CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029601	Streptomyces sp. WAC 01438 chromosome, complete genome	9 crisprs	csa3,cas10,csm3gr7,csx19,cas6,cas1,cas2,cas3,DEDDh,WYL,DinG,Cas9_archaeal,c2c9_V-U4,cas4	0	9	2	0
CP029602	Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029601_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_1

587264-587516

TypeIII

Consensus_repeat	Method
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	PILER-CR
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	CRISPRCasFinder
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	CRT

3 spacers

cas6,csm3gr7,csx19,cas10,cas1,cas2

The CRISPR arrays of CP029601_1

>merge|CP029601|1|587264-587516|PILER-CR,CRISPRCasFinder,CRT
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAACGCGCATTCCCTCGTCACGAGTGTCGAACGGCATGGTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAACTCGTCACCTCTGCCGCTGACCAGGGATCCTGAGCCGTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAACCCAGTATCAGCACTCCCTGACCGACGGAGACGACGAGTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC

>CP029601|1|1|587264-587516|PILER-CR
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	GCGCATTCCCTCGTCACGAGTGTCGAACGGCATG
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	TCGTCACCTCTGCCGCTGACCAGGGATCCTGAGCC
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	CCAGTATCAGCACTCCCTGACCGACGGAGACGACGA
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC

>CP029601|1|1|587264-587516|CRISPRCasFinder
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	GCGCATTCCCTCGTCACGAGTGTCGAACGGCATG
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	TCGTCACCTCTGCCGCTGACCAGGGATCCTGAGCC
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	CCAGTATCAGCACTCCCTGACCGACGGAGACGACGA
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC

>CP029601|1|1|587264-587516|CRT
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	GCGCATTCCCTCGTCACGAGTGTCGAACGGCATG
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	TCGTCACCTCTGCCGCTGACCAGGGATCCTGAGCC
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC	CCAGTATCAGCACTCCCTGACCGACGGAGACGACGA
GTTCCGCAGGAACTAAAAGCCCGCAGGGCATAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM58600.1\|599952_600765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|252734
CP029601.1\|AZM58596.1\|594017_595967_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236054
CP029601.1\|AZM58589.1\|582909_585261_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP029601.1\|AZM58595.1\|593271_594021_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
CP029601.1\|AZM64343.1\|582110_582974_+\|TIGR03984-family-CRISPR-associated-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
CP029601.1\|AZM58585.1\|575035_576658_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP029601.1\|AZM58599.1\|597814_599956_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
CP029601.1\|AZM58591.1\|586266_587025_+\|hypothetical-protein	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
CP029601.1\|AZM58588.1\|580821_582402_+\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
CP029601.1\|AZM58584.1\|574014_574506_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319805
CP029601.1\|AZM58590.1\|585378_586254_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375596
CP029601.1\|AZM58597.1\|595968_596640_-\|succinate-dehydrogenase	unknown	unknown	gnl\|CDD\|131101
CP029601.1\|AZM58598.1\|596760_597645_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
CP029601.1\|AZM58587.1\|578528_580820_+\|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
CP029601.1\|AZM58593.1\|589473_589758_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP029601.1\|AZM58586.1\|576867_578532_+\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|224272
CP029601.1\|AZM58594.1\|591979_593005_-\|photosystem-reaction-center-subunit-H	unknown	unknown	gnl\|CDD\|378207
CP029601.1\|AZM64344.1\|590914_591934_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
CP029601.1\|AZM58583.1\|573785_574001_+\|dodecin-family-protein	unknown	unknown	gnl\|CDD\|377810
CP029601.1\|AZM58592.1\|587783_589466_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM58600.1\|599952_600765_-\|hypothetical-protein	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	1.05218e-125
CP029601.1\|AZM58596.1\|594017_595967_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
CP029601.1\|AZM58589.1\|582909_585261_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.94498e-88
CP029601.1\|AZM58595.1\|593271_594021_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
CP029601.1\|AZM64343.1\|582110_582974_+\|TIGR03984-family-CRISPR-associated-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	6.03822e-24
CP029601.1\|AZM58585.1\|575035_576658_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.90423e-33
CP029601.1\|AZM58599.1\|597814_599956_-\|GGDEF-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	8.49677e-111
CP029601.1\|AZM58591.1\|586266_587025_+\|hypothetical-protein	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.76315e-16
CP029601.1\|AZM58588.1\|580821_582402_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.85076e-16
CP029601.1\|AZM58584.1\|574014_574506_-\|hypothetical-protein	gnl\|CDD\|319805	cd07502, HAD_PNKP-C, C-terminal phosphatase domain of T4 polynucleotide kinase/phosphatase (PNKP) and related phosphatases. This family includes the C-terminal domain of the bifunctional enzyme T4 polynucleotide kinase/phosphatase, PNKP. The PNKP phosphatase domain can catalyze the hydrolytic removal of the 3'-phosphoryl of DNA, RNA and deoxynucleoside 3'-monophosphates. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.53153e-53
CP029601.1\|AZM58590.1\|585378_586254_+\|hypothetical-protein	gnl\|CDD\|375596	pfam18159, S_4TM, SMODS-associating 4TM effector domain. Predicted pore-forming effector domain found in conserved genome contexts with diverse nucleotide synthetases including the SMODS synthetases. Predicted to function as a pore-forming effector in a class of conflict systems reliant on the production of second messenger nucleotide or nucleotide derivatives. S-4TM domains are predicted to initiate cell suicide responses upon their activation.	4.0382e-64
CP029601.1\|AZM58597.1\|595968_596640_-\|succinate-dehydrogenase	gnl\|CDD\|131101	TIGR02046, Succinate_dehydrogenase_cytochrome_b558_subunit, succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. This family consists of the succinate dehydrogenase subunit C of Bacillus subtilis, designated cytochrome b-558, and related sequences that include a fumarate reductase subunit C. This subfamily is only weakly similar to the main group of succinate dehydrogenase cytochrome b subunits described by pfam01127, so that some members score above the gathering threshold and some do not. [Energy metabolism, TCA cycle].	1.65575e-80
CP029601.1\|AZM58598.1\|596760_597645_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.54713e-52
CP029601.1\|AZM58587.1\|578528_580820_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	4.26267e-16
CP029601.1\|AZM58593.1\|589473_589758_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.43498e-20
CP029601.1\|AZM58586.1\|576867_578532_+\|hypothetical-protein	gnl\|CDD\|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	1.72785e-05
CP029601.1\|AZM58594.1\|591979_593005_-\|photosystem-reaction-center-subunit-H	gnl\|CDD\|378207	pfam09557, DUF2382, Domain of unknown function (DUF2382). This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	1.04053e-32
CP029601.1\|AZM64344.1\|590914_591934_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	5.48899e-139
CP029601.1\|AZM58583.1\|573785_574001_+\|dodecin-family-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.01926e-32
CP029601.1\|AZM58592.1\|587783_589466_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	8.51019e-107

>CP029601.1|AZM58591.1|586266_587025_+|hypothetical-protein
MPTRWTLRLHSDPTPRYATPQQLHGLACALFEGAGADHTGQSKSFTTSPLLAGGQPSARFAELCLGWLDDTRVPAVEALTGRNIRLGAQLLTVHDVRREAAPYQALLAAPADLNRIEMTFVTPTHFNRSDRYIPLPDPELVYQSLLRRWNRFAPEPIADSLAEELISAVVLAEHDIASCSVDLGPGRRIGFTGRSVFTLLNRAGDEAHRIFTALSRFASVAGVGAQTTHGQGYVRITPARTRTPGKGPVTHA
>CP029601.1|AZM58590.1|585378_586254_+|hypothetical-protein
MSARAAARAAYSAVGRIRFLRTTGTVGLAVAAPLVSVLWPSTTGITASVAAVWLVAGRTLMKNWERSWQEKGRKFQEYYDSRLFRIDWNTALAGRIDAVREEMAACRPRRDLPRDRDWYESVPAIPWPYDVLACQMQNALWGRRNHRAYANLLWGLFAATCVAVALVGALERLELEDLLLKLFLPVAPALVDLSELPREHRGAEQAKEKTGDTIADLRDQCEAGRPVTAEDCREIQDAIYHLRGINPAVPSWFHRRLRRKVTAANEAAMQTLKEQIEAMAARHGTRPQQQP
>CP029601.1|AZM58589.1|582909_585261_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MRNDSCASNRHRPRNPGVGVADEVRSGRLAWNSENDKLYVVQADGRRKGFKREYALVPELRDLTGPQLDGLSVDYAWRKGEPRQIRPAGTVVQNTVSPNQFINPYTFLPATPRDTTADELGDRAPTGHDRLHWDHWTGRLRVRMTVVTPLLLLDPSRAERETKDGKPTGHATYPILRRNGRAYVPATSVKGMLRAAYEAVTNSRMGVFTSHDRQLAYRMPTAESRHMVPARISDDGKSVTLLKAARLPRYTRGAVTYKDGTPPRHGDEVEAEVEQRSGMNWTVRSIARAPQPPQMPSEPSHRLSSHNPSPSGNRRTIRGWVCVTNQNMLNKRHERVFFSEAKIPTNHPLTGELIEQWGNTIRDYRGAHRHEEIHERRTAGGKIAPPDQYLGSEPGATAWSRHFYDDAYLDLTPGTLCYAHMDKSSRRILGLYPVMIARSLFRKPPEALLDSSLKPARSIDELSPADRVFGWVAPAGPGAHRGQLRIGPVEDGESVHTEEFAGAGVSLAILGQPKPQQGRFYLGQAPDGTQPLPAQGPKTDWYGPGTALRGRKAYWHHRGLHADHWTDPEGDRTQQVDGTGRFQEYRRPDKDGGPQRDKQNRSVRGWIRPGSTFTFTIDVVNLSDVELGALIWLLQLPEGHHHRLGYGKPLGFGSVRLELLTENGCDLRTGETWATSYRDLSPDGDREPDDTSHKIDLVRSKFVAESEDGGSSHLRAFLAVASGRDDAPVHYPRARPKGTEKNPSVPPHPEGKSYAWFTSNDRENEPKSLPAWDNPRLPILPER
>CP029601.1|AZM64343.1|582110_582974_+|TIGR03984-family-CRISPR-associated-protein
MAADPPHGRPRTSQTAARRPPGRGDSPVDARASRSDSRPDSDRLRHQPRSGRHRRRPRPAHLPPREQAGGTDRLPQQRGRGRSLQSLAHLLGRGAVVITLYSRAASDISLSTALDAVTGLDGAVAFLSTPREHITARVRDGRCHTRDGVRSLDTVFEARIFDEDKEVRWLSTSGHQGRAVALSEEPGLLPDSFPDRLADLSAAEAIESHYLLWGQALPGEGEWTTLHTPQIGTLHVPFPAPEPRRRLRLAAREYVCAEPEHGNAYVGEERLVRIEQAPAEESGSGRG
>CP029601.1|AZM58588.1|580821_582402_+|hypothetical-protein
MTVTTRPMTRRLRMRGWLITRSPLHVGGAGGDPNGVLHAAVDGRGRLYVPGTGITGALRTLTHPEYGSGDEEADRTADLLWGYATPRTQEGAVSRIVVRDALITTGKQLDSDGLPLQTLNPARLEARHSVGIDRHSGTAAHGFLHGRVVVPTDSFLRLELDLNSSDDSIDDDRRRMRQLLRLLSEEGLQLGAAKTRGLGRVQLLAAETDVREEDFSSAAGLLAALEGNGPAWCSEDWAEEPLPARESLSIRIDWRPTAPVMVRSATDGFAVDALPLASAVTPDAVSLVLPGTSLKGIMRSCAERIERTVRRLDAPAAAPGQSAPERSAAFREQLDQLPAVRALFGSAPLRGSDRGRGVGAVTVDDCYAKETMPAELWAQAHGPEAADTASPVTPLRDYRLERADHVAVDRWTGGAADGRLYSVLEPHGVEWQPIRLTVDLARLKRQHADHRAAGTALLMLVLRDLTAGRIPIGYATNRGLGDIAVDRVLLTFRPGNKPVELTDYLNSEDAAGLSKAWRTYLDEEPS
>CP029601.1|AZM58587.1|578528_580820_+|hypothetical-protein
MTRLRLSVTMLSDWHVGSGTGRHGFLDRAVQRDPDGLPFVPAKTLAGVWRDGCETVVYALDGGRRGPWHSWLDWLFGTQPALEARGVIEGTHHGPPRPAALHLDSLHFPAVVTAALREKPLLRQSATFVKPGVAIDRETGSAADGMLRFEEMARGGAVLVGTAEIADSWRLTDDQVHCATALLHAAARLVEGIGGKRRRGAGRCRLDVGGLAADWRWLQGRDHPPQVPEPTPAPVVAPSAGRTVVGWEIADLRLVLRRPLIAHEQTMGNSVRSAEFVPGRTLLPAVLQRLNAPEAAAAARAGDLIVTDATIEIDGHPGRPAPLALVHPKGRPERAYNVMCETMAAGTQAVPYEGYYVGEYELGRLLRLAVCPRSEHTHNTIDDRFQRPVEAVGGPYTYQAIAAGTVLRAQVRVPSGLLGAGWQDLLAGTWRVGRASKDGYGLTDVSSAAAEPRTSSAPPDGRLRVWLLSDTLVTDERLRPSTDPIHLAAELGRALDVELRPVSDNGSGGAVDRASETRRSDPWHSRWSLPRASLLALRAGSCLSFDVVQGTVTAAAVQQVELAGVGLRRAEGFGQVRIADPILHSAFDGACDVTSVDASSVQPVSADSPAPEDVSELVRVWEEAAWRGEIQRASETAARERRHEILGNGYEKVPSSQLGALRTLVTGLDDPSSDSATEWLKRVETVRTARQAPWPDDVVQHLRSVLTEPHTVWQLLRLPEDSLVVEPGGAARLRRSLWAEAVRTLVEDCLTAHARSADAREGG
>CP029601.1|AZM58586.1|576867_578532_+|hypothetical-protein
MVPTTRRRFAAECGALRWLESGGGSVQVHLVVFEAWNISRFIFVTNKRREIAGASELITYLERTWVRTAVEDLFPGFEDRWRIETEPVEILETGAGTAKVLVRDQTSARNLVRAVTTAALRDAPGLEVCGVVGEPFDWSAEGALHASLGRTAERLAPVRTALPGPDARFLRLPVVAGCASTGLPAESMVWLPDGSEPRSAESRAKWRAYGRQTEGDGLQRLAKLAGVTTRELAQVVDHLNDHAEWVGVVYADGNGLGPVFGNFEACVEDRSNRQYADTLRTFSATLQSCARDAFADAVHALEGLGARLEHGPVPLLPLILGGDDLVALCSGDWALPFTEAYLRAFEKRTAMTRDLVGPLSRQGKRGLSACAGVAIVKPHFPFSASRDLAYDLMLEAKHVKNAVEGPCSALSFHVLYDSSEADLDRIRARGTGPDAAHINAQPYVVSDVPEECQWTRGRRWGDLTRRVTALAARDDEGERHLPASQLHDLRQALFLGRSVADARFGSLLPRYPDLEQLDEGQGSLFWRETGSGSEITGFLDALDAAAFLVEGRTP
>CP029601.1|AZM58585.1|575035_576658_+|ISL3-family-transposase
MGDVLLQDLWFHQVEGVVIESVVPDGELVVVRARASAERAVCPTCGTASARVHSRYVRRLADSAVGGRPVVVELQVRRFRCRERSCSQATFAEQVDGLTFRHGRRSTGLQTVLQQVAVMLAGRAGARLADTLAVRASRSTLLRLIRRLPEPDVHTPRVLGVDEFALRKGHNYGTILVDIETRTPVDLLPDREISTVARWLTGHPGVEVICRDRSAAYAEAGRLGAPDAVHVADRWHIWKNLVEAVEKTVIQHRAPLREPEEPGPVRPAPAEQITDLASRSAGEPRQSGRLSDRVREQHAAVHVLLDEGLGLRPIARRLGLARNTVRRLAHAATADELLVGRWTGRSSILDPYKPYLHQRWTEGCTVARRLFEELRERGYPGGESVVKKYVQRLREALPHDDPPRKAPSVRDVTGWLTRRPDRLDDDQEQRLKTILARCPELDRTARHVRAFAELMNNRQGQDLDKWIERVQADDLPALHGFVNGIGQDRDAVVAGLSLPYSSGAVEGHNNKIKMLKRQMFGRANFDLLRKRVLLTALGRS
>CP029601.1|AZM58584.1|574014_574506_-|hypothetical-protein
MTDRNERPLAVFDLDNTLADTAHRQRFLERRPRDWDAFFAAAPQDPPLEEGIALVRHHARECEIVYLTGRPERCRRDTVDWLTAQELPEGELYMRGNADRRPARHTKLAILRRLARTREIRVFVDDDERVCLDARRAGFTVVQARWTAPSGELKDAQERQGRT
>CP029601.1|AZM58583.1|573785_574001_+|dodecin-family-protein
MSDHTYRVTEIVGTSPDGVDKAVRNGIERASQTLRNLDWFEVTQVRGQIEDGRIAHWQVGLKVGFRLEGTE
>CP029601.1|AZM58592.1|587783_589466_+|CRISPR-associated-endonuclease-Cas1
MEIEKRSGGKRLLAVPAVEDRIVERALMEVVDDLVDAVLLPWSYAYRKGLSVADALHDLTQARNDGARWVVRADIKDCFERIPRWSALTRLRKVVPDPEVCHLIGQLVNRNGVGPAAGRIRQGRGLHQGSSLSPVLTNLYLDSFDRDLLRAGHRVLRYSDDFAVPVDTCAEGEKVLELAREALRRLDLELNDDKCRVESFDEGVEFLGKTTTARSGSRVTEHVSPLESTVYVTEAGSSLRAKGARMRIVHRDKQLLSVPFNRVRQVVCTTPSTLTGPFLRRALEHGVDIVLTEEDGEFLGRLTGPYGPDVHLRHAQHRLADKRAAKLSLATAFVGGKIANMRTCLLRAARAGRLDEAEPAADRLLAARKSAHLAESEAALMGIEGAAARDYFAALGRILGPTWSFTHRRRRPPPDPVNALLSFGYTLLTREAVAAVERAGLDPAVGYLHEMHRGRPSLALDLVEEFRPLIVDHLVIGLCTSGKVTPGGFTTENDGVKGCRMDRETLRTFLAAYERRMLTAAHHPSAGRRTSYRNALSWQARHLADVIADRTPAYTPTAWR
>CP029601.1|AZM58593.1|589473_589758_+|CRISPR-associated-endonuclease-Cas2
MPHTLLVTYDIADDDRRSEISNFLAAHGARVQYSVFEVTLPTKKAVQQLRGRLRKLIEREEDQIRLYPLQASVLNEMMILGNRRLEERADFWIV
>CP029601.1|AZM64344.1|590914_591934_+|LLM-class-flavin-dependent-oxidoreductase
MGSVISSVRFSVLDRSRTREGHTAPEALRDTVSLAREVERLGYHRFWVSEHHGVPGVAGSAPTVLAAAVAGATRTIRVGTGGVMLPNHRPFVVAEQFGVLESLFPGRIDMGLGRSVGFTDGVRRALGRDKGDADDFAGQLEELLRWFRGASPAGVRARPSEGLTVPPFVLAMGEGATIAARAGLPMVIGDLRDRDRMRRGIDRYREQFRPSAWAAEPYVVVSGTVAVAATPEEARRLLVPEAWSMAYSRTHGTFPPLPPAERGEARSMTPRERGFYESGLTGQLAGTEEEVAHELESLLKDTDAQEVLVTTSTYDREALLDSYRRLAALAGLGDGATRR
>CP029601.1|AZM58594.1|591979_593005_-|photosystem-reaction-center-subunit-H
MITREEISILLDHPVYDGDGNKIGDAKHVFLDDASGRPEWVTVKTGMFGSSESFVPIRDAALVKDHLEVPYRKEKIRNAPSVDIDAGGHLSVDEEQRLYEYYGINWDSVLAEPGEDDRGGSPDTTGTAGAAGAAGAAGAAGAAGLAGRRGDTSREGAAPGTAGRAATGGAAAGTAGTAGAAGTAGATGRRGEARTGPRDDAMTRSEEQMHVSVERRESGRARLRKYVVTEEVQETVPVRHEEVRVEREPITESNRDQAMAGPDISEDEYEVTLHEERPVVRTETVPVERVRMTTEEKATQETVRGRVRKERIEAETEMIEDTGRPGRDVPKKGEGPRKGRQ
>CP029601.1|AZM58595.1|593271_594021_-|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MKLTLRVWRQKNADADGAMSTYEVDGISPDMSFLEMLDTLNEELILKGEDPVAFDHDCREGICGACSLVINGDAHGPERTTTCQLHMRSFSDGDTIDVEPWRASAFPVVKDLVVDRSAFDRIIQAGGYVTAPTGSAPEAHATPVPKPDADLAFEHAECIGCGACVAACPNGAAMLFTSAKINHLNVLPQGAPERETRVLDMVAQMDEEGFGGCTLAGECATACPKGIPLTSITGMNKEWLRATRKAGKR
>CP029601.1|AZM58596.1|594017_595967_-|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MTSYADYRTGGRIADTKAPAGPIHERWDKRRFEAKLVNPANRRKQTVIVVGTGLAGGSAGATLAEQGYRVVQFCYQDSPRRAHSIAAQGGINAAKNYRNDGDSIHRLFYDTVKGGDFRSRESNVHRLAEISVEIIDQCVAQGVPFAREYGGLLDTRSFGGVQVSRTFYARGQTGQQLLLGAYQALSRQIAAGNVEMHPRTEMLDLIVVDGRARGIVARDLVTGKIDTYFADAVVLATGGYGNVFYLSTNAMNSNATAVWRAHRRGAYFANPCFTQIHPTCIPRTGDHQSKLTLMSESLRNDGRIWVPKAKGDTRPPAQIPEDERDYYLERIYPSFGNLVPRDIASRAAKNVCDEGRGVGPGGQGVYLDFADAIERMGRGAVEAKYGNLFDMYQRITDEDPYRVPMRIYPAVHYTMGGLWVDYDLQTTIPGLFAIGEANFSDHGANRLGASALMQGLADGYFVLPATVNDYLARNPHKDEVDSGHPAVQEVLAETEDRLNLLLSVDGDRTPDSFHRELGELMWEFCGMARNETGLHKALERIPQIREEFWRRIKVPGTGEELNQSLEKANRIVDYLELAELMCLDALHRTESCGGHFREESQSPEGEAERKDQEFGYAAAWEFTGTGTAPTLHKEDLVFEYVHPTQRSYA
>CP029601.1|AZM58597.1|595968_596640_-|succinate-dehydrogenase
MARTVWDSTVGKKTVMAVSGLTMLLYLVVHMIGNLKIFFGAGEFNHYAHWLRTIGEPFMHYEWTLWLIRVVLVVAVVAHAVSAYQLSRRDIKARPSKYVHRKARTSYATRTMRWGGIILALFIVWHILDLTTGTVHSGGFETGKPYQNVVDTFSTWYGNVIYIVAMLAVGLHIRHGFWSAAQTLGVGSRARDRALKTTANVLALLLTAGFIAVPVGVMTGVVS
>CP029601.1|AZM58598.1|596760_597645_+|LysR-family-transcriptional-regulator
MQFQQLQYFVAVAETRHFTRAAELVHVAQPSLSQQIKVLERELGADLFQRARGNITLTDAGEALLPLARRILADADTARHEVQEVAQLRSGRVRLGATPSLCTGLLPDVLRAFHDRYPGVRLLIEEGGSHDLVRELARGALDLALVVLPLPSPSPALTTVELLREDLVVVSSPDAPRPGRGRRAVRVADLEGERLVMFRHGYDLRELTVAACRAEGFEPEFAVEGGEMDAVLGFVRARLGVAVVPRMVAARSGHGLRVTPLAWPGLYRAIALAHRSDVAPPRAARELQRMLLER
>CP029601.1|AZM58599.1|597814_599956_-|GGDEF-domain-containing-protein
MSGEPDGPEDRLRRFATIWSRAVYPVTSTSSTRPEFEACLLPLARRLSEALRARSFDADAGKAVGAALVEAHCTDPEALSRTLDCVDAYLVLYCGEDGDREDLRARSARLQHAMAAGFAQALRERTLAEQEAIAQAALEAQGVVAQALHDTEARFRAVFEGAAIGIGIADLEGNILQVNNALRRMFGLSEPGLRSRNVRDWVHPDDAPQTWRLYDELVSGEREHYHLEKAFYRQDGTVLWTNLTVSLLRDADGEPQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTFFFERLEKALSVGKDRRFGLCYLDLDGFKTVNDSLGHAAGDRLLVEVADRLQACATAPGEMVARLGGDEFVALTTGPDTQRTVDELAARIMNALLAPISVDGRELTVRGSIGIVEGPAGERSAAEVLRSADITMYRAKSAGGNRFELADPEADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLSPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWRDRHGGEALGPLRINVNLSPCQLTHPGLVQDTVEILERTGVAPDSLCLEVTESALIGADDDLLKPLRRLAEMGIDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTQSMQRFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETGAQAEQLRILGCDTAQGWYYARPGPPDRLHELALVDATG
>CP029601.1|AZM58600.1|599952_600765_-|hypothetical-protein
MERPAWAPRSIDITVPSVSRMYDYYLGGSHNFEVDREAARKAMEFMPGLPKIMQANRAFMRRAVQFAVSEGISQFLDIGSGIPTFGNVHEVAQAADPDARVMYVDHDPVAVAHSQAVLQDNDRADILAADLRKPREILNAPEVRRLIDLNRPVALLLVAILHFVEDADDPYGAVAGLRDALAPGSMLLLTHASYEGLPLSPERAEGAVDVYQNIRNPLIMRTREEIARFFEGYDMVEPGLVPMSQWRPDTAPEDEDPYAFSGFAGVGRTA

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Crispr_ID: CP029601_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_2

589983-590314

TypeIII

Consensus_repeat	Method
ATTCCGCAGGACCCCAAAGCCCGCAGGGCATAGAAACC	CRISPRCasFinder

4 spacers

cas2,cas1,cas6,csm3gr7,csx19,cas10

The CRISPR arrays of CP029601_2

>merge|CP029601|2|589983-590314|CRISPRCasFinder
ATTCCGCAGGACCCCAAAGCCCGCAGGGCATAGAAACCGATCGACCTCCCCGAAGGGAGACCGCTGCGGCTATTCCGCAGGACCCCAAAGCCCGCAGGGCATAGAAACCCCCAGACGGTGGATGTCCCTCTGGTGGACAACAAATTCCGCAGGACCTCAGAGGCAGCAGGGCGTAGAAACGTCGGACCGAACGCGAACGCCAGGAACGTGATCGTCCCATTCCGCAGGACTTCAAAGCCCGAAGGGTATGAGAGCCGCCTGACCTGTCCTCCTGGCCTTTTCCGCAGCCATGCGGCTCTGCGGGTCCCCGAAGTCCGCACGGCATAGAAAGA

>CP029601|2|2|589983-590314|CRISPRCasFinder
ATTCCGCAGGACCCCAAAGCCCGCAGGGCATAGAAACC	GATCGACCTCCCCGAAGGGAGACCGCTGCGGCT
ATTCCGCAGGACCCCAAAGCCCGCAGGGCATAGAAACC	CCCAGACGGTGGATGTCCCTCTGGTGGACAACAA
ATTCCGCAGGACCTCAGAGGCAGCAGGGCGTAGAAACG	TCGGACCGAACGCGAACGCCAGGAACGTGATCGTCCC
ATTCCGCAGGACTTCAAAGCCCGAAGGGTATGAGAGCC	GCCTGACCTGTCCTCCTGGCCTTTTCCGCAGCCATGCG
GCTCTGCGGGTCCCCGAAGTCCGCACGGCATAGAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM58600.1\|599952_600765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|252734
CP029601.1\|AZM58596.1\|594017_595967_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236054
CP029601.1\|AZM58589.1\|582909_585261_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP029601.1\|AZM58595.1\|593271_594021_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
CP029601.1\|AZM64343.1\|582110_582974_+\|TIGR03984-family-CRISPR-associated-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
CP029601.1\|AZM58601.1\|601099_602038_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226765
CP029601.1\|AZM58585.1\|575035_576658_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP029601.1\|AZM58599.1\|597814_599956_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
CP029601.1\|AZM58591.1\|586266_587025_+\|hypothetical-protein	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
CP029601.1\|AZM58588.1\|580821_582402_+\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
CP029601.1\|AZM58590.1\|585378_586254_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375596
CP029601.1\|AZM58597.1\|595968_596640_-\|succinate-dehydrogenase	unknown	unknown	gnl\|CDD\|131101
CP029601.1\|AZM58598.1\|596760_597645_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
CP029601.1\|AZM58587.1\|578528_580820_+\|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
CP029601.1\|AZM58593.1\|589473_589758_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP029601.1\|AZM58586.1\|576867_578532_+\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|224272
CP029601.1\|AZM58594.1\|591979_593005_-\|photosystem-reaction-center-subunit-H	unknown	unknown	gnl\|CDD\|378207
CP029601.1\|AZM64344.1\|590914_591934_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
CP029601.1\|AZM58602.1\|602859_603624_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372881
CP029601.1\|AZM58592.1\|587783_589466_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM58600.1\|599952_600765_-\|hypothetical-protein	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	1.05218e-125
CP029601.1\|AZM58596.1\|594017_595967_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
CP029601.1\|AZM58589.1\|582909_585261_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.94498e-88
CP029601.1\|AZM58595.1\|593271_594021_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
CP029601.1\|AZM64343.1\|582110_582974_+\|TIGR03984-family-CRISPR-associated-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	6.03822e-24
CP029601.1\|AZM58601.1\|601099_602038_-\|hypothetical-protein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	8.31723e-17
CP029601.1\|AZM58585.1\|575035_576658_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.90423e-33
CP029601.1\|AZM58599.1\|597814_599956_-\|GGDEF-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	8.49677e-111
CP029601.1\|AZM58591.1\|586266_587025_+\|hypothetical-protein	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.76315e-16
CP029601.1\|AZM58588.1\|580821_582402_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.85076e-16
CP029601.1\|AZM58590.1\|585378_586254_+\|hypothetical-protein	gnl\|CDD\|375596	pfam18159, S_4TM, SMODS-associating 4TM effector domain. Predicted pore-forming effector domain found in conserved genome contexts with diverse nucleotide synthetases including the SMODS synthetases. Predicted to function as a pore-forming effector in a class of conflict systems reliant on the production of second messenger nucleotide or nucleotide derivatives. S-4TM domains are predicted to initiate cell suicide responses upon their activation.	4.0382e-64
CP029601.1\|AZM58597.1\|595968_596640_-\|succinate-dehydrogenase	gnl\|CDD\|131101	TIGR02046, Succinate_dehydrogenase_cytochrome_b558_subunit, succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. This family consists of the succinate dehydrogenase subunit C of Bacillus subtilis, designated cytochrome b-558, and related sequences that include a fumarate reductase subunit C. This subfamily is only weakly similar to the main group of succinate dehydrogenase cytochrome b subunits described by pfam01127, so that some members score above the gathering threshold and some do not. [Energy metabolism, TCA cycle].	1.65575e-80
CP029601.1\|AZM58598.1\|596760_597645_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.54713e-52
CP029601.1\|AZM58587.1\|578528_580820_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	4.26267e-16
CP029601.1\|AZM58593.1\|589473_589758_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.43498e-20
CP029601.1\|AZM58586.1\|576867_578532_+\|hypothetical-protein	gnl\|CDD\|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	1.72785e-05
CP029601.1\|AZM58594.1\|591979_593005_-\|photosystem-reaction-center-subunit-H	gnl\|CDD\|378207	pfam09557, DUF2382, Domain of unknown function (DUF2382). This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	1.04053e-32
CP029601.1\|AZM64344.1\|590914_591934_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	5.48899e-139
CP029601.1\|AZM58602.1\|602859_603624_+\|hypothetical-protein	gnl\|CDD\|372881	pfam14023, DUF4239, Protein of unknown function (DUF4239). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 254 and 270 amino acids in length.	4.22741e-11
CP029601.1\|AZM58592.1\|587783_589466_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	8.51019e-107

>CP029601.1|AZM58593.1|589473_589758_+|CRISPR-associated-endonuclease-Cas2
MPHTLLVTYDIADDDRRSEISNFLAAHGARVQYSVFEVTLPTKKAVQQLRGRLRKLIEREEDQIRLYPLQASVLNEMMILGNRRLEERADFWIV
>CP029601.1|AZM58592.1|587783_589466_+|CRISPR-associated-endonuclease-Cas1
MEIEKRSGGKRLLAVPAVEDRIVERALMEVVDDLVDAVLLPWSYAYRKGLSVADALHDLTQARNDGARWVVRADIKDCFERIPRWSALTRLRKVVPDPEVCHLIGQLVNRNGVGPAAGRIRQGRGLHQGSSLSPVLTNLYLDSFDRDLLRAGHRVLRYSDDFAVPVDTCAEGEKVLELAREALRRLDLELNDDKCRVESFDEGVEFLGKTTTARSGSRVTEHVSPLESTVYVTEAGSSLRAKGARMRIVHRDKQLLSVPFNRVRQVVCTTPSTLTGPFLRRALEHGVDIVLTEEDGEFLGRLTGPYGPDVHLRHAQHRLADKRAAKLSLATAFVGGKIANMRTCLLRAARAGRLDEAEPAADRLLAARKSAHLAESEAALMGIEGAAARDYFAALGRILGPTWSFTHRRRRPPPDPVNALLSFGYTLLTREAVAAVERAGLDPAVGYLHEMHRGRPSLALDLVEEFRPLIVDHLVIGLCTSGKVTPGGFTTENDGVKGCRMDRETLRTFLAAYERRMLTAAHHPSAGRRTSYRNALSWQARHLADVIADRTPAYTPTAWR
>CP029601.1|AZM58591.1|586266_587025_+|hypothetical-protein
MPTRWTLRLHSDPTPRYATPQQLHGLACALFEGAGADHTGQSKSFTTSPLLAGGQPSARFAELCLGWLDDTRVPAVEALTGRNIRLGAQLLTVHDVRREAAPYQALLAAPADLNRIEMTFVTPTHFNRSDRYIPLPDPELVYQSLLRRWNRFAPEPIADSLAEELISAVVLAEHDIASCSVDLGPGRRIGFTGRSVFTLLNRAGDEAHRIFTALSRFASVAGVGAQTTHGQGYVRITPARTRTPGKGPVTHA
>CP029601.1|AZM58590.1|585378_586254_+|hypothetical-protein
MSARAAARAAYSAVGRIRFLRTTGTVGLAVAAPLVSVLWPSTTGITASVAAVWLVAGRTLMKNWERSWQEKGRKFQEYYDSRLFRIDWNTALAGRIDAVREEMAACRPRRDLPRDRDWYESVPAIPWPYDVLACQMQNALWGRRNHRAYANLLWGLFAATCVAVALVGALERLELEDLLLKLFLPVAPALVDLSELPREHRGAEQAKEKTGDTIADLRDQCEAGRPVTAEDCREIQDAIYHLRGINPAVPSWFHRRLRRKVTAANEAAMQTLKEQIEAMAARHGTRPQQQP
>CP029601.1|AZM58589.1|582909_585261_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MRNDSCASNRHRPRNPGVGVADEVRSGRLAWNSENDKLYVVQADGRRKGFKREYALVPELRDLTGPQLDGLSVDYAWRKGEPRQIRPAGTVVQNTVSPNQFINPYTFLPATPRDTTADELGDRAPTGHDRLHWDHWTGRLRVRMTVVTPLLLLDPSRAERETKDGKPTGHATYPILRRNGRAYVPATSVKGMLRAAYEAVTNSRMGVFTSHDRQLAYRMPTAESRHMVPARISDDGKSVTLLKAARLPRYTRGAVTYKDGTPPRHGDEVEAEVEQRSGMNWTVRSIARAPQPPQMPSEPSHRLSSHNPSPSGNRRTIRGWVCVTNQNMLNKRHERVFFSEAKIPTNHPLTGELIEQWGNTIRDYRGAHRHEEIHERRTAGGKIAPPDQYLGSEPGATAWSRHFYDDAYLDLTPGTLCYAHMDKSSRRILGLYPVMIARSLFRKPPEALLDSSLKPARSIDELSPADRVFGWVAPAGPGAHRGQLRIGPVEDGESVHTEEFAGAGVSLAILGQPKPQQGRFYLGQAPDGTQPLPAQGPKTDWYGPGTALRGRKAYWHHRGLHADHWTDPEGDRTQQVDGTGRFQEYRRPDKDGGPQRDKQNRSVRGWIRPGSTFTFTIDVVNLSDVELGALIWLLQLPEGHHHRLGYGKPLGFGSVRLELLTENGCDLRTGETWATSYRDLSPDGDREPDDTSHKIDLVRSKFVAESEDGGSSHLRAFLAVASGRDDAPVHYPRARPKGTEKNPSVPPHPEGKSYAWFTSNDRENEPKSLPAWDNPRLPILPER
>CP029601.1|AZM64343.1|582110_582974_+|TIGR03984-family-CRISPR-associated-protein
MAADPPHGRPRTSQTAARRPPGRGDSPVDARASRSDSRPDSDRLRHQPRSGRHRRRPRPAHLPPREQAGGTDRLPQQRGRGRSLQSLAHLLGRGAVVITLYSRAASDISLSTALDAVTGLDGAVAFLSTPREHITARVRDGRCHTRDGVRSLDTVFEARIFDEDKEVRWLSTSGHQGRAVALSEEPGLLPDSFPDRLADLSAAEAIESHYLLWGQALPGEGEWTTLHTPQIGTLHVPFPAPEPRRRLRLAAREYVCAEPEHGNAYVGEERLVRIEQAPAEESGSGRG
>CP029601.1|AZM58588.1|580821_582402_+|hypothetical-protein
MTVTTRPMTRRLRMRGWLITRSPLHVGGAGGDPNGVLHAAVDGRGRLYVPGTGITGALRTLTHPEYGSGDEEADRTADLLWGYATPRTQEGAVSRIVVRDALITTGKQLDSDGLPLQTLNPARLEARHSVGIDRHSGTAAHGFLHGRVVVPTDSFLRLELDLNSSDDSIDDDRRRMRQLLRLLSEEGLQLGAAKTRGLGRVQLLAAETDVREEDFSSAAGLLAALEGNGPAWCSEDWAEEPLPARESLSIRIDWRPTAPVMVRSATDGFAVDALPLASAVTPDAVSLVLPGTSLKGIMRSCAERIERTVRRLDAPAAAPGQSAPERSAAFREQLDQLPAVRALFGSAPLRGSDRGRGVGAVTVDDCYAKETMPAELWAQAHGPEAADTASPVTPLRDYRLERADHVAVDRWTGGAADGRLYSVLEPHGVEWQPIRLTVDLARLKRQHADHRAAGTALLMLVLRDLTAGRIPIGYATNRGLGDIAVDRVLLTFRPGNKPVELTDYLNSEDAAGLSKAWRTYLDEEPS
>CP029601.1|AZM58587.1|578528_580820_+|hypothetical-protein
MTRLRLSVTMLSDWHVGSGTGRHGFLDRAVQRDPDGLPFVPAKTLAGVWRDGCETVVYALDGGRRGPWHSWLDWLFGTQPALEARGVIEGTHHGPPRPAALHLDSLHFPAVVTAALREKPLLRQSATFVKPGVAIDRETGSAADGMLRFEEMARGGAVLVGTAEIADSWRLTDDQVHCATALLHAAARLVEGIGGKRRRGAGRCRLDVGGLAADWRWLQGRDHPPQVPEPTPAPVVAPSAGRTVVGWEIADLRLVLRRPLIAHEQTMGNSVRSAEFVPGRTLLPAVLQRLNAPEAAAAARAGDLIVTDATIEIDGHPGRPAPLALVHPKGRPERAYNVMCETMAAGTQAVPYEGYYVGEYELGRLLRLAVCPRSEHTHNTIDDRFQRPVEAVGGPYTYQAIAAGTVLRAQVRVPSGLLGAGWQDLLAGTWRVGRASKDGYGLTDVSSAAAEPRTSSAPPDGRLRVWLLSDTLVTDERLRPSTDPIHLAAELGRALDVELRPVSDNGSGGAVDRASETRRSDPWHSRWSLPRASLLALRAGSCLSFDVVQGTVTAAAVQQVELAGVGLRRAEGFGQVRIADPILHSAFDGACDVTSVDASSVQPVSADSPAPEDVSELVRVWEEAAWRGEIQRASETAARERRHEILGNGYEKVPSSQLGALRTLVTGLDDPSSDSATEWLKRVETVRTARQAPWPDDVVQHLRSVLTEPHTVWQLLRLPEDSLVVEPGGAARLRRSLWAEAVRTLVEDCLTAHARSADAREGG
>CP029601.1|AZM58586.1|576867_578532_+|hypothetical-protein
MVPTTRRRFAAECGALRWLESGGGSVQVHLVVFEAWNISRFIFVTNKRREIAGASELITYLERTWVRTAVEDLFPGFEDRWRIETEPVEILETGAGTAKVLVRDQTSARNLVRAVTTAALRDAPGLEVCGVVGEPFDWSAEGALHASLGRTAERLAPVRTALPGPDARFLRLPVVAGCASTGLPAESMVWLPDGSEPRSAESRAKWRAYGRQTEGDGLQRLAKLAGVTTRELAQVVDHLNDHAEWVGVVYADGNGLGPVFGNFEACVEDRSNRQYADTLRTFSATLQSCARDAFADAVHALEGLGARLEHGPVPLLPLILGGDDLVALCSGDWALPFTEAYLRAFEKRTAMTRDLVGPLSRQGKRGLSACAGVAIVKPHFPFSASRDLAYDLMLEAKHVKNAVEGPCSALSFHVLYDSSEADLDRIRARGTGPDAAHINAQPYVVSDVPEECQWTRGRRWGDLTRRVTALAARDDEGERHLPASQLHDLRQALFLGRSVADARFGSLLPRYPDLEQLDEGQGSLFWRETGSGSEITGFLDALDAAAFLVEGRTP
>CP029601.1|AZM58585.1|575035_576658_+|ISL3-family-transposase
MGDVLLQDLWFHQVEGVVIESVVPDGELVVVRARASAERAVCPTCGTASARVHSRYVRRLADSAVGGRPVVVELQVRRFRCRERSCSQATFAEQVDGLTFRHGRRSTGLQTVLQQVAVMLAGRAGARLADTLAVRASRSTLLRLIRRLPEPDVHTPRVLGVDEFALRKGHNYGTILVDIETRTPVDLLPDREISTVARWLTGHPGVEVICRDRSAAYAEAGRLGAPDAVHVADRWHIWKNLVEAVEKTVIQHRAPLREPEEPGPVRPAPAEQITDLASRSAGEPRQSGRLSDRVREQHAAVHVLLDEGLGLRPIARRLGLARNTVRRLAHAATADELLVGRWTGRSSILDPYKPYLHQRWTEGCTVARRLFEELRERGYPGGESVVKKYVQRLREALPHDDPPRKAPSVRDVTGWLTRRPDRLDDDQEQRLKTILARCPELDRTARHVRAFAELMNNRQGQDLDKWIERVQADDLPALHGFVNGIGQDRDAVVAGLSLPYSSGAVEGHNNKIKMLKRQMFGRANFDLLRKRVLLTALGRS
>CP029601.1|AZM64344.1|590914_591934_+|LLM-class-flavin-dependent-oxidoreductase
MGSVISSVRFSVLDRSRTREGHTAPEALRDTVSLAREVERLGYHRFWVSEHHGVPGVAGSAPTVLAAAVAGATRTIRVGTGGVMLPNHRPFVVAEQFGVLESLFPGRIDMGLGRSVGFTDGVRRALGRDKGDADDFAGQLEELLRWFRGASPAGVRARPSEGLTVPPFVLAMGEGATIAARAGLPMVIGDLRDRDRMRRGIDRYREQFRPSAWAAEPYVVVSGTVAVAATPEEARRLLVPEAWSMAYSRTHGTFPPLPPAERGEARSMTPRERGFYESGLTGQLAGTEEEVAHELESLLKDTDAQEVLVTTSTYDREALLDSYRRLAALAGLGDGATRR
>CP029601.1|AZM58594.1|591979_593005_-|photosystem-reaction-center-subunit-H
MITREEISILLDHPVYDGDGNKIGDAKHVFLDDASGRPEWVTVKTGMFGSSESFVPIRDAALVKDHLEVPYRKEKIRNAPSVDIDAGGHLSVDEEQRLYEYYGINWDSVLAEPGEDDRGGSPDTTGTAGAAGAAGAAGAAGAAGLAGRRGDTSREGAAPGTAGRAATGGAAAGTAGTAGAAGTAGATGRRGEARTGPRDDAMTRSEEQMHVSVERRESGRARLRKYVVTEEVQETVPVRHEEVRVEREPITESNRDQAMAGPDISEDEYEVTLHEERPVVRTETVPVERVRMTTEEKATQETVRGRVRKERIEAETEMIEDTGRPGRDVPKKGEGPRKGRQ
>CP029601.1|AZM58595.1|593271_594021_-|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MKLTLRVWRQKNADADGAMSTYEVDGISPDMSFLEMLDTLNEELILKGEDPVAFDHDCREGICGACSLVINGDAHGPERTTTCQLHMRSFSDGDTIDVEPWRASAFPVVKDLVVDRSAFDRIIQAGGYVTAPTGSAPEAHATPVPKPDADLAFEHAECIGCGACVAACPNGAAMLFTSAKINHLNVLPQGAPERETRVLDMVAQMDEEGFGGCTLAGECATACPKGIPLTSITGMNKEWLRATRKAGKR
>CP029601.1|AZM58596.1|594017_595967_-|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MTSYADYRTGGRIADTKAPAGPIHERWDKRRFEAKLVNPANRRKQTVIVVGTGLAGGSAGATLAEQGYRVVQFCYQDSPRRAHSIAAQGGINAAKNYRNDGDSIHRLFYDTVKGGDFRSRESNVHRLAEISVEIIDQCVAQGVPFAREYGGLLDTRSFGGVQVSRTFYARGQTGQQLLLGAYQALSRQIAAGNVEMHPRTEMLDLIVVDGRARGIVARDLVTGKIDTYFADAVVLATGGYGNVFYLSTNAMNSNATAVWRAHRRGAYFANPCFTQIHPTCIPRTGDHQSKLTLMSESLRNDGRIWVPKAKGDTRPPAQIPEDERDYYLERIYPSFGNLVPRDIASRAAKNVCDEGRGVGPGGQGVYLDFADAIERMGRGAVEAKYGNLFDMYQRITDEDPYRVPMRIYPAVHYTMGGLWVDYDLQTTIPGLFAIGEANFSDHGANRLGASALMQGLADGYFVLPATVNDYLARNPHKDEVDSGHPAVQEVLAETEDRLNLLLSVDGDRTPDSFHRELGELMWEFCGMARNETGLHKALERIPQIREEFWRRIKVPGTGEELNQSLEKANRIVDYLELAELMCLDALHRTESCGGHFREESQSPEGEAERKDQEFGYAAAWEFTGTGTAPTLHKEDLVFEYVHPTQRSYA
>CP029601.1|AZM58597.1|595968_596640_-|succinate-dehydrogenase
MARTVWDSTVGKKTVMAVSGLTMLLYLVVHMIGNLKIFFGAGEFNHYAHWLRTIGEPFMHYEWTLWLIRVVLVVAVVAHAVSAYQLSRRDIKARPSKYVHRKARTSYATRTMRWGGIILALFIVWHILDLTTGTVHSGGFETGKPYQNVVDTFSTWYGNVIYIVAMLAVGLHIRHGFWSAAQTLGVGSRARDRALKTTANVLALLLTAGFIAVPVGVMTGVVS
>CP029601.1|AZM58598.1|596760_597645_+|LysR-family-transcriptional-regulator
MQFQQLQYFVAVAETRHFTRAAELVHVAQPSLSQQIKVLERELGADLFQRARGNITLTDAGEALLPLARRILADADTARHEVQEVAQLRSGRVRLGATPSLCTGLLPDVLRAFHDRYPGVRLLIEEGGSHDLVRELARGALDLALVVLPLPSPSPALTTVELLREDLVVVSSPDAPRPGRGRRAVRVADLEGERLVMFRHGYDLRELTVAACRAEGFEPEFAVEGGEMDAVLGFVRARLGVAVVPRMVAARSGHGLRVTPLAWPGLYRAIALAHRSDVAPPRAARELQRMLLER
>CP029601.1|AZM58599.1|597814_599956_-|GGDEF-domain-containing-protein
MSGEPDGPEDRLRRFATIWSRAVYPVTSTSSTRPEFEACLLPLARRLSEALRARSFDADAGKAVGAALVEAHCTDPEALSRTLDCVDAYLVLYCGEDGDREDLRARSARLQHAMAAGFAQALRERTLAEQEAIAQAALEAQGVVAQALHDTEARFRAVFEGAAIGIGIADLEGNILQVNNALRRMFGLSEPGLRSRNVRDWVHPDDAPQTWRLYDELVSGEREHYHLEKAFYRQDGTVLWTNLTVSLLRDADGEPQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTFFFERLEKALSVGKDRRFGLCYLDLDGFKTVNDSLGHAAGDRLLVEVADRLQACATAPGEMVARLGGDEFVALTTGPDTQRTVDELAARIMNALLAPISVDGRELTVRGSIGIVEGPAGERSAAEVLRSADITMYRAKSAGGNRFELADPEADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLSPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWRDRHGGEALGPLRINVNLSPCQLTHPGLVQDTVEILERTGVAPDSLCLEVTESALIGADDDLLKPLRRLAEMGIDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTQSMQRFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETGAQAEQLRILGCDTAQGWYYARPGPPDRLHELALVDATG
>CP029601.1|AZM58600.1|599952_600765_-|hypothetical-protein
MERPAWAPRSIDITVPSVSRMYDYYLGGSHNFEVDREAARKAMEFMPGLPKIMQANRAFMRRAVQFAVSEGISQFLDIGSGIPTFGNVHEVAQAADPDARVMYVDHDPVAVAHSQAVLQDNDRADILAADLRKPREILNAPEVRRLIDLNRPVALLLVAILHFVEDADDPYGAVAGLRDALAPGSMLLLTHASYEGLPLSPERAEGAVDVYQNIRNPLIMRTREEIARFFEGYDMVEPGLVPMSQWRPDTAPEDEDPYAFSGFAGVGRTA
>CP029601.1|AZM58601.1|601099_602038_-|hypothetical-protein
MKTSWRTASLVASAAAVLSLTTACGQDAPPPPASQNVGATAAAGDYGNAGSGGGDKTGGGQPAASPSSNTAGELNVSTNGELGKIVTDNLGLTLYRFDQDTAEPPASNCEGDCAKTWPPVPADDASAGEGIEKSLLGEVTRSDGTKQLTVGGWPAYRYVKDVNAGDVKGQGVGGKWYALNPQGKKAQSADQPGLSTRKDPKLGEIVVDKNGMTVYRFMKDEAWPEPVSNCTGACLEKWPAVSPVDFEDTKGIQKKGYMTFTRPDGAEQQTINCWPMYTFAGDKAPGDTNGQGVGGTWYAVRPDGKPVGASEK
>CP029601.1|AZM58602.1|602859_603624_+|hypothetical-protein
MPEWLVLILAMLAVCAVVVVITLVRHRRAADDEDPSETPDVIEYMTMWIGVVYAIVLGLAIAGVWEGRSAAQEHVRAEAVALHEVTERVRVYPAEVRDRIREDVNAYVGHVVTTEWRAMAEDGEVTERGTELLDRVRRDVTDYEPRTDFEAQAYQPLVDQVAAADESRSARAESTGETMPGVVWFGLIAGAVITIGMIFALQIRRTRREMILAGLFSALIAFLLFLIWDFDAPYSRGLATSADAFLRLFPHIKG

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Crispr_ID: CP029601_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_3

950025-950134

Orphan

Consensus_repeat	Method
CCCGCGCAGAGACCCACACCCGGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029601_3

>merge|CP029601|3|950025-950134|CRISPRCasFinder
CCCGCGCAGAGACCCACACCCGGGCAGCCGGGCAGACGCCGACCGGCACGAGGACGGACACCGTGCCAGCCCGGCAGGCAGCAACCCGCGCAGAGACCCACACCCCGGCA

>CP029601|3|3|950025-950134|CRISPRCasFinder
CCCGCGCAGAGACCCACACCCGGGCA	GCCGGGCAGACGCCGACCGGCACGAGGACGGACACCGTGCCAGCCCGGCAGGCAGCAA
CCCGCGCAGAGACCCACACCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM58855.1\|944244_946353_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
CP029601.1\|AZM58858.1\|951774_952710_+\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	unknown	unknown	gnl\|CDD\|213538
CP029601.1\|AZM58856.1\|946682_948092_+\|1,3-beta-glucanase	unknown	unknown	gnl\|CDD\|185691
CP029601.1\|AZM64372.1\|950272_951778_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
CP029601.1\|AZM58851.1\|937528_938680_+\|ATP-grasp-domain-protein	unknown	unknown	gnl\|CDD\|379745
CP029601.1\|AZM58861.1\|955244_955832_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
CP029601.1\|AZM64373.1\|960536_961196_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|238348
CP029601.1\|AZM58860.1\|954355_955240_+\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
CP029601.1\|AZM58865.1\|961237_962005_+\|creatinine-amidohydrolase	unknown	unknown	gnl\|CDD\|376872
CP029601.1\|AZM58862.1\|956377_958771_+\|daunorubicin-resistance-protein-DrrC	unknown	unknown	gnl\|CDD\|223256
CP029601.1\|AZM58849.1\|935762_936440_-\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|225524
CP029601.1\|AZM58854.1\|943440_944115_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029601.1\|AZM58852.1\|940345_941116_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP029601.1\|AZM58853.1\|942247_943444_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP029601.1\|AZM64371.1\|938879_940217_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
CP029601.1\|AZM58864.1\|959293_960523_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
CP029601.1\|AZM58857.1\|948398_949547_+\|transaldolase	unknown	unknown	gnl\|CDD\|235117
CP029601.1\|AZM58859.1\|952702_954349_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
CP029601.1\|AZM58863.1\|958798_959245_-\|PPOX-class-F420-dependent-enzyme	unknown	unknown	gnl\|CDD\|274679
CP029601.1\|AZM58850.1\|936436_937291_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM58855.1\|944244_946353_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.0883e-82
CP029601.1\|AZM58858.1\|951774_952710_+\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	gnl\|CDD\|213538	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA. The opcA gene is found immediately downstream of zwf, the glucose-6-phosphate dehydrogenase (G6PDH) gene, in a number of species, including Mycobacterium tuberculosis, Streptomyces coelicolor, Nostoc punctiforme, and Synechococcus sp. PCC 7942. In the latter, disruption of opcA was shown to block assembly of G6PDH into active oligomeric forms. [Protein fate, Protein folding and stabilization].	1.82077e-121
CP029601.1\|AZM58856.1\|946682_948092_+\|1,3-beta-glucanase	gnl\|CDD\|185691	cd02182, GH16_Strep_laminarinase_like, Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.	9.59011e-128
CP029601.1\|AZM64372.1\|950272_951778_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
CP029601.1\|AZM58851.1\|937528_938680_+\|ATP-grasp-domain-protein	gnl\|CDD\|379745	pfam15632, ATPgrasp_Ter, ATP-grasp in the biosynthetic pathway with Ter operon. This ATP-grasp family is related to carbamoyl phosphate synthetase. These genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	3.24054e-48
CP029601.1\|AZM58861.1\|955244_955832_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	3.11839e-61
CP029601.1\|AZM64373.1\|960536_961196_-\|GTP-cyclohydrolase-II	gnl\|CDD\|238348	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.	7.82247e-103
CP029601.1\|AZM58860.1\|954355_955240_+\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
CP029601.1\|AZM58865.1\|961237_962005_+\|creatinine-amidohydrolase	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	5.60617e-70
CP029601.1\|AZM58862.1\|956377_958771_+\|daunorubicin-resistance-protein-DrrC	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
CP029601.1\|AZM58849.1\|935762_936440_-\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	2.82961e-53
CP029601.1\|AZM58854.1\|943440_944115_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.78606e-70
CP029601.1\|AZM58852.1\|940345_941116_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	6.64233e-59
CP029601.1\|AZM58853.1\|942247_943444_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	9.06569e-55
CP029601.1\|AZM64371.1\|938879_940217_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
CP029601.1\|AZM58864.1\|959293_960523_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.15406e-58
CP029601.1\|AZM58857.1\|948398_949547_+\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	2.84563e-162
CP029601.1\|AZM58859.1\|952702_954349_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
CP029601.1\|AZM58863.1\|958798_959245_-\|PPOX-class-F420-dependent-enzyme	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	1.27515e-30
CP029601.1\|AZM58850.1\|936436_937291_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	1.37334e-21

>CP029601.1|AZM58857.1|948398_949547_+|transaldolase
MINVSEATASAGALQRLSGAGVSVWLDGLSRTDLASGALAALVRSGAVTGVTAGPAAFRAAFGTGAEYEEQLAGAAVRGVTADEAVRMMTTADARAAADLLMPVFEATGGRDGRVSLGVDPRLAHRTAALVAEARQLAWLVGRPNVLIGIPATDAGLAAVTEVTGAGIGVDVRTVVSLERYREVMDAYVTGLERARAGGLDPAAIHSVASFSVSPVDREIDKRLTVLGTDAALALRGRAAVANARLAYAAYEEFFSSERWLAAAGGTRANKQRPLWVSTGVRDPALRDTLYVEELVAPGTVSALSEATLRATAGHGAVRGDTVTGGYAQARADLAAVERLGISYDEVVRQLADEDVTASRDAWQELLDAVTKALDGKGVDAE
>CP029601.1|AZM58856.1|946682_948092_+|1,3-beta-glucanase
MNDTSGIPRPLRRPRPLRRALLAVVGTLALAAGAATAASASVPPPPSGWNQIFADDFNGPAGSGVNTSNWQYATGKGYPGGPANWGTGEIETMTSSTDNVSLDGAGNLRITPRRDGAGNWTSGRIETNRTDFQPPAGGKMRVEARIQVPNVTGAAARGYWPAFWMLGAPYRGNYWNWPAVGELDIMENTQGMNTVFATMHCGTTPDGPCHETSGIGGSTTCQGTSCQAGFHTYRLEWDRSTSLEEIRFYLDGNNFHTVRENQVDATTWRNATDHGFFIILNVAMGGGFPDAFGGGPDGATQPGHSMLVDYVQVLTSGGGGDPGDPGDPGEPGNRDAYGTIQAESYDAQSGVIRESTSDAGGGQNVGALANGDWLQFRGVNFGSNPARQFSARVASGAGAGISGLVEVRLDSRGNAPIGSFAVGNTGGWQSWRTIPANISSVTGTHDVYLTFTSGQPADFVNVNWFTFGH
>CP029601.1|AZM58855.1|944244_946353_+|MMPL-family-transporter
MLSALARAATRRPLTVMLLWGLFLLLGFGLGTGVFARLSDNVPEVPGTESESAARHLDRVDPAGESITGVVAGTAVSDPELRADVERAVAEVRKVAGVAAVPDPYTTPGLTAEDGQALIIPVTLTGGLDDDAEERTLDAAADRIREIDAPDVHVSGGPLLGLQIGERAQEDVKNAELISLPVVLALLLVVFGGLRSALLPLTVAVSGIAGAFLALFAFSEVTDISVYAIQVTTMLGLGLAVDYALLMLVRFREERRHTQDVVEAVHRTVAAAGRTVLFSGLTVAVSLTGLLVFPSVFLRSMGLAVAAVVVIDMLAALTLLPALLARFGGRIPPAKTPKGGEEGRFFARVARFAARRKVAVLAVVVPVLLVLALPVSGMSIAVGDARQLPTDTEARQLHDTVAGHFPPGTGVSPVTVVVGPGTDAAVADRIRELSPRSEARELPDGASVIEILPPGESDGEEATRLVERVREIRGGEPVEVTGTAARLVDFREMLSERAPWAALTVLAGIFLLLFAFTGSLLLPLRTIVTTLLSLGAALGVVVWVFQDGHLAGLLGAEGLGALSLTAPPLIVAIAFGLAMDYELFILARMREARGRGDDDREAVVTGLRRSGRVVTCAALLLAVVFAAFMTGGFSPILQIGLGLTLAVLIDATIVRMLLVPATMAALGRGAWWAPAPLRRAHDRFGLREEPTRTPRTGVPTGV
>CP029601.1|AZM58854.1|943440_944115_+|DNA-binding-response-regulator
MSIRVVVADDQELVRAGFGMILDAQDDIEVVAEAGDGEEAVAAVRRHAPDVLLLDIRMPVMDGLEAARQVCAQSGCKVVMLTTFDLDEYVYEALYAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRRERASAEPTATPARLDALTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLVTPGSP
>CP029601.1|AZM58853.1|942247_943444_+|two-component-sensor-histidine-kinase
MSLRSALTPVVTRWRPANPYALDTALAALVLFAVSLQWMFPDEGDDPLTWQGWLLGAATAVPLIWRRRAPCAAACAVSVATPAQALYHAPPPDVMYGGMVVLYTLATVGKPWQRRMMLAGWIIGVVTTMQHQSNKEPFEYAFHLMGIVCAYALGMLARVQRAYTTELEDRARRLERERAADTARARAEERSRIARDMHDILAHAVSLMVVQAEAGPVVVRKDPERAEATFDTIAATGRDAMAQLRRILGVLKEERSDGESMRWLPQPSVTALPALIRQVEESTGLRTELRTRGEPCPLSSDTQVAAYRVVQEALTNTVKHARASRAVVELDWAEDGVTLTVTDDGRGPAGPGGGHGLINIRERAAACGGSAETGSGPDGGFRVVVRLPAAAEREGALG
>CP029601.1|AZM58852.1|940345_941116_+|IclR-family-transcriptional-regulator
MTARSAPDRLLAVLAAFDHTHPALTLTDISRRAGLTLTTTHRLVGALARWGALERDASGTYHVGLRLWELAALAPRGPALRQAALPYLEDLYEATHENVQLAVRDGGEVVYTEWLSGRSAVGVHIRVGARWPLHATGVGLVLLAHCDPALQEEYCAGPLVAFTPHTLTEPGELRRVLAEVRRSGVAVSDRQITEDALSVAAPVRGPDGSVAAAVSVVVARSDARLPALSPAVRVAARGISRALGWQPPAPPRSGDT
>CP029601.1|AZM64371.1|938879_940217_-|6-phospho-beta-glucosidase
MRLTILGGGGFRVPLVYGALLADHAEGRVTRVVLHDVDAGRLRAIARVLAEQADGVPDAPRVTTTTDLDEALRGADFVFSAIRVGGLEGRAHDERVALAEGVLGQETVGAGGIAYGLRTVPVAVDIARRVARLAPDAWVINFTNPAGLVTEAMAGHLGDRVIGICDSPVGLGRRIARVLGVPPREAWIDYVGLNHLGWVRGLRVAGRDELPRLLADPALLGSFEEGRLFGADWLRSLGAVPNEYLHYYYFNRETVDAYRRAERTRGAFLRDQQTAFYAGAGDPGVSALHLWDRTRAEREATYMSENREAAGAGEREADDLSGGYEKVALALMRAIARDERTALILNVRNRGTLAPLDAEAVIEVPCLVDANGAHPVSVDPLPGHATGLVCAVKAVEREVLAAARSGSRAAAVKAFALHPLVDSVSVARRLVDGYLAVHPGLAYLG
>CP029601.1|AZM58851.1|937528_938680_+|ATP-grasp-domain-protein
MVSRVRVWLNRTYAENVFFMDQLRRNPGNRAVEIHATHGDPDSPVLAAADTAELEPEGLSPAAYAEYALTQCRRRGIDVFVPRLHQAAIVAHRAEFEAAGTALLAPPPEAVAAFQDKVIAYEAVQAVGVPVPPWWRVRGAEELLAAVEELEGRGHRACLKPASGAGGVGFRVITRAPFSLSQLSGFPSPYVSLGPVLEAVRRAEEPVDWLVMPLLEQPEVSVDCLTGPDNRVRLAVGRTKNGRRRGFTLHEQWLEPARRIAEGFGLHHLSNIQFRMLGERPVLMDVNTRPAGGLHQLSLCGVNAPWAAVRLALGDDPGEIVPPFLGQDYSVVSGPRPLLPVTVPRQRAGAPESGPAPAPASARGAAPVPAAPVGPRTTTGAPS
>CP029601.1|AZM58850.1|936436_937291_-|metallophosphoesterase
MSATGGGGQLWAISDLHIGYAENRALVEAMQPESDEDWLLVAGDVAETVEDIRWALKTLAGRFAKVVWVPGNHELWTHPSDPVTLRGVERYEHLVEQCRDLGVVTPEDPYPVWEGPGGPVAVAPLFLLYDYTFLPSGCATKKEGLEYAHGTGVVCTDEHLLHPDPYPTREDWCRARVAETERRLGELPDGLPVVLVNHYPLHRHPTEVLWYPEFAMWCGTVLTDGWHRRFPVHTMVYGHLHIPRTTSMDGVRFEEVSVGYPREWRKRDRPPGRLRRIVPGEDEG
>CP029601.1|AZM58849.1|935762_936440_-|4'-phosphopantetheinyl-transferase
MIEELLPQTVVAVEAYGEEGGDAPLYPGEAELVQRAVLKRRREFTAVRTCARRAMEKLGVPPQAVLTGERGAPVWPDGLTGSMTHCVGYCAAALVRAGDLASVGIDAEVHGPLPEGVLSSVALPGEAERVAGLTADRPDVHWDRLLFSAKEAVYKAWFPLTRKWLDFSEADIELFADDGVVGRGGFRATLLVPGPEVGGRRLGGFTGRWVAEGGFVATAIAVPHG
>CP029601.1|AZM64372.1|950272_951778_+|glucose-6-phosphate-dehydrogenase
MRDPRDRRLPRIAGPSGLVIFGVTGDLSRRKLMPAVYDLANRGLLPPGFSLVGFARRDWEDQDFAEVVHNAVKEHARTPFREEVWQQLSEGMRFVPGDFDDDQAFEQLRKAVDELDASRGTSGNYAFYLSVPPRFFPKVVQQLKRHGLADAPEGSWRRAVIEKPFGHDLKSAQELNAIVHDVFDPEQVFRIDHYLGKETVQNILALRFANQLFEPIWNRSFVDHVQITMAEDIGIGGRAGYYDGIGAARDVIQNHLLQLLALTAMEEPAAFDAGSLLTEKLKVFRAVRLPEDLGRHTVRGQYAGAWQGGTKVCGYLEEEGITPSSTTDTYAAIKLRVDNRRWAGVPFYLRTGKRLGRRVTEIAVVFQRAPHSPFDSTATEELGQNAVVIRVQPDEGMTVRFGSKVPGTSMELRDVTMDFAYGESFTESSPEAYERLILDVLLGDANLFPRHQEVEESWKILDPIEEYWASNGRPARYPAGSWGPAEADEMLARDGRSWRRP
>CP029601.1|AZM58858.1|951774_952710_+|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA
MKIDLTDTTASKVNKALVQGRRAIGTPAVGMVLTLVIVTDEENAYDSIKAAEEASHEHPSRTLVVIKRHARNPRERTHSRLDAEVRVGSEAGTGETVVLRTYGEVSDHADSVVLPLLLPDAPVVVWWPAEAPDNPAQDPLGSLGQRRITDLYAVENPMQVLETRMRTYAPGDTDLAWTRLTLWRSMLAAALDQAHASVTSAAVEAEANNPAAELLARWLEARLRVPVDRVVTAGPVVTAVRLGTEDGEVVIDRPEGPLATLTLPGQPARRLALKVRPTSELIAEELRRLDADEMYAVALRGEAPEEAPAHV
>CP029601.1|AZM58859.1|952702_954349_+|glucose-6-phosphate-isomerase
MSDVPEPVRRPEWAALENHRADRLPQPDLRALFADDPSRAQRYVVHVGDLRIDYSKHLVDNETLALLFELAAATDVSGLRDAMFRGERINVTEDRAVLHTALRAPRDAVVEVDGENVVPAVHAVLDRMADFAGRIRSGEWTGHTGRRIRTVVNIGIGGSDLGPAMAYEALRAFSDRELTFRFVSNVDGADLHEAVRDLDPAETLFIVASKTFTTIETITNATSARSWLLDGLGGDEKAVARHFVALSTNAEKVTEFGIDTANMFEFWDWVGGRYSYDSAIGLSLMTAIGPDRFREMLDGFRIVDEHFAHAPAEANAPLIMGLLGVWYNNFFGAQSHAVLPYSHYLSKFTAYLQQLDMESNGKSVDRQGRPVSWQTGPVVWGTPGTNGQHAYYQLIHQGTKLIPADLIGFARPVAGLGDRLEAQHDLLMANLFAQGQALAFGKTAEEVRAEGVPEEQVPHRTFEGNRPTTTILATELTPSVLGQLIALYEHKVFVQGAIWNIDSFDQWGVELGKVLAKRVEPALTSGADVPGLDPSTAALVAAYRERRK
>CP029601.1|AZM58860.1|954355_955240_+|decarboxylating-6-phosphogluconate-dehydrogenase
MQIGLVGLGKMGGNMRERLRRAGHTVIGFDTNPEVSDVPHLSDMVDRLEGPRVIWVMVPAGGPTQEVVDRLASLLKHDDIVVDGGNSRWTDDEKHAKELAARGIGFVDAGVSGGVWGLEHGYALMVGGEKDHVERLEPIFEALKPEGPYGYVHAGRVGAGHFAKMVHNGIEYAMMQAYAEGWELLEKVDSVDNVREVFRSWQQGTVIRSWLLDLAVDALDDDEHLERLRGYAEDSGEGRWTVEAAIDNAVPLPAITASLFARFTSRQEDSPQMKMVAALRNQFGGHAVETVRKA
>CP029601.1|AZM58861.1|955244_955832_+|histidine-phosphatase-family-protein
MGDLLLARHGETEWSRDGRHTGRTDVPLTPRGEDQAKSLAPLLAGRTFALVLTSPLVRARRTAELAGLTGAEPEPDLREWDYGGYEGITTAEIRRDRPGWNLWTDGVPPGREYPGESPAQVGDRADRVLTRVVTGPLTQGDVLLVAHGHLLRVLTARRLGLPPSAGRLFRLDTGTLSRLSEEHDTPVIAEWNTRP
>CP029601.1|AZM58862.1|956377_958771_+|daunorubicin-resistance-protein-DrrC
MSKDTRTDRQSAAPHPADSHDLIRVHGARENNLKDVSVELPKRRLTVFTGVSGSGKSSLVFDTIAAESQRMINETYSAFLQGFMPTLARPEVDVLDGLTTAITVDQQRMGSDPRSTVGTATDANAMLRILFSRLGKPYFGPPGAFSFNVASVSASGGFTVDRGADKTRTEKVSFSRTGGMCTHCEGRGTVSDIDLTQLYDDSKSLSQDPFTIPTYTGGGWVVRVIAESGFFDPDKPIREYTKKERHDFLYREPTKVKINGVNLTYEGLIPKLQKSMLNKDREAMQPHIRAFVDRAVTFATCPECDGTRLTAGARSSKIKDISIADACAMEIRDLAEWARGLDEPSVKPLLTALQHTLDSFVEIGLGYLSLDRASGTLSGGEAQRVKMIRHLGSSLTDVTYVFDEPTVGLHPHDIQRMNNLLLRLRDKGNTVLVVEHKPEAIAIADHVVDLGPGAGAEGGTVCFEGTVEGLRASDTVTGRHLDDRAAVKDTVRQPTGTLPIRGATANNLRDVDVDIPLGVLTVVTGVAGSGKSSLVHGSIPAEEGVIAVDQTPIRGSRRSNPATYTGLLDPIRKAFAKANGVKPALFSANSEGACPTCNGAGVIYTDLGMMAGVSTTCEDCGGKRFDASVLEYRFGGRDISEVLAMSVAQAEEFFREGESRIPAAHRIVARMADVGLGYLTLGQPLTTLSGGERQRLKLATHMGDKGGVYVLDEPTTGLHLADVEQLLGLLDRLVDAGKSVIVIEHHQAVMAHADWIIDLGPGAGHDGGRVVFEGTPAELVAARSTLTGEHLAEYVGA
>CP029601.1|AZM58863.1|958798_959245_-|PPOX-class-F420-dependent-enzyme
MTQDAEQNALLALLSEEHGGVLVTLKRDGRPQLSNVMHAYYPDERVIRVSLTDDRAKTRNLRRDPRASYHVTTPDRWAYTVAEGTAALSPVARDPYDETVEELIRLYRDINGEHPDWNEYRAAMVRDKRLVLRLRVERAYGIPRGAGA
>CP029601.1|AZM58864.1|959293_960523_+|serine-hydrolase
MGVLRQETGPEEAGLDAPALERLDRHFARLVDAGKLAGFLVALARGGRVAHLTAYGARDVAAGLPVESDTLWRIYSMTKPVTAVGALMLVEEGLLALDDPVGRHLPAFAEPRVYAGGSGDRVRTRPAAGPLLVRHLMTHTAGLTFAFYHAHPVDALYRAAGLESSVAPGADLAGTTEVYASLPLQFDPGTQWNYSVASNVLGRIIEVASGRPLDVYLAERVFRPLGMTDAGFQVSDEQAGRLAELYGESDTGGIRPIDGLPLRGRPRFLSGSGGMVASAHDWHRFMELLRRRGELHGTRLLTPATVGLMTRNHLPGGADLRSFGSRPAHDEPGNEGVGFGLGVSVVVDPARTQSPSALGSYGWSGVATTTFWVDPGRDLTVQFHTQVRPRSSHTVFRDLKRLVHEAVAH
>CP029601.1|AZM64373.1|960536_961196_-|GTP-cyclohydrolase-II
MTEKVGVLGKKPQRRTGVERVVNAPLPTVYGQFQAVGYLDHDRGDEQVALVYGDLRADRVLTRLHSECLTGDAFGSQHCECGEQLAAALRAVAAEGAGVVVYLRGHEGRGIGLLAKLRAMALQAEGLDTVEANLALGLPVDARDYAVAAGMLKDLGVRSVRLMSNNPRKREALVRHGVQVAEQVPLLIPPSESNITYLRTKRERLDHHLPHLDAVAHLS
>CP029601.1|AZM58865.1|961237_962005_+|creatinine-amidohydrolase
MGGSQKRSAAYGPVHGLLPADTTEDVRTRGADVSQQIAVLPVGSFEQHGPYLPLTTDTLVACAIAREIADAYPVHLLPPVTISCSHEHAAWPGTVSLSSVTLHAVIRDIADSLRRSGVDALVLVNGHGGNYVLGNAVQEASARGERMALFPAPEDWETARERAGVVTSLLTDMHAGEIETSVLLHTHPEVLRPGYETSDHVADDRRHLLTTGMSAYTDSGVIGRPSLASPEKGKQLLASLTDSFGAYFSLLTSEA

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Crispr_ID: CP029601_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_5

1792564-1792671

Orphan

Consensus_repeat	Method
GCCGGACCCCCCGGGTGACAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029601_5

>merge|CP029601|5|1792564-1792671|CRISPRCasFinder
GCCGGACCCCCCGGGTGACAACGCGAAGAGCCTCACCGACAGGCGGACAGGCCGTCACCGGACGCCGATGATCGCCACGCGGCTGCCGGACCCCCCGGGCGACAACGC

>CP029601|5|5|1792564-1792671|CRISPRCasFinder
GCCGGACCCCCCGGGTGACAACGC	GAAGAGCCTCACCGACAGGCGGACAGGCCGTCACCGGACGCCGATGATCGCCACGCGGCT
GCCGGACCCCCCGGGCGACAACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM59457.1\|1781159_1782209_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223787
CP029601.1\|AZM59463.1\|1794407_1794848_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275077
CP029601.1\|AZM59466.1\|1796272_1796671_-\|enamine-deaminase-RidA	unknown	unknown	gnl\|CDD\|100004
CP029601.1\|AZM59456.1\|1779362_1780136_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP029601.1\|AZM64451.1\|1776205_1776892_+\|ribulose-phosphate-epimerase	unknown	unknown	gnl\|CDD\|376358
CP029601.1\|AZM59461.1\|1791334_1792393_+\|regulator	unknown	unknown	gnl\|CDD\|226355
CP029601.1\|AZM59464.1\|1795080_1795275_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM59471.1\|1801354_1803721_-\|bifunctional-salicylyl-CoA-5-hydroxylase/oxidoreductase	unknown	unknown	gnl\|CDD\|236203
CP029601.1\|AZM59465.1\|1795320_1796145_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP029601.1\|AZM59467.1\|1796667_1797795_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
CP029601.1\|AZM59455.1\|1778536_1779373_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
CP029601.1\|AZM59459.1\|1783681_1788685_-\|DNA-repair-ATPase	unknown	unknown	gnl\|CDD\|378861
CP029601.1\|AZM59470.1\|1800482_1801367_+\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
CP029601.1\|AZM59468.1\|1797910_1799521_+\|2-aminobenzoate-CoA-ligase	unknown	unknown	gnl\|CDD\|341268
CP029601.1\|AZM59462.1\|1793527_1794298_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM59469.1\|1799555_1800377_+\|PaaX-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225864
CP029601.1\|AZM59454.1\|1776888_1778406_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143425
CP029601.1\|AZM59460.1\|1788755_1790801_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225177
CP029601.1\|AZM64452.1\|1780282_1781041_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP029601.1\|AZM59458.1\|1782546_1783668_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340923

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM59457.1\|1781159_1782209_+\|hypothetical-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.15839e-19
CP029601.1\|AZM59463.1\|1794407_1794848_-\|hypothetical-protein	gnl\|CDD\|275077	TIGR04244, nitrous-oxide_reductase_precurser, nitrous-oxide reductase, TAT-dependent. Members of this family are the nitrous-oxide reductase structural protein, NosZ, with an N-terminal twin-arginine translocation (TAT) signal sequence (see TIGR01409). The TAT system replaces the Sec system for export of proteins with bound cofactor.	0.00510158
CP029601.1\|AZM59466.1\|1796272_1796671_-\|enamine-deaminase-RidA	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	8.70065e-24
CP029601.1\|AZM59456.1\|1779362_1780136_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.65946e-51
CP029601.1\|AZM64451.1\|1776205_1776892_+\|ribulose-phosphate-epimerase	gnl\|CDD\|376358	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	5.08256e-40
CP029601.1\|AZM59461.1\|1791334_1792393_+\|regulator	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	8.05681e-14
CP029601.1\|AZM59471.1\|1801354_1803721_-\|bifunctional-salicylyl-CoA-5-hydroxylase/oxidoreductase	gnl\|CDD\|236203	PRK08255, PRK08255, bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase.	0
CP029601.1\|AZM59465.1\|1795320_1796145_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.35163e-20
CP029601.1\|AZM59467.1\|1796667_1797795_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	2.34283e-97
CP029601.1\|AZM59455.1\|1778536_1779373_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	5.13414e-129
CP029601.1\|AZM59459.1\|1783681_1788685_-\|DNA-repair-ATPase	gnl\|CDD\|378861	pfam12458, DUF3686, ATPase involved in DNA repair. This domain family is found in bacteria, and is approximately 450 amino acids in length. There are two conserved sequence motifs: DVF and SPNGED.	0
CP029601.1\|AZM59470.1\|1800482_1801367_+\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	6.07742e-27
CP029601.1\|AZM59468.1\|1797910_1799521_+\|2-aminobenzoate-CoA-ligase	gnl\|CDD\|341268	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer.	0
CP029601.1\|AZM59469.1\|1799555_1800377_+\|PaaX-family-transcriptional-regulator	gnl\|CDD\|225864	COG3327, PaaX, Phenylacetic acid-responsive transcriptional repressor [Transcription].	2.06338e-39
CP029601.1\|AZM59454.1\|1776888_1778406_+\|aldehyde-dehydrogenase	gnl\|CDD\|143425	cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.	0
CP029601.1\|AZM59460.1\|1788755_1790801_-\|hypothetical-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	5.96446e-48
CP029601.1\|AZM64452.1\|1780282_1781041_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	9.37379e-57
CP029601.1\|AZM59458.1\|1782546_1783668_+\|MFS-transporter	gnl\|CDD\|340923	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily. This aromatic acid:H(+) symporter subfamily includes Acinetobacter sp. 4-hydroxybenzoate transporter PcaK, Pseudomonas putida gallate transporter (GalT), Corynebacterium glutamicum gentisate transporter (GenK), Nocardioides sp. 1-hydroxy-2-naphthoate transporter (PhdT), Escherichia coli 3-(3-hydroxy-phenyl)propionate (3HPP) transporter (MhpT), and similar proteins. These transporters are involved in the uptake across the cytoplasmic membrane of specific aromatic compounds such as 4-hydroxybenzoate, gallate, gentisate (2,5-dihydroxybenzoate), 1-hydroxy-2-naphthoate, and 3HPP, respectively. The PcaK-like aromatic acid:H(+) symporter subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.13653e-62

>CP029601.1|AZM59461.1|1791334_1792393_+|regulator
MTERQIPEEYLEEYTRILAEVAATGRRLTRDEIASRRVLGERAAEAGFNLRSLVSAHLSAARGAWPPGGDTADDALAAVQQVVDAFAEGYERAQRLAVRQEEAARREFIDDLLYGRSDLGRLAERAERFGLRLSHEHAVAVAQGPTAYDEGDPVPRQVEQALIARFNDRSILLTTKDGRLLCIAPGHQKEVLTYFAKQAHAATDGGQVAIGRPQSGPGGVVQSYEEALSSLEIAERLGLDDPVLRAADLLVYPVLARDRQAMADLVHNTLGPLSTARGGAQPLIDTLTAYFDSGCVAAEAARRLSLSVRALTYRLERISKLTGANPADPAHRYMLQTAVIGARLLDWPNSAA
>CP029601.1|AZM59460.1|1788755_1790801_-|hypothetical-protein
MDAATVGLAVLAGVALLLVLIGLLLVTKLFRKVEQGKALIVSKVRKVDVTFTGSVVLPVLHKAEVMDISVKTIEITRAGKEGLICRDNIRADIRITFFVKVNKTVDDVIKVAQAVGTARASDRNTLQELFHAKFSEALKTVGKQMDFTDLYTKREELRYRIIEVIGVDLNGYHLEDAAIDFLEQTPLTQLDPGNVLDAQGIRKITELTAVEHVRTNEAQRNEQKEITRQDVDAREAILELERRQADAESKQKREIETVRAREEAETARVVEEERLRAQSAFLRTEEQLGVQRENQAREVAVAAKNRERVIAVESERIEKDRLLEVIARDRETELTRISAEKEVEAEKREIAEVIRERVAVDRTVAEQEESIKRLRAVEEAERERQAVIIAAEAEAQEKLVKDIKAAEAAEQAATHRAAEELTLAEARLKTADLDAQAKLRLAEGIQAESAAEGLATVQVRDKEAEVIEKAGRAEAEATQARLRAEAEGARAKALADAEAISGKLRAEAAGLTEKAAAMAALDEASRGHEEYRLRLEAEKDIRLAGLDVQRQVAEAQATVLATGLESADINIVGGESVFFDRLMSSIALGKGVDGFVKNSETAQALAGPWLDGSASFTDDLSRILGSVSTGDVQNLTVSALLMRLMRQGGEHTDRFRELIEKAGELGLSDTPLAELNGRART
>CP029601.1|AZM59459.1|1783681_1788685_-|DNA-repair-ATPase
MTTGTHEPTNPAPRATPGPGAPGTSTAPGPDAPHEASRTPAPGGAGPAVDGGAYQVLRDRLTAQAGELARRAEALNHRRAEEFDAPELRLTGTERLRTDRASIPRDIVAVGDVLLFGYEARPRPDRDTAVGDVLAPHDRDLRRLPEDAVPGLLDDPDFVREFAALHRYYRQARLLRLRRVDGKLLAVFQTGEKPGDIRVLRWSVTEDGHAAFLDARGDRDHAATPPADIVWTPATRENHVLGRHPHVSVQDEIYVDTLGGTLTVKTENDTTTPDGIHAEPVDEPLQSLADADIAHARVGPLILLRVLPYKETAPRHLVFNTLTRTVVRLDGIGQGCRRLPEDQGIVFPGGYCLAAGTHKTYELDTDGMEFEREVRSPHGEDVLYAFHAPARGRALLLSYNQIREAVATPMAGHGWALFDDGQLVLLRPEGDEPARVHPVQLWESPYVSDTHAAAQPVGEGALARVGNADLVRGISDCLSLARSAAETTPTAEIYTTLAAACVRALDTHHWLGEPQLGDLRTPLEQVRTTAEQVLAEFETVRDLTRRAAEALDEAADRIASVVRRLRGEQPREATAWVTGLTELRHAQGHLLTLKDMRYADHDRIDELAGTAETDLASFGQRAIAFLAREDAFAAHHTDLERLHADIESLTTTAEAAPVAARLDALADGLRTVTEVVAGLDITDATVRTTVLERVADAMGGVNRARATLDTHRRGLLDQEARAGFAAELALLGQTVTGALAAADNPEHCDDQLTRVLTQLESLESRFAEFDDVLGELAAKRTEIYEAFAARKQSLTDARARRAEQLASAADRVLQTIARRSASLTDTDAVSTYFASDPLVAKVRRTAGELRELGDRVRAEELEGRLRSAHEEAARALRDRTDLYADGGRVIRLGGHRFAVSTQPFDLTVVPHGDGLAVALTGTDYRAPVTDPALLADRPLWQRHLPSESPEVYRAEHLAARLLHEHGPDALAGADDLAALVRKAAEEAYDEGYERGVHDHDATAILTALLPLYDGAGTLRHASAARAHALLYWAHGTTDREREDLTRRARSLARVRDAFGPPPALDALRAELARAVGEWDAGAAVRPEACAAYLFDELTTGPDGFVISSRARTLLDKFRRTVATDAYDEDLPALADLTARRQLVEAWLTAYTTAAGDPVTPGDLAEAVAAELCPDVPRHESDAPLTVTVEGLIATHPRITDRRLTLRLDAFLYRTEEFRHHDVPAFRAFQRRRTALVAAERTRLRLDDHRPRVMSSFVRNRLVDEVYLPLIGDSLAKQLGTTGESARTGTGGLLLLVSPPGYGKTTLVEYVAHRLGLVLVRISGPALGHGVTSLDPAEAPNATARQEVEKINFALAAGNNTLLYLDDIQHTSPELLQKFIPLCDATRRMEGVWEGEPRTYDLRGKRFAVCMSGNPYTESGEAFRVPDMLANRADVWNLGDVLAGKEDVFALSFVENALTANPVLAPLASRDRADLDLLIRLAADDPTARPDKLVHPYPPTELDRILAVLRHLLTARRTVLAVNEAYIASAAQSDEARTEPPFRLQGSYRNMNRIAQRIQPVMNDAELTAVIDDHYAAEAQTLTSGAEASLLKLAELRGTLTPEEAARWAELKAAHVRTRSAAGHGEDPAARAVDALTLLGERIAAVESAITRASDPRRLPAHPRPGSD
>CP029601.1|AZM59458.1|1782546_1783668_+|MFS-transporter
MGADPGGAGTLGSMAYVGMLIGALAGGRVSDLSGRRTFVNASVAWFAVWTLACAAAAAPWQLGTFRLLAGIGMGAVLPAVLALARELAPPERTGIVFTILLAGVPAGGLLASVTGLAVLPEQSWRTMFAIGGAASVVILLVTFLRLPDSAHFAQPRERRPERAAVRDLFRGGLLRTTLLFPVANFMMLLTWFGLNTWLTTLMRDLNYPLSSALQFSMTLNVGALAGSFLLAWRSVAWGARRTAAFSALLTAAGILGCVMNPGSTPLFLALIALIGAGAQSALNLITASVADTYPVTLRATAIGWTHGIGRGGAIVAPQLGGWILAAGFGPHAVLGTFVVTAALGGLFMLVLTAIGVAAAVRRAPAPLVPTRSR
>CP029601.1|AZM59457.1|1781159_1782209_+|hypothetical-protein
MQHRTALRLTAAFAAIALAAGCSSASDQGSGPRTAPSSEFDFDLEGQTIRLGLTQPSAYQMGSYYSRDLLEQWGANVETQVLGKTTGVEAIVAGQLDVAARSQEEALRGSDSGADLTAIGSWLSSIPYVLITKKEVSDIADLKGRNLAVAGPASFDNLMFRYILENEGLDPESDVTFTALGAPPDRTSAMLSGRVDAALLFVDGWISIEEQADDLKNLGYLNDTLPDPGIDNGFWYGDTEFLKSSGDVPLAIACANLEANAWAKDKDAFVSYTLDHVKGALEPDVAAAYDEAQRLNMFPTTPEELLKTDRIDNLVGILADHDVVKDDLDPKQIVDSSYLEEAAEMGCGS
>CP029601.1|AZM64452.1|1780282_1781041_+|ABC-transporter-permease
MCTPEFYSPACFLLVFFIAWEIAGRRIDPLLFAPPSRVAEAFVDLAASGELVTATLTTLNALLAGFGLAVLIGLPFGVLLGQGSVFGRVLEPYINAVYATPRVVIVPLVIIWFGVDYSGRVFLVWLGSVIPVIINTAYGVRNARPDLLEVARSFQTPRHQLIRHVLLPGALPYIAAGLRIAAGRAVIGVLVAEIFLQNTGLGGVIQTNAAFFRTAPMLAAVMLVGLIGTLFISSVNVLEKRVAGWKTAGRAE
>CP029601.1|AZM59456.1|1779362_1780136_+|ABC-transporter-permease
MRSERFSPRAALGRAAPHLAFAVVFFGAWELYGRSDDAQLPAVSAVATAMADMTADGSLPSALGSSMQLLVIGFLSAAVAGFVGGVLLGRYRPLDRTLMPFLSALYAVPTVALVPLVLVWLGFGLSGRVTVVFLSCYFPIMMNVYAGVRDTPPELIEVSRSFLVKSEFGLLRTVVIPAAVPFIMSGLRLGIGLGVVGMAVAEVYLRLGGIGALIAAYGATFRLDYLFAAIIPLPLLGLLLTKLFTLIERRADAWRAG
>CP029601.1|AZM59455.1|1778536_1779373_+|ABC-transporter-ATP-binding-protein
MSKSAGPLDDAGIEIDGVGKTFRWRNKGVAEEVVALGKVDFTVRSNEFLAVIGPSGCGKTTLLRTVAGLIKPDRGEIRVGGQPVTGPGEDRAVVFQHFGLFPWKTVVDNVKFPLRMRGVPDKEAAATARANLKKVGLEGFERSYPHQLSGGMQQRVGLARALATDARILLMDEPFGAIDAQTREFMQEQLMKLWDENKKTVVFVTHDLDEAVSLADRILVLSRRPSRVRAVVDVDLPRPRWDYDVRSEPAFAEARRTIWEMLRSDLVEEEEGAGIHAI
>CP029601.1|AZM59454.1|1776888_1778406_+|aldehyde-dehydrogenase
MTAEPTLPAGASRPVDVDALSEATRNRTWSMLIAGELVPAGSGASYEDVSPVTGKTVAQVPDATAEDVETAVVAARAAFKEWAATPIAERARVVREIARRVREHAPEFGALDTLDGGNIIRLSTADAYAGADALDYFADCAVALKGETVPISPSALHYTTQEPVGLVARIIPYNHPIMFATAKIAAPLVAGNCVLLKPPHQTPLSALRLGEIVADLLPKGVLSIITGQGPETGQALVEHPDIRRIAFIGSPQTGLRVQRAAAETTVKHVTLELGGKNALIAFPDADPKAVAASVVRGMNFTWAGQSCGSTSRLVVHEDIREETVAEVVRLIRDMRIGDPFDEQADVGCLVSPEQFAKVNSYLSIATGEGATCAVGGAPSQPAARPHALIVEPTVFTGVTPDMRIAQEEVFGPILSVLSFTTESEAVEIANSVEYGLTGSVWTDDLRRAHRVADALDTGYVWINDSARHFAGTPFGGWKASGLGQEECVEELVSFTQPKAVHVNYA
>CP029601.1|AZM64451.1|1776205_1776892_+|ribulose-phosphate-epimerase
MVRAHRALAVVGQSDMVWGHVSLRDPQGRGIWMKSAGWGFEEVGTEQVVLVSMDGEVLSGTGKRHLEWPIHTEIMRARPEVTCVVHTHATPVIAFASLGVSLLPVDRDGVLFTDPQIPRFTVTGGLVKTTGLGTALADTLGGAPACLMPTHGMVAVGTDTAHAVMHAVLLERACRMQLLAASAGGPTLYSNHHEVLAKREECWPDSQIQAGWEYLVRQAELAYPKEMP
>CP029601.1|AZM59462.1|1793527_1794298_-|hypothetical-protein
MAVLRHTVSLAPVPLPWLADALAVLLDLAEGTRAEAGRVLLPDGRTVPDVRLAEGRHLRPGAVYESTGDARETVRVGVEEWHRRRALRLALAVSASDAEVEGRGVLRRPDRPRLVEIDGRARVAGVWSALSRVSGSARLRCDDWWAAAESGHRGRTAPLRARVECGAGRAELRAVPAPGGLDGHWRVTVTVRIRGRRLYRPVAAIALTLVRGRLQRSFATTLNDLATHWNTEIPRVLALPPESLHRELLPTDPTPP
>CP029601.1|AZM59463.1|1794407_1794848_-|hypothetical-protein
MPVRPYLGAAAGAALLLLGTAAAAPSATAQSAPAESVTVDAEGRVDSYGVTLSGTYRCTGATGEVFVASSISQAAEPGKRYPIGGTRAVCDGKEHRWVNSGHVQGATLKAGSAHVEATVMELRPGGILLLPVTHAVEHRDITLVQD
>CP029601.1|AZM59464.1|1795080_1795275_+|hypothetical-protein
MCAHQPSCPRTESRAPHVVAAHPEQGWSLLCDGVIVFDDTGELLPDGRVVAPHRLPAESLAVAA
>CP029601.1|AZM59465.1|1795320_1796145_-|alpha/beta-hydrolase
MPEIALSAGTIEYEDTGGEGPVVVLLHGLLHDSSVWRKVIAVLRPGHRLIAPTLPYGAHRRPMTRPPTPDLVNELIVEFLDRLDLRDVTLVESDCGRAQTVAARHPERLARLVLISCEAFDNYPPGLPGKMITAACRIPGGIPLMVRTLGLKPLRRLPVGFGALTLRPVPDEIVERWLRPLRTDPAIRRDFRHYGTHVRRFELLEAAQGLRYFDRPALVVWAAEDRMMPREHGRLLAELLPRGRLVELKRTRTLIAEDRPERLASLLRWFVAEG
>CP029601.1|AZM59466.1|1796272_1796671_-|enamine-deaminase-RidA
MTAERVNPPELSPPAGFSHAVVATGSRLVFLAGQTALDPDGKVVGDTLPEQFTRALTNLLAALRAAGGTPADLARVTVYATDVAAYRTHAREIGTAWRELAGRDYPAMAVVEVVRLWDEEALVELDGFAVLP
>CP029601.1|AZM59467.1|1796667_1797795_-|acyl-CoA-dehydrogenase
MTAFSLEPAQVAWCAELRTLAAQRLRPLAEKSEPGRVDRALVAELGSLGLLSRLFTSGALELCLMRESLAQACTEAETALALQGLGAHPVHAHGTPAQRERWLPGVSDGSVVAAFALSEPGAGSDAAALSLTAHPDGPGAWRLTGDKRWISNAPDADFCTVFARTTPGAGARGVTAFLVPADRPGLTGSRLDMLSPHPIGALRFDAVPVTADDVLGEPDGGFRVAMDTLNLFRPSVGAFAVGMAQAALDATLSHTARRDAFGGKLKDLQSVAHQVAEMALRTEAARLMVYAAATAYDAGAADVPRRSAMAKLLATETAQYVVDRAVQLHGARALQRGHLLEHLYREVRAPRIYEGASEVQRGIIAKESYKNLEDR
>CP029601.1|AZM59468.1|1797910_1799521_+|2-aminobenzoate-CoA-ligase
MNPRATAHVDTFARDHLPPPDEWPELRFDLPELRYPERLNCTAELLHGPPDDRPVFRTPDGASWTYGELRARVDRLAHILTGDLGVVPGNRVLLRGPTTPWLAACWLAVLKAGAVAVTVLAQQRAHELSTICSIAEVRHALCDVRAVDDLAKAEVPGLRIATYGGDTPDDLLRRPAPGTPYEAVPTAADDVALIAFTSGTTGRPKGCMHFHRDVLAIADTFSRHVLRPVPDDVFAGSPPLGFTFGLGGLVVFPMRAGASALLLEQAHPEQLLAAVAEHRVSVLFTAPTAYRAMLGAAAPRDLSSLRRCVSAGENLPAATWNAWYERTGLRIINGIGATELLHIFVSAADEDIRPGTTGVPVPGWQARVQDADGAPVPDGEPGLLAVRGPVGCRYLADPRQRDYVRGGWNITGDTYVRDPDGYFRYVARADDMIISAGYNIAGPEVEDALLRHPDVVEAAVVGRPDEARGQVVVAYTVVKEGAERDAEALRAFVKEELAPYKCPREIVFMDALPRTATGKLQRFRLRASAGTRDDQG
>CP029601.1|AZM59469.1|1799555_1800377_+|PaaX-family-transcriptional-regulator
MINVSDQHAPRSLIVTLYGAYGRFAPGPVPVAELIRLLAAVGVDAPSVRSSVSRLKRRGLLVPARTARGAAGYELSPDARQLLEDGDRRIYATAPHRDEGWVLAVFSVPESERQKRHVLRSRLSGLGFGTAAPGVWIAPARLYEETRHTLERLRLDGYVDLFRGEHLGFAPTADAVARWWDLAGIAKQHEAFLDRHGPVLRSWQERSDTPPEDAYRDYLLALDSWRHLPYADPGLPAALLPRDWPGTRSAAVFHALHERLRDAGARYAALESP
>CP029601.1|AZM59470.1|1800482_1801367_+|sulfotransferase-family-protein
MSLLRNVNRALTVTTGLQVRRAPRTASPRPAVNPAERPAGPYHRPSAGELATERLLRQPVFIISSIRSGSTLLRMMLGAHSRLHAPHELHLGAIDVTCANWFSERAMKALGLGRGDLEHLLWDRIMHRELVKSGKEFVVEKTPANVYMHRRIRDCWPDARFVFLLRHPESVARSWHESDPVKRPYDKAVTDVLRYLDAVEKARAAEEDGCTVRYEDITADPEREMRRLCAFLGIDYEPAMLEYGTKSGGELVRGLGDWRDNIRTGTVQPGRPLPRREEICERLRPTCEAWGYPA
>CP029601.1|AZM59471.1|1801354_1803721_-|bifunctional-salicylyl-CoA-5-hydroxylase/oxidoreductase
MTHGTAHPRGQRVAIIGGGPGGLYTAALLKRLDPGRQVTLWERNAPDDTFGFGVVLSDETLGGIEHADPQVYAALQRDFVRWDDIDIVHRGTRHTSTGHAFAALERRRLLQILHDRCRALGVDLRFRSPAPDPARLAATHDLVVAADGVNSTTREAFADVFRPRITAHRCRYIWLAADFAFDAFRFEIAETEHGVMQLHGYPFARPSPGHHPSTRPSGPQSPCASTVIVEMREEVWRAAGFDELDTDESLARCAKIFAEALGGRPLRGNNSAWTTFRTVVNERWSHGNTVLLGDAAHTAHFSIGSGTKLAVEDALALAACLREQPALDDALSAYEAERRPVVASTQRAARASLEWFENLPVYLSQPPRQFAFNLLTRSRRVTHDNLRLRDARFTGSVERAFGCPPGTPPMFTPFRLRGLTLRNRVVVSPMDMYSATDGVPGDFHLVHLGARALGGAGLVMTEMVCVSPQGRITPGCAGLYTGRQAEAWRRITDFVHAQAPGTAIGVQLGHSGRKGSTKLMWEGMDEPLDDGDWPLVAASPLPYKPDSQVPRELSRAQLTDLREQFTAAALRAARAGFDLLELHCAHGYLLSGFLSPLTNRRTDAYGGSPQKRLRFPLEVFDAVRAVWPGDRPMTVRISATDWAEGGMTAEDAVEVARAFAAHGADAIDVSTGQVVADERPEYGRSYQAPFADRVRNEAGVPVIAVGAISSWDDVNSLLLAGRTDLCALARPHLYDPHWTLHAAAEQGYEGPGVVWPPQYRAGSRRPQTGRTDAPKPRLTLGDRPAQAG

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Crispr_ID: CP029601_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_6

2748496-2748589

Orphan

Consensus_repeat	Method
CCCCGGCCGTGCACCTCCCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029601_6

>merge|CP029601|6|2748496-2748589|CRISPRCasFinder
CCCCGGCCGTGCACCTCCCGCCGACGCCGAGCCGGCCACCCCGACCGAGCGCCCTCGTCGAGCGCCCCCCACCCCTGCCGTGCACCTCCCGCCG

>CP029601|6|6|2748496-2748589|CRISPRCasFinder
CCCCGGCCGTGCACCTCCCGCCG	ACGCCGAGCCGGCCACCCCGACCGAGCGCCCTCGTCGAGCGCCCCCCA
CCCCTGCCGTGCACCTCCCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM60170.1\|2746468_2747074_-\|antibiotic-resistance-protein-MarC	unknown	unknown	gnl\|CDD\|225006
CP029601.1\|AZM64528.1\|2741676_2744136_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
CP029601.1\|AZM60176.1\|2752117_2752891_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60180.1\|2756273_2756948_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60174.1\|2750446_2751565_+\|magnesium-transporter-CorA	unknown	unknown	gnl\|CDD\|213364
CP029601.1\|AZM60177.1\|2753106_2754390_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
CP029601.1\|AZM60166.1\|2740294_2740561_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM64527.1\|2740615_2741371_-\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	unknown	unknown	gnl\|CDD\|205967
CP029601.1\|AZM60179.1\|2755031_2756165_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|378455
CP029601.1\|AZM60172.1\|2748615_2749257_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60178.1\|2754379_2754988_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377629
CP029601.1\|AZM60173.1\|2749379_2749964_-\|Suppressor-of-fused-domain-protein	unknown	unknown	gnl\|CDD\|377450
CP029601.1\|AZM60181.1\|2757172_2757613_-\|Sec-independent-protein-translocase-TatB	unknown	unknown	gnl\|CDD\|179287
CP029601.1\|AZM64526.1\|2739040_2739685_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP029601.1\|AZM60168.1\|2745077_2745980_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224349
CP029601.1\|AZM60165.1\|2739837_2740065_+\|DUF3107-domain-containing-protein	unknown	unknown	gnl\|CDD\|378634
CP029601.1\|AZM60169.1\|2746199_2746352_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60167.1\|2744277_2745081_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029601.1\|AZM60175.1\|2751588_2752104_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60171.1\|2747130_2747988_-\|phosphatase	unknown	unknown	gnl\|CDD\|223686

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM60170.1\|2746468_2747074_-\|antibiotic-resistance-protein-MarC	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	6.36568e-41
CP029601.1\|AZM64528.1\|2741676_2744136_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	9.24739e-142
CP029601.1\|AZM60174.1\|2750446_2751565_+\|magnesium-transporter-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.27193e-169
CP029601.1\|AZM60181.1\|2757172_2757613_-\|Sec-independent-protein-translocase-TatB	gnl\|CDD\|179287	PRK01371, PRK01371, Sec-independent protein translocase protein TatB.	3.29615e-52
CP029601.1\|AZM64527.1\|2740615_2741371_-\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	gnl\|CDD\|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	7.0354e-94
CP029601.1\|AZM60179.1\|2755031_2756165_+\|sodium:proton-antiporter	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.179e-130
CP029601.1\|AZM60178.1\|2754379_2754988_+\|hypothetical-protein	gnl\|CDD\|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	6.05912e-49
CP029601.1\|AZM60173.1\|2749379_2749964_-\|Suppressor-of-fused-domain-protein	gnl\|CDD\|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	2.66327e-30
CP029601.1\|AZM64526.1\|2739040_2739685_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.40936e-17
CP029601.1\|AZM60168.1\|2745077_2745980_-\|NYN-domain-containing-protein	gnl\|CDD\|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	1.9516e-06
CP029601.1\|AZM60165.1\|2739837_2740065_+\|DUF3107-domain-containing-protein	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	2.05836e-35
CP029601.1\|AZM60171.1\|2747130_2747988_-\|phosphatase	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.50178e-48
CP029601.1\|AZM60167.1\|2744277_2745081_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.97121e-15
CP029601.1\|AZM60177.1\|2753106_2754390_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	5.37063e-43

>CP029601.1|AZM60171.1|2747130_2747988_-|phosphatase
MRIDLHTHSTASDGTDTPAELVRKAAASGLDVVALTDHDTTRGHEEALSVLPAGLTLVTGAELSCRLDGISMHMLAYLFDPGEPALLAERELVRDDRVPRAHGMIAKLNDLGVPVTWEQVARIAGDGSVGRPHVATALVELGVVPSVSDAFTPQWLADGGRAYVEKHETDPFEAVRLIKNAGGVCVFAHPAASKRGRTVPESAIARLAEAGLDGIEVDHMDHDPETRARLRGLAKELGLLVTGSSDYHGSRKSCVLGEFMTDPEVYGEITRRATGAFPVPGAGGV
>CP029601.1|AZM60170.1|2746468_2747074_-|antibiotic-resistance-protein-MarC
MLDVAVFGSLFLTLFVIMDPPGITPIFLALTAGRPAKAQKRMAFQAVCVAGGVITVFGLLGHQILAYLHVSVPALMIAGGLLLLLIALDLLTGKTDEPQQTKDVNVALVPLGMPLLAGPGAIVSVILAVQKADGVTGQVSVWAAILAIHVVLWLVMRYSLLIIRVIKDGGVVLVTRLAGMMLSAIAVQQIINGVTQVIQGG
>CP029601.1|AZM60169.1|2746199_2746352_+|hypothetical-protein
MRFEIMRLDDVDGTPVDTTVVDAASVNRIVQQAAAIGQRLWIRPAETSAS
>CP029601.1|AZM60168.1|2745077_2745980_-|NYN-domain-containing-protein
MEAMNEDLAALHARIDLTNELLQRMLAEVAKTPSTHAIFVDAGYLYAAAGRLVAGTEDRRAFDLDAEGLIDALIDRARTVFADSRLLRVYWYDGARRRIHTAEQQTIAELPDVKVRLGNLNANNQQKGVDSLIRTDLESLARHRAISDAALLGGDEDLVSAVEAAQGYGARVHLWGIEAPEGRNQAEPLLWEVDSQRTLDLDFFKPYVSRRTAPAYETTTGRPTREDVRFVGAQIAAKWLVARGRETMVELLPGHPYLPGSVDQDLLVEAEGLLQYSLRGQADLRRALRDGFWDHLQGQY
>CP029601.1|AZM60167.1|2744277_2745081_+|alpha/beta-hydrolase
MDVPTAPGVTPRGVALLLPGYTGSKEDFALIQEPLAARGYRTVAVDGRGQYESDGPADDESAYAQEELARDVLAQAEALGTPVHLVGHSLGGQIARAAVILDHTPFRSLTLMSSGPGRISVSQEQRVKLLRDALAVMSMAECWQAILAMGPPEEVGGPARGIGGPELLRNRWLGTKPAQLLATGRQLCSEPDRVDELAAVPLPFHVLSGERDDTWPVPDLDEMARRLGAHRTVIDGAEHSPAADRPAPTARALAGFWDGLPPAGAVS
>CP029601.1|AZM64528.1|2741676_2744136_+|DEAD/DEAH-box-helicase
MAADVPGTVPTRPPAFASHRVHRRGSTLTTTFRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLRHVRALVLDEADEMLDLGFLPDVEKIIGFLPVKRQTMLFSATMPGAVIGLARRYMSQPTHIRATTPDDEGATVANTTQFVYRAHNMDKPEMVARILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALDLGFGDPPETYSTSPHLFSDLGIPEGTKGILPRSERTRAGLDAEELEDLGETGGRGGPRGRGGRRGDSRAERETTTRTPRRRRRTRGGAPLDEAAQQPASPAAGGAGDAEAAGTAVRTPRRRRRMRGGVPADAPSTATAPAAESAAESAVGTAEGPAVDTTAETAETPAKPRRRRTRRSAEKAAVETAAVVTESPVEEPAAAAPIVAEPEAAPATEPRRRTRKAAAKAETPTDATKVADTVEATEVTETKPRRTRKTAAKKAEAAVDTAEAVEAKPRRTRKATADIPAQTTQEPEAETAEAKPRRTRKTAAKKAEAAVDTAEAVETKPRRTRRTAAAAQALDTAEAAEAKPRRTRKATADIPAQTTQEPEAEAAEAKPRRTRKTAAKKAESEAVDEAKPKARRTRKATAAAEPAEG
>CP029601.1|AZM64527.1|2740615_2741371_-|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein
MTSSDKPENAADAPDTSAGHTGVAAMDWAAASADPQYRAAVVDLLGALAYGELAAFERLAEDAKLAPTLADKAELAKMASAEFHHFGRLRDRLAEIGEEPTLAMEPFVAAYDGFHKQTAPSDWLEGLVKAYVGDSIASDFYREVAARLDSDTRALVLAVLDDTGHGGFAVEKVRAAIDADPRVGGRLALWARRLMGEALSQSQRVVADRDALSTMLVGGVADGFDLAEVGKMFSRITEAHTKRMAALGLAA
>CP029601.1|AZM60166.1|2740294_2740561_+|hypothetical-protein
MLLEALSSAILGLALAWAAYHRLSHRLPAAALVLPTGVAGALFGAFVMKSSLGGSLPTVLLGAVIVSVASLSLLLRPAGRLRRRSATA
>CP029601.1|AZM60165.1|2739837_2740065_+|DUF3107-domain-containing-protein
MEVKIGVQHAPREIVLESGQSAEEVERVVAEALAGKAQLLSLVDEHGRKVLVPADRLAYVEIGEPAPRKVGFGAL
>CP029601.1|AZM64526.1|2739040_2739685_+|TetR-family-transcriptional-regulator
MTAIEQTDAVRPRGTRLPRRARRNQLLGAAQEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDQHCEALIQSVRQALASTTDNKQRVRATMDAYFAYVEDDGGAFRLVFESDLTNEPAVRERVDKVTNDCAEAICDVIAEDTGLSRAESMLLASGLGGLAQVVARSWLHSDRSVPRDQAVQLLTSLAWRGIAGFPLHGNEQHH
>CP029601.1|AZM60172.1|2748615_2749257_-|hypothetical-protein
MRGEPSCPKCGGRVRAPGLFSDAWQCDVHGTVHPVQPVIPPSVEALEVVVHRTKVPLWMPWPLPVGWLFTGVACAGDDRSGGRATAVACTGPGPLGGMGELILVAEELGVGLGARYAGLDGPDPGPYMNVEKPPQAKVLAAGRPTPLWHVSKTPDDRAVFAGEALGMWLWAVVWPEQSGLLMYDELVLTDLRDAGAEVELVPCGALSPRLLEA
>CP029601.1|AZM60173.1|2749379_2749964_-|Suppressor-of-fused-domain-protein
MADVLPLVEARLRTALGEPDARAAVTFLGTDRIEVLRFHEGDIVRYATLGMSARPMADPTAVIADQVKGPRAELLLSVRSGVADTDKALRPLAVLAASPQVEGVVVAPGASLDVGEPLWPGAPFTSVLVGEPGGLVEDLELDEPVDPVRFLPLLPMTPNEAAWKRVHGAQALQERWLNRGTDLRDPLRGSVALD
>CP029601.1|AZM60174.1|2750446_2751565_+|magnesium-transporter-CorA
MSMIRDLRAVVRPASRISLRKESGTYDTVRDPVTATAVVDCAIYRDGRRLETEGQLTPQEAMRLVRRDGGFVWIGLHEPNEAEFAGIAAEFGLHPLAVEDAVQAHQRPKLERYDDSLFTVFKTIHYVDHDRLTASSEVVRTSEVMCFTGRDFFITVRHGGQGSLRALRHRLQDDPELLAKGPSAVLHAIADHVVDGYIAVADAVQDDIDEVETQVFSPGRKGTPRGTDAGQIYQLKREVLEFKRAVAPLLRPMQLLSERPMRLIDPDIQKYFRDVADHVARVQEQVVGFDELLNSILQANLAQASVAQNEDMRKITSWAAIIAVPTMVCGVYGMNFDHMPETHWRYGYPLVLGVTVAICLGIHRTLKRNGWL
>CP029601.1|AZM60175.1|2751588_2752104_+|hypothetical-protein
MTSELLDRALIEEATKKSGLIWVKGPGVPSRALWHVWHEGAACVIGDGPGEQPLPGLSDGGPAEVTVRSKDKGGRLVSWSATVAELPPGSEAWEAAVAELKGKRLNAPDAETMPERWARECRVLRLEPTGALAPLPDGSLAEAPLPTPVTTRRPVPAGLPKLLLKKKRHKR
>CP029601.1|AZM60176.1|2752117_2752891_-|hypothetical-protein
MTSISQGRSRRAVLAGAACALLVTGTALTGCSEDPNEGTNGVGKLPADQIQGRAQQAAESVGTVRLHGTVVTSGRAYTLDMRLKEEGGIGSVTTKGETFRLLRIDDELYLKAGAEFWGRGSGEKGKDDGKDGGKADAAAADKLAEKYVKVPQGDPSYKKFIGFTDKSVLLSGLLTVHGDLATDGHHEQSGLRTIRVTGDQGSGGTLDVSLEGKPYPVRLVRAGKAGTLTFSDWGTDFPLKKPAKDETLDYGKQLPTS
>CP029601.1|AZM60177.1|2753106_2754390_+|magnesium-transporter
MAAGAPRFFVSHLSGVAVFDPAGDQVGRVRDLVVILRPGRRPPRLLGMVVELSTRRRIFLPMNRVTAVQSGQVITTGVLNVRRFEQRPTERLVFGELLDRRVTLVETGEEVTVLDLSVHQLPARREWEIDRVFVRKGKKGGAFRRGKGEALTVEWSAVTGFSLEEDAQGAENLLATFEQLRPADLANVLHHLSPKRRAEVAAALDDDRLADVLEELPEDDQIEVLGVLAEERAADVLEAMDPDDAADLLGELPEADKERLLGLMQPADAADMRRLMSYEEHTAGGLMTTEPIVLRPDATVADALARIREPDLSPAHAAQVYVCRPPEETPTGKYLGTVHFQRLLRDPPYTLVGSMLDDDLQPLEPDAALPVVAGFFATYDMVAAPVVDEAGSLLGAVTVDDVLDHMLPDDWRENEFHLGEEVAPDGS
>CP029601.1|AZM60178.1|2754379_2754988_+|hypothetical-protein
MAPERDGTRERVPVGATAAGRPRTPRLDQPRPPRRRLLPEWDPDAFGRLSERIARFIGTGRFLAWMTVVIILWVLWNVSMPKSLRFDEYPFIFLTLALSLQASYAAPLILLAQNRQDDRDRVNLEQDRKQNERSIADTEYLTREIAALRIGLGEVATRDWIRSELQDVVKELEGRHNGHKDHHGSFPAMRAERPPGRDAEDR
>CP029601.1|AZM60179.1|2755031_2756165_+|sodium:proton-antiporter
MATEDAVREALATVNDPEINRPITELGMVKSVEIGADGAVAVTVYLTVSGCPMRDTITQRVTDAVSRVDGVTRVDVTLDVMSDEQRKELANALRGGQAEREVPFAKPGSLTRVYAVASGKGGVGKSSVTVNLAAAMAADGLKVGVVDADIYGHSVPRMLGADGRPTQVENMIMPPSANGVKVISIGMFTPGNAPVVWRGPMLHRALQQFLADVYWGDLDVLLLDLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGSIAVQTHQKIVGVVENMSGLPCPHCGEMVDVFGTGGGQTVADGLTRTTGATVPVLGAIPIDVRLREGGDEGRPVVLSDPESPAGSALRSIAGKLGGRQRGLAGMSLGITPRNKF
>CP029601.1|AZM60180.1|2756273_2756948_-|hypothetical-protein
METTSSAVAQAPAAEDGQQVPSARRTVDGYLRAPFPWYGLDEAFTGPRWLMQVGLAADGAVEHGSVGHGDEPSVRSEFAAGSDQDAKEKFAVVVTVAANPVRRSADGTGLLEATSVSSAAWLAGVGLLSFTWPGQMDHTLRDDWLEQQTETAWVLADDLDGADWSTLSLPVDGVPTPFHYRESEFGWVLAGSTGAGVHVGAYGRGMSAYGLGFAVVKDITAYEA
>CP029601.1|AZM60181.1|2757172_2757613_-|Sec-independent-protein-translocase-TatB
MFNDIGPLELVTLIVLAVLVFGPEKLPKVIQDVTRTIRKIRDFSESAKQDIRQELGPEFKDFDFEDLNPKTFIRKQLDNDDLGLKEIRNGFDLKKEMAEVADAVHGRDTEPATPSPAPSSGGRVDMTKKPEIPAADDRPPFDADAT

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Crispr_ID: CP029601_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_9

3198853-3198930

Orphan

Consensus_repeat	Method
GGGGGTGTTGCACAGCCGGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029601_9

>merge|CP029601|9|3198853-3198930|CRISPRCasFinder
GGGGGTGTTGCACAGCCGGCGCTGCTGCAGGTGCGCCTGCGTTGGTGCGAACCAGGGGTGTGTTGCACAGCCGGCGCT

>CP029601|9|9|3198853-3198930|CRISPRCasFinder
GGGGGTGTTGCACAGCCGGCGCT	GCTGCAGGTGCGCCTGCGTTGGTGCGAACCAG
GGGTGTGTTGCACAGCCGGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM60529.1\|3193908_3194280_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
CP029601.1\|AZM60539.1\|3208008_3210324_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|376363
CP029601.1\|AZM60535.1\|3202308_3203562_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378217
CP029601.1\|AZM60541.1\|3212652_3213510_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
CP029601.1\|AZM60526.1\|3189990_3191157_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
CP029601.1\|AZM64568.1\|3188767_3189982_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP029601.1\|AZM60538.1\|3205703_3206186_-\|capsule-biosynthesis-protein-capC	unknown	unknown	gnl\|CDD\|379469
CP029601.1\|AZM60534.1\|3201532_3201976_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP029601.1\|AZM60530.1\|3194905_3196753_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
CP029601.1\|AZM60527.1\|3191289_3192723_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
CP029601.1\|AZM60531.1\|3196839_3197637_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60540.1\|3210468_3211647_-\|PGA-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|378215
CP029601.1\|AZM64569.1\|3194314_3194779_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378794
CP029601.1\|AZM64570.1\|3211760_3212642_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM60537.1\|3204549_3205638_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
CP029601.1\|AZM60525.1\|3188268_3188796_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
CP029601.1\|AZM60533.1\|3200978_3201491_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP029601.1\|AZM60536.1\|3203636_3204518_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235476
CP029601.1\|AZM60532.1\|3197811_3198801_+\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
CP029601.1\|AZM60528.1\|3192848_3193697_-\|B/F/G-family-RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|274373

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM60529.1\|3193908_3194280_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	2.63581e-48
CP029601.1\|AZM60539.1\|3208008_3210324_-\|HAMP-domain-containing-protein	gnl\|CDD\|376363	pfam00672, HAMP, HAMP domain.	0.000109451
CP029601.1\|AZM60535.1\|3202308_3203562_-\|hypothetical-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	2.91057e-08
CP029601.1\|AZM60526.1\|3189990_3191157_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.59559e-153
CP029601.1\|AZM64568.1\|3188767_3189982_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.60652e-24
CP029601.1\|AZM60538.1\|3205703_3206186_-\|capsule-biosynthesis-protein-capC	gnl\|CDD\|379469	pfam14102, Caps_synth_CapC, Capsule biosynthesis CapC. This family of proteins play a role in capsule biosynthesis. They are essential for gamma-polyglutamic acid (PGA) production.	8.29714e-27
CP029601.1\|AZM60534.1\|3201532_3201976_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	7.53304e-104
CP029601.1\|AZM60530.1\|3194905_3196753_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029601.1\|AZM60527.1\|3191289_3192723_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	2.06169e-59
CP029601.1\|AZM60541.1\|3212652_3213510_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.07187e-106
CP029601.1\|AZM60540.1\|3210468_3211647_-\|PGA-biosynthesis-protein-CapA	gnl\|CDD\|378215	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	3.07274e-80
CP029601.1\|AZM64569.1\|3194314_3194779_-\|hypothetical-protein	gnl\|CDD\|378794	pfam12028, DUF3515, Protein of unknown function (DUF3515). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 166 to 214 amino acids in length. This protein has a conserved RCG sequence motif.	2.87836e-08
CP029601.1\|AZM60537.1\|3204549_3205638_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	3.22034e-08
CP029601.1\|AZM60525.1\|3188268_3188796_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	4.93643e-48
CP029601.1\|AZM60533.1\|3200978_3201491_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.19416e-73
CP029601.1\|AZM60536.1\|3203636_3204518_+\|hypothetical-protein	gnl\|CDD\|235476	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH.	0.00534384
CP029601.1\|AZM60532.1\|3197811_3198801_+\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
CP029601.1\|AZM60528.1\|3192848_3193697_-\|B/F/G-family-RNA-polymerase-sigma-70-factor	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	1.37178e-108

>CP029601.1|AZM60532.1|3197811_3198801_+|type-I-pantothenate-kinase
MISPVSSMPRSAHRQRPEATPYVDLTRSEWSALRDKTPLPLSAAEVERLRGLGDVIDLDEVRDIYLPLSRLLNLYVGATDGLRGALNTFLGEQGSQSGTPFVIGVAGSVAVGKSTVARLLRALLSRWPEHPHVELVTTDGFLLPTSELQKRGLMSRKGFPESYDRRALTRFVADIKAGKDEVTAPVYSHLIYDIVPGEKLTVRRPDVLIVEGLNVLQPALPGKDGRTRVGLADYFDFSVYVDARAEDIERWYLNRFKRLRETAFQDPSSYFRKYTQVSEEEALDYARTMWRTVNKPNLVENIAPTRGRATLVLRKGPDHKVQRLSLRKL
>CP029601.1|AZM60531.1|3196839_3197637_-|hypothetical-protein
MTSTAVRRTALVASAAALALLATACGGSSDDGGTAGDEPAGTERSASADASAGTGDALTAAELEKVALAQDDVENGKVVTKVPADDDVAKDKIETDDEACLPLVHAQAAVAQGEAAADVKRSWTGQDESPSASAGPDGQDMIEIQVNKILLNVASYADGGAEQALKGLNAAAEKCAGGFTATVGSDEMRIAKVTTSAAPEGGDEAFAATLGVTTGADSSAPMKVVVVRKGSTLASFSVVNLSSMVTGEDFEVPTAVVDAQVAKLG
>CP029601.1|AZM60530.1|3194905_3196753_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYVGPQSALDVVTAGLKRLEYRGYDSAGVAVQADGGLATAKRAGKLVNLEKELADRPLPAGTTGIGHTRWATHGGPTDANAHPHIDNAGRVAVVHNGIIENFAALREELAERGHELRSETDTEVVAHLLAEEFSSCADLAEAMRLVCRRLEGAFTLVAVHADEPDVVVGARRNSPLVVGVGQGEAFLASDVAAFIAHTRDAIELGQDQVVELRRDAVTVTDFDGGTADVRAYHVDWDASAAEKGGYASFMLKEIAEQPKAVADTLLGRIDGSGALSLDEVRIPAGVLREVDKVVIVACGTAFHAGLIAKYAIEHWTRIPCEVELASEFRYRDPILDQQTLVVAVSQSGETMDTLMALRHAREQGAHVLAICNTNGSTIPRESDAVLYTHAGPEVAVASTKAFLTQLVACYLVALYLGQVRGTQWADEIRAVVRDLSLISGAVDRVLGTMEPVRELARSLADKDTVLFLGRHVGYPVALEGALKLKELAYMHAEGFAAGELKHGPIALVEDDLPVVVVVPSPRGRSVLHDKIVSNIQEIRARGARTIVIAEEGDETVVPYADHLVRIPVTPTLLQPLVATVPLQVFACELATARGNEVDQPRNLAKSVTVE
>CP029601.1|AZM64569.1|3194314_3194779_-|hypothetical-protein
MRVAVGGLSAAALVAGLLVVDSHRIDSAPRGGDPECSEVVDRLPEKAGGRSRDWALGDGVASWGDRSLVLRCGVAELQPNVNLCVTADGIDWVLDEDRLKADGVSVLTTYGRSPAVEVTYDGPRQEVGGILVDLNGSVEPIAQQRKCVGVGDIL
>CP029601.1|AZM60529.1|3193908_3194280_-|holo-ACP-synthase
MSIIGVGIDVAEVERFAASLERTPGLARRLFLESELLLPSGEQRGVASLAARFAAKEALAKALGAPAGLYWTDAEVWCEDSGRPRLRVTGTVAARAAELGVRSWHVSLSHDAGVASAVVVAEG
>CP029601.1|AZM60528.1|3192848_3193697_-|B/F/G-family-RNA-polymerase-sigma-70-factor
MTSTMARTDRALSVTELPEVAEPGQVAPQDARELSKQFFRRLTELEEGTHEYQYARNTLIEMNMSLVRYAAGRFRSRGPEEMEDIVQVGMIGLIKAIDRFELSREVEFTSFAIPYIVGEIKRFFRDTSWSVHVPRRLQEARVQLARATEELRSRLGRTPTTAELAQLMSLSEKEVDEARVASNGYNSASLDAAIGSEPDGESVLADFIGTEDAALELVEDFHALAPMIADLDERERKIVHWRFVEELTQAEIGEQLGCSQMHVSRLLSRTLKRLRAGMLSTT
>CP029601.1|AZM60527.1|3191289_3192723_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MRTAYSVETVRAAERELMARLPEGALMQRAAAGLAAACAEVLGRVYGSRVVLLVGSGDNGGDALYAGARLARRGAGVSAVLLAPERAHAGGLAALRRAGGRVTGASGAEGLVERADLVVDGIVGIGGTGGLRPQAVPLAEAAARGRAAVVAVDLPSGIEADSGEVRGRAVRADLTVTFGTHKPGLLVDPAREHAGSVRLVDIGLSLPPEPELEALQHADVARLLPVPGAESDKYRRGVVGVAAGSGRYPGAAVLAVAGALRGGAGAVRYVGPAGRDVIARFPETLVSDRGPKHAGRVQAWVTGPGAGDDAATVAEVLTADVPVLIDADGLRLADVAAVRARRAPTLMTPHAGEAAALLGVEREEVESRRLSAVRELAERYRATVLLKGSTTLVAAAGGGPVRVNPTGTSWLATAGSGDVLSGLGGSLLAAGLSTVDAGSVAAYLHGLAGRLEADGAPVGAQDVASGIVRAWRSVVRG
>CP029601.1|AZM60526.1|3189990_3191157_-|alanine-racemase
MNETVRARAEIDLAALRANARALRERASGAALMAVVKADGYGHGAAACARAAVEAGAAWLGTATPQEALALRAPGAGLPDDVRILCWLWTPGGPWREAIEAGIDVSLSGRWALDEVTRAARQAGRPARVQLKADTGLGRGGCLPADWAELVAGALRAEAEGLLRITGLWSHFACADQPGHPSVPAQLDRFREMVAYAERQGVDPEVRHIANSPATLALPESHFDLVRPGIALYGVSPSPEIGTSADFGLRPVMTLAASLALVKRVPGGHGVSYGHHYVTPGATTLGLIPLGYADGIPRHASSTGPVLVEGKWRTVAGRVAMDQFVVDLGGDDPGPGAEAVLFGPGDRGEPTAEDWAQAAGTIAYEIVTRIGTRVPRVYTDDAHEGSGR
>CP029601.1|AZM64568.1|3188767_3189982_-|alpha/beta-hydrolase
MAGAAAAAAEASRGGWRRATGVAGIALGVLATGAAAGVAIERMTVGRGMRKKARLALDSAGPYGSLRGTPGRAYADDGTELYYEVDDADPDAEASPARRRRLFGRREPAPVTVVFSHGYCLNQDSWHFQRAALRGVVRTVYWDQRSHGRSARGAAQTESGEPVTIEQLGRDLKAVIDAAAPEGPLVLVGHSMGGMTMMALADQYPELIRDRCVGIALVGTSSGRLGEVNFGLPMAGVNAVRRVLPGVLKALGQRAELVERGRQATADLFAGIIKRYSFASRDVDPAVARFAERMIEGTPIDVVAEFYPAFNEHDKAEALAHLAGRPVLVLAGVDDLVTPSEHSEEIAGLLPDAELVLVPDAGHLVMLEHPEQVTDRLADLLARVGAVPAAATVGGYGSSTAEPG
>CP029601.1|AZM60525.1|3188268_3188796_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MEAAPQNPAEPPQAAPSVELTVTSPEQMRELGRRLAKLLRAGDLLLLSGELGAGKTTLTRGLGEGLGVRGAVTSPTFVIARVHPSLGDGPPLVHVDAYRLSGGLDEMEDLDLDVSLPESVIAVEWGEGKVEELTDDRLQIAIHRGVGDTTDEVRHVTVTGVGERWAGTGLSALSA
>CP029601.1|AZM60533.1|3200978_3201491_-|30S-ribosomal-protein-S9
MAETTAEQPLEELDIDSYTTESEVPVEGEYTSESMASRFGEPQPAAGLGRRKNAIARVRIVPGSGKWKINGRTLEDYFPNKVHQQEVNEPFKVLELEDRYDVIARIAGGGVSGQAGALRLGVARALNEADVDNNRGPLKKAGFLRRDDRAVERKKAGLKKARKAPQYSKR
>CP029601.1|AZM60534.1|3201532_3201976_-|50S-ribosomal-protein-L13
MRTYSPKPGDVTRQWHVIDAQDVVLGRLASTAASILRGKHKPIYAPHVDTGDFVIIINADKVHLSGNKRTQKMAYRHSGYPGGLRSVRYDELLEKNPEKAIEKAVKGMLPKNSLGRQMLSKLKVYSGDQHPHAAQQPVPFEITQVAQ
>CP029601.1|AZM60535.1|3202308_3203562_-|hypothetical-protein
MVTGKSDISGWLVRPAGGCLWAGLAAVLGALTVHTVLVTSDGGMDNAIVVDAARTWLDGGSPYDDRHFLYFPSAVMAAVPQALLPRSVLDVLAPVTVVLALVAGWVCALLLHRVPLRSRLAALGLLGLAACFAPFGQLVRLGNWTVTAVLALPLCLLLVSRGRWAAGGAVIGVAVALKPLLAPMALLFLFARRWTALALVVLVPAVTSVVAALFLPDPTGFLTRTLPFLVTGDDAFLRLYEASPAAVLPRLGMPQGPATALALLAGAAGVVCAYRRWRGPGPASLRLAETSAALMLSAFLVSRPSYNHYLLVVLPLLLAGLPYAGAVARRPWFWLALVPQLPGVTWPWLEAGTRRAFRDALTLGVLAVTVAYHCVRGAGGAEAAEGAEAAEGGEGAQAAEGVEAAEVRGGRGGRGGG
>CP029601.1|AZM60536.1|3203636_3204518_+|hypothetical-protein
MSFGQGGPSQQWDPWTPNSQQPWSGGGASQSPDWAALADASEARAKRRRLLFIGGGALATVAIGTAVAVAVVSANGSNQASPGASSQLPGASDLPSPTGTVPSFAPTSAPPPLDPKDFVASAKKDKAPLSPDILFPGTQLTMGETVYKKGPTADTKNCASAAKATLPKVLTDNDCTRLIRVTYTKDKVAVTVGVAVFDTEAQATKAKKQADKKSIVKSLSGGGVKDFCVGAICRSTTNSYGRYAYFTLAGFTDGKDVTTKDKAVFATGDDLQEFTFRQIRRRGEAQASAAANE
>CP029601.1|AZM60537.1|3204549_3205638_-|hypothetical-protein
MTGKAKKKSRPVVSGLVVLGLVATSGYLTLELRKQEAPGVTEVKNVGVLNGGGGSGDGASKDKGGEKWSRLENPARSVLRDGSGRIQAVFTDGARTATLTGPARTFEEPASTSSKVSTTDWVRLMPEPWKKGAEKEKWFKEWYAEYANSKKDDLFAFAFQYVAGAPVKKDEQGIAYAGDANFGPLNTTGAEGGDLRLEQSDFYDYLGVPYPFRDGATGTPEAMRAKSLDCSGFIRMVFGYRARYPLMSSDTSGDGLPRTANGMARSKEGADVLPLAGITPKDRPSNIDQLQPGDLVFFKLDTRTKERLDHVGMVLGHDTEGHLIFVSSREEVNGPTIGDIGGVSRLDGNGYYAKTLRSAKRL
>CP029601.1|AZM60538.1|3205703_3206186_-|capsule-biosynthesis-protein-capC
MTTAALTPEMAALGIAIGLFFSLLCYLTTNLSPGGMITPGWIALTLIEDLQRAAMMVGVTALTYAGTKIMQRLVILYGKRLFAAVVLLGVLLQATVMIVLSIEFPLMYGNQTLGFIVPGLVAYQMVRQPKGATLLATGTVSLMAYIVVAAGLLLGVMPTV
>CP029601.1|AZM60539.1|3208008_3210324_-|HAMP-domain-containing-protein
MTSSRAANAGRAGRRSRRRRADMPLLGGIRPPIALLCLLIVALAGLTAKVLGPSGEAVVPEAVLTSQKHFAEDGAIALRASIDERVTDLQRTAAALSKGERAEPEDVLSDLGRTYQKWTGTTVLDLETGDVLAARGERIPLAWIDKDVLTGEYALAPRMVRLETGDVRLMTMAVLDRKEGPQHLLIASNSLAVPNISMGPFRTMAVVARDGEVLATAGFEESEALNSDKQRTELDFLQKQMSRLSGQAATRTEEHPVTAREPGSHGYPGVSGTLVGDSYNGRITTAGYASLASSDPAEKDSVAAGLGLTVVAMLPVVQQQGAADTGRELYGLVAAGALIALGLLAAAVLWVAVQRPLLRMFLESRRLARGDLTRPVAIPRWGEAARIGTALERLRTQLIGDGDGAGSGTGRRKARFGVRVPLAVTAVLLLLWCVPVGLLLNRTDDSVSVPATMVNDQRERTDLVADRVRRALNEAQADLVSTSRLIDVDKPDAAGELLSDALREHTRYQALYVVDGSGEVLARAGGDPHGWSDDEDLPLVRVSGKGGKKPVIQAGAPVPEEKGVTLVGEVRVEFLNSLLKRPGLGELRVVNAEAETLAASDGFRAFEGLPGDTLPDLVRAAGVPVGAGPVENGLLLRDGGSVTVAAAAPFSGGGVASDLGWTVVSWQNADSFEIAAYEREDRSVLAGLLGLAAIVICLGWVHLVVARPLRALAASAEKLAGGDLKTVHFPRYQDEVGAVVRSLELIRQQLQARRNNQARRPAEPRLGAGGR
>CP029601.1|AZM60540.1|3210468_3211647_-|PGA-biosynthesis-protein-CapA
MGRTPATLVAAMSLLAGCGSAVAETQAEAGGRSFTVAAAGDILIHPELIEQAAKDAKETGEGEAGLDFRPLLAGVKPVISEADLAICHMETPVGKPEGPFEGFPEFLVPPQILTAVKDVGYDTCSTASNHTYDHGMKGVRNTLDALDKLGLGHTGSARTAKEAEKINIREVKGVKVAHLSYSWESFVHPTPEDKPWILNKTSSSAIRKAEARAREKGAEVVILSVHWGAEYYNEPSTAQLNLAQWISEETGIDLVIGHHSHVVQPIQKVGDTWVAYSLGNQVARHSSPAGITEEGVIGWFEFRESADGWGVSARHRTTLVEIPPELQPGEKPADGAVVDHRVRDVRQSLEKPGDLSEERLSRLRLAEQRTSGFLYNRGAPGGDGLKPLPLEG
>CP029601.1|AZM64570.1|3211760_3212642_+|hypothetical-protein
MPLALTACQKASRSPSKDTDPSARELVDLRSHVLNYTEELSPDGPYSAPDEEERAQLAEGVGRLLEGDAREAERLLAPIGLGVTRLTDTATGRRYDEIAATGEESASWGRLYVTADSRLRWNAQVPHPVADRDTEALGVRLLEDVPGGALVLAGAHRRAGPGDAADVAHREDSAFHTVVVELQQRGVPGVQLHGFAESTADHDAVVSTGAAESAPEEVSALADRMEADGLRVCRGWSARCPLEGKRNVQGRSAQREHATFVHLELAPSARGDGRDAEEAADAVSGLLSRWAQD
>CP029601.1|AZM60541.1|3212652_3213510_-|tRNA-pseudouridine(38-40)-synthase-TruA
MSDDVQPGFVRVRLDLSYDGTEFSGWARQAGGRRTVQGEIEDALRTVTRSGGTTYELTVAGRTDAGVHARGQVAHVDLPREVWAEHHPKLLKRLAGRLPRDVRVWALREAPAGFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKRREGATTIRTLQELSLARGADGIITATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHVVRPHGLTLEEVGYPADELLAARSREARNKRSLPADRCC

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Crispr_ID: CP029601_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_12

4313453-4313532

Orphan

Consensus_repeat	Method
CCCGGCCCACCCCAACGCGGCCAGCGT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of CP029601_12

>merge|CP029601|12|4313453-4313532|CRISPRCasFinder
CCCGGCCCACCCCAACGCGGCCAGCGTCCACGCGCCGGCTGTACAACACCCCACCCGGCCCACCCCAACGCGGGCCAGCG

>CP029601|12|12|4313453-4313532|CRISPRCasFinder
CCCGGCCCACCCCAACGCGGCCAGCGT	CCACGCGCCGGCTGTACAACACCCCA
CCCGGCCCACCCCAACGCGGGCCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM61409.1\|4313595_4314339_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP029601.1\|AZM61411.1\|4316266_4317958_+\|PAS-sensor-protein	unknown	unknown	gnl\|CDD\|369272
CP029601.1\|AZM61407.1\|4307404_4308646_-\|L-2-hydroxyglutarate-oxidase	unknown	unknown	gnl\|CDD\|183292
CP029601.1\|AZM61402.1\|4301124_4301784_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029601.1\|AZM61404.1\|4303967_4304990_+\|peptidase	unknown	unknown	gnl\|CDD\|366703
CP029601.1\|AZM61416.1\|4328352_4329297_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP029601.1\|AZM61406.1\|4306516_4307347_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
CP029601.1\|AZM61405.1\|4305055_4306456_-\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|379143
CP029601.1\|AZM61412.1\|4318012_4319287_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
CP029601.1\|AZM64673.1\|4326398_4327760_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP029601.1\|AZM61403.1\|4301902_4303036_+\|5-amino-6-(5-phosphoribosylamino)uracil-reductase	unknown	unknown	gnl\|CDD\|180169
CP029601.1\|AZM61417.1\|4329414_4330362_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP029601.1\|AZM61408.1\|4308712_4310137_-\|MFS-transporter	unknown	unknown	unknown
CP029601.1\|AZM61410.1\|4314713_4316093_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
CP029601.1\|AZM61413.1\|4319409_4319958_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP029601.1\|AZM61415.1\|4327767_4328316_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029601.1\|AZM64672.1\|4310875_4312999_+\|asparagine-synthase	unknown	unknown	gnl\|CDD\|223444
CP029601.1\|AZM64671.1\|4299376_4299664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378610
CP029601.1\|AZM61414.1\|4325727_4326402_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029601.1\|AZM61401.1\|4300081_4301095_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM61409.1\|4313595_4314339_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.78129e-10
CP029601.1\|AZM61411.1\|4316266_4317958_+\|PAS-sensor-protein	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.25033e-50
CP029601.1\|AZM61407.1\|4307404_4308646_-\|L-2-hydroxyglutarate-oxidase	gnl\|CDD\|183292	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase.	0
CP029601.1\|AZM61402.1\|4301124_4301784_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.26734e-66
CP029601.1\|AZM61404.1\|4303967_4304990_+\|peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	8.90699e-36
CP029601.1\|AZM61416.1\|4328352_4329297_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.72045e-32
CP029601.1\|AZM61406.1\|4306516_4307347_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	2.7707e-95
CP029601.1\|AZM61405.1\|4305055_4306456_-\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	1.88838e-51
CP029601.1\|AZM61412.1\|4318012_4319287_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.20679e-65
CP029601.1\|AZM61415.1\|4327767_4328316_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.89544e-12
CP029601.1\|AZM61403.1\|4301902_4303036_+\|5-amino-6-(5-phosphoribosylamino)uracil-reductase	gnl\|CDD\|180169	PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated.	5.94297e-43
CP029601.1\|AZM61417.1\|4329414_4330362_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.71397e-37
CP029601.1\|AZM64673.1\|4326398_4327760_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.76515e-34
CP029601.1\|AZM61410.1\|4314713_4316093_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.22849e-101
CP029601.1\|AZM61413.1\|4319409_4319958_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.08805e-19
CP029601.1\|AZM64672.1\|4310875_4312999_+\|asparagine-synthase	gnl\|CDD\|223444	COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism].	8.36657e-06
CP029601.1\|AZM64671.1\|4299376_4299664_-\|hypothetical-protein	gnl\|CDD\|378610	pfam11239, DUF3040, Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	1.90659e-09
CP029601.1\|AZM61414.1\|4325727_4326402_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.17154e-71
CP029601.1\|AZM61401.1\|4300081_4301095_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.1172e-50

>CP029601.1|AZM64672.1|4310875_4312999_+|asparagine-synthase
MRWLVGWSSTAAGAVGFGPTGSAGATGTDGETVHPVGSQLLWGDPDPLWAVGDWRPDEVRVVKADDQTRIAVLGTCAATDEQLRVALFAARGGALRHLTAWAGSYTAVVQVGRRVTVCGDLAGARPVFYTPWAGGTAYATAALPLADLIEANLDFGHLAALLAAPDVPAALHDSTPYDGVKRIPPGHALILRAGAREIAGYEPVASLAVAAPTADPERAVDAVRDALVEAVRTRLAAPRHVPGADIDPGPVPGMGPAERRAARGTPVPGIGADLSGGPASGALALLAAGLPGMPGTVLGHGTGAGERLLAVTFNDLAAGGAAGRDEGELERAVALAANPRLHHVVVTGEESTLPYVELDGPLTDEPGPSLVTAARHRARLAAGSADHFTGYGAKQVLDAHPARLADLLMDRKRRHLVRPVAALAKADGSVMVPARVYAAARRLARTPYRAGLESLAERLLHRRLDDDGPGAADASLAALTWGRPGPAARWLTGEALAEVSVRLQASTRRSDVGPGQRPGDFRARAALARHAADLRVLEQAAEVRSQRLHAPFLDNQVVRVCRALPEALRVQPGARASILRSVLEGAGVRELPAGWGTPGAATSAAAAARAGLRVATGSLMSLFDTPLLAEAGLVEARVVRKALRGAAEGEPLPLDGLADLVALEVWLRRLLARRGTCWTGTPARQRAVPGGIAPQRGALGAGAAGPR
>CP029601.1|AZM61408.1|4308712_4310137_-|MFS-transporter
MSREQRGPNEKLGAVLALAGISNAGLARRVNDLGAQRGLTLRYDKTSVARWVSKGMVPQGAAPHLIAAAIGQKLGRPVPLHEIGLADADPAPEVGLAFPRDVGQAVRSATELYRLDLAGRRAGSGGIWQSLAGSFAVSAYATPASRWLITPADSSVAREANPADGSGAPLKVGHSDVQKLREAAEDARRWDSKYGGGDWRSSMVPECLRVEAAPLLLGSYSDDVGRSLFGAAAELTRLAGWMAFDTGQQEAAQRYYIQALRLARAAADVPLGGYVLASMSLQATYRGFGDEGVDLAQAALERNRGLATARTLSFFRLVEARAHARAGDAQAAGAALKSAESWLERSRPGDSDPTWLGFYSYDRFAADAAECYRDLKAPRQVRRFTEQALSRPTEEFVRSHGLRLVVSAVAELESGNLDAACEQGVRAVEVAGRISSARTTEYVKDLLHRLEPYGDEPRVVELRERARPLLMTTA
>CP029601.1|AZM61407.1|4307404_4308646_-|L-2-hydroxyglutarate-oxidase
MREVAQVTQVVAGSYDCDVLVVGGGIVGLSTAYAIGRAAPGTRVTVLEKEAGPARHQTGRNSGVIHSGIYYRPGSLKARYAVRGAAEMVKFCAEYDIPHAVTGKLIVATEREELPRLHALAQRGRENGLTVRELSGAQIAEYEPEVEGLAALHIGTTGICDFGAVARRLAETSGAEIRYGARVVRVDRRPGRGAAVLTAAGDIVRGRVLVNCAGLHCDEIARRTGDEPGARIVPFRGEYYELARPELVRGLVYPVPDPAFPFLGVHLTRGVDGGVHVGPNAVPALAREGYDWRTVRPRELGATLSWPGSWQLARRHWRYGTGELRRSLSKPAFARAVRRLLPAVREEDLVPTAAGVRAQAVLRDGTLADDFLIQEAPRAVHVLNAPSPAATASLPIGREIARRAMAQLTPGGG
>CP029601.1|AZM61406.1|4306516_4307347_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSTPEAPHSAPAPGVSIRRTRAKGEPRFPDGPKADPAGSHFERRIRSFQPRRSRVTAGQADALQRLWPVWGFDIDGSGPLDLGAFFGNGNPVVLEIGFGMGEATAAMAAADPGTNVLAVDVHTPGQGNLLNLAERQGLANIRVGNGDAIILLREMLTPDSLDGLRVYFPDPWPKKRHHKRRLIQPEFLTLAAARLRPGAVVHCATDWEPYAEQMLEVLTAHPAFENTQADGGFAPRPEFRPLTRFEAQGLDKGHVVNDLLFRRVPHQERTGHRTEE
>CP029601.1|AZM61405.1|4305055_4306456_-|PrsW-family-intramembrane-metalloprotease
MASSPPYPTPTGAASGGALRNAHWWQRPWVRYGALITLLTLSGLVILALVREQTGTEGFLVGLGLAVLPVPLLLAAFRWLDRVEPGPWRNLLFSFAWGACAAALIAIVANSFATQWIATTTADPTGADTLGATVIAPVVEESAKAAAVLLVFLFRRRDFTGILDGVVIAGVTATGFAFTENILYLGTAHGADQLTGDSGIASVTAATFFVRIVMSPFAHPLFTVLTGIGFGIAALSTDRQRFRRVLLPPAGLLLAMGMHALWNGSTTLGQYGFIAVYAAFMVPAFGLLTWLVVWTRQRELRTVRTELPAYAAAGWLTPAEPFALGSMRARRLARQYARRYGGKPAARAVAQYEAYATSLAFLRHRGRLGRAGTDFVTRERELLLELWHRRGAARPALDHAARDIAPPVRVAPAPWPVHGPHGHPPYGHPAHGRPPYGHPYPAYDPGAPTTPDGRVRRAPKTPDRQP
>CP029601.1|AZM61404.1|4303967_4304990_+|peptidase
MASNPPAPEAPFKPSDTFVYGGDRADEGPFEEWNPTAESIRPVRGRHRVAKQRGGGLARSSTVLGVGVIAAVGAGGMASAQTGKPPVSISIPDLPNVGSLISDEETPEGSATPLSSLGVATTEAEEGTTEGAGEALRTRIMAQVEQQQSQAETKAAAEAAAKAEKQAAEAAAKAEKEAKAKAEAAKKKAEEEAAKKAEAERLAELARQYTLPTSSYTISSTFGQAGAYWSSGQHTGLDFAAPTGTLIKAVHTGTITSAGWDGSYGYKTVLTLEDGTEIWYAHQSSISVSVGQKVNTGDVIGRVGSTGNSTGAHLHLEVHPGGSSSGIDPMAWLQSKGLTP
>CP029601.1|AZM61403.1|4301902_4303036_+|5-amino-6-(5-phosphoribosylamino)uracil-reductase
MPRPYVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRACVDAILIGAGTIRADNPRLLVNSPERRAARVAGGKAEYPLKVTVSGSGELDPAARFWHTGGEKVLYTTDRGAERAHALGIAADVVPLGPELDWRRLLEHLGGVRGVRRLMVEGGGRVHTQLLTQGLADELQLVLAPLFVGDADAPRLFGPGSYQGGRLRLVETRPVGDVVLMRYEPTAPGTGALPSAADRHWLALACELAAQCPPSRTAFSVGAVVVAADGTELARGHSREGGDPVVHAEEAALAKVDPADPRLTGATVYSSLEPCARRASRPAPCARLILDAGIRRVVTAWREPDTFVAGADGSAVLAQGGATVVVLPELENRAKAPNAHLTGD
>CP029601.1|AZM61402.1|4301124_4301784_+|DNA-binding-response-regulator
MTEQAPTRILLADDHALVRRGVRLILDGEPDLTVVAEASDGVEALEQAREHRPDLAILDIAMPRLTGLQAARELSRTSPDTRILILTMYDNEQFFFEALAAGASGYVLKSVADQDLVEACHATMRGEPFLYPGAVNALIHNYLDLAREGRTLPAKAITDREEQILKLVAEGHTSQQIADLLVISPKTVERHRANLLAKLGLKDRLELARYAIRVGLIEP
>CP029601.1|AZM61401.1|4300081_4301095_+|sensor-histidine-kinase
MPLFWRIFMLNAVVLVVATALLLGPVTVSTPVLLTEAAVLAVGLAAMLVANALLLRFGLAPLQRLTRAMTTTDLLRPGHRPEVGGRGEIADLITTFNTMLDRLEDERATSSARALSAQEGERRRIAQELHDEVGQSLTAVLLQLKRAADHAPTELGEELRQVQETTRASLEEIRRIARRLRPGVLDELGLASALKALATEFGGSGTGLGVQHCLAADLPELDRETELVIYRVAQEGLTNTVRHSGARRAEIALSPAPGGVLLRVRDDGRGIAGAAEGAGIRGMRERALLVGADLSVEPGPGGGTEVRLAVPVPARFPAHALIPVGGPSMPAHAPPPP
>CP029601.1|AZM64671.1|4299376_4299664_-|hypothetical-protein
MPQSSDDRLVGLAARLEHEDPRFARSLSTGQPTRPREYRRTGAWWALIIGVAMLIAGVIVPDGLLIAAGLVLSGIAVQLLDPERRSRPPRHPRRC
>CP029601.1|AZM61409.1|4313595_4314339_-|TetR-family-transcriptional-regulator
MHVQDSHWSSAVAAGGTLSAPAGSTRADGARTTPLRVDAQRNLEHVLRAAREVFGELGYGAPMEDVARRARVGVGTVYRRFPSKDVLVRRIAEEETSRLTEQARAALGQEDEPWSALSRFLRTSVASGAGRLLPPQVLRVGVAEERGAPDHARLPQQRTQTTGELRLVPGEQAGAADDAGAAQLLDVVGQLVERARAAGELRADVSVSDVLLVIATAAPSLPDAAQQAAASARLLDILLEGLRSRPS
>CP029601.1|AZM61410.1|4314713_4316093_+|FAD-dependent-oxidoreductase
MVKERARILVVGGGYVGMYTALRLQRKLKRELGRGEAEITVVTPDPYMTYQPFLPEAAAGAISPRHVVVPLRRVLDRCRIIIGEATGIDHAKRTATVATLATEEEGTGGEQIVYDELVLAPGSVSRTLPIPGLAEHAIGFKTVEEAIGLRNHVLEQMDIASSTRDPALRDAALTFVFVGGGYAGVEALGELEDMARYAARYYHNIRPEDMKWILVEASGRILPEVGEEMGRYTVTELRRRNIDVRLETRLESCADRVAVLSDGSRFPTRTVVWTAGVKPHPVLAAADLPLNGRGRLKCTAELTVDGAAHAWAAGDAAAVPDVTAREEGRECAPNAQHALRQARVLGDNIVHSLRGEPLETYAHKYAGSVASLGLHKGVAQVYGRKLKGYPAWFMHRTYHLSRVPTFNRKARVAAEWTLAGLFKREIVSLGSLEHPRAEFELAAGGKPSQDPPHNPKGSS
>CP029601.1|AZM61411.1|4316266_4317958_+|PAS-sensor-protein
MNFTRWSARLPGTQRRAAARAEQAVSPDRRGEGSVPAARAEQLTEDARPVPAVDELKVREVLDRVPSLVALVHGPDHRIAYVNDAYTAAFGMRPLGAPARGALPELDELGLLPLLDQVLRSGKPRTVKSRKAPDGRSYTFTCTPVAEGDARGVLVFATDVTDHAEAAERLRASERRQRETAVTLQRSLLPQELEEPDDLRIAATYHPGGTEAAVGGDWYDVITLGGGRTALVIGDVMGRGVRAAAVMGQLRTAVRAYARLDLPPHEVLQLLDGLAMEIDANQIATCTYAIHDPNEGRLVYASAGHLPLLVRDENGTVRRADEPTGPPLGTGGWMHASGSVPLGPGSTAVLYTDGLVERRNEDLDEGIAALERALAGATGSPQVVCDRLVRSAGVTPDHDDDVAVLVLQHPARKDAESELFRNAALELLGGVEAAPRARAFASGVLTSWRFPAELHDLGVLAASELVANSLQHGTPPMRLRLRRTDRRLIIEVTDGDDHLPRRRRAEPGDESGRGIAIVATIASSWGSRRTPGGGKAVWCEFLLPKPSKTQGAQPTRWAAGSGL
>CP029601.1|AZM61412.1|4318012_4319287_-|MFS-transporter
MGAAMRRIHVGNALSAFGLGFTVPYLYVYVAQVRGLGAMTAGLVLAVFAVAALVVLPFAGRAIVRRGPLPVLLAALVTAAIGAIALGLSSGAAAVLLSASALGAGQAVMQPALATMIVDCSTMETRSRAFAMQFFLQNLGLGVGGLIGGHLVDATKAGSFTLLFSLEAAIFLLLVVVMATVRMPHSPRIADAPQQSAKTGWKQLLGNRAMVQLCVLGFVLFFACYGQFESGLSAYGVEAAGISTSALGTALAANTLVIVVAQFAVLRFVERRKRSRVIASVGLIWAVAWAVAGYAGLGNGSQAMATAAFVSTYALFGLGEAMLSPTLAPLVADLAPTGMAGQYNSAFALVKQLALAVGPAVGGPLGASLHAPYIAVFLLFSLGITVLAVRLGRQLTEAQNHPSAVRSRVVAQGGAATGQAPAHA
>CP029601.1|AZM61413.1|4319409_4319958_+|MarR-family-transcriptional-regulator
MGDTTGLGEPTLEEQIAAYQREFQDLDPQVEKIVNALSRLNRRMNVAYGRQTAELGITNADWEVLKALVLSGAPYRMGPGDLAKRLGLTPAAMTHRIDRMVAEGLVTRERDETNRVRVIVELTPAGREKWQEVMRMATVFEADLLQDLDQEERAHLGEVLTRLLRRVEETQPDAGGRLTDLD
>CP029601.1|AZM61414.1|4325727_4326402_-|DNA-binding-response-regulator
MTTVLIADDQPLQRFGFRMLLESQDDMTVVGEASNGSEAIRMTAELHPDVVLMDIRMPGLDGIEATRRIVAAGDRTRVLILTTFDLDEYAHAGLRAGASGFLIKDAQPEELLSGVRSVASGDAVVAPSLTRRLLDAYAHRLPAPGGDTGDMPPADARLSALTEREREILTVIGKGWTNTEIAARLHLAESTVKTHVGRILAKTGSRDRIQAVILAYDTKLVEPS
>CP029601.1|AZM64673.1|4326398_4327760_-|two-component-sensor-histidine-kinase
MAATVVPGYHLPHPKYGPRPFSPTDAPATMDRVTNDREYPAGVRTTEPLIQYMQRLTQRAREFDRRHPLLWDLAFTGFWVTAALIDVTGGGWLTVTYAPDTPDVLLFVLSLGLSVPLLLRRTHPAAVLLAMFPFAVVNAWSGATLQVVLLQLAVLFHIVLRLPLRHLWWAPALMLVPVGVSAARYGEGAWSQQIGSHATSIGVAVLIGITVRTRQNYTEALEDRARRLEIERDQQARIATAAERARIAREMHDIIGHNLSVITGLADGGKYAATKSPERAAQALDAIGTTSRQALGELRRLLDVLREDDTALPAARTPQPGLTDLDQLIDGVRTAGLPVHTTVAGRPTLSPGRQLTVFRVVQEALTNTLKHAGPDTRADIALVHGDKGAVTVTVTDTGGGRPPSTPSTPSDGRGIPGMRERTALYGGTLEAGPRPHPEQGWRVHLHLPEETPQ
>CP029601.1|AZM61415.1|4327767_4328316_+|GNAT-family-N-acetyltransferase
MPIDDCVIRPVRAEEWAASRELRLVALRDPVAHIAYMDTYEEAVARPDSWWQERTANGAQQFIAETADGSWVANAAVLIEEAGSTDWTGSVVGRRQGHLVGVYVDPRYRGSGLSKALFHTALEWAWGQGAERVRLLVHADNVRALGSYRKAGFVETGVTMSLGDEPDDLELELAVERPVPDR
>CP029601.1|AZM61416.1|4328352_4329297_-|alpha/beta-hydrolase
MLHPADFPEPTLIPVNGVELEVFEAGRENAGNPIVLCHGWPEHAFSWRHQMPALAAAGYHVIAPNQRGYGNSSRPAEVTDYDIAHLSGDLLALLDHYGYEDATFVGHDWGAFVVWGLTLLHPNRVHKVINLALPYQERGAKPWIEAMEEMLGGDFYFVHFNRQPGVADAVFEENTHRFLRNLYRKNEPPREPRPGMALIELARAETPLGDPVMSDSELAVLVSAFESSGFTPGVNWYRNLDRNWRLLADVDPVIHQPTLMIYGDRDVIAKSGRLTDFVPNAEVVSLDCGHWIQQEKPEETNRAILAWLEQRAAA
>CP029601.1|AZM61417.1|4329414_4330362_+|WYL-domain-containing-protein
MRTDRLVAILLMLQRRERVTAAEVSRELEISERTARRDLDALAMAGVPVYSVQGRGGGWRLVGGARTDLSGLTAGEARALFLAVGPASAATPAVKAALRKLVHALPEPFRVQAEAAASSLVVDPQQWGASRVEHRPPRFLDALQDAVIRGVQVRLGYVDGQGVDTLRTVHPLGIVAKGPVWYLVSDTGTGRRTFRIDRVSSADPTDEPVRRPEDFDLAESWREIADEVDRRRTPLEAQAVCPPHGIGVLRRAFGSRLDVGGSTADGRIEVGIRGHSESMLAGELAGLVEWVEVTGPEGVRDHLASIGNALVERYG

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Crispr_ID: CP029601_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_13

4838116-4838203

Orphan

Consensus_repeat	Method
TGCCCGCTGATACGGCGGGCCTACGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029601_13

>merge|CP029601|13|4838116-4838203|CRISPRCasFinder
TACCCGCGGCTACCGCGCGACTGCCCGCGGCTGGGCACGACTGCGCGGGGACGGCGCGGCTGCCCGCGGCTATGGCGCGGCTGCGCGG

>CP029601|13|13|4838116-4838203|CRISPRCasFinder
TACCCGCGGCTACCGCGCGACTGCCCGC	GGCTGGGCACGACTGCGCGGGGACGGCGCGGC
TGCCCGCGGCTATGGCGCGGCTGCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM61846.1\|4848286_4849630_+\|formimidoylglutamate-deiminase	unknown	unknown	gnl\|CDD\|236420
CP029601.1\|AZM61843.1\|4843632_4845054_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143505
CP029601.1\|AZM61842.1\|4842891_4843476_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM61836.1\|4835599_4836391_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM61845.1\|4846961_4848290_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|236456
CP029601.1\|AZM61839.1\|4839533_4840922_+\|cystathionine-beta-synthase	unknown	unknown	gnl\|CDD\|273464
CP029601.1\|AZM61847.1\|4849650_4850835_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|237604
CP029601.1\|AZM61831.1\|4831150_4831921_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224059
CP029601.1\|AZM61841.1\|4841930_4842773_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP029601.1\|AZM61844.1\|4845198_4846875_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
CP029601.1\|AZM61832.1\|4832514_4833690_+\|4-hydroxybenzoate-3-monooxygenase	unknown	unknown	gnl\|CDD\|236198
CP029601.1\|AZM61837.1\|4836699_4837920_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181146
CP029601.1\|AZM61833.1\|4833899_4834793_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378959
CP029601.1\|AZM61830.1\|4828555_4831084_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|226957
CP029601.1\|AZM64711.1\|4827169_4828468_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
CP029601.1\|AZM61838.1\|4838316_4839372_-\|GDSL-family-lipase	unknown	unknown	gnl\|CDD\|238874
CP029601.1\|AZM61835.1\|4835209_4835521_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM61834.1\|4834877_4835108_-\|DUF4287-domain-containing-protein	unknown	unknown	gnl\|CDD\|379478
CP029601.1\|AZM61829.1\|4825403_4826795_+\|NADH-dehydrogenase-FAD-containing-subunit	unknown	unknown	gnl\|CDD\|224172
CP029601.1\|AZM61840.1\|4841288_4841756_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM61846.1\|4848286_4849630_+\|formimidoylglutamate-deiminase	gnl\|CDD\|236420	PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated.	0
CP029601.1\|AZM61843.1\|4843632_4845054_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143505	cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.	0
CP029601.1\|AZM61845.1\|4846961_4848290_+\|allantoate-amidohydrolase	gnl\|CDD\|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	9.76716e-179
CP029601.1\|AZM61839.1\|4839533_4840922_+\|cystathionine-beta-synthase	gnl\|CDD\|273464	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. [Amino acid biosynthesis, Serine family].	0
CP029601.1\|AZM61831.1\|4831150_4831921_-\|ABC-transporter	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.38811e-107
CP029601.1\|AZM61841.1\|4841930_4842773_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.26588e-31
CP029601.1\|AZM61844.1\|4845198_4846875_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
CP029601.1\|AZM61832.1\|4832514_4833690_+\|4-hydroxybenzoate-3-monooxygenase	gnl\|CDD\|236198	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.	0
CP029601.1\|AZM61837.1\|4836699_4837920_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181146	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase.	0
CP029601.1\|AZM61833.1\|4833899_4834793_+\|hypothetical-protein	gnl\|CDD\|378959	pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1 region of the receptor molecules is conserved from bacteria to humans.	1.47372e-85
CP029601.1\|AZM61830.1\|4828555_4831084_-\|ABC-transporter	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.40293e-26
CP029601.1\|AZM64711.1\|4827169_4828468_+\|SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	4.61557e-115
CP029601.1\|AZM61838.1\|4838316_4839372_-\|GDSL-family-lipase	gnl\|CDD\|238874	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.08477e-52
CP029601.1\|AZM61847.1\|4849650_4850835_+\|imidazolonepropionase	gnl\|CDD\|237604	PRK14085, PRK14085, imidazolonepropionase; Provisional.	0
CP029601.1\|AZM61834.1\|4834877_4835108_-\|DUF4287-domain-containing-protein	gnl\|CDD\|379478	pfam14117, DUF4287, Domain of unknown function (DUF4287). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 70 and 180 amino acids in length.	2.24291e-24
CP029601.1\|AZM61829.1\|4825403_4826795_+\|NADH-dehydrogenase-FAD-containing-subunit	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.58852e-104

>CP029601.1|AZM61837.1|4836699_4837920_-|acetyl-CoA-C-acetyltransferase
MPEAVIVSAARSPIGRAFKGSLKDVRPDDLTASIIQAALAKVPELDPRDIDDLMLGCGLPGGEQGNNLGRIVAVQMGMDHLPGCTITRYCSSSLQTSRMALHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTHNPLFAEAEARTAAVAESEGSTWHDPREDGLVPDPYIAMGQTAENLARLKGITRQEMDEFGVRSQNLAEEAIKNGFWEREITPVTTPDGTVISKDDGPRPGVTMEGVAGLKPVFRPDGLVTAGNCCPLNDGAAALVIMSDTKARELGLTPLARIVSTGVSGLSPEIMGLGPVEASKQALSRAGLTVDDIDLVEINEAFAAQVIPSYRELGIPLEKLNVNGGAIAVGHPFGMTGARITGTLINSLQWHDKQFGLETMCVGGGQGMAMVVERLS
>CP029601.1|AZM61836.1|4835599_4836391_-|hypothetical-protein
MSAMPIALLITTAATGAVGVAVLRSILVLRRQVAALHTELAGRQAAATRARVPSARAADTDEIRAAVAEALAEERERELAEARAFWAAQEARDSADAPTLLGLADSELFLPRQADFAGLEPVSEPGAAGTDTPEEHAGDSPELAAARRRHPSHPDFVPHPSPVVNDHERTVSVLEELAAERTELSDVRPGPLGTLDVYVFADGTTLCMTPGHRETAERLAGALRAGETPFLLGGSGVSGAYTLTFSCGEESVYILADRVIASL
>CP029601.1|AZM61835.1|4835209_4835521_+|hypothetical-protein
MVDTTPFTRAVDHFADRLRAAPQSRLQRGGAAEALALARELARRTQLVEEPGSAPREMPDAGMFAAADQITVAGHDLALVLKNDQEVEEAVRLVEEARERAGV
>CP029601.1|AZM61834.1|4834877_4835108_-|DUF4287-domain-containing-protein
MSQVFSEETHRNLLARIPHCTGREISDWLRTVEEGPSLFRFEEKVSWLRHEYDLAYGHAKAIVHEYDLRRAARKLL
>CP029601.1|AZM61833.1|4833899_4834793_+|hypothetical-protein
MRSRNPVFSRRGFSRDNGYAGFNTAPQAGGPAVATQANPYAQPTGNPYAQNPYAQQDLQYGAPPQAPVTTGRMTLDDVIVRTAGTLGLLIVTAALSWALLPVDDANISRSYGIGIGAALIGMVLALVQSFKRKPTPALILTYAAFEGVFLGVISSIVDNRIADGAAMQAVLGTMAVFAGVLVAYKAGWIRVNRRFYGFVMAAALGFILLMAVNLLFAVFGGGDGLGFRSGPLGIVFGIVGIILGACFLALDFKQVEDGIAYGAPREEAWFAAFGLTLTLVWIYMEFLRLIAIFNSSD
>CP029601.1|AZM61832.1|4832514_4833690_+|4-hydroxybenzoate-3-monooxygenase
MRTCVGIIGAGPAGLVLARLLHRAGIEAVVLEARDRTYVEQRQRAGVLEQGTVDVLRAAGAGARMDREGLRHDGIELRFERRRHRVDFPGLTGGRSVTVYAQTEVCKDLIALQLAGGGPLLFEAEALAVEGVDTPSPRIRFRNQGREDVLECDYVAGCDGFWGVSRSAVPAGVGRVFERTYPFGWLGILADVPPSHDELVYARHERGFALLSMRTPAVSRLYLQVPDGTKAQEWGEEEIWRELELRLETADGWRLRRGPVTQKSVTPMRSYVHEPMRYGRLFLAGDAAHIVPPTGAKGLNLAVGDAVVLARALAHEKETGSAELLDTYSATCLRRVWQAERFSYDMTTLLHRAPGATAFEDRLQLARLDRLTSSRAAETDLAEAYTGFPLS
>CP029601.1|AZM61831.1|4831150_4831921_-|ABC-transporter
MTTAPIADRATAVAARATELSKIYGQGETQVVALDRVSVGFHQAEFTAIMGPSGSGKSTLMHCVAGLDTFSSGSVRIGETELGSLKDKQLTRLRRDKIGFIFQAFNLLPTLSALENITLPMDIAGRKPDKEWLDTVIRMIGLADRLGHRPAQLSGGQQQRVAVARALASRPDIIFGDEPTGNLDSRSGAEVLGFLRNSVRELGQTVVMVTHDPVAAAYADRVVFLADGRIVDEMHGPTADSVLDRMKRFDAKGRTS
>CP029601.1|AZM61830.1|4828555_4831084_-|ABC-transporter
MFRTALRNVLAHKARLLMTVLAVMLGVAFVSGTLVFTNSLSQALQKQSAKGFDHVDVAVTGEWKEGEGDEEGEYEKLTRELVDTSAAVPGAAQAIGTVKGFTALADKDGKLIGNGFQSEGGNYWGTDDPRFPLVSGRAPKGEGEILIDSETAKRTGYEVGDTVRMSVDGPVLEPKITGIFTTDDGNVAAGGSLTLFDTPTAQKLLAEPDTFDEIAVKAKDGVSDTELRTQLEDALSSYAVETVTGTKLADDQAEAIASSMSGLKQGLLVFAGIALFVGTFIIANTFTMLVAQRTKELALMRAVGASRRQITRSVLIEAFVVGTVAALIGLATGVGIGAGLRSLMGTLDAPMPEGPLVITAGTVGSAFAVGILVTMLAAWLPGRRAAKIPPVAAMSALHAQPTTKSLVLRNTLGSLVSAAGVAVVLVATTMDGTDGQAPMGLGAVLLIIGVFILTPLLSRPLIAAAAPVLRVFGVSGKLARQNSVRNPRRTAATASALMIGLTLITGMTVMAGSLQTSIDKMAASAIEADYMVSMANGHNLSPDVEKELRQSDDVTAVSPLRNTYVRIDGQHENITGVNGAAIAKLTEFPVVAGAFEVGGDRVVVDEDDAKSYGLKVGSEFTLTFGDDEQQKVTVAGVYEANEMMRGIMVDTSVVDPHLSEPADMMVMVKTADGASDAAKDTLEKALGDNPAIKVQDKQDLSNEIARMFTLILNMVYGLLAMAVIVAVLGVINTLAMSVFERSQEIGMLRAIGLDRKGIKRMVRLESLVISLFGAVLGLGLGVFFGWAAGELVGSSMETYELVLPWARMGVFLALAAVVGVLAALWPARRAARMNMLQAIKAE
>CP029601.1|AZM64711.1|4827169_4828468_+|SAM-dependent-methyltransferase
MADAALRLKGILEQLIGAPLPVRIRTWDGSQAGPPDAPTLVVRNRRALRHLLWKPGELGLARAWVAGDLTIEGDLYTALDHLAGLIWERDEDARPLTQALRDPSFRSAVRRLIALAGHPLPPAPPPEEARRPRRGLHTKHTDRRAISHHYDVGNDFYEIVLGPSMVYSCAYWSAPPPQGTLEQAQHDKLELVCRKLALEPGQRLLDVGCGWGSMAIHAAREHGVNVVGITLSQEQAAYARKRIADEGLTDRVEIRVQDYRDVADGPYDAIASIGMAEHVGSERYLEYATVLHRLLRPGGRLLNHQIARRPQRDESAYQVDDFIDAYVFPDGELSPLGTTVSLLERSGFEVRDVESLREHYALTLRRWVANLEADWARAVALTSPGRARVWQLYMAASALAFERNRIGVNQVLAVRTPESGAAGLPLRARTWN
>CP029601.1|AZM61829.1|4825403_4826795_+|NADH-dehydrogenase-FAD-containing-subunit
MSTTERPRILVVGGGYVGLYAARRIQKKMRYGEATVTVVDPRSYMTYQPFLPEAAAGSISPRHVVVPLRRVLPKAEVLTGRVTTIDQDRKVATVAPLVGEAYELPFDYLIIAMGAVSRTFPIPGLAEQGIGMKGIEEAIGLRNHVLEQLDKADSTTDEEIRRKALTFVFVGGGFAGAETIGEVEDMARDAAKYYTNVSREDMRFVLVDAADKILPEVGPKLGTYGKEHLESRGVEVYLSTSMDSCVDGHVVLKNGLEVDSNTIVWTAGVKPNPALARFGLPLGPRGHVDTEPTLQVKGTDYIWAAGDNAQVPDLVGRKAGNENAWCPPNAQHALRQAKVLGDNVISGMRGFPQKEYSHANKGAVAGLGLHKGVAMIVVGKMKIKLKGRLAWYMHRAYHGMAMPTFNRKIRVFADWTLGMFLKREVVSLGAIESPREEFYEAAKPAPAPAAAKQEPKKTEAKAS
>CP029601.1|AZM61838.1|4838316_4839372_-|GDSL-family-lipase
MTGMSRARVARRIAAGAAYGGGGIGLAGAATVGLLLAEAQLARRRVNNGTSPRVPNADGLYGAAYTVPGEPALRLTMLGDSTAAGQGVHRAGQTPGALLASGVAAIAERPVGLSTVAVPGARSDDLDRQVTQALADPSRVPDICVIMIGANDVTHRMPPTQSVRHLASAVRRLRTAGAEVVVGTCPDLGTIEPVQQPLRWLARRASRQLAAAQTIGAVEQGGRTVSLGDLLGPEFAANPRELFGPDSYHPSAEGYATAAMAVLPTVCAALGLWPAEEERPDAARREGFLPVARAAAEAASEAGTEVTAAMPTGPRGPWALLKRRRRRRVPEAPSPRAVVSYGGPNTRDDTA
>CP029601.1|AZM61839.1|4839533_4840922_+|cystathionine-beta-synthase
MQFHDSMISLVGNTPLVRLNSVTKGIRATVLAKVEYFNPGGSVKDRIALRMIEAAEKSGELQPGGTIVEPTSGNTGVGLAIVAQQKGYKCIFVCPDKVSTDKINVLRAYGAEVVVCPTAVAPEHPDSYYNVSDRLVRETPGAWKPDQYSNPNNPLSHYHSTGPELWEQTDGKITHFVAGVGTGGTISGTGRYLKEISDGAVQVIGADPEGSVYSGGSGRPYLVEGVGEDFWPTAYDRDVADEIVAVSDKDSFQMTRRLAKEEGLLVGGSCGMAVVAALEVASRLGEDDVVVVLLPDSGRGYLSKIFNDEWMADYGFLEDTGPSARVGDVLDDKEGGHIPSLVHMHPDETIGQAIEVLREYGVSQMPVVKPGAGHPDVMAAEVVGSVVERELLDALFSKSASLEDPLEKHMSPPLPQVGSGEPVADLMAVLGKADAAIVLVEGKPTGVVSRQDLLSFLARNEK
>CP029601.1|AZM61840.1|4841288_4841756_-|hypothetical-protein
MPPGPCLPTVDSMTGMDARDAELKKELNAALQARRELGEEYESALVDSFLEKVDQRIDGAVERRVRRQLAEHRMTVARDSRSPKVTDSWGERFGFGIVSLVLAVPLSAIGGGVADLPGLLVAWAGIVGVNVVQAVRTNPGLFGRRRDGRDDDWED
>CP029601.1|AZM61841.1|4841930_4842773_+|MurR/RpiR-family-transcriptional-regulator
MSGTESPAARLQALFEGHRLTPTQRRIAHSMVRRAADVPFLSSVELAELAGVSQPSVTRFAVALGFDGYPALRRHLREVAPAGPAPGTGSYNAYQQAVEAEIENLRHLADALADTGPVQRAGRVLAGSRPLPVLGLRAAAAQAHGFAYFAAKVHPDVRLLNEGGTMLHDRIDAAARAGASALLCFALPRHPREVVDALAHARETGLTVVTVADSAFAPVAKVSDLLLPAAVGTGLAFDTACAPMLLGRVLLEAMCDDLPDAQARLEEFDAKAAARGLFVD
>CP029601.1|AZM61842.1|4842891_4843476_+|hypothetical-protein
MTRGGQGLARVAVVVRAGAAPLWWLGIFAAGIGVLVPGLTGRRIGVLTGAALFLVAAAVVAYGRRGRYRALAGTAARAGRHDVLQDRAVSVRNWRRAHRWWLLLAFLAALGTAFAVPAAGGLLLAGCGLGLWLKAAWIGRREQADDVLLWVRVDWLRAGAGRPAGKAVKAYRTTGIAAGDAAPGGSRRRSAALV
>CP029601.1|AZM61843.1|4843632_4845054_-|diaminopimelate-decarboxylase
MCADTDNPGRTGNTVAYGNGPTDEVDPRGAGRAARRDEAVRAAVEQGLLDGDTPLVALLDVTGIRESAAGLRAAFDAVTAPGTPVLHAFAVKASPLVPVLRLLREEGIGAEVASPGELALARAAGVAPERTVLDSPAKTLAELREAMALGIAVNADNPQELERIDALRAASGSRSPIGIRVNPQVGGGSIEALSTATATSKFGVALRDEGAREWVVRACLDRPWLTRLHAHSGSQGIALSMMARGIAETYDLAEEINRRAGRQQIDTVDIGGGLPVNFASEETSPTYGEYARLLRETVPGLFDGRYGLVTEFGRSLLAKHGTVVARVEYAKSAGGRPVAVTHAGVQVATRTVYAPQSWPLRIAAYDAKGRPKEGPAVVQDVAGPACFAGDLLAQGQELPLLEQGDYAAALDTGAYYFAHHYAYNSLPRPAVHGFAPDGKGGVAFATVRRAQTVEEIVTESGAAHTDSLITPTP
>CP029601.1|AZM61844.1|4845198_4846875_+|urocanate-hydratase
MAGPGPGPRPVRAPRGTEPSALGWQQEAALRMLQNNLDPEVAEHPDKLVVYGGTGKAARDWRSFDAMVRTLRTLKQDETMLVQSGRPVGVMQTHEWAPRVLLANSNLVGDWANWEEFRRLEALGLTMYGQMTAGSWIYIGTQGILQGTYETFAAVAAKRFGGTLAGTITLTAGLGGMGGAQPLAVTMNDGVALCVDCDPRAIDRRIEHRYLDVKADSLDHALQLAVEARDRRTPLSIGVLGNAAEVVPQLLSMSAPIDIVTDQTSAHDPLAYLPLGIAFEDMADAAAKDPAGFTARARASMARHVEAMVGFQDAGAEVFDYGNSLRGEAQLAGYERAFAFPGFVPAYIRPLFCEGKGPFRWAALSGDPADIARTDRAILDLFPENESLARWIRMAGERVHFQGLPARICWLGYGERDKAGERFNDMVASGELAAPVVIGRDHLDCGSVASPYRETEAMLDGSDAIADWPLLNAMVNVASGASWVSLHHGGGVGMGRSIHAGQVTVADGTAMAGEKIRRVLTNDPGMGVIRHVDAGYDIAESVADARGVRVPMREGDPA
>CP029601.1|AZM61845.1|4846961_4848290_+|allantoate-amidohydrolase
MGGTPIALRNDCPQPEPGRSDCPQPGPGRGDCSQSGGSSFHEMWEQLRPIGRHRGSGGYRRFAWGEADVECRAWFEAQARGRGLDYEVDRNGNQWAWLGDPARGDAVVTGSHLDSVPDGGAFDGPLGVVSAFAALDELRRRDVRLARPLGIVNFGDEEGARFGLACVGSRLTAGALTLEQAHRLTDADGITLPQAMERAGHDPGTLGADPERLDRIGAFVELHVEQGRALDLSGDPVGVASAIWPHGRWRFDFRGEANHAGTTRLPDRRDPMPAYAETVLAARREAERAGAVATFGKIAVEPNGVNAIPSLVRGWLDSRAADQERLDAVVGGVRKAARAHAAAHGVDVDVERESFTPVVEFDHALRDTLARILGSDDDLKVPVLGTGAGHDAGILAGRIPTAMLFVRNPTGVSHSPAEFATEDDCVAGVLALADVLEGLART
>CP029601.1|AZM61846.1|4848286_4849630_+|formimidoylglutamate-deiminase
MTATQRTYWLEHAWLGTHVEPGVTLTVQDGRISAVRPDTPAPPPGAEILRGLTLPGLANAHSHAFHRALRSTVQVGSGTFWTWREIMYATAERLTPDTCHALARAVYAEMALAGVTTVGEFHYVHHAPGGTPYADPNAMGEALVAAAAEAGIRITLLDTAYLSSGFGRPPTAHQLRFSDGDADTWAERCSLLKERDHARIGAAIHSVRAVPARQLATVARWAEERRAPLHVHLSEQTAENDACREAHGCTPTQLLALHGVLGPRTTGIHNTHLTAEDVSLIGGSGTGTCMCPTTERDLADGIGPAAALQNEGSPLSLGSDSHAVIDLFEEARAMELNQRLRTRTRGHWTAAALLRAASADGHAALGWDGIGTIEAGARADLVTIALDSVRTAGPLPRLGAETAVFAATAADVRHTVVSGRHVVRDGEHTLVPDVPGALAQAVEALRA
>CP029601.1|AZM61847.1|4849650_4850835_+|imidazolonepropionase
MSSTVISNIATLVTNDPSLGDASPLGPVHDAAVVIEGDRIVWTGASSKAPATDNRVDAEGGAVLPGFVDSHSHLVFAGDRTEEFNARMSGRPYSAGGIRTTVAATRAATDAQLEANLTRLLTEALRQGTTTFETKSGYGLTTEDEARALRLAARHTDEVTFLGAHIVAPEYADDPAGYVALVTGEMLDACAPHARWIDVFCEKGAFDGDQARAILTAGRAKGLHPRVHANQLSYGPGVQLAVELDAASADHCTHLTDADVDALAHSRTVATLLPGAEFSTRAAWPDARRLLDAGVTVALSTDCNPGSSFTSSVPFCIALAVRDMGMTPDEAVWSATAGGARALRRDDIGRVAPGAYADLLLLDAPSHVQLAYRPGVPLVRTVWQKGRKIEQRWV

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Crispr_ID: CP029601_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029601_15

6416969-6417072

Orphan

Consensus_repeat	Method
ACCGGGGTGAAGTCCCGCGCCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029601_15

>merge|CP029601|15|6416969-6417072|CRISPRCasFinder
ACCGGGGTGAAGTCCCGCGCCCCGATGCTGTGTCTGTCCGGGGGGCAACCCCCGGGCCCCCGGCCGGGGCGGGTTCAGCGGACCGGGGTGAAGTCCCGAGCCCC

>CP029601|15|15|6416969-6417072|CRISPRCasFinder
ACCGGGGTGAAGTCCCGCGCCCC	GATGCTGTGTCTGT
CCGGGGGGCAACCCCCGGGCCCC	CGGCCGGGGCGGGTTCAGCGG
ACCGGGGTGAAGTCCCGAGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029601.1\|AZM62997.1\|6419729_6420236_-\|diaminobutyrate-acetyltransferase	unknown	unknown	gnl\|CDD\|131459
CP029601.1\|AZM64824.1\|6409411_6410941_+\|aldehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|143447
CP029601.1\|AZM63003.1\|6428413_6429505_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238624
CP029601.1\|AZM62998.1\|6420591_6421692_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|223153
CP029601.1\|AZM63000.1\|6422718_6423564_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP029601.1\|AZM62992.1\|6414305_6414914_+\|DUF1349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377771
CP029601.1\|AZM63002.1\|6425336_6428351_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276938
CP029601.1\|AZM64825.1\|6413688_6414234_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM62990.1\|6410947_6411610_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029601.1\|AZM62995.1\|6417945_6418344_-\|L-ectoine-synthase	unknown	unknown	gnl\|CDD\|183953
CP029601.1\|AZM62999.1\|6421873_6422719_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270248
CP029601.1\|AZM62996.1\|6418380_6419652_-\|diaminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236437
CP029601.1\|AZM62987.1\|6407158_6407812_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377837
CP029601.1\|AZM62988.1\|6408019_6408493_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP029601.1\|AZM62989.1\|6408496_6409270_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP029601.1\|AZM63001.1\|6424451_6425117_-\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM62994.1\|6415793_6416882_+\|aminotransferase	unknown	unknown	gnl\|CDD\|223594
CP029601.1\|AZM63004.1\|6429671_6430625_+\|hypothetical-protein	unknown	unknown	unknown
CP029601.1\|AZM62993.1\|6414997_6415714_+\|protein-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239322
CP029601.1\|AZM62991.1\|6411696_6413418_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951

Protein	Function_ID	Function_description	E-value
CP029601.1\|AZM62997.1\|6419729_6420236_-\|diaminobutyrate-acetyltransferase	gnl\|CDD\|131459	TIGR02406, L-24-diaminobutyric_acid_acetyltransferase, diaminobutyrate acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase. [Cellular processes, Adaptations to atypical conditions].	2.16456e-72
CP029601.1\|AZM64824.1\|6409411_6410941_+\|aldehyde-dehydrogenase-(NADP(+))	gnl\|CDD\|143447	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.	0
CP029601.1\|AZM63003.1\|6428413_6429505_+\|amidohydrolase	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.64583e-67
CP029601.1\|AZM62998.1\|6420591_6421692_-\|aspartate-aminotransferase	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	1.07908e-76
CP029601.1\|AZM63000.1\|6422718_6423564_+\|ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.80357e-59
CP029601.1\|AZM62992.1\|6414305_6414914_+\|DUF1349-domain-containing-protein	gnl\|CDD\|377771	pfam07081, DUF1349, Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.	7.92712e-60
CP029601.1\|AZM63002.1\|6425336_6428351_-\|hypothetical-protein	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	2.30844e-44
CP029601.1\|AZM62994.1\|6415793_6416882_+\|aminotransferase	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	5.60504e-45
CP029601.1\|AZM62996.1\|6418380_6419652_-\|diaminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236437	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase.	0
CP029601.1\|AZM62999.1\|6421873_6422719_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	1.48499e-66
CP029601.1\|AZM62987.1\|6407158_6407812_-\|hypothetical-protein	gnl\|CDD\|377837	pfam07452, CHRD, CHRD domain. CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologs. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made. Its most conserved feature is a GE[I/L]RCG[V/I/L] motif towards its C-terminal end Most bacterial proteins in this family have only one CHRD domain, whereas it is found repeated in many eukaryotic proteins such as human chordin and Drosophila SOG..	2.29452e-21
CP029601.1\|AZM62988.1\|6408019_6408493_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	5.21106e-24
CP029601.1\|AZM62989.1\|6408496_6409270_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.52573e-63
CP029601.1\|AZM62995.1\|6417945_6418344_-\|L-ectoine-synthase	gnl\|CDD\|183953	PRK13290, ectC, L-ectoine synthase; Reviewed.	5.19359e-79
CP029601.1\|AZM62990.1\|6410947_6411610_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.67725e-66
CP029601.1\|AZM62993.1\|6414997_6415714_+\|protein-disulfide-isomerase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	3.9955e-82
CP029601.1\|AZM62991.1\|6411696_6413418_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.37742e-35

>CP029601.1|AZM62994.1|6415793_6416882_+|aminotransferase
MDGEVAGPQSGSMETFESLVRTEFTPKHTYLNTASNALLPARTVAALQDAARLRAEGASLNPLFADVEACRAAYARLAGVPVERVAVGATVALYTSLVAASLPAGAEVLTAEGDFSSVLNPFHTRGDLKVRAVPLERLADSVRPGTALAAVSAVQSADGRIADLAALREAARAHGARTYVDFSQAAGWLPVTADLCDYSVTIAYKWLLGTHGAAFLVVPEDFGDLTPVQAGWASGENPWDSCYGPVTELAHSARRFDTSHALLDYAALRASLGLVEELGVDAVRAHDLALADRFRDGLAALGHRPVPAPGSPIVSVPGLGRLQPELAEAGIQVSDRAGNLRASFHLYNTADDVDRLLDALRG
>CP029601.1|AZM62993.1|6414997_6415714_+|protein-disulfide-isomerase
MRVEIWSDIACPWCYVGKARFEKALASFPHRDQVEVVHRSFELDPGRAKDDVQLVVPMLAEKYGMSEAQAEAAQDNLIAQATAEGLPFATRGRDSGNTFDMHRLLHFAREQGRQTELLDVLYRANFGEERSVFNDDERLVELATEAGLDQDAVRRLLDDPQAYADEVRADEREAAELGARGVPFFVLDRKYGVSGAQPAEVFAQALNQAWGDRPPLRMAGADADAEACGPDGCAVPQK
>CP029601.1|AZM62992.1|6414305_6414914_+|DUF1349-domain-containing-protein
MDLDIPELPFPLRTHGPDGSWSYEDGVLTGWAGPRQDRFVPPTGESLDPAADAPRLLGAPEGDFQLIARVTVGFAATFDAGVLYVHVGERAWAKLCLEYSPDVPTLCTVVTRGHSDDANSFTVDGSSIWLRVSRTGRAFAFHASRDGERWTFVRLFTLDDEKETGAALVGFMTQSPMGEGCVVTFDHIEYRPHWPHDLRDGS
>CP029601.1|AZM64825.1|6413688_6414234_+|hypothetical-protein
MTLMVNRYVVTETLPDGSDGRVLAFAEQKRMTLKERMEFYTDESRKQLLCTATARQVVDLGAVYDVRDDQERLLGTYRKKFGASLLRSTWELEQPGSVDAVGRERNRFVAVVRRVWDFLPFDLVPFVWPYHFDFTSDGGPVMKVDKKIGLRDRYVVDVASPALDLRLAIAQAVALDALQSR
>CP029601.1|AZM62991.1|6411696_6413418_-|two-component-sensor-histidine-kinase
MDVSETPRTGLPLRSRLAAASPWPRKRIVGEAVLALALSGTAALLHATSGGSVVAGVALVLGTAVLSLARRALPATVLLISSALAGSIVGMFALLICASWSAGSRIKRPARAVAAYTAGLALYFTLTVLTADEEELGLSLLLTAVLSVTPFLVLAVVPGLASRYRAQRHALLDALQRHNAQLVREQAMVARQARLLERQRIAQDMHDSLGHQLALITVHAGALEVDPDLSDRQREGVGILREASRTAMRELREAVGILRDDAGAPEPDREDTEPSAARVAASVDRLVEASRAAGAKVELLRSGTERPLAPAADHAVYRIAQEGLTNAHKHAPGAPITVALRYEPDSLVVEVANGPVPAGAPAGPPAISGGQGLAGLEERARLVGGMVHRGPTPDGGFRLAGVLPYGSGETVARPGAATSVAAGEDFRRQSGEGLAGHGGGVIEHRSDPQKEFAAIMSSKKNVALGCALTAVVLVVGVGALLVWGVSKLLDEVEKGVIPASVYESAEVGDAEADLRKKFPEGGSLLTDGVEKDGPPLPENADCEHFVDDEEDIVYRFCFRDGKLSSKESYPHKI
>CP029601.1|AZM62990.1|6410947_6411610_-|DNA-binding-response-regulator
MIRVLVADDEPLIRAGIRMILTSAEDIEVVAEARNGREAVETVRGTAVDVALLDIQMPVLDGLTALAEMGRAAPGVRVLILTTFGERDNVLRALGHGSAGFLLKDSAPQELIHAVRAAAAGNAYLSPAATRHVVDTLASPAATVRAEEARRRLAGLTAREREVLALLGEGLSNADAGARLHMSEATVKTYVSRILTKLDCENRVQAALLARDAGLEPSAG
>CP029601.1|AZM64824.1|6409411_6410941_+|aldehyde-dehydrogenase-(NADP(+))
MAAAPVWSVDPRTGKQREQVAVEATAQEVDAAVRAAHDARGALTDRTVRAAFLRTAADELEAARDQLVEAADAETALGPARLTGELARTCYQLRAFAGIVDEGAFLDVVINHPDDTATPPIPDLRRYKIPLGVVAVYSASNFPFAFSVAGGDTASALAAGCPVVVKAHPDHPALSELVAKVLRRAAARHGIPDGVLGLVHGFDAGLELIRHPLVAAAGFTGSVRGGRALFDAAAARPVPIPFHGELGSLNPVVVTEAAAAERGEAIGAGLAGSMTLGVGQFCVKPGLVLAPAGPAGDALLKSLTDAVSDTDAGVLLDHRMRDNFVAGVAERAQLPDVDSPVTPGAGGEHTVSAGFLTVPASRLAREGEHDLLLEECFGPVTVVARYADDGEVREVLSRLPGNLTATVQLSAEEAAGQGRGAELVRELTPLAGRVLVNGWPTGVAVAPAQHHGGPYPATTSTSTSVGGTAIERWLRPVVYQGTPEALLPEELRDDNPLGLPRRFNGRLER
>CP029601.1|AZM62989.1|6408496_6409270_-|IclR-family-transcriptional-regulator
MSAGETGGGAQVKSAVRTVELLEYFAGRPGMHSLAAVQEAVGYPKSSLYMLLRTLVELGWVETDATGTRYGIGVRALLVGTSYIDGDEVVAAARPTLDRLSDDTTETIHLARLDGTNVVYLATRQSQHYLRPFTRVGRRLPAHSTSLGKALLSTYSDEQVRKMLPETLPALTEHTITDREKLIEELHLVREQGFAVDREENTLGLRCFGVAIPYRTPARDAISCSVPVARLTPAHEQMVKDALFDARDRLTLATRRL
>CP029601.1|AZM62988.1|6408019_6408493_-|GNAT-family-N-acetyltransferase
MDIALRPVHDSDLPVFYRQLNDPEALRMAAFTPEDPADQDRFDAHWAHIRSSPQIVVRTVLADGDVAGHVSVYGEPGEREVTYWVDRAHWGKGIATTALRALLTEVTERPLYARVAADNTGSRRVLEHCGFEVSAHASGYAPARGAEIAELVLTLDT
>CP029601.1|AZM62987.1|6407158_6407812_-|hypothetical-protein
MLNKRLALIAASAVTSALLLTACQGEDTASDNVGGSGGSGTHSPDGSGHEGGGAGAGGAGEWAGNKKDAAFFGSVLNGANEVPVEGKAVGDKDGQGLALMRIQGDQVSYAFTFTGTETPTLGHLHQGAKGVNGDVKIPFFTERLADGSTFAHGTVTVKDHDLLEGIKTNPQNWYFNLHTDEFPGGAVRGQAYKLPSGVQIPDHITADTLDSVVGSVQ
>CP029601.1|AZM62995.1|6417945_6418344_-|L-ectoine-synthase
MIVRSFKEIEGTDRHVKSASGTWESKRIVLAKEKVGFSLHETILYAGTETSMWYANHIEAVVCTKGEAELTDRETGKTYTITPGTMYLLDGHERHTLKVKEDFHCICVFNPPVTGREDHDENGVYPLLTEEV
>CP029601.1|AZM62996.1|6418380_6419652_-|diaminobutyrate--2-oxoglutarate-transaminase
MTITQPDLSVFETLESEVRSYCRGWPAVFDRAHGSRMYDEDGHEYLDFFAGAGSLNYGHNNPVLKRALIDYLERDGVTHGLDMSTTAKRAFLESFQNWILRPRDLPYKVMFPGPTGTNAVEAALKLARKVKGREAIVSFTNAFHGMSLGSLAVTGNAFKRAGAGIPLVHGTPMPFDNYFDGQVPDFLWFERLLEDQGSGLNKPAAVIVETVQGEGGINVARPEWLRALAELCERQDMLLIVDDIQMGCGRTGAFFSFEEAGITPDIVTVSKSISGYGLPMALTLFKPELDLWEPGEHNGTFRGNNPAFVTATATLEAYWADGSAMEKQTRSRGEQVEQAMAAIAEENPAAVKEYRGRGLVWGMEFHDKERAGRIARRAFELGLLIETSGPESEVVKLLPALTITPDELDEGLRTLARAVRETA
>CP029601.1|AZM62997.1|6419729_6420236_-|diaminobutyrate-acetyltransferase
MTAAQADLQIDRPTVADGAVLWRIARDSKVLDLNSSYSYLLWCRDFAATSAVVRDEHGEPIGFVSGYLRPDSPRTLLVWQVAVDASYRGRGLAAALLDGLAARTAAEHGVDTVETTITPGNTASERLFTAFAERHGALLEREVLFDAGQFPDGPHDPEVLYRIGPFAL
>CP029601.1|AZM62998.1|6420591_6421692_-|aspartate-aminotransferase
MTHLLLGLPPLSAARFASIEDRVARLLGTGQDVVVMQGEALLPLEGAIRAAAGPGTTALNVITGPYGQTFGDWLRDCGATVIDLAVPFHTAVTAGQVRAAFAEHPEIDFVSLVHAEAATGNTNPVAAVGEVVREHGALFYLDAVASIGAEPVLPDAWGVDLCVIGAQKAMGGPAGVSAVSVSERAWARMAANPRAPRRSYLSLLDWKERWIDGGRKALPHAPAQLEMLALEACVERIEAVGPDVVMARHASAAAATRAGASALGGGLEPYVHDAAEAAPVATTLRAPAGTVAAELVARALAADPAVPLAAGGGALAKEMIRVNHYGPGATLDVVRSSLTALAAALGESGVGVDTEGALRAADAAWG
>CP029601.1|AZM62999.1|6421873_6422719_+|ABC-transporter-substrate-binding-protein
MKTLPGRRTRILAATTATAGLVLLTACTSSDDGGSGSTTAGGVELVKAGQLTTCTHLPYPPFQSEIDGKVQGFDVALIDLVADDLGVKQQILDTPFENFKTGAFLNSGECDLAAAGMTITEERKKNVDFSDPYFDATQAVLVDKGSGVTSLADVKEKNVKLGAQAQTTGEDHVKGEGFDPVSFESSDAVLNGLRTGQVKAVVIDYPVVQGWLKDEANADAFEVAEQLDTGEQYGFTVKKGNTALREAVDKALADAKADGTYKKLYEQWIGPYDESAASPAA
>CP029601.1|AZM63000.1|6422718_6423564_+|ABC-transporter-permease
MAAPETPEKRSLQPKKKGLTRRRKRSLSRGIQYAVFVAAVIAFAVAADWDRLQNQFAQADIAERMFPDVITLALKNTVLYTVTGFAVGLALGMLIALMRLSSVGPYRWLAGIYIEIFRGLPALLIFIFIGVAVPLAFPGTEIVGGTYGKVALALGLVAAAYMAETIRAGIQAVPKGQMEAARSLGFSPARAMVSIIIPQAFRIILPPLTNELVLLFKDSSLVLFLGVTLEERELSKYGRDLASQTANSTPILVAGLCYLLITIPLGFVVRRMEAKAQEAVK
>CP029601.1|AZM63001.1|6424451_6425117_-|hypothetical-protein
MGHKGRAVLAAAAAITLGLGLSACDDGGDDSAAAQESPAASAPAEESAQESASPEPGTESPAADGGDAAGGDVTAPGTELKVGDRAVVPFEYTSEKKGTVAITVTAIEKGAESDMAPFGAKAKGMTPYFIKMKVENVGGTDMSYASLKLDGVLEGGSGTGVILIGDLPDKCEREAAPADFTTEGASYETCSISATKTAPVVGASFDEGDAYQDEPVVWNAG
>CP029601.1|AZM63002.1|6425336_6428351_-|hypothetical-protein
MAGRKGTSVRFGVLGRLTVWRAGVPLGLGTPKGRLILAVLLARPGLPVTADALAEALWGEERPRSAVKNVQTYVHRLRQLLGEPDRIVRQGEGYLVRAGRDELDATRFDDLAETARAALAAGDPATARRVFGEALDLWRGPAFEGVADVPALTVQAARLDEARLGVLEERVDADLRLGRHDELLGELTALTMEHPFRERMWAQLMLALDRCGRRTEALRAYHRLRAVLAQETGLEPGAEVREVHRAILEGDRAPAPAGADTGAGRPEVPVARMLPPALHDFSGQRAELTRIETVLRAERAAGAPPGLVTVSGPGGIGKTALAVQAAHRLGSAYPDGQLFAALAGARAQPAEPAAVLGRFLRALGVPATAVPDDPEERTALYRGLLAERRVLVVLDDAYDEDQVAPLMPAGGSCGVIITGRVRLGGLGGASRIELREMSREDGLAMLRAGTGDRLASATGTEPDDLVRLCARLPLALRIVASLLVSRPHWRPADLVARLADEQHRLDALRYRDLEVRASFGLSYAGLGPGARRLFRLLGLLEAPDFPLWAAAAAADTSLAEAQDLLDDLVDVHLLDITGTHAGQVRYGFHDLIRAYARERAEAEEAPEVREAAVVRVLCALLALTDIADRDHMGQSMFQRDAPRWRPERVEASLPPSVPPMALLGAERGALVAGVRQAAELGRDELCWELAVGAHALFETERYYDDWQECYDTAMALAAATGNLRGRARLLISMAGLRYMRRRYGPAEEANTEAMRLFERIGDRRGHQEALSNAPFFLVPAGRLSAAVTMGTEAYRLLLADGQAAAALHAYSQVGLAHLQAGRAEAAVEVLTEIVARAREHGIRTLVARDVYWLGQAWLALGRHERAEEAFTELTSLVEDIGSSGPFYLAHAWGCLHLTRGEYAEARRRLLEALDLARTMDDPMFQTRVLADLLDLRLYDVRDGRALRAALDRAEHAVGVARGIHYPYLLAGVLEKTARLREAAGETAAARELDEEAAAVRARVT
>CP029601.1|AZM63003.1|6428413_6429505_+|amidohydrolase
MSERAVLHVKGRILVGPDEVRDELWVVDGRISYDRPAGAREVGTVDGWVLPGLVDAHCHVGLDRHGAVPEDVAEKQALTDRDAGALLLRDAGSPSDTRWTDDRDDLPKIIRAGRHIARTRRYIRNYAWEVEPDDLAAYVAQEARRGDGWVKLVGDWIDRDLGDLSACWPRGAVEAAIAEAHRLGARVTAHCFAEDSLRDLAEAGIDCVEHATGLTDDTIPLFAERGVAIVPTLVNIATFPALADGGEAKFPRWSAHMRRLHERRYDTVRSAYDAGIPVFVGTDAGGSLPHGLAAEEVAELAKAGIPPVEALAAGTWAARTWLGRPGLEEGAPADLVVYDADPRADLRVLADPRRVVLNGRVVG
>CP029601.1|AZM63004.1|6429671_6430625_+|hypothetical-protein
MSHGGPTTLNTINARLSARRWAVVAAATALAAGPAALAGAGSAHATEDQGSASAAVLRTGLDVSLLNKTVHAPLAVSLNEVRAPGGADTATRTALTAGLDGVDGGKPFSVLRAEVADAGATVDGDRAEASTTLAKARLHVPGLPLLSVVELETVASKAVCDAGRTPHASVTLPASATVLGKRVSLTSGGPTEVKVPGVGSVRLDLSKTSTTSTTAAATALRVDVAVDPLKLNVAEVEGTLTLAEAKCSVPAAAAAAGAAEGVEDSADVRPQAARAAEETNLAETGGDAMTPYIAGGAVALLAAGGGAVALTRRARGN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029601_11	11.1\|3358469\|24\|CP029601\|CRISPRCasFinder	3358469-3358492	24	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	115557-115580	3	0.875
CP029601_11	11.1\|3358469\|24\|CP029601\|CRISPRCasFinder	3358469-3358492	24	MT936332	Streptomyces phage phiRKBJ001, complete genome	43918-43941	3	0.875
CP029601_11	11.1\|3358469\|24\|CP029601\|CRISPRCasFinder	3358469-3358492	24	MH019216	Streptomyces phage Wentworth, complete genome	43585-43608	3	0.875
CP029601_11	11.3\|3358565\|24\|CP029601\|CRISPRCasFinder	3358565-3358588	24	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	632596-632619	3	0.875
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP030863	Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence	54991-55017	3	0.889
CP029601_4	4.1\|1151383\|26\|CP029601\|CRISPRCasFinder	1151383-1151408	26	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	189857-189882	4	0.846
CP029601_4	4.2\|1151437\|26\|CP029601\|CRISPRCasFinder	1151437-1151462	26	NZ_CP032314	Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence	30682-30707	4	0.846
CP029601_4	4.2\|1151437\|26\|CP029601\|CRISPRCasFinder	1151437-1151462	26	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	55241-55266	4	0.846
CP029601_4	4.2\|1151437\|26\|CP029601\|CRISPRCasFinder	1151437-1151462	26	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	245086-245111	4	0.846
CP029601_4	4.3\|1151491\|26\|CP029601\|CRISPRCasFinder	1151491-1151516	26	MK376962	Gordonia phage NosilaM, complete genome	2781-2806	4	0.846
CP029601_11	11.1\|3358469\|24\|CP029601\|CRISPRCasFinder	3358469-3358492	24	NZ_CP045374	Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence	56484-56507	4	0.833
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	10551-10577	4	0.852
CP029601_4	4.1\|1151383\|26\|CP029601\|CRISPRCasFinder	1151383-1151408	26	MF324910	Mycobacterium phage GuuelaD, complete genome	73843-73868	5	0.808
CP029601_4	4.1\|1151383\|26\|CP029601\|CRISPRCasFinder	1151383-1151408	26	MT188704	Mesorhizobium phage Cp1R7A-A1, complete genome	130469-130494	5	0.808
CP029601_4	4.2\|1151437\|26\|CP029601\|CRISPRCasFinder	1151437-1151462	26	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1382296-1382321	5	0.808
CP029601_4	4.2\|1151437\|26\|CP029601\|CRISPRCasFinder	1151437-1151462	26	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	430967-430992	5	0.808
CP029601_4	4.3\|1151491\|26\|CP029601\|CRISPRCasFinder	1151491-1151516	26	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	544686-544711	5	0.808
CP029601_4	4.3\|1151491\|26\|CP029601\|CRISPRCasFinder	1151491-1151516	26	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	50267-50292	5	0.808
CP029601_12	12.1\|4313480\|26\|CP029601\|CRISPRCasFinder	4313480-4313505	26	MN369748	Mycobacterium phage Miko, complete genome	38887-38912	5	0.808
CP029601_12	12.1\|4313480\|26\|CP029601\|CRISPRCasFinder	4313480-4313505	26	MF185727	Mycobacterium phage BobSwaget, complete genome	37485-37510	5	0.808
CP029601_12	12.1\|4313480\|26\|CP029601\|CRISPRCasFinder	4313480-4313505	26	MK801735	Mycobacterium Phage Rachaly, complete genome	39032-39057	5	0.808
CP029601_12	12.1\|4313480\|26\|CP029601\|CRISPRCasFinder	4313480-4313505	26	MF324899	Mycobacterium phage Lokk, complete genome	38109-38134	5	0.808
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP024425	Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence	27435-27461	5	0.815
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	281512-281538	5	0.815
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	250147-250173	5	0.815
CP029601_4	4.1\|1151383\|26\|CP029601\|CRISPRCasFinder	1151383-1151408	26	NC_048169	Gordonia phage BrutonGaster, complete genome	9885-9910	6	0.769
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	61724-61750	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	747532-747558	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	747562-747588	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	745973-745999	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	750220-750246	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	737121-737147	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	747562-747588	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NC_019410	Caulobacter phage CcrKarma, complete genome	148334-148360	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NC_019407	Caulobacter phage CcrMagneto, complete genome	146529-146555	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NC_019411	Caulobacter phage CcrSwift, complete genome	147107-147133	6	0.778
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	641017-641043	7	0.741
CP029601_14	14.1\|6412667\|27\|CP029601\|CRISPRCasFinder	6412667-6412693	27	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	936060-936086	7	0.741
CP029601_9	9.1\|3198876\|32\|CP029601\|CRISPRCasFinder	3198876-3198907	32	MK034952	Pseudomonas phage Dobby, complete genome	2839-2870	8	0.75
CP029601_9	9.1\|3198876\|32\|CP029601\|CRISPRCasFinder	3198876-3198907	32	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	78955-78986	9	0.719
CP029601_13	13.1\|4838144\|32\|CP029601\|CRISPRCasFinder	4838144-4838175	32	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1898069-1898100	10	0.688

1. spacer 11.1|3358469|24|CP029601|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 3, identity: 0.875

caggcgggccgacagcccgacccg	CRISPR spacer
caggcgggccgacagctcgacacc	Protospacer
****************.**** *

2. spacer 11.1|3358469|24|CP029601|CRISPRCasFinder matches to MT936332 (Streptomyces phage phiRKBJ001, complete genome) position: , mismatch: 3, identity: 0.875

caggcgggccgacagcccgacccg	CRISPR spacer
caggcgggctgacagcccgtcccc	Protospacer
*********.********* ***

3. spacer 11.1|3358469|24|CP029601|CRISPRCasFinder matches to MH019216 (Streptomyces phage Wentworth, complete genome) position: , mismatch: 3, identity: 0.875

caggcgggccgacagcccgacccg	CRISPR spacer
caggcgggctgacagcccgtcccc	Protospacer
*********.********* ***

4. spacer 11.3|3358565|24|CP029601|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 3, identity: 0.875

tgtacggccccacgtcacgcaccg	CRISPR spacer
tgaacggccccacgtcgcgcacct	Protospacer
** *************.******

5. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP030863 (Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.889

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
cgctccggcatcgccgtcctgtacgcc	Protospacer
 ***** ************** *****

6. spacer 4.1|1151383|26|CP029601|CRISPRCasFinder matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cggtgcgttctcggcggcgtcaccgc	CRISPR spacer
ctgtccgttctcggcggcatcaccga	Protospacer
* ** *************.******

7. spacer 4.2|1151437|26|CP029601|CRISPRCasFinder matches to NZ_CP032314 (Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence) position: , mismatch: 4, identity: 0.846

ggtccggcgcctcgcggatcccccgg	CRISPR spacer
ggtccggcgcctcgcggacccgccct	Protospacer
******************.** **

8. spacer 4.2|1151437|26|CP029601|CRISPRCasFinder matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 4, identity: 0.846

ggtccggcgcctcgcggatcccccgg	CRISPR spacer
agtccgccgcctcgcggatccacccg	Protospacer
.***** ************** ** *

9. spacer 4.2|1151437|26|CP029601|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 4, identity: 0.846

ggtccggcgcctcgcggatcccccgg	CRISPR spacer
tggccggcacctcgcggttcccccgg	Protospacer
 * *****.******** ********

10. spacer 4.3|1151491|26|CP029601|CRISPRCasFinder matches to MK376962 (Gordonia phage NosilaM, complete genome) position: , mismatch: 4, identity: 0.846

gggctggttcttcgccgactcgccac	CRISPR spacer
gggctgggtcttcgccgactcccgaa	Protospacer
******* ************* * *

11. spacer 11.1|3358469|24|CP029601|CRISPRCasFinder matches to NZ_CP045374 (Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence) position: , mismatch: 4, identity: 0.833

caggcgggccgacagcccgacccg	CRISPR spacer
gtcgcgggccgacagcccgacctg	Protospacer
   *******************.*

12. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 4, identity: 0.852

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aactcccgcctcgcagtcctggacgca	Protospacer
*.******* **** ***********

13. spacer 4.1|1151383|26|CP029601|CRISPRCasFinder matches to MF324910 (Mycobacterium phage GuuelaD, complete genome) position: , mismatch: 5, identity: 0.808

cggtgcgttctcggcggcgtcaccgc	CRISPR spacer
gggcgcggtctcggcggcgtcaccat	Protospacer
 **.*** ****************..

14. spacer 4.1|1151383|26|CP029601|CRISPRCasFinder matches to MT188704 (Mesorhizobium phage Cp1R7A-A1, complete genome) position: , mismatch: 5, identity: 0.808

cggtgcgttctcggcggcgtcaccgc	CRISPR spacer
aagtgcgtgctctgcggcgtcaccga	Protospacer
 .****** *** ************

15. spacer 4.2|1151437|26|CP029601|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.808

ggtccggcgcctcgcggatcccccgg	CRISPR spacer
ccgcctgcgcctcgcggatctcccgg	Protospacer
   ** **************.*****

16. spacer 4.2|1151437|26|CP029601|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.808

ggtccggcgcctcgcggatcccccgg	CRISPR spacer
ccgcctgcgcctcgcggatctcccgg	Protospacer
   ** **************.*****

17. spacer 4.3|1151491|26|CP029601|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 5, identity: 0.808

gggctggttcttcgccgactcgccac	CRISPR spacer
acgctggttcttcgccgaatcgcctt	Protospacer
. **************** ***** .

18. spacer 4.3|1151491|26|CP029601|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

gggctggttcttcgccgactcgccac	CRISPR spacer
gggctggttcttcgtcggctcgctga	Protospacer
**************.**.*****..

19. spacer 12.1|4313480|26|CP029601|CRISPRCasFinder matches to MN369748 (Mycobacterium phage Miko, complete genome) position: , mismatch: 5, identity: 0.808

ccacgcgccggctgtacaacacccca	CRISPR spacer
acaagccccggctgtacaacacccat	Protospacer
 ** ** *****************

20. spacer 12.1|4313480|26|CP029601|CRISPRCasFinder matches to MF185727 (Mycobacterium phage BobSwaget, complete genome) position: , mismatch: 5, identity: 0.808

ccacgcgccggctgtacaacacccca	CRISPR spacer
acaagccccggctgtacaacacccat	Protospacer
 ** ** *****************

21. spacer 12.1|4313480|26|CP029601|CRISPRCasFinder matches to MK801735 (Mycobacterium Phage Rachaly, complete genome) position: , mismatch: 5, identity: 0.808

ccacgcgccggctgtacaacacccca	CRISPR spacer
acaagccccggctgtacaacacccat	Protospacer
 ** ** *****************

22. spacer 12.1|4313480|26|CP029601|CRISPRCasFinder matches to MF324899 (Mycobacterium phage Lokk, complete genome) position: , mismatch: 5, identity: 0.808

ccacgcgccggctgtacaacacccca	CRISPR spacer
acaagccccggctgtacaacacccat	Protospacer
 ** ** *****************

23. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP024425 (Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence) position: , mismatch: 5, identity: 0.815

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
ggcgaccgcatcgccgtcatggacgca	Protospacer
.**  ************* *******

24. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
ggaccgcgcagcgccgtcctggacgcc	Protospacer
.* .* **** ****************

25. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 5, identity: 0.815

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
cccgcccgcatcgtcgtcatggacgcc	Protospacer
  * *********.**** ********

26. spacer 4.1|1151383|26|CP029601|CRISPRCasFinder matches to NC_048169 (Gordonia phage BrutonGaster, complete genome) position: , mismatch: 6, identity: 0.769

cggtgcgttctcggcggcgtcaccgc	CRISPR spacer
gtccgcgttctcgtcggcgtcaccga	Protospacer
   .********* ***********

27. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
gaggcacgcatcgccgacctggacgcc	Protospacer
..  * ********** **********

28. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aaggatcgcatcgccgtcctgcacgcc	Protospacer
*.   .*************** *****

29. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aaggatcgcatcgccgtcctgcacgcc	Protospacer
*.   .*************** *****

30. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aaggatcgcatcgccgtcctgcacgcc	Protospacer
*.   .*************** *****

31. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aaggatcgcatcgccgtcctgcacgcc	Protospacer
*.   .*************** *****

32. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aaggatcgcatcgccgtcctgcacgcc	Protospacer
*.   .*************** *****

33. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
aaggatcgcatcgccgtcctgcacgcc	Protospacer
*.   .*************** *****

34. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
tagtcccgcatcgccgcgctggacgca	Protospacer
 . *************. ********

35. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
tagtcccgcatcgccgcgctggacgca	Protospacer
 . *************. ********

36. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NC_019411 (Caulobacter phage CcrSwift, complete genome) position: , mismatch: 6, identity: 0.778

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
tagtcccgcatcgccgcgctggacgca	Protospacer
 . *************. ********

37. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 7, identity: 0.741

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
caaacccgcatcgccgtcctggaccgg	Protospacer
 .  ********************

38. spacer 14.1|6412667|27|CP029601|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.741

agctcccgcatcgccgtcctggacgcc	CRISPR spacer
tttctccgcatcgccgtcctggatgcg	Protospacer
  ...******************.**

39. spacer 9.1|3198876|32|CP029601|CRISPRCasFinder matches to MK034952 (Pseudomonas phage Dobby, complete genome) position: , mismatch: 8, identity: 0.75

gctgcaggtgcgcctgcgttggtgcgaaccag	CRISPR spacer
gctgcaggcgcgcctgcattggttccagctcc	Protospacer
********.********.***** * *.*.

40. spacer 9.1|3198876|32|CP029601|CRISPRCasFinder matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.719

gctgcaggtgcgcctgcgttggtgcgaaccag	CRISPR spacer
tgtgcaggtgcgccggcgttggtgcggggagc	Protospacer
  ************ ***********..  .

41. spacer 13.1|4838144|32|CP029601|CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 10, identity: 0.688

ggctgggcacgactgcgcggggacggcgcggc	CRISPR spacer
aatgtcgcacggctgcgcgcggacggcgccga	Protospacer
...   *****.******* ********* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4466279 : 4517863

Bacillus_virus(14.29%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZM61544.1\|4466279_4466717_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
AZM61545.1\|4466923_4467508_-	reductase	NA	NA	NA	NA
AZM61546.1\|4467857_4469540_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	5.1e-15	36.2
AZM61547.1\|4469656_4470613_+	carbohydrate-binding protein	NA	NA	NA	NA
AZM61548.1\|4470866_4471796_-	1-phosphofructokinase	NA	NA	NA	NA
AZM61549.1\|4471926_4473072_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
AZM64685.1\|4473071_4474001_-	sugar kinase	NA	NA	NA	NA
AZM61550.1\|4474143_4475412_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AZM61551.1\|4475422_4475674_+	DUF3263 domain-containing protein	A0A0A7RXU7	Mycobacterium_phage	2.4e-09	50.0
AZM61552.1\|4475821_4476685_-	trehalose-phosphatase	NA	NA	NA	NA
AZM61553.1\|4476741_4478145_-	trehalose-6-phosphate synthase	NA	NA	NA	NA
AZM64686.1\|4478288_4478972_+	hypothetical protein	NA	NA	NA	NA
AZM61554.1\|4478997_4479969_-	glucosyl-3-phosphoglycerate synthase	NA	NA	NA	NA
AZM61555.1\|4480273_4481569_+	threonine synthase	NA	NA	NA	NA
AZM61556.1\|4481632_4481908_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
AZM61557.1\|4482338_4482542_+	cold-shock protein	Q9AZD3	Lactococcus_phage	9.5e-17	61.7
AZM61558.1\|4482949_4484572_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.7e-153	56.0
AZM61559.1\|4484666_4485236_-	hypothetical protein	NA	NA	NA	NA
AZM61560.1\|4485297_4486239_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AZM61561.1\|4486299_4487241_-	RpiR family transcriptional regulator	NA	NA	NA	NA
AZM61562.1\|4487297_4487699_+	hypothetical protein	NA	NA	NA	NA
AZM61563.1\|4487695_4487974_+	DUF4031 domain-containing protein	NA	NA	NA	NA
AZM61564.1\|4487955_4489017_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZM61565.1\|4489049_4489712_-	hypothetical protein	NA	NA	NA	NA
AZM61566.1\|4489783_4490464_+	hypothetical protein	NA	NA	NA	NA
AZM61567.1\|4490555_4491272_+	copper homeostasis protein CutC	NA	NA	NA	NA
AZM64687.1\|4491448_4493500_-	AAA family ATPase	NA	NA	NA	NA
AZM61568.1\|4493735_4494623_-	transcriptional regulator	NA	NA	NA	NA
AZM61569.1\|4494717_4495626_+	oxidoreductase	NA	NA	NA	NA
AZM64688.1\|4495775_4495961_+	hypothetical protein	NA	NA	NA	NA
AZM61570.1\|4496245_4499125_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AZM64689.1\|4499560_4500235_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AZM61571.1\|4500417_4501095_+	DUF4255 domain-containing protein	NA	NA	NA	NA
AZM64690.1\|4501643_4503608_+	AAA family ATPase	A0A0R6PCP6	Moraxella_phage	2.1e-20	31.2
AZM61572.1\|4503665_4505063_-	hydrolase	NA	NA	NA	NA
AZM61573.1\|4505284_4506880_+\|tail	phage tail protein	J9PVC2	Bacillus_phage	1.7e-60	32.2
AZM61574.1\|4506953_4507397_+\|tail	phage tail protein	NA	NA	NA	NA
AZM61575.1\|4507396_4507888_+	hypothetical protein	NA	NA	NA	NA
AZM61576.1\|4510810_4511545_+	hypothetical protein	NA	NA	NA	NA
AZM61577.1\|4511634_4512078_+\|tail	phage tail protein	NA	NA	NA	NA
AZM61578.1\|4512118_4512865_+	peptidase M23	NA	NA	NA	NA
AZM61579.1\|4512864_4514778_+	type IV secretion protein Rhs	NA	NA	NA	NA
AZM61580.1\|4514853_4515342_+\|plate	baseplate protein	R9TN06	Synechococcus_phage	1.2e-09	31.6
AZM61581.1\|4515341_4517300_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
AZM61582.1\|4517296_4517863_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

5520608 : 5573195

Agrobacterium_phage(22.22%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZM62293.1\|5520608_5523926_-\|protease	serine protease	A0A0K2CNJ2	Brevibacillus_phage	4.6e-07	30.1
AZM62294.1\|5524148_5524697_-	hypothetical protein	NA	NA	NA	NA
AZM62295.1\|5524800_5525262_+	NUDIX hydrolase	NA	NA	NA	NA
AZM62296.1\|5525435_5526620_-	hypothetical protein	NA	NA	NA	NA
AZM62297.1\|5526683_5529257_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	8.9e-51	33.1
AZM62298.1\|5529393_5530041_+	disulfide bond formation protein DsbA	NA	NA	NA	NA
AZM62299.1\|5530292_5531672_-	amino acid transporter	NA	NA	NA	NA
AZM62300.1\|5532048_5532633_+	biotin transporter BioY	NA	NA	NA	NA
AZM62301.1\|5532702_5533434_-	hypothetical protein	NA	NA	NA	NA
AZM62302.1\|5536904_5537390_+	ribose-5-phosphate isomerase	NA	NA	NA	NA
AZM62303.1\|5537435_5538269_+	DNA glycosylase	A0A1V0CNR6	Kaumoebavirus	1.8e-08	25.5
AZM62304.1\|5538276_5539530_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZM62305.1\|5539692_5540871_+	hypothetical protein	NA	NA	NA	NA
AZM62306.1\|5541228_5541690_+	phosphohydrolase	A0A0M3LQS1	Mannheimia_phage	5.0e-13	43.5
AZM62307.1\|5541719_5542916_-	hypothetical protein	NA	NA	NA	NA
AZM62308.1\|5543542_5543737_+	hypothetical protein	NA	NA	NA	NA
AZM62309.1\|5544565_5545981_+	trigger factor	NA	NA	NA	NA
AZM62310.1\|5546208_5546868_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-42	47.7
AZM62311.1\|5546982_5547663_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-40	46.9
AZM62312.1\|5547846_5549133_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.5e-144	61.2
AZM62313.1\|5549206_5550127_-	hypothetical protein	NA	NA	NA	NA
AZM62314.1\|5550167_5551085_-	hypothetical protein	NA	NA	NA	NA
AZM62315.1\|5551222_5553847_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.2e-143	39.3
AZM62316.1\|5554360_5555407_+	acyltransferase	NA	NA	NA	NA
AZM62317.1\|5555462_5556983_+	dihydrofolate synthase	NA	NA	NA	NA
AZM62318.1\|5556989_5557340_+	DUF4233 domain-containing protein	NA	NA	NA	NA
AZM62319.1\|5557449_5557863_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	4.6e-26	45.5
AZM62320.1\|5558190_5559210_+	rod shape-determining protein	NA	NA	NA	NA
AZM62321.1\|5559380_5560322_+	rod shape-determining protein MreC	NA	NA	NA	NA
AZM62322.1\|5560336_5561005_+	rod shape-determining protein MreD	NA	NA	NA	NA
AZM62323.1\|5561117_5563490_+	penicillin-binding protein 2	NA	NA	NA	NA
AZM62324.1\|5563486_5564689_+	rod shape-determining protein RodA	NA	NA	NA	NA
AZM62325.1\|5564775_5566332_+	metal-binding protein	NA	NA	NA	NA
AZM62326.1\|5566404_5568363_+	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA
AZM62327.1\|5568364_5568562_+	hypothetical protein	NA	NA	NA	NA
AZM62328.1\|5568668_5569439_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AZM62329.1\|5569568_5570387_-	sulfite oxidase-like oxidoreductase	NA	NA	NA	NA
AZM62330.1\|5571908_5573195_-\|transposase	IS256 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029601

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection