVVPFLAVHLSENLALAGWAVGLVLGLRTFSQQGLFFLGGGLADRFGVRRMVLLGVAVRVVGFLLLGLADDLASVLVAVLLVGVAAALFAPAVESANAAYGHRLETDGVLPRTELFAIEQMCSRLGSVLGPALGALLLAVPFGVTSAAAAGLFALLWVAFLRWLPADASTGTGAGGEQRSGTVAPTLQAVWGTVLRNRPFLVFTVLCGAQLVAYNQLYLMLPEQLDRAVGGQAALGWFFTGAALLVIGGQRTVTAVAARLGHRVAIVGGLALIAVSFLVPPMLTGSAVVTLAGLACWVLLLHLGQMLMVPPMRDVIARLAGERLLGAHFGMLNTLGGGLTLIGALAVGAMYDGVDAGIMAVGTPWWALAATVAVAAGALWTWSRGRPLSPAAAPG
>AP018920.1|BBG02296.1|3690519_3691542_-|ABC-transporter-substrate-binding-protein
MDAVLNRRAVLSLALVGLAAGAVGCSADGGPGADGAPAAGPEAEPGAMPVTIEHQHGATTISSPPQRVAAVGLGDADVLLALGVVPVLVPVWSGSTDDGVGEWARPLLDGAAPVALQDATTRFDLEPIVAAQPDLILAVNNAIDADRYAQLSRIAPTVLHAAGQIDWSLPWREVTTRIGAAVGLPDRAAAEVGGIDDLFARTRAENPGFGERTAALVRVLDGGTLRVFSPDSGRGQLLTELGFRPAPAVADRFGDTFYLDIAAENLPTLDADLLVVDNYDNAREQLDAMPTFQAMPAVRASRLIGLDPVLSDAVSMPNPLTIPYLVEDLLARISQVPLQG
>AP018920.1|BBG02297.1|3691668_3694053_-|glycosyl-hydrolase
MKPDHLPTFTVEPWVVREPRLDLDAMGQTESVFALSNGHIGLRGNLDEGEPHVLPGTYLNSFYEVRPLPYAEGGYGYPESGQTIINTTNGKLIRLLVDDEPFDLRYGTLHRHERVLDMQAGTLHREVEWESPAGRRVRVRSTRMVSLTQRAVAAISYEVELVSNGNEGSGAAGDGALLVLQSELVANEQLPGRDADDPRLDTALDNVLEPEQSRAGDAGATLVHRTRKSELRCGAAMEHEVFGPEGIQVSTDANEDLARTTVIARVQPGQSLRVVKYLAYGWSSRRSLPAVYDQVRAAIAAARYTGWDGLVAEQRDYLDDFWATADVEIDGDAELQQAVRLATFHILQAGARAERRCIPAKGLTADGYDGHTFWDTETFCLQVLSFVAPEAAADALRWRKSILPLAFERAETLGLKGAAFPWRTIRGHECSGYWPAGTAAFHINADIADAVKRHVHATGDTKFELEVGLELLVATARLWRSLGSHDSAGNFRIDGVTGPDEYSSIADNNVYTNLMAQQNLRYAAEVAAKHPRSASRLGVDSEEIASWRDAAGAMFIPFDERLGVHPQSEGFTDHQRWNFEETPADCYPLLLNYPYFDLYRKQVIKQADLVLAMQIFPEAFTEEQKRRNFAYYEAITVRDSSLSACTQSVMAARTGHLELAHQYLAEAALVDLQDLAGNTDHGMHIASMAGTWSAVVLGFGGMRCEADGLSFAPVLPPSLSRVSFGLKWQGRRLRVTITSEDVEYQLLDGAPMRLRHHDEPIALDGEAPVTAPTPAAEWVEPVEQPYGRAPRQRT
>AP018920.1|BBG02298.1|3694049_3694781_-|hydrolase
MLGLPDGTRACLFDLDGVLTDTASVHAAAWKQMFDEYLRRRDGDTFTPFDVAADYGPYVDGKPRLEGTRSFLESRGVALPEGSPDDDADTETLWGLSTRKNDLVQVKITEGVRVYPGSRRYLEAVREAGLVTAVVSSSANAEQILRVTGLETFIDHRVDGVTARERGLPGKPAPDTFLAAAADLEVDTSAAVVFEDALAGVQAGRAGGFGAVIGVDRLDQAAALREHGADVVVTDLADLLERS
>AP018920.1|BBG02299.1|3694853_3696569_-|hypothetical-protein
MPDLVPPMLPATGELADATDPARWAVEFGWEGHRCVAYVRRGRVRLLSSTARSVTGSFPELAVLAEQAPPGGLVLDGTVVALDEAGRPSRGPLLRRTATLTPDAALRAEVPIGYVVTDLLWCDGRRVLELPYRRRRAELEKLALAGPAILVPPSFGLDEAELVVRTAEQYGLDGLHLKRLDVPYQPGRRTRNWLRVPLRRRRQVLLAGWVPAPGRPDRIAAVLLALPGPEGPRYVGRVGIGAADADARTILAAPSGPPPSAVPDGVAEHARWLAPGLAAAVEHRGRTAAGRLALPSWRGLVPDDERDDDLLDMPAAGGSQGGGPVSPDPVRDTGTRARDEARSRPRADAGAEARSRADAEPRSRAGADVHSRADAGARSRTGTDARSGAGPAGTDAAPVPAAGPEQPGTWHGPLSRRLEQHFVYNTLNTIASLVRTDPPRARELLLGFADLSRAADRAEEPTIRLDEELAAVRAYLQIEGTRFGARLSAEIDDPAAAGVDPGAAVPPLSVLAAVRRGVQEEIEPVPGGGAVHVRLVTDPGGPSCRIEIRPADAVRDPFVLFSVPLDVPEGL
>AP018920.1|BBG02300.1|3696690_3699270_+|helicase
MTLTDRLPRTSGPDNPIDPADLVEIFADWAFDERGLSLYPAQEESLLELVTGANVILSTPTGSGKSLVAMGAHAAALARGERTFYTAPIKALVSEKFFALCEVFGADKVGMLTGDAAVNEKAPIICCTAEILANLALRTGSGADVGSVVMDEFHFYADPSRGWAWQVPIVELPQAQFLLMSATLGDTSFFAGDLTRRTGRETAEITSVDRPVPLHFRYVVEPLHETITELLGTKEAPVYIVHFTQQAAVERAQALMSVNVTSKEDKAAIAETIGAFRFTSGFGRTLSRLVRHGIGVHHAGMLPRYRRLVETLAQAGLLKVICGTDTLGVGINVPIRTVLFTALSKYDGRRVRPLKAREFHQIAGRAGRAGYDTVGTVVAQAPEHDIENAKALAKAGDDPKKRRKIQRKQPPEGFVGWSQTSFEKLQQASPEALTSHFEVTHAMLLNVVSRGGDTYAAMRHLLTDNHEPRRRQLKHMLRAIAIYRALRSAGVVEEYRVEGAERPRVRIVDELQLDFALNQPLSPFALAVFELLDQESPDYALDVLSVVESTLDDPRQILAAQQNKARGEAIAAMKADGIEYEERMARLEEVTHPKPLDEMLHAALATYRGGAPWVADAVLSPKSVVRDMSERAMTFTEYVSHYQLARSEGLVLRYLADAYRALRQTVPEHARTEELTDLIEWLGELVRQTDSSLLDEWEKLAAGADTDGAGGEVTPPGADVGLAAPSGVTGNARAFRVLVRNAMFRRVELAALSRLDELGALDADAGWTAARWREALAPYFEIHDRIGFGPQARGPELFDLTEEADRWLVRQVLDDPAGDRDWAITAEIDLAASDEAGEAVVWVTAVTDGSPTEALDPQA
>AP018920.1|BBG02301.1|3699361_3701512_+|GGDEF-domain-containing-protein
MQQADVAAACADHGRALAAEALPAPSELVSAWTATLARRCAQPAAELRPLLERLTDRMRAAATGESLDPAEVVGVGRELIQARITDPACLEASLTVLGGHLEPGADTGARVRRLAAVQASFVRGFTDALRLQVLADQEQVTRAALEAREVAERARWASETRFSAMFDSAAVGIVIFDPRGRSIEANDAAAAMLGYSREQLTGMSVADFVSVEHAPELWAERPRLLDGSLDRLRVVRPVRRADDVEIWIDAVVTPLHEDDGSTDYLVAVLSDVTEQRELQRRLEHQASHDPLTGLPNRSLFFGRLAAAIAGSGIDGPRPGICYLDLDGFKVVNDTLGHQAGDRLLTVLADRLRAALEPEGYLVARMGGDEFVVLVPRTTDRADLEEIAGRALGTVRRPVRIDGRDIVISASVGVVRHDGELDADELLQAADTTLYSAKRAGRGRYVLYDRERHRSDVRRFELSSQMPEALRRDDFVVVYQPLVRLADEQTVGVEALVRWQRPDGELLGPDRFIPLAEETGLVVPLGRRVLDEACRQGRTWADQHPDRPLLVSVNVAARQIVESDLVADVAATLERHDWPAERLQIELTESDLMGSPGGPPATLRELERMGVRIAIDDFGTGYSNLAYLRHLPVHVLKLAGHFVAGSAERDDVILRTLISLASALDLEVTAEAVETREQAMRLREYGCANAQGWYYAPAVVPERVPELIRDPFLRDGG

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Crispr_ID: AP018920_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_13

3830593-3830681

Orphan

Consensus_repeat	Method
GTGCCGGGATCAGGCCGGGCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_13

>merge|AP018920|13|3830593-3830681|CRISPRCasFinder
GCGCCGGGATCGGTTCGTGCCGGGATCAGGCCGGGCCGGGATCAGCTCGCGCTGGGATCAGTGGGTGGCCGGGATCAGTCGGTGCCGGG

>AP018920|13|10|3830593-3830681|CRISPRCasFinder
GCGCCGGGATCGGTTCGTGCCGGG	ATCAGGCCGGGCCGGGATCAGCTCGCGCTGGGATCAGTGGG
TGGCCGGGATCAGTCGGTGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG02416.1\|3835878_3836646_+\|ubiquinone/menaquinone-biosynthesis-methyltransferase	unknown	unknown	gnl\|CDD\|225136
AP018920.1\|BBG02407.1\|3827921_3828845_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
AP018920.1\|BBG02420.1\|3840430_3841993_+\|monooxygenase-flavin-binding-family-protein	unknown	unknown	gnl\|CDD\|224983
AP018920.1\|BBG02408.1\|3828785_3830075_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
AP018920.1\|BBG02403.1\|3822259_3823786_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237001
AP018920.1\|BBG02404.1\|3823825_3824896_+\|leucine-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
AP018920.1\|BBG02409.1\|3830071_3830512_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
AP018920.1\|BBG02400.1\|3818877_3819717_-\|carbon-monoxide-dehydrogenase	unknown	unknown	gnl\|CDD\|366378
AP018920.1\|BBG02401.1\|3820162_3821224_+\|pyruvate-dehydrogenase-E1-component-alpha-subunit	unknown	unknown	gnl\|CDD\|213783
AP018920.1\|BBG02402.1\|3821291_3822263_+\|2-oxoisovalerate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
AP018920.1\|BBG02412.1\|3832010_3832442_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226720
AP018920.1\|BBG02418.1\|3838260_3839274_+\|(2Fe-2S)-ferredoxin	unknown	unknown	gnl\|CDD\|334028
AP018920.1\|BBG02414.1\|3833852_3834248_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG02411.1\|3831283_3831763_+\|tRNA-specific-adenosine-deaminase	unknown	unknown	gnl\|CDD\|238612
AP018920.1\|BBG02415.1\|3834580_3835792_+\|polyprenyl-synthetase	unknown	unknown	gnl\|CDD\|173833
AP018920.1\|BBG02406.1\|3827310_3827835_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368218
AP018920.1\|BBG02413.1\|3832601_3833705_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376263
AP018920.1\|BBG02417.1\|3836642_3838238_+\|isorenieratene-synthase	unknown	unknown	gnl\|CDD\|225885
AP018920.1\|BBG02419.1\|3839281_3840292_-\|HTH-type-transcriptional-regulator-VirS	unknown	unknown	gnl\|CDD\|378890
AP018920.1\|BBG02405.1\|3824953_3827248_-\|biotin-sulfoxide-reductase	unknown	unknown	gnl\|CDD\|239170

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG02416.1\|3835878_3836646_+\|ubiquinone/menaquinone-biosynthesis-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	6.54269e-34
AP018920.1\|BBG02407.1\|3827921_3828845_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.79831e-35
AP018920.1\|BBG02420.1\|3840430_3841993_+\|monooxygenase-flavin-binding-family-protein	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	9.1036e-128
AP018920.1\|BBG02408.1\|3828785_3830075_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1337e-75
AP018920.1\|BBG02403.1\|3822259_3823786_+\|hypothetical-protein	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	2.07168e-98
AP018920.1\|BBG02404.1\|3823825_3824896_+\|leucine-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	6.44103e-63
AP018920.1\|BBG02409.1\|3830071_3830512_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.88304e-13
AP018920.1\|BBG02400.1\|3818877_3819717_-\|carbon-monoxide-dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	9.67632e-51
AP018920.1\|BBG02401.1\|3820162_3821224_+\|pyruvate-dehydrogenase-E1-component-alpha-subunit	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	3.567e-137
AP018920.1\|BBG02402.1\|3821291_3822263_+\|2-oxoisovalerate-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	5.41495e-155
AP018920.1\|BBG02412.1\|3832010_3832442_+\|membrane-protein	gnl\|CDD\|226720	COG4270, COG4270, Predicted membrane protein [Function unknown].	1.72589e-09
AP018920.1\|BBG02418.1\|3838260_3839274_+\|(2Fe-2S)-ferredoxin	gnl\|CDD\|334028	pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilizes the protein.	7.51518e-14
AP018920.1\|BBG02411.1\|3831283_3831763_+\|tRNA-specific-adenosine-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	5.29734e-31
AP018920.1\|BBG02415.1\|3834580_3835792_+\|polyprenyl-synthetase	gnl\|CDD\|173833	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, protecting and stabilizing reactive carbocation intermediates. Farnesyl diphosphate synthases produce the precursors of steroids, cholesterol, sesquiterpenes, farnsylated proteins, heme, and vitamin K12; and geranylgeranyl diphosphate and longer chain synthases produce the precursors of carotenoids, retinoids, diterpenes, geranylgeranylated chlorophylls, ubiquinone, and archaeal ether linked lipids. Isoprenyl diphosphate synthases are widely distributed among archaea, bacteria, and eukareya.	2.21948e-58
AP018920.1\|BBG02406.1\|3827310_3827835_+\|hypothetical-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.34683e-10
AP018920.1\|BBG02413.1\|3832601_3833705_-\|hypothetical-protein	gnl\|CDD\|376263	pfam18844, baeRF_family2, Bacterial archaeo-eukaryotic release factor family 2. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome. This family contains a well-conserved 'FP' motif in the catalytic loop.	9.40146e-28
AP018920.1\|BBG02417.1\|3836642_3838238_+\|isorenieratene-synthase	gnl\|CDD\|225885	COG3349, COG3349, Uncharacterized conserved protein [Function unknown].	3.38926e-32
AP018920.1\|BBG02419.1\|3839281_3840292_-\|HTH-type-transcriptional-regulator-VirS	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.87568e-36
AP018920.1\|BBG02405.1\|3824953_3827248_-\|biotin-sulfoxide-reductase	gnl\|CDD\|239170	cd02769, MopB_DMSOR-BSOR-TMAOR, The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0

>AP018920.1|BBG02409.1|3830071_3830512_-|MarR-family-transcriptional-regulator
MSGLDPDELVRLRVVLARITRGLDRHSRGSDLTRTQVSVLGTVVVRGPIGMGELAGLEGLNPTMLSRLAGKMEAAGLLVRDTDPADGRAVRVAATEAGIAEHTRQREERARLLAEHVDGLPDGHAEGLRAALPALEALAGSLRASR
>AP018920.1|BBG02408.1|3828785_3830075_-|MFS-transporter
MSARTALRSYSARTFSSLSGRNYRLWFGGQSISMIGTWMQSIAQSWLVYELTGSAAVLGTVVAVQTLPTLLVGPYAGVWVDRLDRRRLMIGLQTLMGLQALALAVLTLTGTVVLWHVYLLAAVLGLNKAFENPARQVFVHELVGPDDLRNAVTLNSVLVNAARAIGPAVAGLVIVAGGTGVCFAVNAASFVAVVASLLRLDVSALTPSEPTPRAPGQLRAGLAYVRRSPELSVPLVMMALVGCLAYEFPVVLPVVASETFGGDAGTYGYLTGAMGAGAVVGGLIVAGRGRTGLPALVRTSLLFGLSMALVAVAPTLWVALVAMGLVGMSSVAFMAGGNSTLQLASDSHMRGRVMALWSVAFLGSTPIGGPIAGWVSEQFGGRGGLALGALACVGAAAIGWAASRRADRRGSADPATGGDAEEVPRGSLR
>AP018920.1|BBG02407.1|3827921_3828845_+|LysR-family-transcriptional-regulator
MAAPVHVPDLTGLALLVAIARTGNLGTAAHELGLSVQAATARVRSVEQLVGTPVLERGRRGRRSSRLTPRGVLLVEWAGPVLDAAHDLDAAVATLRPPDDGTDAVVLAAGPTAAESLLPGWLVELRDGPGGRITLLDTADPAAAVRDGDAVVGIVETGGPLDGLHATTVASDTLVLVVPPGHPLAGGPGIDGAGLAGTPLVSRRPEAGSRPVLDAALRDAAGDSPVAAPIRELAADAAVRAAVRGGDGPAVLPRMVVAADIATGLLLEVPVHGVELTREFRAVWQQGTSPQGTARDLLRIATGGRIR
>AP018920.1|BBG02406.1|3827310_3827835_+|hypothetical-protein
MTNTLTAADLLTDHFGRVDELVHEIVDGLTEDDLARRPDGADGAANPIGWLVWHLLRVQDDHLAEAFGTGQVWIDEGWVERFGLALDPHETGYQHTREQVDAVRTSAELLSGYGAAVHARTVSHMVSITEADLARVLPPTYGEGVTLGARLVSVLGDDLQHAGQAAYLRGLFGR
>AP018920.1|BBG02405.1|3824953_3827248_-|biotin-sulfoxide-reductase
MTEIEKTHSAHWGVFRARYDGDRLRVRPHPGDPDPSPVLDNIPAAVAHPARVGAPAVRRGWWERGPGRDPARGRDDYLTVSWDAVLDRLAEETHRVRTTHGDAAVYGGSYGWASAGRFHHAQGQLHRFLAVTGGYTRSVNTYSGGAAEVILPQVLGAFDSVSRNAVTWDAVAAHTDTVLAFGGMALKNSAIAAGGVSRHVERGAMRAARDRGAVFVLVSPLRPDLPEEVDATWLPIRPGTDVALMLALMHTVTAENRHDGDFLDTHCDGWEQLREYLFAAPVKDADWAAEITGIDASAIRELAWRIAYGRTLVTVAQSLQRAEHGEQPVWGATALAAVLGQIGLPGGGFNYGLGSLGHYGRLRNAVPVPTFSRVPNPVSSFIPVARVADMLLHPGETYDYNGAEHTYPHVRMAWWAGGNPFHHHQDLRRLRRAVAELDTFVVHDPMWTATARHADVVLPSTTTLERDDMGATSSDPLLVAMKQLVPPRGEARDDYDVLAALAHRLGHGDRFTEGRTSHEWLVHMYDRTRKALADRGLDAPDFDEFWERGELELPQRPDDGGVLGRFRADPAAHPLPTPSGRIQVGSAPIAGYRYSDHPGHPAWLEPTEAPDERHPFWLVSNQPATRLHSQLDFGAHSSGSKRSGREVVRIHPDDAAGLGISDGDVVRLHNDRGACLASARVTEDIRPGVLQLPTGAWWDPRPDPERPDAGDDALCVHGNPNALTRDHGTSRLAQGCTGQLCAVAVAPYPHEPPEVTAHTPPPLG
>AP018920.1|BBG02404.1|3823825_3824896_+|leucine-dehydrogenase
MTVLIDRRTPGAPTALTTFAEQEFEQLLVSRDPAGGPRGFIAVHDTSLGPALGGVRVRRYPDDETAAADALRLARAMTYKAALAGLPLGGGKSVINADPRTEKTAALLAAHGRAIGLLGGRYIPAADMGTGPEDLRVIAQHTPVVASAERDPSPSTAAGVVTAMRAVAARRGHHSLAGLSVAVQGVGNVGRHIVELLRAEGARTLVDDLDPARVRDAVTRLGALPADGTDVLLADVDLVCPAAAGLVLDAERVDRLRAWAVVPAANNALAGDEQALRLRERGIDYVPDFVANAGGLISCEAEIRGVAEFGDRLAVIGRTTAEILAAADADGVDSLTAATALADRRLAAARDRTARA
>AP018920.1|BBG02403.1|3822259_3823786_+|hypothetical-protein
MSTSTTHTGTEFRLPDVGEGLTEAEIVTWRVGPGDIVGVNDPLADIETAKSLVELSSPHAGTVAELCAAEGETIAVGAVLLRFAGADGPGSPEPALAPATPDATADASAPATATATATALDDPAEPAEQPAVLVGPGPRAEPSRRRRRIRDAAAAGASGDAPAARAPALARGATTVPDPEPAAPVPAGPETVGPASAGRTSVEPAAAGPASMGPGPQPARNGTAPPPAAPAVRRLARELGIPLASVAATGPGGRVLREDVLGHFTAGLALGPATPDGELRTPIRGVRKATADAVTRSAFTAPHVTEFLDVDVTGTVELVARLRDDPRLAGSRVTPLLVVARAVLAAVRAHPEINARWSAETAEIVQHAAVNLGIAAATDRGLIVPNIAAADRLDLPGLARALDALVATARSGRTPVADLTGGTLTVTNIGVFGVDAATPILNPGEAAILCLGAFRRRPWVVGDDVVPRWTTRLSLSFDHRLVDGELASRVLARIGAVLTDPTWELALT
>AP018920.1|BBG02402.1|3821291_3822263_+|2-oxoisovalerate-dehydrogenase-subunit-beta
MVRALNDALRSTLEDDPAVLVMGEDVGRLGGVFRVTDGLQKDFGEARVLDTPLAESGIVGTAIGLAMRGYRPVCEIQFDGFAYPAFNQIVSQLAKLHARTAGAVRLPVVIRIPAGGGIGAVEHHSESNEAYFAHTAGLRVVYCSTPQDAHWMLRQAVTGDDPVLFYEPKRRYWATGDVATDPADPSVLPLDRARVVRPGRDLTLLTYGGMVAVCLAAAEAAAEDGHDLEVVDLRTLSPLDLGTVLASVRRTRRAVVAHEAPTFLGLGAEIAAAVTEHCFFDLEAPVLRVGAFHAPYPPARLEDEYLPDLDRVLDAVDRTLDPA
>AP018920.1|BBG02401.1|3820162_3821224_+|pyruvate-dehydrogenase-E1-component-alpha-subunit
MSETPVQLLSPDGELTDHPDHPLDVDAPLVRDLLRRMVLARRLDEEALHLQRQGELGLWLQCRGQEAAQVGAVTALDDRDRIFPSYREHAAALCRGIPPAGLLSQWRGCSAAGWDPDEHRFGVYTLVLAAQLLHAVGYAMGVQRDGADEIVMACLGDGAASEGDASEALNWAATTSAPVLFLCQNNQFAISTPARLQQRAPLHQRARGFGVDAHLVDGNDVLAVHAVTATAAAAVRSGSGPVLVEALTYRMGGHSSSDDPSRYRDDAELAGWTARDPITRVERLLGRRGWTDTAFSDELRRESDELAAQVRADCLALAAPGIDSVFAHVLAGGSATVDAERSAHAAYAASFLD
>AP018920.1|BBG02400.1|3818877_3819717_-|carbon-monoxide-dehydrogenase
MRPAPFRYREPRSLDEACAVLAAEPGEVAVLAGGQSLVPQLNARTRTPQLVLAIGRVPELGGVTLDDDRLRIGAAVTQRAVQRDPLAARVPVLAEALGHVGHVPTRNRGTVGGSIAFADPAAELPLVLLGLGGSAVAHSASGERRIPAAELFTGPFRTSLRPDELLTAVELPVPAHPWVFEQRHFRRHAKVSVVAGHDAGGALVVAVTGVGETPVLVPVPDTGDVAAVAATAADLVVPNGDRYGSVTYRRRLVAVAVTAALSRIAPDPARHTPSREDAA
>AP018920.1|BBG02411.1|3831283_3831763_+|tRNA-specific-adenosine-deaminase
MDERDRTHLRRCVELAEQALLAGDEPFGSVLVDGSGTAVAEDRNRVSGGDPTQHPEFALARRSTELLTPAQRAAATVYTSGEHCPMCAAAHAWAGLGRIVYASSTAQLSTWRQELGAAPGPVRPLPVSDVAPGIRVEGPDPDLAPQVRLLHERFRRGSA
>AP018920.1|BBG02412.1|3832010_3832442_+|membrane-protein
MAWLRTVARLLLGAFLVTAGIAHLVVPGEFLAQVPPFLPAPGAIVLVSGLVEIALGAALLVAPARRRPVAGLAAAALFVIVFPGNVSQYLTGTAAFGLDTDAARATRLLFQPLFVLWALWSCGSWALLRPTRNGSTGRHRSRN
>AP018920.1|BBG02413.1|3832601_3833705_-|hypothetical-protein
MGMRTDWIRHLNDDDGPFATVVLDATHDTADATERYRLRWRDLRERLADDGADERTLSVLDDAVVDAPAPSGTAGRVLVAAPDGVLLDRHTEVPPERGTATWGPVPELLPVLAAVGEQVPTVVVAIDNTGGEIRAVDGTVETVGSDSSGPVHKANTAGPGEGGADARVEETWKRNAQAVAERVDKLVRGGNADLLVVAGDAPARARLRDELASASAEIMAEIENTGGTVPEQVDDTVRAAADEVRERRRSAAVAGYATASGRDGGLAVTGLGDVVAAARAHAVETLVIDPSSVPGTELLVGADPTAVAQKPDELLDDGPTTSAPAVGVLVRAVAGADAGIVLAAPGDDVTLVDGLGAVLRFPIGPAA
>AP018920.1|BBG02414.1|3833852_3834248_+|hypothetical-protein
MSTQNRHVAPDSASAAPVLALRVLAVASVAVITWQFVTAAGLFTGGAVGPHAAGSIVLHIVTGLTAGAAIWLRTRNGGPWWPSVVATVVFVLTFVQGYFGTIPGLIVHLPGAMALTAGSVWLAAWSFLRLR
>AP018920.1|BBG02415.1|3834580_3835792_+|polyprenyl-synthetase
MAVETGTTRQREHVVHVAPGAGWPEEIRRRVHAHVADIVRRRCAEHVHSVPGSEFVSGVLADFVGRGKYLRSMFGYLGWRAAAPDSPGALGAFAGLELLHAFALIQDDVMDGSQLRRGRPTVHVQLAGWHREQGMSGSADRFGESAAVLLGDLCLVWAEQAMRESGLPAEVLDRGWPRYDAMRSELAVGQFADLVNDARRVPDLDEVMDVLRRKSGNYTVRRPLELGAAMAGADEELLTLLGDYGTMIGEAFQMRDDVLGVFGTGATGKSAGDDLTERKATSLVVLARELAEPHTRARLDALLLGSDNGGSGGSGAENGDGGADSAREGGTDSAREGGGPVDVAAARALIESTGARRRIDELIGTRVQGALRLVDGAVADGRLGDDVAGVLRAMAVRCADRAS
>AP018920.1|BBG02416.1|3835878_3836646_+|ubiquinone/menaquinone-biosynthesis-methyltransferase
MAEHTDHSSTGTARTGTVGRAGLPRHEVPTHFDDGAGDYDRLVGMNPGYHEHLRASAARMRLPRDGAGLRLLDAGCGTGASTAALLAAAPRAEIVAVDASAGMLTRARSKPWPASVRFVHSTAEALADAGVHGPFDGILAAYLLRNLDDPDAQLRRFHDLLRPGGVLALHEYSVADSPRARAVWHAVCWGVIVPLGRLTTGETALYRHLWRSVNTFDGIGRLRDRLRTAGFDAVHSETMTGWQNGVVHTVLGTRR
>AP018920.1|BBG02417.1|3836642_3838238_+|isorenieratene-synthase
MSVAPVDPRRVVHPPADGHGDAGVLGRRPRVAVVGGGIAGLAAATGLAERGVVVEVLEREPYLGGRVGAWSDRLPDGTAVSMGRGFHAFFRQYYNLRALLRRADPGLRRLVALDDYPLIDAEGRRDTFRGLPRTPPWNAVLFALRSPTFRPRDLAGLDPRAAAPLAAVSVPGIYEALDHVDAQSFLESINFPPAARHLAFEVFSRSFFAPPSTMSAAELATMFHIYFLGSSEGLMFDVPDDGFDTALWEPLRHYLIARGVSFRTGTLASSVQRDVGSGRFHVNHSSGGTEVDAVVLATDVPGLREIVAASDLGSVDPLPAGPDALPAWRDDIAALGSAPPFLVYRLWLDRPVRADRPPFLGTGGLDPLDNISVLDRYEHDAASWAARTGGSVVELHAYSATVPTGFDEASWTADLRSRCLARLHAIYPETAGARAVGELVQWRRDCPMFGLGDFARRPGVVTPVDGLVLAGDGIRVDLPVALMERAASTGWLAANRLLAGWGLAGHPLETVPTRGRFGPLRRAAEYAMRSR
>AP018920.1|BBG02418.1|3838260_3839274_+|(2Fe-2S)-ferredoxin
MSLMSRISRRWPAGWPLQPLPPSDWARQQPTYAGADPKLISAALERAQARPSGNWFVLASSREVRADRPFGSRIGGTELVAWRDTAGTVRVGPGACPHLGAPMALAAVDCGELVCRWHGLRLGPRSGPGWVPFPAHDDGVLVWVRLDEIGGEEPTDAPVVPARPAGRTLDAVTTLTGICEPEDIVANRLDPWHGAWFHPYSFQRLDVVSAPAVTDVTEADDRFLVTVTFKVGPRIGVPVQAEFVCPEPRTVVMRIVDGEGLGSVVETHATPRGPGRDGRPRTSVVEAVVAGSDRPGFAVASRLAPAIRPAMAAAATKLWRDDLDYAERRYEMRTRTS
>AP018920.1|BBG02419.1|3839281_3840292_-|HTH-type-transcriptional-regulator-VirS
MGTGSLTRARALRGLPELIGELGGDGPAMFARFRIPVAAVDGADPDALVPTRSVARVLETAAGELSCPDLGLRLAERQGPEILGPLAVAVQNSATLGAALECASRYLYVHSPVLTVGSVPDPEDAPGVTGLEYGSTDPMPPQVADLGVGVLHRIVRLLAGGAYGLRSVHLPHPRLTAPERYRAFFDAEVRFDRPAAVLRVPADLVRRPLAGGDETVRAIAIDYLETHFDRPGRTVADRVRTAVDRSLGSGPVRVGSVARLLRVHPRTLQRHLAAEDTTFERIVDEARRDLAERLITRTDLPFSQVAGMVGLAEQSALTRSSRRWFGSPPRELRRQA
>AP018920.1|BBG02420.1|3840430_3841993_+|monooxygenase-flavin-binding-family-protein
MTSGTQPSNPDRTEHRDVIIVGAGLSGIGAACRLQQELPGKDYAILEGRENLGGTWDLFRYPGIRSDSDMFTLAYPFRPWREPKSIADGADIRRYIGETADQFGVRDRIRFGTKVVGASWDSSTARWTVDTETADGPRRYTCGFLFMCSGYYDYDQGYQPEFPGREDFAGTWVHPQFWPEDLDCTGKRVVVIGSGATAVTLIPSLSAQAEHVTMLQRSPSYLTVLPSHDPVADRLRRFLPAKLAHTILRYQYVALTQSFYQLARRRPERVKKVLRGLAMRFLKDEAYVDQHFTPSYEPWDQRLCVVPEGDFFRSIRSGDASVVTDHIDRITETGIRLRSGEELPADVIVSATGLSLKPLGGMTIRVDGEQVDIGKTVTYRGLMLSGVPNLAFCIGYVNASWTLRADLVARYVPRLLAHMDRRRIAVATPAPTVSPDRPLLDLASGYVKRSEHLFPRQGRKDPWRLRQNFFLDAIGLGRADLEKDMLLTPVSAVGQRSAAVTTPSEAGIAADTPTVKELAS

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Crispr_ID: AP018920_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_14

3862861-3862951

Orphan

Consensus_repeat	Method
GCGGTGGGGCTCCGAGCCGGGTGATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018920_14

>merge|AP018920|14|3862861-3862951|CRISPRCasFinder
GCGGTGGGGCTCCGAGCCGGGTGATCAGCGCGCACCTCGGGATCGCCGCCCGGCCCCCGAGCCCGCGGTGGGGCTCCGAGCCGGGTGATCA

>AP018920|14|11|3862861-3862951|CRISPRCasFinder
GCGGTGGGGCTCCGAGCCGGGTGATCA	GCGCGCACCTCGGGATCGCCGCCCGGCCCCCGAGCCC
GCGGTGGGGCTCCGAGCCGGGTGATCA

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG02453.1\|3869658_3870720_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|226361
AP018920.1\|BBG02454.1\|3870716_3872408_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
AP018920.1\|BBG02447.1\|3864051_3864837_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
AP018920.1\|BBG02448.1\|3864985_3865816_+\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|163190
AP018920.1\|BBG02436.1\|3855242_3855827_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224609
AP018920.1\|BBG02444.1\|3861372_3862095_+\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
AP018920.1\|BBG02452.1\|3868635_3869583_+\|stearoyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
AP018920.1\|BBG02446.1\|3863042_3863927_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238509
AP018920.1\|BBG02449.1\|3865964_3866399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366782
AP018920.1\|BBG02443.1\|3860672_3861383_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
AP018920.1\|BBG02437.1\|3855914_3856790_+\|protein-deglycase-HchA	unknown	unknown	gnl\|CDD\|235228
AP018920.1\|BBG02441.1\|3858613_3858958_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|376370
AP018920.1\|BBG02438.1\|3856851_3857790_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|179580
AP018920.1\|BBG02435.1\|3854918_3855122_-\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG02440.1\|3858314_3858617_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|376347
AP018920.1\|BBG02442.1\|3858954_3860673_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
AP018920.1\|BBG02450.1\|3866906_3867809_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	unknown	unknown	gnl\|CDD\|225311
AP018920.1\|BBG02451.1\|3867934_3868639_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
AP018920.1\|BBG02455.1\|3872410_3873418_-\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270261
AP018920.1\|BBG02439.1\|3857862_3858153_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG02453.1\|3869658_3870720_-\|ABC-transporter	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.18645e-108
AP018920.1\|BBG02438.1\|3856851_3857790_-\|membrane-protein-insertase-YidC	gnl\|CDD\|179580	PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional.	2.65895e-92
AP018920.1\|BBG02455.1\|3872410_3873418_-\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270261	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic protein (Fbp) has high affinities for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.33085e-128
AP018920.1\|BBG02447.1\|3864051_3864837_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.93749e-68
AP018920.1\|BBG02436.1\|3855242_3855827_+\|hypothetical-protein	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.40552e-06
AP018920.1\|BBG02444.1\|3861372_3862095_+\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	1.47354e-102
AP018920.1\|BBG02452.1\|3868635_3869583_+\|stearoyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	1.13573e-67
AP018920.1\|BBG02446.1\|3863042_3863927_-\|hypothetical-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	2.76714e-08
AP018920.1\|BBG02449.1\|3865964_3866399_-\|hypothetical-protein	gnl\|CDD\|366782	pfam01740, STAS, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	9.84944e-05
AP018920.1\|BBG02443.1\|3860672_3861383_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	1.50143e-26
AP018920.1\|BBG02437.1\|3855914_3856790_+\|protein-deglycase-HchA	gnl\|CDD\|235228	PRK04155, PRK04155, protein deglycase HchA.	2.0482e-159
AP018920.1\|BBG02441.1\|3858613_3858958_+\|urease-subunit-beta	gnl\|CDD\|376370	pfam00699, Urease_beta, Urease beta subunit. This subunit is known as alpha in Heliobacter.	1.38659e-56
AP018920.1\|BBG02448.1\|3864985_3865816_+\|hydroxypyruvate-isomerase	gnl\|CDD\|163190	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.	1.30986e-80
AP018920.1\|BBG02454.1\|3870716_3872408_-\|ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.06641e-75
AP018920.1\|BBG02440.1\|3858314_3858617_+\|urease-subunit-gamma	gnl\|CDD\|376347	pfam00547, Urease_gamma, Urease, gamma subunit. Urease is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia.	7.84202e-62
AP018920.1\|BBG02442.1\|3858954_3860673_+\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
AP018920.1\|BBG02451.1\|3867934_3868639_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.90405e-45
AP018920.1\|BBG02450.1\|3866906_3867809_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	1.29575e-94

>AP018920.1|BBG02444.1|3861372_3862095_+|urease-accessory-protein-UreG
MPPERSGTQTGHGHGHLISFDPTVTDHDHHAPAPPSGRAVRIGIGGPVGSGKTALVAALARSLAGRVRLAVVTNDIYTTEDADFLRRAGVLAPDRVEAVQTGCCPHTAIRDDITANLDAIDLLEERFGDLDLVLVESGGDNLTAVFSRGLVDRQIFVVDVAGGDKVPRKGGPGVTTADLLVINKTDLAPLVGADLDVMRGDAARIRGELPVIAQSLVVDPGAGEVGAWVLEQVAAVRAAV
>AP018920.1|BBG02443.1|3860672_3861383_+|urease-accessory-protein-UreF
MAGLASLVLADARFPGGGHVHSGGLEEAVARDLVSDVPSLGAFLRGRLRTAGRVAAAFAAAAVTLAQAPGAGPGRAPAGVAWDVLDAALDARTPSAAQRDASRAQGKASLRAARAAWPSPLLDTLVAVHPRPHHPLLLGAVIGHAGESPAAAARCAGYLAVSGPASAAVRLLGLDPFAVNSALVALDAELDAIVHEAAALAAGPVDELPAPGAPVLDLMAESHVRHHRERVRLFAS
>AP018920.1|BBG02442.1|3858954_3860673_+|urease-subunit-alpha
MTGIDRARYADLYGPTTSDRIRLADTNLLIEVTEDRSRGPASGDEVMFGGGKVIRESMGQAAVPAARCPDLVITGAVVLDHWGVVKADVGVSDGRIVGIGKAGNPDTMDGVDPALVIGPGTEVLSGNGKILTAGGIDAHVHFICPQLVETALASGVTTLMGGGTGPVDGSKATTVTPGPWNIGRMLSAMDHQPVNVLLMGKGNTTSAEALHEQLRAGAGGFKLHEDWGTTPAAIDACLRVCEETGVQAAIHTDTLNEAGFLQSTLDAIAGRSINAFHTEGAGGGHAPDIIEVVSTPHVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPSVPEDLAFAESRIRPTTIAAEDVLHDLGAISMMSSDSQAMGRIGEVIIRTWQTAHVMKAARGPLPGDSERADNARAQRYVAKYTINPALAHGAADQIGSVEIGKLADLVLWEPKFFGVRPAVVLKGGFAVWAQMGDANASIPTPGPVYGRPMFGYAHTPAALGSLVFMAPSALADGAPERLGLATPCVPVADTRSVRKSSMLHNDATPAVRVDPDSFQVTIDAAVVEPAPVDELPMAQRYFLF
>AP018920.1|BBG02441.1|3858613_3858958_+|urease-subunit-beta
MSGTAAGGPGEILLGDEPVALNPGRERSTLVVVNAADRPVQVGSHYHFAAANPGLEFDRDAAWGLRLDIPAGTSVRFEPGVEREVTLVPLQGTRRVPGLRPERAGALDERRYDR
>AP018920.1|BBG02440.1|3858314_3858617_+|urease-subunit-gamma
MHLSPQERDKLLVHVAADVARRRRDRGLRLNHPEAVALITEHVLEGARDGRAVHELMSSGREVLGRADVLDGVPEMLDSVQVEATFPDGTKLVTVHGPIA
>AP018920.1|BBG02439.1|3857862_3858153_-|hypothetical-protein
MLAALFVLVAVLAPALFPPDGDAGLFGAVVALVVLAWAGRGHPGTVRTVLTAATTPVREARRVAHRAGVLRQRDPDADGRPRPRAPGALRPEPATG
>AP018920.1|BBG02438.1|3856851_3857790_-|membrane-protein-insertase-YidC
MLDVLYYPVSLVMRLWHDLFASLLGPASGLAWALSVVFLVLTVRALLLRPTWTRMRAARIGRALTPQLTELRERHRGDPRALAEATTQLHRRHGSSPVAGLGTALLQIPVFVALLHVLRSFNRPGLSFEQNAAIANYAFGPEQVASFLQARLFGAPLSAWMTMPAEQLASFGGAVVGSGAVAAVVVPLAVLAAVATHLSMRFARTDVTGQPSGVAQAMAMLPWVAPIGVLAGGLLFPVPVALLLYWATGGVATLVVQVVLGRMLDRRPPPVLEPVAAAPAVRAPRPGAKPVGRSTGRGGGRRGRRTGRGHGR
>AP018920.1|BBG02437.1|3855914_3856790_+|protein-deglycase-HchA
MTEALSRTPTPDVAEDNAFFPSPYSLDAYTARRTDFDGLATERDAYRGGRWKVLVIATGERYLLMGNGTMFSTGNHPVETLLPLYHVLEAGFDVEIATLTGEPAKFEWWAYPAEDEAVRAARDTLIEKWRSPKSLADVVANELGDDSDYLAVFVPGGHGALSGLPSSTDVRDTLEWAMAADRLVVSLCHGPAAFLAADIGRERSVFAGYEMCVFPDALDAGQNIDIGYLPGEMPWLLAEALAKSGVRVVNDDMSGACTTDRNVITGDSPLAANELGRRTAVALVERAAALG
>AP018920.1|BBG02436.1|3855242_3855827_+|hypothetical-protein
MLGMLAVQPWSSYELTTQIRRSLARFWPRAASKLYEEPRKLVALGLATAQPRLHGRRRRTVYTITPEGRRVLARWLAEPAVPPVLESEQLLKVFLADHGERTDLLATIASTRAWAREMAALDGEIAEGYLRHEAPFPQRAALNTLVGRYLSDISEATEQWADWATAVVESWPEDTTAAGPDEDALRVVSARARR
>AP018920.1|BBG02435.1|3854918_3855122_-|hypothetical-protein
MGGDDEGGGGAFGLAALLLVVLIAGAALLLTTSPSRSDPGQAPVPAEAGCEDGSPGSLFGLVCPDGH
>AP018920.1|BBG02446.1|3863042_3863927_-|hypothetical-protein
MRLAELLTEQAGVLSRAQALGCGVGARTVARRRETGAWIELFPGVYLVSGHRLSPEARLRAVALWAGHRCTVHGPAAAFWHGLLPGLPATVAVTVPRALRRRARPGVRLRHKDLADADRVVVRQLIVTSVALTVLETAAGLEQGAAFLDRALQRHVSPAQLQAAHHRALGGHGMGRAGRLLLGAMDRADSAAERRLTALLRRAGVSGMVRGMAFGRWTVDLAFPEAHVAIEVDGWAWHVDTERFRNDRRKQNALVAAGWTVLRFTWSDIHESPGRTVAAIRDAVHRGRRSPSGP
>AP018920.1|BBG02447.1|3864051_3864837_-|IclR-family-transcriptional-regulator
MRNSDTGDDDAGGSAAPVRSGTVQSVERAVDLLEAMADAGGTVSLSHLAASSGLPLPTIHRLVRTLAGRGYVRQQSSREYALGPRLVRLGDAAGRLVGVWARPRLAELVDALGESANLALLEGNQVVYVAQEPGRHSMRMFTEVGRRVSPHCTAVGKAMLARMAPDRVREIMRHTEMVSHTDNTITDRDTFDAELDKVRAAGYALDEGEQELGVRCVAVALNGPLPAAISISGPTTRMTDTLLESAVPLLQAAADRVARDT
>AP018920.1|BBG02448.1|3864985_3865816_+|hydroxypyruvate-isomerase
MPSIPPTTQPIAQPITLPLPLTANCSILFPDLPITARPAAAAAAGFDAVEFWWPFERSVPGDAEIDGFVTAVSDAGVVLSGLNFTGGDMAAGERGILSDPARRAEFADNVDVAVGIGERLGATGFNALYGNRLDGLDPAAQDEAAAENLALAGRAAARIGAVALLEPISGIDRYPLRTAADAVAVLDRTGSDDVRLLLDVFHLAVNGDDPAAAIDQHADRIGHVQIADAPGRGEPGTGTLPIAALVDRVVAAGYRGRISLEYRPVTADPFGWLTVR
>AP018920.1|BBG02449.1|3865964_3866399_-|hypothetical-protein
MRNDPATGLAVEPAAPGVRLVRVTGRLDRRGAEAIARMIDAQRACGTGPVDVVLDLGGVSEFDGPATEALGGVATRSPDGGVRVHLAGCGGRAELLPLRARQVLLRCSAYPSAEAAVRAIAAVGRVPRPRESIAGVRPTGRATT
>AP018920.1|BBG02450.1|3866906_3867809_-|carboxyvinyl-carboxyphosphonate-phosphorylmutase
MGDLLSKPGDRRARLRALLDSGEPLLAPGAYDALSARLVEQAGFGAVYMTGFGSTAGLLGRPDVGLLGGAEMAAHAARLADAVDLPLIADADTGYGNPVNVIRTVRDYERAGVAALHMEDQVMPKRCGHMSGKQVVPAGEMAAKIRAAVDARSDPDLLIIARTDAAAVDGLDAAVDRAKRFADAGADLLFVEAPTSEAHIEQVASALQGHKLVFNWAEGGRTPPLSLERLAELGFALVLFPIGTLLAATAAMGEFLRVLRADGTPAAMLDRLGGVDPFAELVGLGEIRELEERYRDQGTA
>AP018920.1|BBG02451.1|3867934_3868639_+|GntR-family-transcriptional-regulator
MSEATPRRASERAQTALREQILSGDLPGGTRLGEVELAERLGLSRTPVREALSRLAAEGLVELHAHRGARVTEFTETDLEDIFDVRRALEPRATERAAGRASTADLDELDALAQEMLAIGSPGPGQDLDRLVELNQRFHARLLEIAAAPTLTAALAGVVHAPVVLRTFHSYDAASLARSLAHHVEIVAALRAGDGGWAAAVMVSHLANARAVMTAARGVLPTAPSGVNRNDGCS
>AP018920.1|BBG02452.1|3868635_3869583_+|stearoyl-CoA-desaturase
MTETRPAAPRDLSDRLRHPVPHLFVYAFAIVPAIALVAAVPLAWGWGLTWLDAGLALGMYVVSMLGVTVGFHRYFTHGSFKANRPLRIALAIAGSLAVQGPVRHWVADHRRHHAYADVEGDPHSPWRYGTSPAALVRGFWHAHMGWIFDRSLTDQRRFTPDLLDDPDIDRVHRAFSALTVVSLLGPALIGGLVTWSWWGALTAFFWAGLVRVAVSHHVAWSTNSICHLVGERPWRARDRSTNVWILAIPSMGESWHNLHHADPTSARHGVGRWEIDISAGTIRLFELLGWAHDVRWPTAKRLAKLAARPEQAPAT
>AP018920.1|BBG02453.1|3869658_3870720_-|ABC-transporter
MTLTVRGIVAGYGGDPVLHGVDLDVRAGELVSVLGASGSGKTTLLRVAAGLHRPDAGRVLVGGVDVTGVAPERRRVGLVPQEGALFAHLDVRGNVGFGLAPTGLARLRPDRAARAVARDRVAELLDLVGLAGKADRMPHQLSGGERRRVALARALAPRPEVVLLDEPFSALDAGLREQVRGDAVAALRIAGSTAVLITHDRREALSVSDRVAVLHDGLLEQTAEPRELYATPATARVAGFVGDAALLPGTATGDRVRTALGSAPLRPGSAPAGEVLAVLRPEQLRLTPQTGPGDVGALAAVEQVEFLGEALLVTARPEGGPAVRVRAAAGEGWRTGDVCRVHTDGPVHVVPVR
>AP018920.1|BBG02454.1|3870716_3872408_-|ABC-transporter-permease
MLHRTDRAERTGTAGRRAPHQGPPERSVPAGPPVRSRPPRLLVAAALVVAALAALPLVWLLVRVAGADPDRVLALLVRSRTVTLAVNSALLVTFVSAGCLVLGLLTATLLARVRLPRPGLWWVLAALPLAVPSYLLAFAVLAVRPESRGLVPLVAVLVLACTPYVTLPAAAALRAADTGPEDAARTLGRGPVAAFCRVTLPQALPAAFAGTLLAALYTLSDFGAPALLRYESFTWAVQAAYEGTIDRTGAAVTALVLAALTLLLVVAERTARRRWTRAGATTAVHRIPPARLGRGGTAFAVTGLGAVAAVTLLGPPVVLVGRIVAAGGVSVDWARLASAAWSTLLLAGSAAVLAVVMALPVGMLAARYRGRLVAAVESTAYLGQGLPGVVVGLSLVFFSLAVVPGLYQTAAVLVFGYAVLYLPKAVGATRASVERVPVEAEEVARTLGRSGPATWWAVTARQAWPGVAAGGLLVMVTAMKELPATLMLRPTGVDTLATQLWAQTSLGAYGAAAPAALALLLLACVPAALLVRAGTERPGDSSRRPGAADRRRSDDRVPMTGDR
>AP018920.1|BBG02455.1|3872410_3873418_-|iron-ABC-transporter-substrate-binding-protein
MLAGAFLTVSLLVAACGGGTPAEPAPAEDGQRSLTLYSGRDEDLIGPLIQQFQEQSGITVDTRYGSTTEMAAQLGEEGANTPAQVFLSQESGALGALADGGAFAPLPGDVTGAVPAEYTSTDGSWVGLTGRARVLAYNTRVPEAEVPADVKELTGPEWNGRVGIAPTNASFQAFVTAMRLVDGDDATRQWLTDIRDNDPQIFPRNTAILEAVDNGAVDVGLINHYYVAAAETTPANTALKFGAPGTASALVNVTGAAILAGAAESAEAQELVAFLVSQPAQEYFATETGEYPLIEGVAGPADMPALAEMGAPDVDLADLKDLDATTQLLTEVGLL

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Crispr_ID: AP018920_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018920_15

5163823-5163923

Orphan

Consensus_repeat	Method
GCCAACCGGCGAGACCGACCGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of AP018920_15

>merge|AP018920|15|5163823-5163923|CRISPRCasFinder
GCCGACCGGCGGGACCGACCGGCAGGGCCAACCGGCGAGACCGACCGGCAGAGCCGACCGGCGAGACCGACCGGCAGAGCCGACCGGCGAGACCGACCGGC

>AP018920|15|12|5163823-5163923|CRISPRCasFinder
GCCGACCGGCGGGACCGACCGGC	AGGGCCAACCGGCGAG
ACCGACCGGCAGAGCCGACCGGC	GAGACCGACCGGCAGA
GCCGACCGGCGAGACCGACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
AP018920.1\|BBG03666.1\|5156198_5156996_-\|molybdate-binding-protein	unknown	unknown	gnl\|CDD\|270256
AP018920.1\|BBG03680.1\|5169450_5170059_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
AP018920.1\|BBG03673.1\|5162960_5163434_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
AP018920.1\|BBG03679.1\|5168644_5169454_+\|putative-enoyl-CoA-hydratase/isomerase	unknown	unknown	gnl\|CDD\|236163
AP018920.1\|BBG03681.1\|5170304_5170622_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
AP018920.1\|BBG03674.1\|5163584_5163818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378655
AP018920.1\|BBG03671.1\|5161517_5162009_+\|alkyl-hydroperoxide-reductase-AhpD	unknown	unknown	gnl\|CDD\|225039
AP018920.1\|BBG03678.1\|5166462_5168493_-\|bifunctional-aldehyde-dehydrogenase/enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236931
AP018920.1\|BBG03665.1\|5155144_5156161_+\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|376764
AP018920.1\|BBG03668.1\|5159188_5160331_-\|membrane-protein	unknown	unknown	gnl\|CDD\|377704
AP018920.1\|BBG03682.1\|5170618_5171404_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
AP018920.1\|BBG03667.1\|5157836_5159195_+\|mycothione-reductase	unknown	unknown	gnl\|CDD\|181142
AP018920.1\|BBG03672.1\|5162005_5162977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224655
AP018920.1\|BBG03670.1\|5161185_5161521_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
AP018920.1\|BBG03676.1\|5164393_5165089_-\|DSBA-oxidoreductase	unknown	unknown	gnl\|CDD\|239322
AP018920.1\|BBG03675.1\|5163937_5164255_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379343
AP018920.1\|BBG03669.1\|5160496_5161141_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG03684.1\|5172580_5172799_+\|hypothetical-protein	unknown	unknown	unknown
AP018920.1\|BBG03683.1\|5171528_5172584_+\|vanillate-monooxygenase	unknown	unknown	gnl\|CDD\|239608
AP018920.1\|BBG03677.1\|5165140_5166466_-\|phenylacetate-coenzyme-A-ligase	unknown	unknown	gnl\|CDD\|131210

Protein	Function_ID	Function_description	E-value
AP018920.1\|BBG03666.1\|5156198_5156996_-\|molybdate-binding-protein	gnl\|CDD\|270256	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.26263e-81
AP018920.1\|BBG03680.1\|5169450_5170059_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	7.77846e-18
AP018920.1\|BBG03673.1\|5162960_5163434_-\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.50307e-18
AP018920.1\|BBG03683.1\|5171528_5172584_+\|vanillate-monooxygenase	gnl\|CDD\|239608	cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid).	3.52013e-46
AP018920.1\|BBG03681.1\|5170304_5170622_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00787176
AP018920.1\|BBG03674.1\|5163584_5163818_+\|hypothetical-protein	gnl\|CDD\|378655	pfam11387, DUF2795, Protein of unknown function (DUF2795). This family of proteins has no known function.	0.00100458
AP018920.1\|BBG03671.1\|5161517_5162009_+\|alkyl-hydroperoxide-reductase-AhpD	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.41848e-19
AP018920.1\|BBG03665.1\|5155144_5156161_+\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	9.82439e-96
AP018920.1\|BBG03668.1\|5159188_5160331_-\|membrane-protein	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	3.69687e-70
AP018920.1\|BBG03682.1\|5170618_5171404_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.34815e-54
AP018920.1\|BBG03667.1\|5157836_5159195_+\|mycothione-reductase	gnl\|CDD\|181142	PRK07846, PRK07846, mycothione reductase; Reviewed.	0
AP018920.1\|BBG03672.1\|5162005_5162977_+\|hypothetical-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	4.96974e-71
AP018920.1\|BBG03670.1\|5161185_5161521_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.64976e-25
AP018920.1\|BBG03678.1\|5166462_5168493_-\|bifunctional-aldehyde-dehydrogenase/enoyl-CoA-hydratase	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
AP018920.1\|BBG03676.1\|5164393_5165089_-\|DSBA-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	1.31294e-86
AP018920.1\|BBG03675.1\|5163937_5164255_-\|hypothetical-protein	gnl\|CDD\|379343	pfam13710, ACT_5, ACT domain. ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein.	0.00277379
AP018920.1\|BBG03679.1\|5168644_5169454_+\|putative-enoyl-CoA-hydratase/isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	9.08179e-69
AP018920.1\|BBG03677.1\|5165140_5166466_-\|phenylacetate-coenzyme-A-ligase	gnl\|CDD\|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0

>AP018920.1|BBG03674.1|5163584_5163818_+|hypothetical-protein
MTAAPLHPGSDDAEHLRYALRHVLAGLALPAQRWQILAHATDWGAPASLRQRLAALPEGTYRSYEAIVAAALAALRR
>AP018920.1|BBG03673.1|5162960_5163434_-|hypothetical-protein
MPEASEQARAVLAGVHAFAHGIDRYRLAVGTRFGLGVPEVVTLTHLAMAGPARAGEVAERTGLSQGSVTALVDRLERRGLVARLRPRDNRRIVLVELTGAGRELTDGLLAAVLPSMAATAAEPGLPEPADLAHGLHRVADMLVELADRDPAQVTPAG
>AP018920.1|BBG03672.1|5162005_5162977_+|hypothetical-protein
MSNVEAVPEEVVCGGGSARAELVTPREVPLGGPRAMTVRRTLPRRVRSLIGAWCFIDHYGPDRVSGTGGMAVPGHPHTGLQTVSWLFEGEIEHRDTTGAHAIIRPGELNLMTAGSGIAHSEYSTPDTETLHGVQLWLALPVAHRETAPGFAHHAPSPIRQDDATLRVFLGSLAGSTSPVQTFSPLLGAEVVLPAGGRLSVPATPSFEYGVLVDTGSADVCGTAAGSGELVYLPPGASGIEIRATGTGETRVLLLGGEPLDEQIVMWWNFIGSSHEEIVAFREQWQQERAAGGSEQGRFGTFPDAWDSTLPAPELPNARLTPRE
>AP018920.1|BBG03671.1|5161517_5162009_+|alkyl-hydroperoxide-reductase-AhpD
MSGRVLIDKQNPEVYAAMRRAVRTVRDAAEAAGIDRALMELLNVRVSQLNGCEICLDIHSRAAITAGVTPQRLALLPAWRESRIYDARERAALEIAEAVTLTAATHLDDEAYAKARSGLTDDETSALIWAAITINAFNRISILSRHPVPERDAQGRTTTGALR
>AP018920.1|BBG03670.1|5161185_5161521_+|N-acetyltransferase
MSDNQDTVVTDDPAQHRYSIALDGVRVGLAAYVDDGERRIFHHTEIDDAYGGRGLAGTLVREALTDTRAAGKRIVPMCPYVRRWVSSHEGFADVLDPVTPAVIRTVEQALR
>AP018920.1|BBG03669.1|5160496_5161141_+|hypothetical-protein
MTTAGPGDPTALVALAVPPADLAPGGSGGGLLVLLAGLVLCLGGARSILLAAGAAGFGLAGGLASALGGPVPVTVLVGVAGAAGAVALVRFAAGAAVFVVGGLAGGAAVLGLLAALPSGGGLSRMLTLVVVAAAALVAGLALARARGIVLRIATALGGAALVVRGVISAGPAFLAGLQAPATPLESIAAVVVLVALAYTGYRVQVSFDRRRATA
>AP018920.1|BBG03668.1|5159188_5160331_-|membrane-protein
MLRRDGDSEVAPIELFFDLVYVFAIIQVSHTLLYHLTPRGALETALLFAAVWWLWNYSAWAMNYLDPARTSVRLLNALLMLAALGMALALPTAFSDGGLLFAACYATAQIGRPLFMWIAMRGHVLSRNYRNLLVWSSVAGGLFLLGALLPPTARLVVWGLAVAVDLAGPRVEFRVPGLGSTPMRSWPIDIVHLAERNRLVFIIALGESILIMGFTLSELEPITPYAVLIAGLGFTGLVALWWSYFALAGHDAPASHGDDSAGAARAAFAYAHGLMVAGAVLFAVGIEVHLTHPENGPALVLVSIGGPLLYLAGNTIYLRGRTGAAGRSRYLAAVILVVGGAVALLFGAALPAIVIGLVVLAVLIGLAAVTQLSTRRAPAY
>AP018920.1|BBG03667.1|5157836_5159195_+|mycothione-reductase
MAHHDLAVVGTGSGNTIVDERFAGLDVVHVEATRFGGTCLNVGCIPTKMLAHTAEIAESVRTASRLGIDARIDRIRWRDIVDRVYGRLDPIGDDGREYRSEHGTVHIGHARFTGPRAMTVELAEGGTTAFTADRIVLATGGRPVVPPPVADSGVPFDTSDTIMRIGELPRHLAVLGGGYIAAELAHVFGGLGCEVTIVELADTLLDGMDETVTERFTAAARERFDVRTGRSVERVTGSAGDVRLHLDDGTQVRADRLLVAAGRIPNGDRMDLAAGGVATHDDGRVRVDRHGRTTADGVWALGDVSTPHPLKHVANHEATIVAHNLAHPDDLRTVDHDRVPAAVFASPQVGTVGRTGQQCRAEGLAHRTGLHEYGDVAYGWAMEEQRGFCKIITSPDGTLLGAHVLGPQASVLVQQLVQAMALGTTAQQLADVQYWIHPALSEVVENALRDAQ
>AP018920.1|BBG03666.1|5156198_5156996_-|molybdate-binding-protein
MKSRSVPRSVGAALAATALAVLAGCGGGDTGGDQEQGGQAGGGTLTVFAAASLTGTFEELEQRFEAANPGTDVVFNFAGSSALAQQINQGAPADVFASADQNNMTKVTDADKAEGAPVVFATNTLQIAVAPQNPKAVASLQDLVNPDLRTVVCAPQVPCGSATEKIEQAAGVDIPAVSEEQDVKSVLQKVTTGNADAGLVYRTDVTASNGQAQGVDFDQAAQAVNEYPIAVLRDTQNQALAQQWVDYVNGDEGRQVLEAAGFGAP
>AP018920.1|BBG03665.1|5155144_5156161_+|cytochrome-c-oxidase-assembly-protein
MELVDVWFVLIAVLWTGYLCLEGFDFGVGMLLPAVARDEHDRQVALGTIGPVWDGNEVWLLVAGGATFAAFPEWYASLFSGFYLAFLLLLVALILRGIALEYRAKEPRWAPVLDRILTGSSLAAALLVGVALSNIVRGVPLDADHEFTGTLLTLLNPYALLGGVTLVLVFALHGAVFLALKTDGPVRERSAAVAASAGLLAVPAGGVFLVWTLLDGAPLWALAPVAVAALGLVLATVLVARGREGWSFTATTVAIVAVAVTLFGSLYPDVLPSTIDPAFSLNVVNAASTPYTLTIMTWVAGIFTPIVLGYQAWTFWVFRRRLTRADHGAPAELAGGAS
>AP018920.1|BBG03675.1|5163937_5164255_-|hypothetical-protein
MSAMSTPSSVDAPADSAVDSAVEGAPSPAACDAHPFSLLVADGGDGLAKVLVTLRSRRYQLRELRADLSGDIGRVEGSVEPDGRDPELLLEQLRRVVAVVRAEHG
>AP018920.1|BBG03676.1|5164393_5165089_-|DSBA-oxidoreductase
MEIWSDVVCPWCAIGKRRFEAALAGFAHRDDVEVRWRSFQLDPQASGERESGPGPLAAKLGVSVEQAREMLDGVTATAAEDGLEFRFDIARHGNTLDAHRLLHLAWELGGASLQGALKERLLRASFTEGEPVGDPDTLAQLAASAGVPEADARAVLGSDRYLDAVRGDQELARRYGISGVPFFVIDDRFGVSGAQPAEAFGQALDRAWADAHPLTPVGDDGRTCADGSCTT
>AP018920.1|BBG03677.1|5165140_5166466_-|phenylacetate-coenzyme-A-ligase
MTTTARRLGDSPPPELLDREERIPVDELRALQLRRLQWSLRHAYDNVPHYRARFDAHGVHPDDCRELSDIARFPMTTKADLRENYPFGMFAVPRERIARVHASSGTTGRPTVVGYTATDIDNWATLMARSIRAAGGRPGHRVHNAYGYGLFTGGLGAHFGIEKLGATAIPISGGMTPRQVQLIGDFEPDVIMLTPSYMLTLLDEFARQGVDPRSTSLKVGIFGAEPWSEQMRIEIEDRTDMHAVDIYGLSEVMGPGVSQECVETKDGLHIWEDHFLPEVVDPLDGTSLPDGQEGELLFTSLTKEGLPIIRYRTRDLTTLLPGTARPAMRRMAKITGRSDDMIILRGVNVFPTQIEEIVLRTPGLAPHFQLVLTTEGRMDALAVRVEARHDTPAGRREPAAAELIRAVKETVGVTVACEIVDPDSLERSVGKLQRLQDRRAR
>AP018920.1|BBG03678.1|5166462_5168493_-|bifunctional-aldehyde-dehydrogenase/enoyl-CoA-hydratase
MTLLRSHLSGSWQAGTGDGRPLHDAVTGEEVARLSTDGLDVAGALAYGRRTGGPALRELTFHQRAALLKALGQHLREHRERLYSVSARTGATLGDSKFDVDGGIGVLLAYASKAKRELPNDTFHVEGAVEPLGRGGTFLGQHVLTPLRGVAVQVNAFNFPVWGPLEKFAPAFLAGVPTLIKPASPTAFLTAELVELIIGSGLLPEGSVQFVAGSLGDTFDHLTGQDLVSFTGSASTAQTLRSHPGIVRNSVRFSAEADSLNLAALGPDAAPGTPEFDLFVKALSTEMTVKAGQKCTAIRRAFVPRAQVDAVVEAVSERLAKVVVGAPGAEGVRMGALASLDQREEVRRSVKALRAAGRIVFGDPDHVEVTGADADRGAFVSPLLLVGDPDRAEPHEVEAFGPVSTVLPYDTTDQLIDYAARGQGSLAGSVVSADPAFVREVVLGIAPFHGRVHVLNARDAGESTGHGSPLPQLVHGGPGRAGGGEEMGGIRGVLHHMQRTAIQADPDSLAAITGRWVTGAQRHTSEVHPFRKHLEELRPGDCLVAGPRRVTQADVEHFAEFTGDTFYAHMDEAAAAANPLFGQRVAHGYLVVSLAAGLFVDPDPGPVLANFGVDGLRFLTPVRFDDELTVTLTCKQLTPRDSADYGEVRWDADVTRQDGESVARYDVLTLVAKKDA
>AP018920.1|BBG03679.1|5168644_5169454_+|putative-enoyl-CoA-hydratase/isomerase
MSDPVQPAVLVARDDTDPAVAVVTLNRPAKYNALTVELKEALLTAVAEVTGDESVRAVVITGSGKAFCVGQDLGEHATALENDPSTAFDTVREHYNPLILAITGTAKPVIAAINGACVGAGLGLALAADLRVAAEGLSFATAFTGIGLTADSGLSASLAHAVGVSRATELLLLGEKFTAEDARNWGLVRDVVPAEDVLPAALGLARRLAAGPTRAYAEVKTAIRFGAVNELPAVLEHEADAQARLAGTTDHQRAVADFLAKKAPTFEGR
>AP018920.1|BBG03680.1|5169450_5170059_+|TetR-family-transcriptional-regulator
MSSAVRRARRPSGGRDQLLETAVGEFITRGYDATSMEDLSRAAGITKSSFYHHFTGKEALLRAALERAVDGLFGVLSLPVAQTGGPAQRLRAIVSEQVRVLMRELPYVTLLLRVRGNTETERWALERRRAFDAAVTGLVREAVEAGEVRADVDPALAARLLSGLVNSIVEWYRPGRPGSATLPDDVVNAAFTGIVPAPTDRA
>AP018920.1|BBG03681.1|5170304_5170622_+|hypothetical-protein
MGERRRAAAWQARANQAGGLTSRALDEEIEALLAADPVTDPAEPGSPVEPGGPAESGGPVESGGPVEPGNPATATDPLRRESASAAPAPDAPADPSAPEGQDPAR
>AP018920.1|BBG03682.1|5170618_5171404_+|IclR-family-transcriptional-regulator
MTSPDRATAPHRGRPTGHTGSVVARALGVLEAFGPDRPALTLSELARHAGIPLSTAHRLVGDLTGWGALERDETGRYRIGLRMWELGALAPRGQALRETALPFLEDLSHVTRENVQLAVREGTELVFVERLAGSGAVPVHTRVGGRFGLTATGVGLVLLAHAPPELQEEVLAGHVERYTPFTVTDPARLRRILADVRRDGYSVSDRQVTDDALSVGAPVQDAHGRVVAAVSLVVRRGTAAPRALAPLVRTSARGIGRALTD
>AP018920.1|BBG03683.1|5171528_5172584_+|vanillate-monooxygenase
MSTIPRDQWYVAAYTAEIGRELFSRTICGDPILFWRTEAGEVTAHADRCVHRRFPLSQAPSRLVGDTVVCGYHGFTYDAGGRCVAVPGQTRVPRTARLAQYPVVEQDSLVWVWIGDPELADPGRIPRASYLDAPGWTTVRGMEPLAARYSLLVDNLLDLSHETYLHGGYIGTPEVAQTPISTEVDDDAGIVYVSRHMADAECPPFYERSTGLSGRISRWQDIEYTPPCLYKLHSRIAPVGSVPNPDGSDPDAFHVEVVYAITPETEHSTHDFWLVARDFALDDEGVSAFLAEQNRTVVLQDVEALDVLEQVIATEPAGYQELSVNIDTGGLAARRMLTRMAGGAVPAVPAR
>AP018920.1|BBG03684.1|5172580_5172799_+|hypothetical-protein
MSGLPPVLTGERVHRIHWVLGTDRLRAVCHCGAERLFDDPVELWEWLLGHPDDHRPTAGAPDRSPALAGSPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP018920_11	11.2\|2930376\|18\|AP018920\|CRT	2930376-2930393	18	AP018920.1	2930520-2930537	0	1.0
AP018920_11	11.4\|2930460\|18\|AP018920\|CRT	2930460-2930477	18	AP018920.1	2930304-2930321	0	1.0
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	6841114-6841131	0	1.0
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	AP018920.1	2930508-2930537	1	0.967
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	AP018920.1	2930292-2930321	1	0.967
AP018920_11	11.4\|2930460\|18\|AP018920\|CRT	2930460-2930477	18	AP018920.1	2930292-2930309	1	0.944
AP018920_11	11.5\|2930496\|18\|AP018920\|CRT	2930496-2930513	18	AP018920.1	2930304-2930321	1	0.944
AP018920_16	16.1\|5821475\|18\|AP018920\|CRISPRCasFinder	5821475-5821492	18	AP018920.1	999861-999878	1	0.944
AP018920_16	16.1\|5821475\|18\|AP018920\|CRISPRCasFinder	5821475-5821492	18	AP018920.1	3306779-3306796	1	0.944
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	1420461-1420478	1	0.944
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	1556880-1556897	1	0.944
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	1817759-1817776	1	0.944
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	2652662-2652679	1	0.944
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	3167860-3167877	1	0.944
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018920.1	3338512-3338529	1	0.944
AP018920_7	7.1\|1858320\|16\|AP018920\|CRISPRCasFinder	1858320-1858335	16	AP018921.1	43119-43134	2	0.875
AP018920_7	7.1\|1858320\|16\|AP018920\|CRISPRCasFinder	1858320-1858335	16	AP018921.1	77721-77736	2	0.875
AP018920_7	7.1\|1858320\|16\|AP018920\|CRISPRCasFinder	1858320-1858335	16	AP018921.1	111763-111778	2	0.875
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	AP018920.1	2930304-2930333	2	0.933
AP018920_15	15.2\|5163885\|16\|AP018920\|CRISPRCasFinder	5163885-5163900	16	AP018921.1	84266-84281	2	0.875
AP018920_15	15.2\|5163885\|16\|AP018920\|CRISPRCasFinder	5163885-5163900	16	AP018921.1	213067-213082	2	0.875
AP018920_16	16.3\|5821565\|18\|AP018920\|CRISPRCasFinder	5821565-5821582	18	AP018921.1	1315-1332	2	0.889

1. spacer 11.2|2930376|18|AP018920|CRT matches to position: 2930520-2930537, mismatch: 0, identity: 1.0

gcatcccacgcggcagcc	CRISPR spacer
gcatcccacgcggcagcc	Protospacer
******************

2. spacer 11.4|2930460|18|AP018920|CRT matches to position: 2930304-2930321, mismatch: 0, identity: 1.0

gcagcccgcgcggcatcc	CRISPR spacer
gcagcccgcgcggcatcc	Protospacer
******************

3. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 6841114-6841131, mismatch: 0, identity: 1.0

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgccgcgaccacc	Protospacer
******************

4. spacer 11.1|2930328|30|AP018920|CRT matches to position: 2930508-2930537, mismatch: 1, identity: 0.967

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccccgcggcatcccacgcggcagcc	Protospacer
******* **********************

5. spacer 11.3|2930412|30|AP018920|CRT matches to position: 2930292-2930321, mismatch: 1, identity: 0.967

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
gcagcccgcgcggcagcccgcgcggcatcc	Protospacer
*******************.**********

6. spacer 11.4|2930460|18|AP018920|CRT matches to position: 2930292-2930309, mismatch: 1, identity: 0.944

gcagcccgcgcggcatcc	CRISPR spacer
gcagcccgcgcggcagcc	Protospacer
*************** **

7. spacer 11.5|2930496|18|AP018920|CRT matches to position: 2930304-2930321, mismatch: 1, identity: 0.944

gcatcccgcgcggcatcc	CRISPR spacer
gcagcccgcgcggcatcc	Protospacer
*** **************

8. spacer 16.1|5821475|18|AP018920|CRISPRCasFinder matches to position: 999861-999878, mismatch: 1, identity: 0.944

gccgttgcgggtgtcgcc	CRISPR spacer
gccggtgcgggtgtcgcc	Protospacer
**** *************

9. spacer 16.1|5821475|18|AP018920|CRISPRCasFinder matches to position: 3306779-3306796, mismatch: 1, identity: 0.944

gccgttgcgggtgtcgcc	CRISPR spacer
gccgttgcgggcgtcgcc	Protospacer
***********.******

10. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 1420461-1420478, mismatch: 1, identity: 0.944

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgcggcgaccacc	Protospacer
******** *********

11. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 1556880-1556897, mismatch: 1, identity: 0.944

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgcggcgaccacc	Protospacer
******** *********

12. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 1817759-1817776, mismatch: 1, identity: 0.944

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgccgcggccacc	Protospacer
************.*****

13. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 2652662-2652679, mismatch: 1, identity: 0.944

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgccgcgaccgcc	Protospacer
***************.**

14. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 3167860-3167877, mismatch: 1, identity: 0.944

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgccgcggccacc	Protospacer
************.*****

15. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 3338512-3338529, mismatch: 1, identity: 0.944

gcgcccgccgcgaccacc	CRISPR spacer
gcgcccgcggcgaccacc	Protospacer
******** *********

16. spacer 7.1|1858320|16|AP018920|CRISPRCasFinder matches to position: 43119-43134, mismatch: 2, identity: 0.875

gccggagcccgagcgg	CRISPR spacer
gccgcagcccgaccgg	Protospacer
**** ******* ***

17. spacer 7.1|1858320|16|AP018920|CRISPRCasFinder matches to position: 77721-77736, mismatch: 2, identity: 0.875

gccggagcccgagcgg	CRISPR spacer
gcccgtgcccgagcgg	Protospacer
*** * **********

18. spacer 7.1|1858320|16|AP018920|CRISPRCasFinder matches to position: 111763-111778, mismatch: 2, identity: 0.875

gccggagcccgagcgg	CRISPR spacer
gccggagcccggtcgg	Protospacer
***********. ***

19. spacer 11.3|2930412|30|AP018920|CRT matches to position: 2930304-2930333, mismatch: 2, identity: 0.933

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
gcagcccgcgcggcatcccgcgcggcatcc	Protospacer
*************** ***.**********

20. spacer 15.2|5163885|16|AP018920|CRISPRCasFinder matches to position: 84266-84281, mismatch: 2, identity: 0.875

gagaccgaccggcaga	CRISPR spacer
gagaccgagcgggaga	Protospacer
******** *** ***

21. spacer 15.2|5163885|16|AP018920|CRISPRCasFinder matches to position: 213067-213082, mismatch: 2, identity: 0.875

gagaccgaccggcaga	CRISPR spacer
gagaccgagcgggaga	Protospacer
******** *** ***

22. spacer 16.3|5821565|18|AP018920|CRISPRCasFinder matches to position: 1315-1332, mismatch: 2, identity: 0.889

gcgcccgccgcgaccacc	CRISPR spacer
gcgcctgccgcgaccgcc	Protospacer
*****.*********.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	136150-136179	4	0.867
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	386742-386771	4	0.867
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	286514-286543	4	0.867
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	263794-263823	5	0.833
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	658767-658796	5	0.833
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	346327-346356	5	0.833
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	20866-20895	5	0.833
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	2160-2189	6	0.8
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1937531-1937560	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	917517-917546	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	508821-508850	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_019338	Arthrobacter sp. J3-37 plasmid pJ337-114, complete sequence	72911-72940	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	471672-471701	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1302861-1302890	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_LR134459	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence	155077-155106	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	4852-4881	6	0.8
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	51144-51173	6	0.8
AP018920_2	2.6\|423192\|30\|AP018920\|CRT	423192-423221	30	NZ_LR723678	Arsenite-oxidising bacterium NT-25 plasmid 2	46535-46564	6	0.8
AP018920_2	2.6\|423192\|30\|AP018920\|CRT	423192-423221	30	NZ_FO082821	Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence	127756-127785	6	0.8
AP018920_2	2.6\|423192\|30\|AP018920\|CRT	423192-423221	30	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	445281-445310	6	0.8
AP018920_2	2.6\|423192\|30\|AP018920\|CRT	423192-423221	30	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	414142-414171	6	0.8
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	284071-284100	6	0.8
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	437307-437336	6	0.8
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	819312-819341	6	0.8
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	97079-97108	6	0.8
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	737441-737470	6	0.8
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	142965-142994	6	0.8
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	72909-72938	7	0.767
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NC_021907	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence	72797-72826	7	0.767
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	MF766046	Streptomyces phage Diane, complete genome	18977-19006	7	0.767
AP018920_2	2.3\|423036\|30\|AP018920\|CRT	423036-423065	30	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	421164-421193	7	0.767
AP018920_2	2.3\|423036\|30\|AP018920\|CRT	423036-423065	30	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	93899-93928	7	0.767
AP018920_2	2.3\|423036\|30\|AP018920\|CRT	423036-423065	30	AY846870	Gordonia terrae phage GTE5 genomic sequence	2916-2945	7	0.767
AP018920_2	2.3\|423036\|30\|AP018920\|CRT	423036-423065	30	JF923796	Gordonia phage GTE5, complete genome	6231-6260	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2542603-2542632	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	210446-210475	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	218141-218170	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	265303-265332	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	416904-416933	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	603822-603851	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	24270-24299	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	84211-84240	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	192879-192908	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	MH825699	Streptomyces phage Darolandstone, complete genome	312-341	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_022063	Mycobacterium phage Phelemich, complete genome	41822-41851	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	KF024727	Mycobacterium phage Reprobate, complete genome	41827-41856	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	38125-38154	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	267142-267171	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	747938-747967	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	94728-94757	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	189901-189930	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	44554-44583	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	544532-544561	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1613262-1613291	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	34109-34138	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	44560-44589	7	0.767
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	MN096355	Mycobacterium phage Purky, complete genome	4074-4103	7	0.767
AP018920_10	10.1\|2913525\|28\|AP018920\|CRISPRCasFinder	2913525-2913552	28	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	4943-4970	7	0.75
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	837830-837859	7	0.767
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	KY087993	Mycobacterium phage Hammy, complete genome	60132-60161	7	0.767
AP018920_11	11.1\|2930328\|30\|AP018920\|CRT	2930328-2930357	30	MF324915	Mycobacterium phage Amgine, complete genome	60579-60608	7	0.767
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	310892-310921	7	0.767
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	64294-64323	7	0.767
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	262950-262979	7	0.767
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	563708-563737	7	0.767
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	AY320035	Bacteriophage VWB, complete genome	13205-13234	7	0.767
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NC_005345	Streptomyces phage VWB, complete genome	13205-13234	7	0.767
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	189966-189995	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	251299-251328	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP025016	Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence	213481-213510	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	192985-193014	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	121273-121302	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	319781-319810	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	369602-369631	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP018759	Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence	22098-22127	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	793022-793051	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	24965-24994	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	234566-234595	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	689926-689955	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	689916-689945	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	793087-793116	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	793087-793116	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	52901-52930	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	793071-793100	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	MH651171	Mycobacterium phage Collard, complete genome	40468-40497	8	0.733
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_028947	Mycobacterium phage Kratio, complete genome	40247-40276	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP019439	Thioclava nitratireducens strain 25B10_4 plasmid unnamed2, complete sequence	39732-39761	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP020696	Sulfitobacter sp. D7 plasmid p2SUD7, complete sequence	4230-4259	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP045406	Roseovarius sp. THAF9 plasmid pTHAF9_b, complete sequence	47033-47062	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP045320	Roseivivax sp. THAF197b plasmid pTHAF197b_b, complete sequence	4203-4232	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	260425-260454	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	54228-54257	8	0.733
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	257936-257965	8	0.733
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NZ_AP022602	Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399	50509-50538	9	0.7
AP018920_2	2.1\|422916\|30\|AP018920\|CRT	422916-422945	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3444610-3444639	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP023450	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence	133247-133276	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	57951-57980	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1197154-1197183	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	175481-175510	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	230494-230523	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	42215-42244	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	CP021182	Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence	37593-37622	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP041018	Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence	158741-158770	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP017078	Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence	160280-160309	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	172474-172503	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP018821	Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence	233834-233863	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	706945-706974	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	171543-171572	9	0.7
AP018920_2	2.4\|423084\|30\|AP018920\|CRT	423084-423113	30	NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	84117-84146	9	0.7
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	56499-56528	9	0.7
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	MN543579	Klebsiella pneumoniae strain PM48 plasmid pPM48_140, complete sequence	51908-51937	9	0.7
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	MN543581	Klebsiella pneumoniae strain PM48TC plasmid pPM48TC_fusion, complete sequence	51908-51937	9	0.7
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	LR134207	Klebsiella aerogenes strain NCTC9667 genome assembly, plasmid: 2	162052-162081	9	0.7
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	64302-64331	9	0.7
AP018920_11	11.3\|2930412\|30\|AP018920\|CRT	2930412-2930441	30	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	438793-438822	9	0.7

1. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.867

--tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ggtcc--caggtgccgccgacgcgggcgcggc	Protospacer
  ***  ********************** *

2. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867

--tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gacccgg--ggtgccgccgacgcggccgccga	Protospacer
  .****  **************** ******

3. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.867

tccggca--ggtgccgccgacgcgggcgccga	CRISPR spacer
--cggcggcggtgccgccgatgcgggcgccga	Protospacer
  ****.  ***********.***********

4. spacer 2.4|423084|30|AP018920|CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 5, identity: 0.833

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gccggcaggtggcgccgacgcgggcgatgc	Protospacer
 ********** ************** .*

5. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.833

tccggc--aggtgccgccgacgcgggcgccga	CRISPR spacer
--cggcggaggtgccgccgacgacggcgccgg	Protospacer
  ****  **************  *******.

6. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.833

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
gcggcccgcgcggcagccgacgcggccgcg	Protospacer
**.*************** *******  *

7. spacer 11.3|2930412|30|AP018920|CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 5, identity: 0.833

-gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
cgca-tcggcacggcagcacacgcggcatcc	Protospacer
 *** .* **.******* ************

8. spacer 2.1|422916|30|AP018920|CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
tgccgtcggcgcagcggagaaaggcgcggt	Protospacer
*** . ****** ******* ********

9. spacer 2.1|422916|30|AP018920|CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
tgccgtcggcgcagcggagaaaggcgcggt	Protospacer
*** . ****** ******* ********

10. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tcacgcaggtgccgccgacgcggctgcctt	Protospacer
**  ******************* .***

11. spacer 2.4|423084|30|AP018920|CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.8

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tcacgcaggtgccgccgacgcggctgcctt	Protospacer
**  ******************* .***

12. spacer 2.4|423084|30|AP018920|CRT matches to NC_019338 (Arthrobacter sp. J3-37 plasmid pJ337-114, complete sequence) position: , mismatch: 6, identity: 0.8

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cccacaaggtgccgccgaggcggtcgccga	Protospacer
.**.  ************ **** ******

13. spacer 2.4|423084|30|AP018920|CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 6, identity: 0.8

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tcacgcaggtgccgccgacgcggctgcctt	Protospacer
**  ******************* .***

14. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 6, identity: 0.8

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tgccgccggtgccgccgacgcgggcggcct	Protospacer
* * ** ******************* *

15. spacer 2.4|423084|30|AP018920|CRT matches to NZ_LR134459 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence) position: , mismatch: 6, identity: 0.8

-tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ggacgac-ggtgccgcccacgcgggcggcga	Protospacer
   **.* ********* ********* ***

16. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 6, identity: 0.8

tccggcaggtgccgccgacgcgg-gcgccga	CRISPR spacer
ggcggcaggtgccgccgacggggcccgtcg-	Protospacer
  ****************** **  **.**

17. spacer 2.4|423084|30|AP018920|CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 6, identity: 0.8

tccggc--aggtgccgccgacgcgggcgccga	CRISPR spacer
--aggccgtggtgccgccgacgcccgcgccga	Protospacer
   ***   **************  *******

18. spacer 2.6|423192|30|AP018920|CRT matches to NZ_LR723678 (Arsenite-oxidising bacterium NT-25 plasmid 2) position: , mismatch: 6, identity: 0.8

ggccggaagcgctgccgacccgagtgccgc	CRISPR spacer
ggccggaagcgctgccgagccgcctccgcc	Protospacer
****************** ***  * *  *

19. spacer 2.6|423192|30|AP018920|CRT matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 6, identity: 0.8

ggccggaagcgctgccgacccgagtgccgc	CRISPR spacer
ggccggaagcgctgccgagccgcctccgcc	Protospacer
****************** ***  * *  *

20. spacer 2.6|423192|30|AP018920|CRT matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 6, identity: 0.8

ggccggaagcgctgccgacccgagtgccgc	CRISPR spacer
cgcacgcagcgctgccgatcagagtgccgc	Protospacer
 **  * ***********.* *********

21. spacer 2.6|423192|30|AP018920|CRT matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 6, identity: 0.8

ggccggaagcgctgccgacccgagtgccgc	CRISPR spacer
cgcacgcagcgctgccgatcagagtgccgc	Protospacer
 **  * ***********.* *********

22. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccgcgcggcaacccgcgcgccgacg	Protospacer
*************** ***.**** *..*

23. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccgcgcggcaacccgcgcgccgacg	Protospacer
*************** ***.**** *..*

24. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccgcgcggcaacccgcgcgccgacg	Protospacer
*************** ***.**** *..*

25. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccgcgcggcaacccgcgcgccgacg	Protospacer
*************** ***.**** *..*

26. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccgcgcggcaacccgcgcgccgacg	Protospacer
*************** ***.**** *..*

27. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
gcatcccgcgcggcaacccgcgcgccgacg	Protospacer
*************** ***.**** *..*

28. spacer 2.1|422916|30|AP018920|CRT matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 7, identity: 0.767

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
agcagccggcgctgcggagaccggcgcggt	Protospacer
 **.. ******.******** *******

29. spacer 2.1|422916|30|AP018920|CRT matches to NC_021907 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence) position: , mismatch: 7, identity: 0.767

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
agcagccggcgctgcggagaccggcgcggt	Protospacer
 **.. ******.******** *******

30. spacer 2.1|422916|30|AP018920|CRT matches to MF766046 (Streptomyces phage Diane, complete genome) position: , mismatch: 7, identity: 0.767

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
ggtgtccggcgcctcggagacaggctcgga	Protospacer
 *.*  ******* *********** ***.

31. spacer 2.3|423036|30|AP018920|CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 7, identity: 0.767

ggccggaggcgccgcggaaccgggtgctga	CRISPR spacer
cgccggacgcgccgctgaaccgggtgacct	Protospacer
 ****** ******* ********** .

32. spacer 2.3|423036|30|AP018920|CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.767

ggccggaggcgccgcggaaccgggtgctga	CRISPR spacer
gctcctcggcaccgcggaaccgggtgcgga	Protospacer
* .*   ***.**************** **

33. spacer 2.3|423036|30|AP018920|CRT matches to AY846870 (Gordonia terrae phage GTE5 genomic sequence) position: , mismatch: 7, identity: 0.767

ggccggaggcgccgcggaacc-gggtgctga	CRISPR spacer
ggccggacgcgccgcggaaccttcatgcca-	Protospacer
******* *************   .***..

34. spacer 2.3|423036|30|AP018920|CRT matches to JF923796 (Gordonia phage GTE5, complete genome) position: , mismatch: 7, identity: 0.767

ggccggaggcgccgcggaacc-gggtgctga	CRISPR spacer
ggccggacgcgccgcggaaccttcatgcca-	Protospacer
******* *************   .***..

35. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gggcgcaggtgccgccgccgccggcgccgc	Protospacer
    ************* *** *******

36. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcacgcaggtgccgcccacgcgggtgccct	Protospacer
 *  ************ *******.***

37. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP007050 (Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgagaaggtgccgacgacgcggccgccgc	Protospacer
 * .* ******** ******** *****

38. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cgtggagggtgcggccggcgcgggcgccga	Protospacer
. .** .***** ****.************

39. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgggcaggcgccgccgaagcgggcgaagt	Protospacer
 * ******.******** *******  *

40. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tgcggctggtgccgccgacgccggcccgct	Protospacer
* **** ************** *** *

41. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgcgaaggtgccgacgacgcggccgccgc	Protospacer
 *  * ******** ******** *****

42. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP054034 (Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgcgaaggtgccgacgacgcggccgccgc	Protospacer
 *  * ******** ******** *****

43. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgcgaaggtgccgacgacgcggccgccgc	Protospacer
 *  * ******** ******** *****

44. spacer 2.4|423084|30|AP018920|CRT matches to MH825699 (Streptomyces phage Darolandstone, complete genome) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cctgatcggcgccgccgacgcgcgcgccga	Protospacer
.*.*.. **.************ *******

45. spacer 2.4|423084|30|AP018920|CRT matches to NC_022063 (Mycobacterium phage Phelemich, complete genome) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ccgctccggtgccgccgacgcagccgccga	Protospacer
.*   * **************.* ******

46. spacer 2.4|423084|30|AP018920|CRT matches to KF024727 (Mycobacterium phage Reprobate, complete genome) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ccgctccggtgccgccgacgcagccgccga	Protospacer
.*   * **************.* ******

47. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ttgccctggtgtcgcccacgcgggcgccga	Protospacer
*.   * ****.**** *************

48. spacer 2.4|423084|30|AP018920|CRT matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgagaaggtgccgacgacgcggccgccgc	Protospacer
 * .* ******** ******** *****

49. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcagccaggtgacgccgacgcgggcggagc	Protospacer
 * * ****** **************  *

50. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgagaaggtgccgacgacgcggccgccgc	Protospacer
 * .* ******** ******** *****

51. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgcgaaggtgccgacgacgcggccgccgc	Protospacer
 *  * ******** ******** *****

52. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tctcttcggtgccgccgccgggggcgccga	Protospacer
**.  . ********** ** *********

53. spacer 2.4|423084|30|AP018920|CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgggcaggcgccgccgaagcgggcgaagt	Protospacer
 * ******.******** *******  *

54. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tgcggctggtgccgccgacgccggcccgct	Protospacer
* **** ************** *** *

55. spacer 2.4|423084|30|AP018920|CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tctcctcggtgccgccgccgggggcgccga	Protospacer
**.  . ********** ** *********

56. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tctcttcggtgccgccgccgggggcgccga	Protospacer
**.  . ********** ** *********

57. spacer 2.4|423084|30|AP018920|CRT matches to MN096355 (Mycobacterium phage Purky, complete genome) position: , mismatch: 7, identity: 0.767

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cctcgacggtgccgccggcgcgggcggcga	Protospacer
.*. *  **********.******** ***

58. spacer 10.1|2913525|28|AP018920|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 7, identity: 0.75

cgtatgatcttgacatcgtgatcgttcg	CRISPR spacer
ttcttgatcttgacgtcgtgatcgtcgg	Protospacer
. . **********.**********. *

59. spacer 11.1|2930328|30|AP018920|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
ggtgcgggcgccgcatcccacgcggcggcc	Protospacer
*   *  **** **************.***

60. spacer 11.1|2930328|30|AP018920|CRT matches to KY087993 (Mycobacterium phage Hammy, complete genome) position: , mismatch: 7, identity: 0.767

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
tcacggtgcgcggcgtcccacgctgcagcc	Protospacer
 **.  .*******.******** ******

61. spacer 11.1|2930328|30|AP018920|CRT matches to MF324915 (Mycobacterium phage Amgine, complete genome) position: , mismatch: 7, identity: 0.767

gcatcccgcgcggcatcccacgcggcagcc	CRISPR spacer
tcggcgtgcgcctcatcccacgcggcagcc	Protospacer
 *. * .****  *****************

62. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.767

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
cccgcccgcgcggcagcacacgcggccagg	Protospacer
 * ************** ********

63. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 7, identity: 0.767

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
gactcccgcggtgcagcccacgcggcaggc	Protospacer
*   ******  ***************  *

64. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 7, identity: 0.767

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
gacgccctcgcggcagcccgcgcggcggcg	Protospacer
*  **** ***********.******. *

65. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 7, identity: 0.767

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
cgcgtcggcgcgtcagcacacgcggcatcc	Protospacer
   *.* ***** **** ************

66. spacer 11.3|2930412|30|AP018920|CRT matches to AY320035 (Bacteriophage VWB, complete genome) position: , mismatch: 7, identity: 0.767

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
ccggcccgagcggcagcccgcgcggcgagc	Protospacer
 *.***** **********.******.  *

67. spacer 11.3|2930412|30|AP018920|CRT matches to NC_005345 (Streptomyces phage VWB, complete genome) position: , mismatch: 7, identity: 0.767

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
ccggcccgagcggcagcccgcgcggcgagc	Protospacer
 *.***** **********.******.  *

68. spacer 2.1|422916|30|AP018920|CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.733

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
cggcttcggcgctgcggagaccggcgcggc	Protospacer
.*    ******.******** *******

69. spacer 2.4|423084|30|AP018920|CRT matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cctccacggtgccgacgacgcgggcgccgt	Protospacer
.*.    ******* **************

70. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gcgaaaaggtgccgacgacgcggccgccgc	Protospacer
 * .. ******** ******** *****

71. spacer 2.4|423084|30|AP018920|CRT matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gtgagaaggtgccgacgacgcggccgccgc	Protospacer
 . .* ******** ******** *****

72. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
atcggcaggttccgccggcgcgggcaaggc	Protospacer
 .******** ******.*******.  *

73. spacer 2.4|423084|30|AP018920|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
acgcccccgtgccgccgatgcgggcgccgc	Protospacer
 *   *  **********.**********

74. spacer 2.4|423084|30|AP018920|CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ggccatcggcgccgccaacgcgggcgccga	Protospacer
  * .. **.******.*************

75. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP018759 (Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cacccagggcgccgccgacgccggcgccga	Protospacer
. *   .**.*********** ********

76. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
agcggcgggtgccgccggcgcgggctgtgc	Protospacer
  ****.**********.*******  .*

77. spacer 2.4|423084|30|AP018920|CRT matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ggcggccggcgccgccgacgcgggcattgg	Protospacer
  **** **.***************...*.

78. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
gtgagaaggtgccgacgacgcggccgccgc	Protospacer
 . .* ******** ******** *****

79. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
agcggcgggtgccgccggcgcgggctgtgc	Protospacer
  ****.**********.*******  .*

80. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
agcggcgggtgccgccggcgcgggctgtgc	Protospacer
  ****.**********.*******  .*

81. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
agcggcgggtgccgccggcgcgggctgtgc	Protospacer
  ****.**********.*******  .*

82. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
agcggcgggtgccgccggcgcgggctgtgc	Protospacer
  ****.**********.*******  .*

83. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
tttcttcggtgccgccgccgggggcgccga	Protospacer
*..  . ********** ** *********

84. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
agcggcgggtgccgccggcgcgggctgtgc	Protospacer
  ****.**********.*******  .*

85. spacer 2.4|423084|30|AP018920|CRT matches to MH651171 (Mycobacterium phage Collard, complete genome) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cgcggcaggtgccgccgccgcggcgggagc	Protospacer
. *************** *****  *  *

86. spacer 2.4|423084|30|AP018920|CRT matches to NC_028947 (Mycobacterium phage Kratio, complete genome) position: , mismatch: 8, identity: 0.733

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cgcggcaggtgccgccgccgcggcgggagc	Protospacer
. *************** *****  *  *

87. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP019439 (Thioclava nitratireducens strain 25B10_4 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
tcagcccgcgggccagcccacgcgatacgg	Protospacer
 ********* * ***********..*.

88. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP020696 (Sulfitobacter sp. D7 plasmid p2SUD7, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
tcagcccgcgggccagcccacgcgatacgg	Protospacer
 ********* * ***********..*.

89. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP045406 (Roseovarius sp. THAF9 plasmid pTHAF9_b, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
tcagcccgcggggcagtccacgcgaaaagg	Protospacer
 ********* *****.*******. *

90. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP045320 (Roseivivax sp. THAF197b plasmid pTHAF197b_b, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
tcagcccgcgggccagcccacgcgatacgg	Protospacer
 ********* * ***********..*.

91. spacer 11.3|2930412|30|AP018920|CRT matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
ccagcccgcgcgccagcccgcgcgaaacgg	Protospacer
 *********** ******.****. *.

92. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
cccgcccgcgcggcagcacccgcggccagg	Protospacer
 * ************** * ******

93. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 8, identity: 0.733

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
ccagcccgcgcgccagcccgcgcgaaacgg	Protospacer
 *********** ******.****. *.

94. spacer 2.1|422916|30|AP018920|CRT matches to NZ_AP022602 (Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399) position: , mismatch: 9, identity: 0.7

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
gctcggtagcgccgcggtgacaggcgcggc	Protospacer
  . .*..********* ***********

95. spacer 2.1|422916|30|AP018920|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.7

tgcgagcggcgccgcggagacaggcgcggg	CRISPR spacer
gcttctcggcgtcgcggagccaggcgcggt	Protospacer
  .   *****.******* *********

96. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP023450 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

97. spacer 2.4|423084|30|AP018920|CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

98. spacer 2.4|423084|30|AP018920|CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
cgcggcagggcccgccgacgcgggcctgcg	Protospacer
. *******  ************** .  .

99. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

100. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
ggcggcaggtgccgccgacggggcccgtcc	Protospacer
  ****************** ** *  .

101. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

102. spacer 2.4|423084|30|AP018920|CRT matches to CP021182 (Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

103. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP041018 (Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

104. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP017078 (Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

105. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

106. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

107. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

108. spacer 2.4|423084|30|AP018920|CRT matches to NZ_CP013265 (Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

109. spacer 2.4|423084|30|AP018920|CRT matches to NC_020542 (Sphingomonas sp. MM-1 plasmid pISP0, complete sequence) position: , mismatch: 9, identity: 0.7

tccggcaggtgccgccgacgcgggcgccga	CRISPR spacer
caaaacaggtgccgacggcgcgggcgcccg	Protospacer
.  ..********* **.********** .

110. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
acagccagcgcggcagccaacgcgaaggaa	Protospacer
.***** *********** *****. .

111. spacer 11.3|2930412|30|AP018920|CRT matches to MN543579 (Klebsiella pneumoniae strain PM48 plasmid pPM48_140, complete sequence) position: , mismatch: 9, identity: 0.7

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
acagccagcgcggcagccaacgcgaaggaa	Protospacer
.***** *********** *****. .

112. spacer 11.3|2930412|30|AP018920|CRT matches to MN543581 (Klebsiella pneumoniae strain PM48TC plasmid pPM48TC_fusion, complete sequence) position: , mismatch: 9, identity: 0.7

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
acagccagcgcggcagccaacgcgaaggaa	Protospacer
.***** *********** *****. .

113. spacer 11.3|2930412|30|AP018920|CRT matches to LR134207 (Klebsiella aerogenes strain NCTC9667 genome assembly, plasmid: 2) position: , mismatch: 9, identity: 0.7

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
acagccagcgcggcagccaacgcgaaggaa	Protospacer
.***** *********** *****. .

114. spacer 11.3|2930412|30|AP018920|CRT matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
cgcgcccgcgcggcagcacccgcggccagg	Protospacer
   ************** * ******

115. spacer 11.3|2930412|30|AP018920|CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 9, identity: 0.7

gcagcccgcgcggcagcccacgcggcatcc	CRISPR spacer
cgcgcccgcgcggcagcacccgcggccagg	Protospacer
   ************** * ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

688521 : 729047

Mycobacterium_phage(22.22%)

integrase,transposase,protease

attL 680730:680746|attR 701877:701893

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
680730:680746	attL	NA	NA	NA	NA
BBF99459.1\|688521_689781_-\|integrase	site-specific integrase	A0A023ZX87	Mycobacterium_phage	1.5e-40	32.7
BBF99460.1\|689777_690143_-	hypothetical protein	NA	NA	NA	NA
BBF99461.1\|690139_690319_-	hypothetical protein	NA	NA	NA	NA
BBF99462.1\|690320_691562_-	hypothetical protein	NA	NA	NA	NA
BBF99463.1\|691558_691714_-	hypothetical protein	NA	NA	NA	NA
BBF99464.1\|691713_692109_-	hypothetical protein	NA	NA	NA	NA
BBF99465.1\|692212_692989_-	GntR family transcriptional regulator	NA	NA	NA	NA
BBF99466.1\|693187_693496_+	NUDIX hydrolase	NA	NA	NA	NA
BBF99467.1\|693586_695515_+	chromosome segregation protein SMC	NA	NA	NA	NA
BBF99468.1\|695517_696627_+	hypothetical protein	NA	NA	NA	NA
BBF99469.1\|696680_697520_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	1.0e-11	34.1
BBF99470.1\|697777_698323_+	hypothetical protein	NA	NA	NA	NA
BBF99471.1\|698424_699936_-	hypothetical protein	NA	NA	NA	NA
BBF99472.1\|700259_700637_-	hypothetical protein	A0A2R2ZGM9	Clostridioides_phage	5.0e-11	36.7
BBF99473.1\|700976_701558_-	FMN reductase	NA	NA	NA	NA
BBF99474.1\|701694_702150_-	chaP protein	NA	NA	NA	NA
701877:701893	attR	NA	NA	NA	NA
BBF99475.1\|702264_702948_+	TetR family transcriptional regulator	NA	NA	NA	NA
BBF99476.1\|702964_704278_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.2e-104	52.1
BBF99477.1\|705761_707018_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.7e-79	43.2
BBF99478.1\|707286_708603_+	putative cytochrome P450 139	A0A1V0SF03	Hokovirus	1.6e-11	25.7
BBF99479.1\|708828_709143_-	hypothetical protein	NA	NA	NA	NA
BBF99480.1\|709262_709622_-	hypothetical protein	NA	NA	NA	NA
BBF99481.1\|709905_710859_+	ubiquinone biosynthesis protein	NA	NA	NA	NA
BBF99482.1\|710934_711207_-	hypothetical protein	NA	NA	NA	NA
BBF99483.1\|711278_712907_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.7e-11	24.6
BBF99484.1\|712903_713500_+	TetR family transcriptional regulator	NA	NA	NA	NA
BBF99485.1\|713705_714239_+	hypothetical protein	NA	NA	NA	NA
BBF99486.1\|714243_714618_-	hypothetical protein	NA	NA	NA	NA
BBF99487.1\|714605_715019_-	putative fluoride ion transporter CrcB 1	NA	NA	NA	NA
BBF99488.1\|715129_715540_-	hypothetical protein	NA	NA	NA	NA
BBF99489.1\|715614_716100_+	hypothetical protein	NA	NA	NA	NA
BBF99490.1\|716071_717028_-	hypothetical protein	NA	NA	NA	NA
BBF99491.1\|717083_717716_-	MerR family transcriptional regulator	NA	NA	NA	NA
BBF99492.1\|717726_718278_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	NA	NA	NA	NA
BBF99493.1\|718359_719469_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
BBF99494.1\|719465_719777_-	hypothetical protein	NA	NA	NA	NA
BBF99495.1\|719664_720312_+	putative transcriptional regulatory protein TetR	NA	NA	NA	NA
BBF99496.1\|720388_721330_-	hypothetical protein	NA	NA	NA	NA
BBF99497.1\|721963_722167_+	putative cold shock protein A	Q9AZD3	Lactococcus_phage	5.2e-15	56.2
BBF99498.1\|722528_723044_+	hypothetical protein	NA	NA	NA	NA
BBF99499.1\|723371_724718_+	membrane protein	NA	NA	NA	NA
BBF99500.1\|724853_725399_+	hypothetical protein	NA	NA	NA	NA
BBF99501.1\|725404_726133_+	membrane protein	NA	NA	NA	NA
BBF99502.1\|726344_726653_+	hypothetical protein	NA	NA	NA	NA
BBF99503.1\|726725_729047_+\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.5e-142	46.3

DBSCAN-SWA_2

1588877 : 1608256

Mycobacterium_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG00334.1\|1588877_1589672_-\|transposase	IS5 family transposase	NA	NA	NA	NA
BBG00335.1\|1589794_1590493_-	hypothetical protein	NA	NA	NA	NA
BBG00336.1\|1590636_1591713_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.7e-160	78.7
BBG00337.1\|1593596_1593902_+	hypothetical protein	NA	NA	NA	NA
BBG00338.1\|1594289_1595957_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
BBG00339.1\|1595875_1596217_-	hypothetical protein	NA	NA	NA	NA
BBG00340.1\|1596307_1596751_+	hypothetical protein	NA	NA	NA	NA
BBG00341.1\|1596796_1597897_-	fatty acid desaturase	A6N231	Microbacterium_phage	5.1e-88	47.2
BBG00342.1\|1598336_1598759_-	hypothetical protein	NA	NA	NA	NA
BBG00343.1\|1598886_1599459_+	hypothetical protein	NA	NA	NA	NA
BBG00344.1\|1599568_1599844_+	hypothetical protein	NA	NA	NA	NA
BBG00345.1\|1600593_1601022_-	hypothetical protein	NA	NA	NA	NA
BBG00346.1\|1601026_1601713_-	hypothetical protein	NA	NA	NA	NA
BBG00347.1\|1601946_1604325_+	helicase	A0A0P0YML3	Yellowstone_lake_phycodnavirus	3.8e-24	28.9
BBG00348.1\|1604346_1604823_+\|transposase	transposase	NA	NA	NA	NA
BBG00349.1\|1604819_1605830_+\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG00350.1\|1606156_1606678_-	hypothetical protein	NA	NA	NA	NA
BBG00351.1\|1607051_1607948_-\|transposase	transposase	Q6H9S6	Enterobacteria_phage	1.5e-42	40.1
BBG00352.1\|1607944_1608256_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.7e-15	50.0

DBSCAN-SWA_3

1611604 : 1652984

Shigella_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG00358.1\|1611604_1612081_+\|transposase	transposase	NA	NA	NA	NA
BBG00359.1\|1612077_1613088_+\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG00360.1\|1613181_1614864_+\|transposase	transposase	NA	NA	NA	NA
BBG00361.1\|1614958_1615549_-	hypothetical protein	NA	NA	NA	NA
BBG00362.1\|1615548_1616583_-	hypothetical protein	NA	NA	NA	NA
BBG00363.1\|1616569_1617190_-	7-cyano-7-deazaguanine synthase	E7DN66	Pneumococcus_phage	7.0e-10	36.8
BBG00364.1\|1617186_1617912_-	7-carboxy-7-deazaguanine synthase	A0A142F2D5	Mycobacterium_phage	6.2e-34	40.8
BBG00365.1\|1617908_1618271_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	NA	NA	NA
BBG00366.1\|1618603_1620337_+\|transposase	transposase	NA	NA	NA	NA
BBG00367.1\|1620475_1620679_-	hypothetical protein	NA	NA	NA	NA
BBG00368.1\|1620743_1620944_-	hypothetical protein	NA	NA	NA	NA
BBG00369.1\|1620944_1621415_+	hypothetical protein	NA	NA	NA	NA
BBG00370.1\|1621579_1621819_+	hypothetical protein	NA	NA	NA	NA
BBG00371.1\|1621926_1622985_-	transcriptional regulator	NA	NA	NA	NA
BBG00372.1\|1623154_1623727_+	hypothetical protein	NA	NA	NA	NA
BBG00373.1\|1623832_1624804_+	hydrogenase	NA	NA	NA	NA
BBG00374.1\|1624858_1626466_+	cytochrome-c3 hydrogenase	NA	NA	NA	NA
BBG00375.1\|1626537_1627308_+	peptidase M52	NA	NA	NA	NA
BBG00376.1\|1627313_1627565_+	hypothetical protein	NA	NA	NA	NA
BBG00377.1\|1627665_1628838_+	hypothetical protein	NA	NA	NA	NA
BBG00378.1\|1628901_1629825_+	hypothetical protein	NA	NA	NA	NA
BBG00379.1\|1629821_1631015_+	hypothetical protein	NA	NA	NA	NA
BBG00380.1\|1631014_1633375_+	carbamoyltransferase	NA	NA	NA	NA
BBG00381.1\|1633380_1633635_+	hydrogenase assembly protein HypC	NA	NA	NA	NA
BBG00382.1\|1633631_1634360_+	hypothetical protein	NA	NA	NA	NA
BBG00383.1\|1634356_1635037_+	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.7e-09	34.8
BBG00384.1\|1635033_1636146_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
BBG00385.1\|1636161_1636434_+	hydrogenase assembly protein HupF	NA	NA	NA	NA
BBG00386.1\|1636448_1637591_+	hydrogenase formation protein HypD	NA	NA	NA	NA
BBG00387.1\|1637593_1638364_+	hypothetical protein	NA	NA	NA	NA
BBG00388.1\|1638360_1639203_+	hypothetical protein	NA	NA	NA	NA
BBG00389.1\|1639403_1639607_+	hypothetical protein	NA	NA	NA	NA
BBG00390.1\|1639963_1640215_-	hypothetical protein	NA	NA	NA	NA
BBG00391.1\|1640350_1640836_+	hypothetical protein	NA	NA	NA	NA
BBG00392.1\|1640875_1641664_-	hypothetical protein	NA	NA	NA	NA
BBG00393.1\|1641749_1642517_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
BBG00394.1\|1642523_1642892_-	hydrogenase expression protein HupH	NA	NA	NA	NA
BBG00395.1\|1643699_1643906_-	hypothetical protein	NA	NA	NA	NA
BBG00396.1\|1643847_1644051_+	hypothetical protein	NA	NA	NA	NA
BBG00397.1\|1644115_1645297_-	phosphoglycerate kinase	NA	NA	NA	NA
BBG00398.1\|1645305_1646319_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
BBG00399.1\|1646315_1647125_-	phosphatase	NA	NA	NA	NA
BBG00400.1\|1647249_1648278_-	fructose-1,6-bisphosphatase	NA	NA	NA	NA
BBG00401.1\|1648793_1649591_-	hypothetical protein	NA	NA	NA	NA
BBG00402.1\|1649704_1650760_+	acid sugar phosphatase	NA	NA	NA	NA
BBG00403.1\|1650872_1651412_-	hypothetical protein	NA	NA	NA	NA
BBG00404.1\|1651411_1651744_-	hypothetical protein	NA	NA	NA	NA
BBG00405.1\|1651779_1652091_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.7e-15	50.0
BBG00406.1\|1652087_1652984_+\|transposase	transposase	Q6H9S6	Enterobacteria_phage	1.5e-42	40.1

DBSCAN-SWA_4

2511331 : 2558446

Shigella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG01171.1\|2511331_2512342_-\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG01172.1\|2512338_2512815_-\|transposase	transposase	NA	NA	NA	NA
BBG01173.1\|2512836_2513241_-	hypothetical protein	NA	NA	NA	NA
BBG01174.1\|2513256_2514171_-	hypothetical protein	U5P429	Shigella_phage	4.8e-15	35.6
BBG01175.1\|2514319_2514610_+\|transposase	transposase	NA	NA	NA	NA
BBG01176.1\|2514714_2515557_+\|transposase	transposase	U5P429	Shigella_phage	2.9e-35	38.5
BBG01177.1\|2515734_2516385_-	hypothetical protein	NA	NA	NA	NA
BBG01178.1\|2516536_2517004_+	hypothetical protein	NA	NA	NA	NA
BBG01179.1\|2517344_2517731_+	hypothetical protein	NA	NA	NA	NA
BBG01180.1\|2517727_2518417_+	hypothetical protein	NA	NA	NA	NA
BBG01181.1\|2518302_2519046_+	hypothetical protein	NA	NA	NA	NA
BBG01182.1\|2518936_2520025_+	tellurium resistance protein TerC	K7QKE8	Escherichia_phage	2.3e-40	33.8
BBG01183.1\|2520021_2520597_+	hypothetical protein	NA	NA	NA	NA
BBG01184.1\|2520708_2520897_-	hypothetical protein	NA	NA	NA	NA
BBG01185.1\|2521039_2522050_-\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG01186.1\|2522046_2522346_-	hypothetical protein	NA	NA	NA	NA
BBG01187.1\|2522463_2523672_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
BBG01188.1\|2523664_2523889_-	hypothetical protein	NA	NA	NA	NA
BBG01189.1\|2524134_2524956_+	hypothetical protein	NA	NA	NA	NA
BBG01190.1\|2525296_2526208_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.0e-33	33.8
BBG01191.1\|2526280_2527177_-\|transposase	transposase	Q6H9S6	Enterobacteria_phage	1.5e-42	40.1
BBG01192.1\|2527173_2527485_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.7e-15	50.0
BBG01193.1\|2527623_2528100_+\|transposase	transposase	NA	NA	NA	NA
BBG01194.1\|2528096_2529107_+\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG01195.1\|2529145_2529349_-	hypothetical protein	NA	NA	NA	NA
BBG01196.1\|2529884_2530379_+	hypothetical protein	Q6H9S3	Enterobacteria_phage	4.8e-30	46.5
BBG01197.1\|2530392_2530632_-	hypothetical protein	NA	NA	NA	NA
BBG01198.1\|2530738_2531527_-	hypothetical protein	NA	NA	NA	NA
BBG01199.1\|2531935_2532721_-	enoyl-[acyl-carrier-protein] reductase [NADH]	NA	NA	NA	NA
BBG01200.1\|2532970_2534590_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
BBG01201.1\|2534688_2536134_-	isocitrate dehydrogenase	NA	NA	NA	NA
BBG01202.1\|2536175_2536769_-	hypothetical protein	NA	NA	NA	NA
BBG01203.1\|2537089_2538367_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-83	44.6
BBG01204.1\|2538420_2539218_-	hypothetical protein	NA	NA	NA	NA
BBG01205.1\|2539238_2540249_-\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG01206.1\|2540245_2540722_-\|transposase	transposase	NA	NA	NA	NA
BBG01207.1\|2540772_2541576_-	hypothetical protein	NA	NA	NA	NA
BBG01208.1\|2541769_2542081_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.7e-15	50.0
BBG01209.1\|2542077_2542974_+\|transposase	transposase	Q6H9S6	Enterobacteria_phage	1.5e-42	40.1
BBG01210.1\|2543001_2543874_-	hypothetical protein	NA	NA	NA	NA
BBG01211.1\|2544024_2545608_-	hypothetical protein	NA	NA	NA	NA
BBG01212.1\|2545604_2546066_-	hypothetical protein	NA	NA	NA	NA
BBG01213.1\|2546204_2546492_+	ArsR family transcriptional regulator	NA	NA	NA	NA
BBG01214.1\|2546491_2547361_+	hypothetical protein	NA	NA	NA	NA
BBG01215.1\|2547417_2548806_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
BBG01216.1\|2549060_2549663_-	hypothetical protein	Q8W6R2	Burkholderia_virus	1.4e-47	58.1
BBG01217.1\|2549759_2551139_+	transcriptional regulator	A0A2L1IVA1	Escherichia_phage	5.9e-09	26.2
BBG01218.1\|2551135_2551999_+	ATPase AAA	U5N3V8	Enterobacteria_phage	3.2e-37	39.2
BBG01219.1\|2551995_2552391_+	hypothetical protein	NA	NA	NA	NA
BBG01220.1\|2552514_2552805_+	hypothetical protein	NA	NA	NA	NA
BBG01221.1\|2552878_2553943_-	magnesium transporter CorA	NA	NA	NA	NA
BBG01222.1\|2554235_2554544_-	hypothetical protein	NA	NA	NA	NA
BBG01223.1\|2554633_2555869_+	hypothetical protein	NA	NA	NA	NA
BBG01224.1\|2555846_2556506_-	hypothetical protein	Q6VY93	Streptomyces_phage	1.6e-52	50.0
BBG01225.1\|2557020_2557218_+	hypothetical protein	NA	NA	NA	NA
BBG01226.1\|2557319_2557559_-	hypothetical protein	NA	NA	NA	NA
BBG01227.1\|2557615_2558446_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2918535 : 2929747

Mycobacterium_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG01579.1\|2918535_2919453_+\|transposase	transposase	A0A1B3AZE5	Gordonia_phage	3.9e-25	31.1
BBG01580.1\|2919468_2919759_-	hypothetical protein	NA	NA	NA	NA
BBG01581.1\|2919755_2920220_-	hypothetical protein	NA	NA	NA	NA
BBG01582.1\|2920515_2920809_-	hypothetical protein	NA	NA	NA	NA
BBG01583.1\|2920805_2922092_-	replicative DNA helicase	G1BRZ3	Mycobacterium_phage	3.6e-45	34.2
BBG01584.1\|2922088_2923105_-	hypothetical protein	A0A142K8V7	Gordonia_phage	3.2e-28	49.6
BBG01585.1\|2923414_2924572_-\|transposase	transposase	NA	NA	NA	NA
BBG01586.1\|2924629_2924983_-	hypothetical protein	R4JQQ9	Mycobacterium_phage	3.6e-19	52.6
BBG01587.1\|2925068_2925515_-	hypothetical protein	A0A222Z2F1	Arthrobacter_phage	5.3e-20	45.6
BBG01588.1\|2925517_2926396_-	hypothetical protein	A0A173G9I3	Propionibacterium_phage	2.7e-68	57.9
BBG01589.1\|2926392_2927295_-	hypothetical protein	A0A249XNF0	Arthrobacter_phage	2.1e-55	40.7
BBG01590.1\|2927294_2927609_-	hypothetical protein	NA	NA	NA	NA
BBG01591.1\|2927605_2928196_-	hypothetical protein	A0A088FTU7	Mycobacterium_phage	1.6e-24	39.5
BBG01592.1\|2928311_2928452_-	hypothetical protein	NA	NA	NA	NA
BBG01593.1\|2928448_2928829_-	hypothetical protein	NA	NA	NA	NA
BBG01594.1\|2928825_2929269_-	hypothetical protein	NA	NA	NA	NA
BBG01595.1\|2929265_2929478_-	hypothetical protein	NA	NA	NA	NA
BBG01596.1\|2929477_2929747_-	hypothetical protein	A0A218M988	Mycobacterium_phage	3.2e-12	45.5

DBSCAN-SWA_6

4215172 : 4222078

Enterobacteria_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG02789.1\|4215172_4215526_-	hypothetical protein	U5N3V8	Enterobacteria_phage	8.8e-18	48.4
BBG02790.1\|4215603_4215999_-	hypothetical protein	NA	NA	NA	NA
BBG02791.1\|4215995_4216859_-	ATPase AAA	U5N3V8	Enterobacteria_phage	3.2e-37	39.2
BBG02792.1\|4216855_4218235_-	transcriptional regulator	A0A2L1IVA1	Escherichia_phage	5.9e-09	26.2
BBG02793.1\|4218364_4218757_-	hypothetical protein	NA	NA	NA	NA
BBG02794.1\|4218753_4219206_-	hypothetical protein	NA	NA	NA	NA
BBG02795.1\|4219459_4220407_-\|transposase	putative transposase for insertion sequence element IS986/IS6110	Q8W6R2	Burkholderia_virus	9.4e-75	58.5
BBG02796.1\|4220403_4220736_-	insertion element IS6110 uncharacterized 12.0 kDa protein	A0A1B3AZF8	Gordonia_phage	2.5e-22	58.0
BBG02797.1\|4220878_4222078_-	DMT family permease	B4XYR4	Lactobacillus_phage	1.9e-08	24.2

DBSCAN-SWA_7

5382881 : 5488235

Corynebacterium_phage(15.38%)

integrase,transposase,protease

attL 5379481:5379498|attR 5488608:5488625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5379481:5379498	attL	NA	NA	NA	NA
BBG03890.1\|5382881_5384324_-\|protease	protease	NA	NA	NA	NA
BBG03891.1\|5384511_5385141_+	hypothetical protein	NA	NA	NA	NA
BBG03892.1\|5385245_5385650_-	hypothetical protein	NA	NA	NA	NA
BBG03893.1\|5385693_5386977_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
BBG03894.1\|5387114_5388395_-	transcriptional regulator	NA	NA	NA	NA
BBG03895.1\|5388488_5390474_-	hypothetical protein	NA	NA	NA	NA
BBG03896.1\|5390470_5392609_-	prolyl endopeptidase	NA	NA	NA	NA
BBG03897.1\|5392934_5394083_-	oxidoreductase	NA	NA	NA	NA
BBG03898.1\|5394176_5394920_+	TetR family transcriptional regulator	NA	NA	NA	NA
BBG03899.1\|5395109_5395310_+	hypothetical protein	NA	NA	NA	NA
BBG03900.1\|5395335_5396748_-	6-hydroxy-D-nicotine oxidase	S4VXI2	Pandoravirus	1.1e-23	33.9
BBG03901.1\|5396835_5398356_-	cyclohexanone monooxygenase	NA	NA	NA	NA
BBG03902.1\|5398430_5399018_-	hypothetical protein	NA	NA	NA	NA
BBG03903.1\|5399064_5399205_-	hypothetical protein	NA	NA	NA	NA
BBG03904.1\|5399416_5400091_-	TetR family transcriptional regulator	NA	NA	NA	NA
BBG03905.1\|5400172_5400781_+	NADP oxidoreductase	NA	NA	NA	NA
BBG03906.1\|5400777_5401773_+	NADPH:quinone reductase	NA	NA	NA	NA
BBG03907.1\|5401821_5402283_+	nitroreductase	NA	NA	NA	NA
BBG03908.1\|5402491_5402695_-	hypothetical protein	NA	NA	NA	NA
BBG03909.1\|5402964_5403825_+	hydrolase	NA	NA	NA	NA
BBG03910.1\|5403975_5404668_+	hypothetical protein	A0A2P1CI94	Actinomyces_phage	4.2e-24	39.3
BBG03911.1\|5404987_5405533_+	hypothetical protein	NA	NA	NA	NA
BBG03912.1\|5405415_5405670_-	hypothetical protein	NA	NA	NA	NA
BBG03913.1\|5405690_5405951_-	hypothetical protein	NA	NA	NA	NA
BBG03914.1\|5406036_5406567_-	hypothetical protein	NA	NA	NA	NA
BBG03915.1\|5406944_5408177_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.5e-107	54.1
BBG03916.1\|5409360_5409672_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.7e-15	50.0
BBG03917.1\|5409668_5410565_+\|transposase	transposase	Q6H9S6	Enterobacteria_phage	1.5e-42	40.1
BBG03918.1\|5410639_5410855_+	hypothetical protein	NA	NA	NA	NA
BBG03919.1\|5410987_5414449_+	RNA helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	8.3e-52	29.1
BBG03920.1\|5414445_5417232_+	hypothetical protein	K9MDJ7	Sulfolobus_virus	2.0e-27	24.7
BBG03921.1\|5417236_5419138_+	hypothetical protein	NA	NA	NA	NA
BBG03922.1\|5419141_5422549_+	hypothetical protein	NA	NA	NA	NA
BBG03923.1\|5422610_5423279_+	hypothetical protein	NA	NA	NA	NA
BBG03924.1\|5423257_5427637_-	hypothetical protein	NA	NA	NA	NA
BBG03925.1\|5427869_5428751_-	hypothetical protein	NA	NA	NA	NA
BBG03926.1\|5428747_5429755_-	hypothetical protein	NA	NA	NA	NA
BBG03927.1\|5429751_5430435_-	hypothetical protein	NA	NA	NA	NA
BBG03928.1\|5430431_5431349_-	hypothetical protein	NA	NA	NA	NA
BBG03929.1\|5431345_5433256_-	hypothetical protein	NA	NA	NA	NA
BBG03930.1\|5433252_5433816_-	hypothetical protein	NA	NA	NA	NA
BBG03931.1\|5433815_5434355_-	hypothetical protein	NA	NA	NA	NA
BBG03932.1\|5434354_5434807_-	hypothetical protein	NA	NA	NA	NA
BBG03933.1\|5434914_5435289_-	hypothetical protein	NA	NA	NA	NA
BBG03934.1\|5435476_5435722_-	hypothetical protein	NA	NA	NA	NA
BBG03935.1\|5435721_5435979_-	hypothetical protein	NA	NA	NA	NA
BBG03936.1\|5436153_5436510_+	hypothetical protein	NA	NA	NA	NA
BBG03937.1\|5436620_5438084_+	hypothetical protein	NA	NA	NA	NA
BBG03938.1\|5438039_5438360_-	hypothetical protein	NA	NA	NA	NA
BBG03939.1\|5438544_5438727_+	hypothetical protein	NA	NA	NA	NA
BBG03940.1\|5439053_5439500_+	hypothetical protein	NA	NA	NA	NA
BBG03941.1\|5439547_5440141_+	hypothetical protein	NA	NA	NA	NA
BBG03942.1\|5441033_5442416_+	succinate-semialdehyde dehydrogenase [NADP(+)]	NA	NA	NA	NA
BBG03943.1\|5442375_5442765_-	hypothetical protein	NA	NA	NA	NA
BBG03944.1\|5442939_5444139_-\|transposase	transposase	NA	NA	NA	NA
BBG03945.1\|5444330_5444999_-	hypothetical protein	NA	NA	NA	NA
BBG03946.1\|5445001_5445313_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	4.7e-15	50.0
BBG03947.1\|5445309_5446206_+\|transposase	transposase	Q6H9S6	Enterobacteria_phage	1.5e-42	40.1
BBG03948.1\|5446172_5446961_-	hypothetical protein	NA	NA	NA	NA
BBG03949.1\|5447266_5448214_+	hypothetical protein	NA	NA	NA	NA
BBG03950.1\|5448301_5448931_-	hypothetical protein	NA	NA	NA	NA
BBG03951.1\|5448978_5450187_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
BBG03952.1\|5450282_5451392_-	hypothetical protein	A0A1B2AQ00	Phage_Wrath	4.3e-10	30.8
BBG03953.1\|5451944_5452163_+	hypothetical protein	NA	NA	NA	NA
BBG03954.1\|5452214_5452946_+	hypothetical protein	NA	NA	NA	NA
BBG03955.1\|5452869_5454372_-\|transposase	transposase	NA	NA	NA	NA
BBG03956.1\|5454574_5455243_+	hypothetical protein	A0A220NQR7	Corynebacterium_phage	4.2e-13	27.0
BBG03957.1\|5455483_5456017_+	acetyltransferase	NA	NA	NA	NA
BBG03958.1\|5456363_5457152_-	hypothetical protein	NA	NA	NA	NA
BBG03959.1\|5457425_5458004_-	hypothetical protein	NA	NA	NA	NA
BBG03960.1\|5458339_5459245_-	restriction endonuclease	NA	NA	NA	NA
BBG03961.1\|5459872_5460547_+	hypothetical protein	NA	NA	NA	NA
BBG03962.1\|5461766_5463206_+	hypothetical protein	NA	NA	NA	NA
BBG03963.1\|5463499_5464321_-	hypothetical protein	NA	NA	NA	NA
BBG03964.1\|5464317_5465010_-	hydrolase	NA	NA	NA	NA
BBG03965.1\|5465006_5465876_-	hypothetical protein	NA	NA	NA	NA
BBG03966.1\|5466004_5466406_+	hypothetical protein	NA	NA	NA	NA
BBG03967.1\|5466402_5466666_+	hypothetical protein	NA	NA	NA	NA
BBG03968.1\|5466762_5466942_+	hypothetical protein	NA	NA	NA	NA
BBG03969.1\|5466938_5467127_+	hypothetical protein	NA	NA	NA	NA
BBG03970.1\|5467131_5467482_+	hypothetical protein	NA	NA	NA	NA
BBG03971.1\|5467483_5467672_+	hypothetical protein	NA	NA	NA	NA
BBG03972.1\|5467769_5469209_+	hypothetical cell division FtsK/SpoIIIE protein	NA	NA	NA	NA
BBG03973.1\|5469208_5469424_+	hypothetical protein	NA	NA	NA	NA
BBG03974.1\|5469420_5470086_+	hypothetical protein	NA	NA	NA	NA
BBG03975.1\|5470175_5471531_+	replication initiation protein	NA	NA	NA	NA
BBG03976.1\|5471527_5471746_+	DNA-binding protein	NA	NA	NA	NA
BBG03977.1\|5471745_5472891_+\|integrase	putative prophage phiRv2 integrase	A0A023W687	Mycobacterium_phage	8.8e-51	36.7
BBG03978.1\|5473073_5474231_-\|transposase	transposase	NA	NA	NA	NA
BBG03979.1\|5474600_5475185_+	RNA polymerase sigma factor	NA	NA	NA	NA
BBG03980.1\|5475346_5475844_+	hypothetical protein	NA	NA	NA	NA
BBG03981.1\|5475882_5476962_-	hypothetical protein	NA	NA	NA	NA
BBG03982.1\|5477127_5477739_-	class F sortase	NA	NA	NA	NA
BBG03983.1\|5477725_5478424_-	hypothetical protein	NA	NA	NA	NA
BBG03984.1\|5478513_5479398_-	hypothetical protein	NA	NA	NA	NA
BBG03985.1\|5479420_5481160_-	putative sulfite reductase	NA	NA	NA	NA
BBG03986.1\|5481156_5486427_-	glutamate synthase	NA	NA	NA	NA
BBG03987.1\|5486781_5487000_+	cold-shock protein	NA	NA	NA	NA
BBG03988.1\|5487008_5488235_-\|integrase	site-specific integrase	G9FGY1	Rhodococcus_phage	1.6e-26	29.1
5488608:5488625	attR	NA	NA	NA	NA

DBSCAN-SWA_8

7058793 : 7077092

Mycobacterium_phage(33.33%)

integrase,transposase

attL 7048285:7048300|attR 7062345:7062360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
7048285:7048300	attL	NA	NA	NA	NA
BBG05451.1\|7058793_7059966_-\|integrase	putative prophage phiRv2 integrase	A0A249XT84	Mycobacterium_phage	3.0e-54	39.5
BBG05452.1\|7059965_7060250_-	hypothetical protein	NA	NA	NA	NA
BBG05453.1\|7060239_7060821_+	hypothetical protein	NA	NA	NA	NA
BBG05454.1\|7060950_7062453_+\|transposase	transposase	NA	NA	NA	NA
7062345:7062360	attR	NA	NA	NA	NA
BBG05455.1\|7062568_7063204_+	hypothetical protein	NA	NA	NA	NA
BBG05456.1\|7063395_7064664_-\|transposase	transposase	NA	NA	NA	NA
BBG05457.1\|7064723_7065509_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
BBG05458.1\|7065601_7066774_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
BBG05459.1\|7066810_7068007_-	CoA transferase	NA	NA	NA	NA
BBG05460.1\|7068371_7069010_-	DNA-binding response regulator	NA	NA	NA	NA
BBG05461.1\|7069006_7070629_-	hypothetical protein	NA	NA	NA	NA
BBG05462.1\|7070794_7071805_-\|transposase	transposase	U5P429	Shigella_phage	1.3e-08	26.0
BBG05463.1\|7071801_7072278_-\|transposase	transposase	NA	NA	NA	NA
BBG05464.1\|7072696_7073320_+	TrpR-binding protein WrbA	NA	NA	NA	NA
BBG05465.1\|7073373_7073598_+	hypothetical protein	NA	NA	NA	NA
BBG05466.1\|7073594_7075025_+	amidase	NA	NA	NA	NA
BBG05467.1\|7075077_7076124_+	pyrimidine monooxygenase RutA	NA	NA	NA	NA
BBG05468.1\|7076195_7077092_-\|transposase	putative transposase for insertion sequence element IS986/IS6110	Q6H9S6	Enterobacteria_phage	1.5e-42	39.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP018921

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. AP018920

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection