CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP019306	Staphylococcus aureus TUM9463 DNA, complete genome	13 crisprs	NA	9	1	0	0

Cas Category Instructions

Results visualization

1. AP019306

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CRISPR-Cas detection and classification

Crispr_ID: AP019306_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_1

754732-754813

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_1

>merge|AP019306|1|754732-754813|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>AP019306|1|1|754732-754813|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

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Crispr_ID: AP019306_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_2

769851-769939

Orphan

Consensus_repeat	Method
GTTTTTGACTGACTTCTCAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_2

>merge|AP019306|2|769851-769939|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCAATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAGTTTTTCGACTGACTTCTCAATCA

>AP019306|2|2|769851-769939|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCA	ATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAG
TTTTTCGACTGACTTCTCAATCA

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Crispr_ID: AP019306_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_3

900625-900705

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_3

>merge|AP019306|3|900625-900705|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>AP019306|3|3|900625-900705|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

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Crispr_ID: AP019306_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_4

912946-913031

Orphan

Consensus_repeat	Method
CCAACTGATTTTTGCGTATCATTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_4

>merge|AP019306|4|912946-913031|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGTTTGCATATCTTTAGCTTTATTGTTTGCAACTGGGCCAACTGATTTTTGCGTATCATTAGT

>AP019306|4|4|912946-913031|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGT	TTGCATATCTTTAGCTTTATTGTTTGCAACTGGG
CCAACTGATTTTTGCGTATCATTAGT

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Crispr_ID: AP019306_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_5

1021564-1021644

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_5

>merge|AP019306|5|1021564-1021644|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>AP019306|5|5|1021564-1021644|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

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Crispr_ID: AP019306_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_6

1622821-1622954

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of AP019306_6

>merge|AP019306|6|1622821-1622954|PILER-CR
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>AP019306|6|1|1622821-1622954|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: AP019306_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_7

1750524-1750608

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_7

>merge|AP019306|7|1750524-1750608|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>AP019306|7|6|1750524-1750608|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

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Crispr_ID: AP019306_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_8

1991533-1991634

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_8

>merge|AP019306|8|1991533-1991634|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>AP019306|8|7|1991533-1991634|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: AP019306_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_9

2372951-2373033

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_9

>merge|AP019306|9|2372951-2373033|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>AP019306|9|8|2372951-2373033|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

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Crispr_ID: AP019306_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_10

2413898-2413976

Orphan

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_10

>merge|AP019306|10|2413898-2413976|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>AP019306|10|9|2413898-2413976|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

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Crispr_ID: AP019306_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_11

2419356-2419446

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_11

>merge|AP019306|11|2419356-2419446|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTG

>AP019306|11|10|2419356-2419446|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CCTGTAGAATTTCTTTTCGAAATTC
TCTGTGTTGGGGCCCACACCCCAACTTGCATTG

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Crispr_ID: AP019306_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_12

2426550-2426629

Orphan

Consensus_repeat	Method
CAGCTTCTGTGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_12

>merge|AP019306|12|2426550-2426629|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCACC

>AP019306|12|11|2426550-2426629|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTGTGTTGGGGCCCCACC

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Crispr_ID: AP019306_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019306_13

2478532-2478613

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019306_13

>merge|AP019306|13|2478532-2478613|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>AP019306|13|12|2478532-2478613|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP019306_1	1.1\|754756\|34\|AP019306\|CRISPRCasFinder	754756-754789	34	AP019306.1	2413897-2413930	0	1.0
AP019306_1	1.1\|754756\|34\|AP019306\|CRISPRCasFinder	754756-754789	34	AP019306.1	2790069-2790102	0	1.0
AP019306_7	7.1\|1750550\|33\|AP019306\|CRISPRCasFinder	1750550-1750582	33	AP019306.1	3005113-3005145	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	256318-256342	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	273247-273271	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	643909-643933	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	1750508-1750532	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	1874976-1875000	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	2244952-2244976	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	2371992-2372016	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	2478605-2478629	0	1.0
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	3005013-3005037	0	1.0
AP019306_12	12.1\|2426574\|32\|AP019306\|CRISPRCasFinder	2426574-2426605	32	AP019306.1	273309-273340	0	1.0
AP019306_12	12.1\|2426574\|32\|AP019306\|CRISPRCasFinder	2426574-2426605	32	AP019306.1	795449-795480	0	1.0
AP019306_12	12.1\|2426574\|32\|AP019306\|CRISPRCasFinder	2426574-2426605	32	AP019306.1	1190664-1190695	0	1.0
AP019306_12	12.1\|2426574\|32\|AP019306\|CRISPRCasFinder	2426574-2426605	32	AP019306.1	1243066-1243097	0	1.0
AP019306_12	12.1\|2426574\|32\|AP019306\|CRISPRCasFinder	2426574-2426605	32	AP019306.1	2478862-2478893	0	1.0
AP019306_1	1.1\|754756\|34\|AP019306\|CRISPRCasFinder	754756-754789	34	AP019306.1	388814-388847	1	0.971
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	2426524-2426554	1	0.968
AP019306_10	10.1\|2413922\|31\|AP019306\|CRISPRCasFinder	2413922-2413952	31	AP019306.1	294454-294484	1	0.968
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	294309-294333	1	0.96
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	294542-294566	1	0.96
AP019306_11	11.1\|2419389\|25\|AP019306\|CRISPRCasFinder	2419389-2419413	25	AP019306.1	2548647-2548671	1	0.96
AP019306_12	12.1\|2426574\|32\|AP019306\|CRISPRCasFinder	2426574-2426605	32	AP019306.1	3005190-3005221	1	0.969
AP019306_13	13.1\|2478556\|34\|AP019306\|CRISPRCasFinder	2478556-2478589	34	AP019306.1	3005112-3005145	1	0.971
AP019306_1	1.1\|754756\|34\|AP019306\|CRISPRCasFinder	754756-754789	34	AP019306.1	1420679-1420712	2	0.941
AP019306_1	1.1\|754756\|34\|AP019306\|CRISPRCasFinder	754756-754789	34	AP019306.1	3009486-3009519	2	0.941
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	27214-27244	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	273304-273334	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	642561-642591	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	1010788-1010818	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	1190670-1190700	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	1243061-1243091	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	1951276-1951306	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	2245010-2245040	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	2478868-2478898	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	2648375-2648405	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	2797002-2797032	2	0.935
AP019306_5	5.1\|1021589\|31\|AP019306\|CRISPRCasFinder	1021589-1021619	31	AP019306.1	3005071-3005101	2	0.935
AP019306_6	6.1\|1622838\|46\|AP019306\|PILER-CR	1622838-1622883	46	AP019306.1	1617668-1617713	2	0.957
AP019306_6	6.2\|1622901\|37\|AP019306\|PILER-CR	1622901-1622937	37	AP019306.1	1617731-1617767	2	0.946
AP019306_7	7.1\|1750550\|33\|AP019306\|CRISPRCasFinder	1750550-1750582	33	AP019306.1	27170-27202	2	0.939

1. spacer 1.1|754756|34|AP019306|CRISPRCasFinder matches to position: 2413897-2413930, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

2. spacer 1.1|754756|34|AP019306|CRISPRCasFinder matches to position: 2790069-2790102, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 7.1|1750550|33|AP019306|CRISPRCasFinder matches to position: 3005113-3005145, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

4. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 256318-256342, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 273247-273271, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 643909-643933, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 1750508-1750532, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 1874976-1875000, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 2244952-2244976, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 2371992-2372016, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

11. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 2478605-2478629, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

12. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 3005013-3005037, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

13. spacer 12.1|2426574|32|AP019306|CRISPRCasFinder matches to position: 273309-273340, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

14. spacer 12.1|2426574|32|AP019306|CRISPRCasFinder matches to position: 795449-795480, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

15. spacer 12.1|2426574|32|AP019306|CRISPRCasFinder matches to position: 1190664-1190695, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

16. spacer 12.1|2426574|32|AP019306|CRISPRCasFinder matches to position: 1243066-1243097, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

17. spacer 12.1|2426574|32|AP019306|CRISPRCasFinder matches to position: 2478862-2478893, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

18. spacer 1.1|754756|34|AP019306|CRISPRCasFinder matches to position: 388814-388847, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

19. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 2426524-2426554, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

20. spacer 10.1|2413922|31|AP019306|CRISPRCasFinder matches to position: 294454-294484, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

21. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 294309-294333, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

22. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 294542-294566, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

23. spacer 11.1|2419389|25|AP019306|CRISPRCasFinder matches to position: 2548647-2548671, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

24. spacer 12.1|2426574|32|AP019306|CRISPRCasFinder matches to position: 3005190-3005221, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

25. spacer 13.1|2478556|34|AP019306|CRISPRCasFinder matches to position: 3005112-3005145, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

26. spacer 1.1|754756|34|AP019306|CRISPRCasFinder matches to position: 1420679-1420712, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

27. spacer 1.1|754756|34|AP019306|CRISPRCasFinder matches to position: 3009486-3009519, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

28. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 27214-27244, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 273304-273334, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

30. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 642561-642591, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 1010788-1010818, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

32. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 1190670-1190700, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

33. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 1243061-1243091, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

34. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 1951276-1951306, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

35. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 2245010-2245040, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

36. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 2478868-2478898, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

37. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 2648375-2648405, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

38. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 2797002-2797032, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

39. spacer 5.1|1021589|31|AP019306|CRISPRCasFinder matches to position: 3005071-3005101, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

40. spacer 6.1|1622838|46|AP019306|PILER-CR matches to position: 1617668-1617713, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

41. spacer 6.2|1622901|37|AP019306|PILER-CR matches to position: 1617731-1617767, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

42. spacer 7.1|1750550|33|AP019306|CRISPRCasFinder matches to position: 27170-27202, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP019306_4	4.1\|912972\|34\|AP019306\|CRISPRCasFinder	912972-913005	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
AP019306_4	4.1\|912972\|34\|AP019306\|CRISPRCasFinder	912972-913005	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 4.1|912972|34|AP019306|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 4.1|912972|34|AP019306|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage