CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP019305	Staphylococcus aureus TUM9458 DNA, complete genome	12 crisprs	NA	7	1	0	0

Cas Category Instructions

Results visualization

1. AP019305

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CRISPR-Cas detection and classification

Crispr_ID: AP019305_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_1

757124-757205

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_1

>merge|AP019305|1|757124-757205|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>AP019305|1|1|757124-757205|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

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Crispr_ID: AP019305_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_2

775434-775522

Orphan

Consensus_repeat	Method
GTTTTTGACTGACTTCTCAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_2

>merge|AP019305|2|775434-775522|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCAATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAGTTTTTCGACTGACTTCTCAATCA

>AP019305|2|2|775434-775522|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCA	ATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAG
TTTTTCGACTGACTTCTCAATCA

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Crispr_ID: AP019305_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_3

906213-906293

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_3

>merge|AP019305|3|906213-906293|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>AP019305|3|3|906213-906293|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

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Crispr_ID: AP019305_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_4

918534-918619

Orphan

Consensus_repeat	Method
CCAACTGATTTTTGCGTATCATTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_4

>merge|AP019305|4|918534-918619|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGTTTGCATATCTTTAGCTTTATTGTTTGCAACTGGGCCAACTGATTTTTGCGTATCATTAGT

>AP019305|4|4|918534-918619|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGT	TTGCATATCTTTAGCTTTATTGTTTGCAACTGGG
CCAACTGATTTTTGCGTATCATTAGT

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Crispr_ID: AP019305_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_5

1027152-1027232

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_5

>merge|AP019305|5|1027152-1027232|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>AP019305|5|5|1027152-1027232|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

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Crispr_ID: AP019305_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_6

1636032-1636116

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_6

>merge|AP019305|6|1636032-1636116|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>AP019305|6|6|1636032-1636116|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

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Crispr_ID: AP019305_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_7

1879173-1879274

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_7

>merge|AP019305|7|1879173-1879274|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>AP019305|7|7|1879173-1879274|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: AP019305_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_8

2263789-2263871

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_8

>merge|AP019305|8|2263789-2263871|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>AP019305|8|8|2263789-2263871|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

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Crispr_ID: AP019305_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_9

2304736-2304814

Orphan

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_9

>merge|AP019305|9|2304736-2304814|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>AP019305|9|9|2304736-2304814|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

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Crispr_ID: AP019305_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_10

2310194-2310284

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_10

>merge|AP019305|10|2310194-2310284|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTG

>AP019305|10|10|2310194-2310284|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CCTGTAGAATTTCTTTTCGAAATTC
TCTGTGTTGGGGCCCACACCCCAACTTGCATTG

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Crispr_ID: AP019305_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_11

2318454-2318533

Orphan

Consensus_repeat	Method
CAGCTTCTGTGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_11

>merge|AP019305|11|2318454-2318533|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCACC

>AP019305|11|11|2318454-2318533|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTGTGTTGGGGCCCCACC

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Crispr_ID: AP019305_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019305_12

2370436-2370517

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019305_12

>merge|AP019305|12|2370436-2370517|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>AP019305|12|12|2370436-2370517|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP019305_1	1.1\|757148\|34\|AP019305\|CRISPRCasFinder	757148-757181	34	AP019305.1	2304735-2304768	0	1.0
AP019305_1	1.1\|757148\|34\|AP019305\|CRISPRCasFinder	757148-757181	34	AP019305.1	2684105-2684138	0	1.0
AP019305_6	6.1\|1636058\|33\|AP019305\|CRISPRCasFinder	1636058-1636090	33	AP019305.1	2899949-2899981	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	257384-257408	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	274313-274337	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	646307-646331	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	1636016-1636040	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	1761550-1761574	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	2134724-2134748	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	2262830-2262854	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	2370509-2370533	0	1.0
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	2899849-2899873	0	1.0
AP019305_11	11.1\|2318478\|32\|AP019305\|CRISPRCasFinder	2318478-2318509	32	AP019305.1	274375-274406	0	1.0
AP019305_11	11.1\|2318478\|32\|AP019305\|CRISPRCasFinder	2318478-2318509	32	AP019305.1	801032-801063	0	1.0
AP019305_11	11.1\|2318478\|32\|AP019305\|CRISPRCasFinder	2318478-2318509	32	AP019305.1	1197318-1197349	0	1.0
AP019305_11	11.1\|2318478\|32\|AP019305\|CRISPRCasFinder	2318478-2318509	32	AP019305.1	2370766-2370797	0	1.0
AP019305_1	1.1\|757148\|34\|AP019305\|CRISPRCasFinder	757148-757181	34	AP019305.1	389880-389913	1	0.971
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	2318428-2318458	1	0.968
AP019305_9	9.1\|2304760\|31\|AP019305\|CRISPRCasFinder	2304760-2304790	31	AP019305.1	295520-295550	1	0.968
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	295375-295399	1	0.96
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	295608-295632	1	0.96
AP019305_10	10.1\|2310227\|25\|AP019305\|CRISPRCasFinder	2310227-2310251	25	AP019305.1	2441617-2441641	1	0.96
AP019305_11	11.1\|2318478\|32\|AP019305\|CRISPRCasFinder	2318478-2318509	32	AP019305.1	2900026-2900057	1	0.969
AP019305_12	12.1\|2370460\|34\|AP019305\|CRISPRCasFinder	2370460-2370493	34	AP019305.1	2899948-2899981	1	0.971
AP019305_1	1.1\|757148\|34\|AP019305\|CRISPRCasFinder	757148-757181	34	AP019305.1	1479904-1479937	2	0.941
AP019305_1	1.1\|757148\|34\|AP019305\|CRISPRCasFinder	757148-757181	34	AP019305.1	2904322-2904355	2	0.941
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	28280-28310	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	274370-274400	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	644959-644989	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	1016376-1016406	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	1197324-1197354	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	1837850-1837880	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	2134782-2134812	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	2370772-2370802	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	2542411-2542441	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	2691038-2691068	2	0.935
AP019305_5	5.1\|1027177\|31\|AP019305\|CRISPRCasFinder	1027177-1027207	31	AP019305.1	2899907-2899937	2	0.935
AP019305_6	6.1\|1636058\|33\|AP019305\|CRISPRCasFinder	1636058-1636090	33	AP019305.1	28236-28268	2	0.939

1. spacer 1.1|757148|34|AP019305|CRISPRCasFinder matches to position: 2304735-2304768, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

2. spacer 1.1|757148|34|AP019305|CRISPRCasFinder matches to position: 2684105-2684138, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 6.1|1636058|33|AP019305|CRISPRCasFinder matches to position: 2899949-2899981, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

4. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 257384-257408, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 274313-274337, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 646307-646331, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 1636016-1636040, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 1761550-1761574, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 2134724-2134748, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 2262830-2262854, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

11. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 2370509-2370533, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

12. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 2899849-2899873, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

13. spacer 11.1|2318478|32|AP019305|CRISPRCasFinder matches to position: 274375-274406, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

14. spacer 11.1|2318478|32|AP019305|CRISPRCasFinder matches to position: 801032-801063, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

15. spacer 11.1|2318478|32|AP019305|CRISPRCasFinder matches to position: 1197318-1197349, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

16. spacer 11.1|2318478|32|AP019305|CRISPRCasFinder matches to position: 2370766-2370797, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

17. spacer 1.1|757148|34|AP019305|CRISPRCasFinder matches to position: 389880-389913, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

18. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 2318428-2318458, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

19. spacer 9.1|2304760|31|AP019305|CRISPRCasFinder matches to position: 295520-295550, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

20. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 295375-295399, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

21. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 295608-295632, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

22. spacer 10.1|2310227|25|AP019305|CRISPRCasFinder matches to position: 2441617-2441641, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

23. spacer 11.1|2318478|32|AP019305|CRISPRCasFinder matches to position: 2900026-2900057, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

24. spacer 12.1|2370460|34|AP019305|CRISPRCasFinder matches to position: 2899948-2899981, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

25. spacer 1.1|757148|34|AP019305|CRISPRCasFinder matches to position: 1479904-1479937, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

26. spacer 1.1|757148|34|AP019305|CRISPRCasFinder matches to position: 2904322-2904355, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

27. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 28280-28310, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 274370-274400, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

29. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 644959-644989, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 1016376-1016406, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 1197324-1197354, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

32. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 1837850-1837880, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

33. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 2134782-2134812, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

34. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 2370772-2370802, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

35. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 2542411-2542441, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

36. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 2691038-2691068, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

37. spacer 5.1|1027177|31|AP019305|CRISPRCasFinder matches to position: 2899907-2899937, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

38. spacer 6.1|1636058|33|AP019305|CRISPRCasFinder matches to position: 28236-28268, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP019305_4	4.1\|918560\|34\|AP019305\|CRISPRCasFinder	918560-918593	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
AP019305_4	4.1\|918560\|34\|AP019305\|CRISPRCasFinder	918560-918593	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 4.1|918560|34|AP019305|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 4.1|918560|34|AP019305|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage