CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027712	Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083 chromosome, complete genome	2 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027712_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027712_1

416058-416169

Orphan

Consensus_repeat	Method
GCGCTGATTGCGCCGGGCCCGGTGTAAAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027712_1

>merge|CP027712|1|416058-416169|CRISPRCasFinder
GCGCTGATTGCGCCGGGCCCGGTGTAAAGAGGGGAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGAGGGCCGCGCTGATTGCGCTGGGCCCGGTGTAAAGAGGG

>CP027712|1|1|416058-416169|CRISPRCasFinder
GCGCTGATTGCGCCGGGCCCGGTGTAAAGAGGG	GAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGAGGGCC
GCGCTGATTGCGCTGGGCCCGGTGTAAAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027712.1\|AZC99595.1\|412066_413596_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP027712.1\|AZC99599.1\|415108_415564_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP027712.1\|AZC99607.1\|424066_425254_+\|L-carnitine-dehydratase/bile-acid-inducible-protein-F	unknown	unknown	gnl\|CDD\|367110
CP027712.1\|AZC99592.1\|408376_409135_-\|Putative-periplasmic-protein-YibQ	unknown	unknown	gnl\|CDD\|377404
CP027712.1\|AZC99596.1\|413747_414161_+\|Rhodanese-related-sulfurtransferase-YibN	unknown	unknown	gnl\|CDD\|238089
CP027712.1\|AZC99603.1\|419329_419644_-\|hypothetical-protein	unknown	unknown	unknown
CP027712.1\|AZC99604.1\|419691_421104_-\|putative-MFS-type-transporter	unknown	unknown	gnl\|CDD\|340927
CP027712.1\|AZC99598.1\|414473_414956_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	unknown	unknown	gnl\|CDD\|180234
CP027712.1\|AZC99608.1\|425325_426120_+\|Enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236162
CP027712.1\|AZC99591.1\|407558_408224_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	unknown	unknown	gnl\|CDD\|223904
CP027712.1\|AZC99593.1\|409301_410612_-\|Carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|223864
CP027712.1\|AZC99597.1\|414162_414417_+\|Glutaredoxin-3-(Grx3)	unknown	unknown	gnl\|CDD\|274017
CP027712.1\|AZC99610.1\|427678_428881_+\|Acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|181242
CP027712.1\|AZC99600.1\|415628_416003_+\|hypothetical-protein	unknown	unknown	unknown
CP027712.1\|AZC99594.1\|410643_411930_-\|Murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
CP027712.1\|AZC99609.1\|426116_427643_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
CP027712.1\|AZC99605.1\|421300_422200_-\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|176139
CP027712.1\|AZC99606.1\|422312_424034_+\|Acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173843
CP027712.1\|AZC99601.1\|416814_418251_-\|Nitrogen-regulation-protein-NtrC	unknown	unknown	gnl\|CDD\|273818
CP027712.1\|AZC99602.1\|418247_419333_-\|Nitrogen-regulation-protein-NtrB	unknown	unknown	gnl\|CDD\|226370

Protein	Function_ID	Function_description	E-value
CP027712.1\|AZC99595.1\|412066_413596_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP027712.1\|AZC99599.1\|415108_415564_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.05147e-88
CP027712.1\|AZC99607.1\|424066_425254_+\|L-carnitine-dehydratase/bile-acid-inducible-protein-F	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.95662e-151
CP027712.1\|AZC99592.1\|408376_409135_-\|Putative-periplasmic-protein-YibQ	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	7.03917e-92
CP027712.1\|AZC99596.1\|413747_414161_+\|Rhodanese-related-sulfurtransferase-YibN	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	8.17501e-24
CP027712.1\|AZC99604.1\|419691_421104_-\|putative-MFS-type-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.4301e-153
CP027712.1\|AZC99598.1\|414473_414956_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	2.23502e-83
CP027712.1\|AZC99608.1\|425325_426120_+\|Enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236162	PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.	1.54099e-159
CP027712.1\|AZC99591.1\|407558_408224_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.66538e-20
CP027712.1\|AZC99593.1\|409301_410612_-\|Carboxyl-terminal-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	7.50762e-144
CP027712.1\|AZC99597.1\|414162_414417_+\|Glutaredoxin-3-(Grx3)	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
CP027712.1\|AZC99610.1\|427678_428881_+\|Acetyl-CoA-acetyltransferase	gnl\|CDD\|181242	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase.	0
CP027712.1\|AZC99594.1\|410643_411930_-\|Murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	2.58129e-101
CP027712.1\|AZC99609.1\|426116_427643_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
CP027712.1\|AZC99605.1\|421300_422200_-\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|176139	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.08804e-89
CP027712.1\|AZC99606.1\|422312_424034_+\|Acyl-CoA-dehydrogenase	gnl\|CDD\|173843	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.	4.70881e-148
CP027712.1\|AZC99601.1\|416814_418251_-\|Nitrogen-regulation-protein-NtrC	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
CP027712.1\|AZC99602.1\|418247_419333_-\|Nitrogen-regulation-protein-NtrB	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	2.71731e-164

>CP027712.1|AZC99600.1|415628_416003_+|hypothetical-protein
MLRVFGSLAIFGVMVGLMIGRLTTPDPTELQEVQVQPNALVVWFNNEPKVHGEHIDGAVVLLFEAEGRAQKGQLKINDKDANWRVRAAEEGLLLNVVAARALHAEWSGSEVDGRWRLEIRLREE
>CP027712.1|AZC99599.1|415108_415564_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>CP027712.1|AZC99598.1|414473_414956_+|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGDEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGEGTVQ
>CP027712.1|AZC99597.1|414162_414417_+|Glutaredoxin-3-(Grx3)
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>CP027712.1|AZC99596.1|413747_414161_+|Rhodanese-related-sulfurtransferase-YibN
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPTKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>CP027712.1|AZC99595.1|412066_413596_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLCASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAADKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSATSSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGKGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDGFKEFERARQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDASTGQAHTAHTSEPVPFIYVGKRDLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>CP027712.1|AZC99594.1|410643_411930_-|Murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDEEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKAREQDQADLGKVLKTIEETLARQAREAEEARQKALIAQQEAEKKRLREAQASADESPSKPPRATPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDIVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>CP027712.1|AZC99593.1|409301_410612_-|Carboxyl-terminal-protease
MLHLSRLTSLALTIALVIGAPLAFAAETAQSAAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITSEAQDNEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>CP027712.1|AZC99592.1|408376_409135_-|Putative-periplasmic-protein-YibQ
MIGLLCLLAFTSTQAAEPAPRKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELEKRLNAAFKAVPYTSGINNHMGSRMTSQPQAMAWLMGELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEAAIGTQLQTAINLARKQGSAVVIGHPYPQTLAVLERELPRLKAQGIDWIDIKLMISVRSNKAMAGHGKDGVYR
>CP027712.1|AZC99591.1|407558_408224_+|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain
MLLTENFPPYNMAKNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWIMLARDDSKIALQSLEQARKYRIGAYKGDAIAETLAKQGLKPLVVLRDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSAQLYLALNKEVSDETVARLQAALDQLREEGVVEEIMGRYL
>CP027712.1|AZC99601.1|416814_418251_-|Nitrogen-regulation-protein-NtrC
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>CP027712.1|AZC99602.1|418247_419333_-|Nitrogen-regulation-protein-NtrB
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLALCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRISLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>CP027712.1|AZC99603.1|419329_419644_-|hypothetical-protein
MRAPRILDRRTAGYSLAQPRINRTILVHQAAPAPIRSPFWFESTQRSRQSAAKQNFKRLFQGSSASFRSLGLVFAFSRYQRLVRARNPGPARDCLVSKEVNIYP
>CP027712.1|AZC99604.1|419691_421104_-|putative-MFS-type-transporter
MNAAQHAAAHKKARKAGIASFIGTTIEWYDFYAYGIAAALVFGKVFFPADLPAGTATLLSFLTLWAGFIARPIGGIIFGHLGDKIGRKTTLVITLIMMGVATTCIGLLPTYLQIGIWAPIALVVLRIIQGIAVGGEWGGAILIASESAPKGKGILYAAFAQQGSPAGNLLATLVFFGLSALPAPDFLLWGWRIPFLLSAALVLVGMVIRLKLEESDDMKRLIQQKKTVKLPILEVLRKHWQIVLLGAGVLPIIHVTYFKSTFALSWATKELGYSQSTFLSVIVIALVVQFITQPLGAVLVSRMDMRKAVVLMLLPEFFLMPAMFFAVETGVYWIAVLGMCLATVPHSMFYGAVGGILARAFPTRVRYSGLSISYQLCSLLVGGATPVLAQGILNNTGSIVGVAIASAGYALVSLVCMLLLLKRIGHNAADLSTAEQADADELAREPRATLPDEEPIATQQAIDKNPHPAH
>CP027712.1|AZC99605.1|421300_422200_-|Transcriptional-regulator,-LysR-family
MDLKQLRYFVAVAEELHFGRAATRLFISQPALSFDIKKLESQLDVQLLSRNNKSVSLTNAGQVLLDEARYLLLRAEQARRLTLRSAQGFVGRLSIGFVNSILHRGLPQAVKTFEQDHPDTEIVLMEMNSAEQAQALQRGQIDIGFVHWSHFPESIRGEPVLAEPFLCCLPQGHRLADKARIDLAQLANDDFILFPRNVSPHYHDLIIARCVAAGFSPRIRHETRLWQTVVAMVAYEMGVALVPQTLAGTWKEGVHYCEISGDGALSEVHAIRHADNPSAAAESFLTVLKALQKPVAPGL
>CP027712.1|AZC99606.1|422312_424034_+|Acyl-CoA-dehydrogenase
MTALPEPIQDTLNIPDSRGLNLFDCDAGLAALLKVYLAPQLYAQWLPSLRQLGARAGGELDVLALSADKNPPQLRPRTRRGEDLQSIYKHPDFIALERAAYAELGLASMSHCAEPVLPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGSPELVARYLPSLASRDFDRLFQGAMFMTEQAAGSDVSRTETRARLENGEWRLFGDKWFCSNPDADLAMVLARPEDAPEGMKGVSLFLLPKVRPDGSRNAYRILRLKDKLGSRSMASGEISLDGATAYLIGEVGRGFQQMADMINMSRLSNGVRAAGLMRRGVNEALYVARQRRAFGRHLIEMPLMQRQLLKMMLPAEQARSMFMQIATLLPKADAGDEAARKCVRILTPLIKFRACRDARRVTGDAMEVRGGVGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAVTREQALEPLRHYLAGLLAEADLPAASQRLFETVLQRAVAAIEKVAQERRDDQVRLAGSALYHTATAIFMAWEASRQAPDYRRLALAHLLLQHKLLPRDPLRPEASIEPELLTLLANESALSKADAMQLLPA
>CP027712.1|AZC99607.1|424066_425254_+|L-carnitine-dehydratase/bile-acid-inducible-protein-F
MNHSKGALAGLKVIDLSRVLGGPYCSQALADHGADVIKLEPLSGDETRGWGPPFEGADASYFRGVNRNKQGVAVDLSRPAGIQLLMRLLEDADVLMENFKPGTLERWGIGYAEVLSQRFPTLIHCAVSGFGSDGPLGGLPGYDAVIQAMAGLMSVNGEADSGPLRIGLPIVDMVTGLNALAGILLALNERHRSGLGQSLDITLYDCGVSLLHPHLANYFAAGKTPQRTGNAHPNIAPYDSYRTGTEPIFLAVGNDRQFAKLCEQLDAGALLDDPRFADNGCRSVNREALKQALEARLAEHDGTALAQRLIRLGVPCGSIASIDKVVEHPHTRHRGLLVEIGDYRGIGSPVKLSRTPASYRSAPPALGANTREVLEGLGLDNQTIENLFEHGIVRE
>CP027712.1|AZC99608.1|425325_426120_+|Enoyl-CoA-hydratase/isomerase-family-protein
MNPESVSPQPLVLLKQPAPGVALLRLNRPQALNALNMALREELAEHFRRLDSCPETRVVVLTGGDTVFAAGADLSELVNASALQLYARHAERHWQAISACRKPVIAAVNGYALGGGCELAMHCDLIVAGHSARFAQPEIKVGVMPGAGGTQRLLRAIGKFQALRLLLTGCQVPADEALRLGLVSEVVADSETLPRALALAASIAGMPPLAVAQIKEVVLAGMDLPLEQALVLERKAFQLLFGSHDQREGMQAFLEKRKPEYQGK
>CP027712.1|AZC99609.1|426116_427643_+|3-hydroxyacyl-CoA-dehydrogenase
MTTQPLQRIGLVGTGAMGRGIAQVMAMAGLKVFLFDARPGAAGMAREQLATIFAQQIEKARITPQDAAAAMLNLEVVDSLDALRDCQLVIEAIVEDLAAKQQLFRQLEEVLAPDAILASNTSSLSITAIASVCRYPERVAGLHFFNPVPRMRIVEVVDGLATRVGARLQELVRVIGYYPARAKDSPGFIVNHAGRAFGTEALRILSEGVAPAWRIDALLRDSAGFAMGPFELLDLIGLDVSVPVMESVYRQFYEEPRYRPHPVLRLMLAGGHLGRKSGQGFYLYDEPGDTRLPPQAVPSCAVLPPVWIAADDEVGRLRLLDLLERLGARVENGLRPSTSALCLVAPLGDDASEAALRHAMDPSRTVAIDTLTALDSQRCLMLNPATREDMQHAAHALFSADGGTVTLIRDSCGFIVQRTLASIVNLACDIAQQGIASVADIDAAVRLGLGYPLGPLEWGDQLGPERLLQILERLHALTGDPRYRPSGWLRRRALLGLSLRQPENPLPA
>CP027712.1|AZC99610.1|427678_428881_+|Acetyl-CoA-acetyltransferase
MLDAYIYSGLRTPFGRHGGSLASVRPDDLVGPLLARLLETSGLPAEALEEVILGCTNQAGEDSRNLARNALLSAGLPWRVPGQTVNRLCASGLSAVIDAARAITCGEGRLYLAGGVESMSRAPFIMAKAESAYSRSLDVADSTIGARFANPRLVERYGNHSMPETGDNLARLYAISREDADRFAAASQARYQAALRGGVLDDEIMAVELAAGRKGPALTVCDDEHPRARSDLAALSRLPTLFAEGVVTAGNASGINDGAAVLLLGSREIGREHGVVPMARILSSASVGVEPQFMGIGPHGAILLALQRARIGLEQLDLIEINEAFAPQVLACLKALELDFDDPRVNPNGGAIAIGHPLGASGARLVLSACRTLQRNHQRYAVVSLCVGVGQGVAMVIERA

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Crispr_ID: CP027712_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027712_2

2451811-2451926

Orphan

Consensus_repeat	Method
TGTAGCCGCTGCCGAAGGCTGCGATAGGTCCGCAGGACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027712_2

>merge|CP027712|2|2451811-2451926|CRISPRCasFinder
TGTAGCCGCTGCCGAAGGCTGCGATAGGTCCGCAGGACCTCAACAATCGCAAGATCGCCACATCAATCGGCTTTATGTAGCCGCTGCCGCAGGCTGCGATAGGTCCGCAGGACCTC

>CP027712|2|2|2451811-2451926|CRISPRCasFinder
TGTAGCCGCTGCCGAAGGCTGCGATAGGTCCGCAGGACCTC	AACAATCGCAAGATCGCCACATCAATCGGCTTTA
TGTAGCCGCTGCCGCAGGCTGCGATAGGTCCGCAGGACCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027712.1\|AZD01502.1\|2455473_2456577_+\|Selenophosphate-dependent-tRNA-2-selenouridine-synthase	unknown	unknown	gnl\|CDD\|236982
CP027712.1\|AZD01506.1\|2459706_2460363_+\|Amino-acid-ABC-transporter,-permease-protein	unknown	unknown	gnl\|CDD\|223836
CP027712.1\|AZD01503.1\|2456699_2457755_-\|membrane-protein-YraQ	unknown	unknown	gnl\|CDD\|223773
CP027712.1\|AZD01497.1\|2450594_2450768_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369277
CP027712.1\|AZD01505.1\|2458884_2459646_+\|ABC-transporter-amino-acid-binding-protein	unknown	unknown	gnl\|CDD\|270248
CP027712.1\|AZD01495.1\|2449035_2449263_-\|hypothetical-protein	unknown	unknown	unknown
CP027712.1\|AZD01489.1\|2443782_2445033_-\|Glycolate-dehydrogenase,-iron-sulfur-subunit-GlcF	unknown	unknown	gnl\|CDD\|236890
CP027712.1\|AZD01499.1\|2451992_2453036_-\|Purine-nucleoside-permease-precursor	unknown	unknown	gnl\|CDD\|377669
CP027712.1\|AZD01496.1\|2449475_2450255_+\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|380379
CP027712.1\|AZD01493.1\|2447845_2448610_+\|Glycolate-utilization-operon-transcriptional-activator-GlcC	unknown	unknown	gnl\|CDD\|182186
CP027712.1\|AZD01507.1\|2460359_2461106_+\|Amino-acid-ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP027712.1\|AZD01508.1\|2461102_2462392_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223737
CP027712.1\|AZD01500.1\|2453059_2454016_-\|Nucleoside-specific-channel-forming-protein-Tsx-precursor	unknown	unknown	gnl\|CDD\|237911
CP027712.1\|AZD01492.1\|2447640_2447820_-\|hypothetical-protein	unknown	unknown	unknown
CP027712.1\|AZD01504.1\|2457938_2458715_-\|Transcriptional-regulator,-IclR-family	unknown	unknown	gnl\|CDD\|224332
CP027712.1\|AZD01490.1\|2445047_2446112_-\|Glycolate-dehydrogenase,-FAD-binding-subunit-GlcE	unknown	unknown	gnl\|CDD\|236893
CP027712.1\|AZD01498.1\|2450811_2451768_+\|Putative-oxidoreductase	unknown	unknown	gnl\|CDD\|223677
CP027712.1\|AZD01494.1\|2448713_2448884_+\|Metallothionein	unknown	unknown	gnl\|CDD\|366903
CP027712.1\|AZD01501.1\|2454439_2455474_+\|Selenide,water-dikinase	unknown	unknown	gnl\|CDD\|234870
CP027712.1\|AZD01491.1\|2446111_2447611_-\|Glycolate-dehydrogenase,-subunit-GlcD	unknown	unknown	gnl\|CDD\|183043

Protein	Function_ID	Function_description	E-value
CP027712.1\|AZD01502.1\|2455473_2456577_+\|Selenophosphate-dependent-tRNA-2-selenouridine-synthase	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	0
CP027712.1\|AZD01506.1\|2459706_2460363_+\|Amino-acid-ABC-transporter,-permease-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.75969e-77
CP027712.1\|AZD01503.1\|2456699_2457755_-\|membrane-protein-YraQ	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	8.13131e-47
CP027712.1\|AZD01497.1\|2450594_2450768_+\|hypothetical-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	7.97488e-20
CP027712.1\|AZD01505.1\|2458884_2459646_+\|ABC-transporter-amino-acid-binding-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	8.80158e-61
CP027712.1\|AZD01493.1\|2447845_2448610_+\|Glycolate-utilization-operon-transcriptional-activator-GlcC	gnl\|CDD\|182186	PRK09990, PRK09990, DNA-binding transcriptional regulator GlcC; Provisional.	2.92039e-155
CP027712.1\|AZD01489.1\|2443782_2445033_-\|Glycolate-dehydrogenase,-iron-sulfur-subunit-GlcF	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	0
CP027712.1\|AZD01499.1\|2451992_2453036_-\|Purine-nucleoside-permease-precursor	gnl\|CDD\|377669	pfam06516, NUP, Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.	5.33847e-170
CP027712.1\|AZD01496.1\|2449475_2450255_+\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.62696e-33
CP027712.1\|AZD01494.1\|2448713_2448884_+\|Metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	0.000326061
CP027712.1\|AZD01507.1\|2460359_2461106_+\|Amino-acid-ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.27707e-152
CP027712.1\|AZD01508.1\|2461102_2462392_+\|hypothetical-protein	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.83712e-64
CP027712.1\|AZD01500.1\|2453059_2454016_-\|Nucleoside-specific-channel-forming-protein-Tsx-precursor	gnl\|CDD\|237911	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional.	1.28853e-166
CP027712.1\|AZD01504.1\|2457938_2458715_-\|Transcriptional-regulator,-IclR-family	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	5.64172e-80
CP027712.1\|AZD01490.1\|2445047_2446112_-\|Glycolate-dehydrogenase,-FAD-binding-subunit-GlcE	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	0
CP027712.1\|AZD01498.1\|2450811_2451768_+\|Putative-oxidoreductase	gnl\|CDD\|223677	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only].	1.79589e-65
CP027712.1\|AZD01501.1\|2454439_2455474_+\|Selenide,water-dikinase	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
CP027712.1\|AZD01491.1\|2446111_2447611_-\|Glycolate-dehydrogenase,-subunit-GlcD	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	0

>CP027712.1|AZD01498.1|2450811_2451768_+|Putative-oxidoreductase
MHALQFSKTGDLSSLHYVEVPTPVPAADQVLVRIKAAGLNPSDVKNVLGRFPYTTVPRIPGRDFAGVVVEGPQEWVGQEVWGTGKELGFYADGSHAQYVALSAKGVAHKPAQLSFAQAASLGVPYTTAWDALERSGVSAGTTLLVIGGGAVGSAALALAKVRGARVLAAARRPEQVKALQAQGFQTVQLDQPEDLGAQVNEVFAGGAEVIFDTTGFWLPASVAALAPFGRIAIIAAPVDGHVQLPALGLYRKGGSVVGINSLLYGVQACAAMLEQFGRFFDEGLLPLPQGLFESPLEQGVERYHEVNKGSGEKVILLP
>CP027712.1|AZD01497.1|2450594_2450768_+|hypothetical-protein
MHYLISLAIGLGVGLLYGALNFRSPAPPAIALVGLLGMLAGEQLWPMGRQLVSNWLS
>CP027712.1|AZD01496.1|2449475_2450255_+|Transcriptional-regulator,-AraC-family
MALAAPPDLSDTDVPVQPLARTYPRGLFIEPHEHAWGQLLYAMSGVMWVETPNEALVVPPQRAVWLPPGVPHGIRVVTDLQMRNIYLRPCLAATLDSQVQVLQVDNLLRELIVRLVEHDGAPQPEYYDALVGLALLELKRARRSRLKIVLPDSSDRRLISLCQAVMAAPSLDIPFERHAEAAGASVRTLARLFKDGLGMGFAEWRRQVQLATAAAELIQGVPVGTIARELGYSPGSFSDMFRRELGLAPSQYAAGEARA
>CP027712.1|AZD01495.1|2449035_2449263_-|hypothetical-protein
MNNAKLFVIEYTLHGTPKSFIIRSEKMDNAEAWHWASCDAGVGRIGRFGLERVKKTSKPLAEKFGIENVTWRPST
>CP027712.1|AZD01494.1|2448713_2448884_+|Metallothionein
MSNETCACPGCTCKVGAHAIVRHGKHYCCQACASHHANGEPCASTEGCDCAKGAHH
>CP027712.1|AZD01493.1|2447845_2448610_+|Glycolate-utilization-operon-transcriptional-activator-GlcC
MHRSDSGRHQVADVVCERIERLIVDGVLKTGQLLPSERRLTEKLGVSRTALREGLKLLRARGIIETEQGKGSFVAQLSGQGTTSALMHLFSSQPRTLYDLFEVRSLLEGESARLAALRGTEADFVLIGRAYQALLDAHDQALDASAHARLDHAFHLAICEASHNPVLVQTLRSLTDLLLNSVFASVNNLYHRQAQKRQIDRQHARLYNAVTGRLPEQARKAAIAHIQGLCDNLREIENEEQRLVRATLRLEGWN
>CP027712.1|AZD01492.1|2447640_2447820_-|hypothetical-protein
MKKKPDQTDRQAILLIYLAFYKKPGIDDKTNWFDQRSAPWTVRPAGPMMQLSGLPLPAA
>CP027712.1|AZD01491.1|2446111_2447611_-|Glycolate-dehydrogenase,-subunit-GlcD
MNILYDERVDGALPSVDKAALLQALHQRLPDLDLLHQTEDLKPYECDGLSAYRTTPMLVALPRHIEQVQELLRICHERRVPVVARGAGTGLSGGALPLEQGVLLVMARFNQILHIDPAARTARVQPGVRNLAISQAAAPFGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILSVEGERLTLGSDALDAPGFDLLALFTGSEGLLGIITEVTVKLLPKPQLAKVLLAAFDSVEKAGRAVADIIAAGIIPGGLEMMDNLALRAAEDFIHAGYPVDAEAILLCELDGVEADVHDDCDRVRAVLERAGATEVRQARDEAERVRFWAGRKNAFPAVGRLSPDYYCMDGTIPRRALPGVLKAIAALAAEYQLRVANVFHAGDGNMHPLILFDANQPGELDRAEALGGRILELCVAVGGSITGEHGVGREKINQMCAQFNSDELSLFHAVKAAFDPGGLLNPGKNIPTLHRCAEFGAMHVHAGQLPFPELERF
>CP027712.1|AZD01490.1|2445047_2446112_-|Glycolate-dehydrogenase,-FAD-binding-subunit-GlcE
MTALADNDASGELLEQVGQALAGNTPLLIQGGNSKAFLGRMSAGEVLDTRGHRGIVSYDPTELVVTVRAGTPLAELLATLDAAGQMLACEPPAFGDGATVGGMVATGLSGPRRPWAGSVRDFVLGSRVITGTGKLLRFGGEVMKNVAGYDLSRLLVGSYGCLGVLTEVSLKVLPKPRQCLSLSLEMDSAKALARLADWGQQPLPISAASHDGQRLHLRLEGGEGSVAAARDRLGGEPLAADYWANLNEQRLAFFDEGLPLWRLSLPNNTGLLELPGQQLIDWAGAQRWLKSAAPAERIRSLVERVGGHATCYSHGLVDSPFQPLPAVLLRYHRQLKAQLDPQGIFNPGRLYAEL
>CP027712.1|AZD01489.1|2443782_2445033_-|Glycolate-dehydrogenase,-iron-sulfur-subunit-GlcF
MQTTLSEQARQLPRAAEAESILRTCVHCGFCNATCPTYQLLGDELDGPRGRIYLIKQVLEGHEATAKTQLHLDRCLSCRNCETTCPSGVDYHNLLDIGRAVVDAAVPRPLGQRLLRQGLRALAPNPALFKALLGTGATLRPWLPEAVQGKLPRQVQPAKARPTTAHVRRVLLLEGCVQASLSPNTNAATARVLDRLGIAVQAVSEAGCCGAVDYHLDAQEAGLERARRNIDAWWPHLENGAEALVQTASGCGAFIKDYGHLLAHDPRYAARAERVSALARDLVEVLRDEPLEQLHAHSDQRLAFHCPCSLQHAQKLGGAVEAVLKRLGFELTEVPDSHLCCGSAGTYSLTQPELARQLRDNKLNALESGRPEVITTANIGCQTHLDGAGRTPVRHWIELVEAALPPLNASHQSATP
>CP027712.1|AZD01499.1|2451992_2453036_-|Purine-nucleoside-permease-precursor
MHAMTRLSLSVGLACGALLASTAWAAEAPATPIKPKVMLITMFAPEAQHWIERLELKQEVRVPGLSAEYPAIRCNTKDVCLLVTGMGQTNAAASTLALALSPKFDLRKSYFLVAGIAGISPKHGTIGTTAWAHYLVEFGTQWELDSRDAPKDWPTGYLGINTKGPNEKPPLDYKTEVFELNPKLQAKAFALSRRVSLSESKESAAWRLKYPAAPANQPPVVTQCDTLAGNTWFSGTRLSERAEVWTRLLTDNKGEYCTTQQEDNSTYEALLRASREGRVDVQRLAVVRAGSDFDRPEPGGSEVDNLLKYADQGGFVPALENLYRTGNPLVQDILKNWSAWEKGVPEA
>CP027712.1|AZD01500.1|2453059_2454016_-|Nucleoside-specific-channel-forming-protein-Tsx-precursor
MHVPFTPSASRHTLVVSLLLSAVTGLLSATAQAEEKTLDDSAQGESLSPAAAPAKPGPYLSDWYNQDLTLIGSKDISFGPQPADDIYLEYEYFGRKGPFELYGYIDIPKIFNIGNSHDKGVWDHGSPVFMEHEPRISIDYLAGRSLAIGPFKEWYVAFDWIYDHGSNSANRANTLYSGLGTDIDTHSRVNLSANFYGRYQWENYGASNEYSWDGYRAQLKYIVPISKFGNGASLTYIGFTNFDFGSDLHKDNPARTANATVATNVLLYSFTHLRFTLVGRYFHNGGNWQDGSELNFGDGDFRARSNGWGYYAGIGYQF
>CP027712.1|AZD01501.1|2454439_2455474_+|Selenide,water-dikinase
MSEPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQNLDPKLWVGNASRDDAAVYAIDEERGVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAPEIAREVIRGGRAVCDAAGIPLAGGHSIDAPEPIFGLAVTGLVEKRHMKRNDTATAGCLLYLTKPLGIGVLTTAEKKGKLRSADVGLARDWMCTLNKPGSRFGKLDGVTAMTDVTGFGLLGHLVEMADGSGLTARIHYDRVPRLPGVEYYLDQGCIPGGTQRNFDSYADKLGRIQALHKLVLCDPQTSGGLLIAVTPEGNAAFLALAAELGLELAPIGELVERQSTAVEVI
>CP027712.1|AZD01502.1|2455473_2456577_+|Selenophosphate-dependent-tRNA-2-selenouridine-synthase
MPIDITDYREIFLNDRPMMDTRAPVEFSKGAFPGVVNLPLMTDHERQRVGTCYKQQGQQAAIVLGHQLVSGAIKAERIQAWADFARAHPDGYLYCFRGGLRSQIVQQWLKDEAGIDYPRVGGGYKAMRTFLLDTLEGAVAECDFVLLGGMTGIGKTEVLNQLANGLDLEGHANHRGSSFGKRASGQPSNIDFENRLAVDILKKRERGIGGFVLEDENRMIGSCALPLPLYQGMQRFPMVWLEDGLEGRVERILRDYVIDLCAEFVAVHGEDGFARFSERLLESLNNIRKRLGGERHQRLYQLLEAALAEQARSGSVDLHRAWIEGLLKEYYDPMYAFQRESKGARIEFVGEQAAVLEYLRERARQRG
>CP027712.1|AZD01503.1|2456699_2457755_-|membrane-protein-YraQ
MSSLAPASPVRGWSFWWKPALFVLVACVGLYFVKWSPYYAKAFIAADSHSIGASIINDQPSSPLNAALAYAQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGFGSTLRGGLFALPGMMCSCCAAPVAASMRRQNVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVLVLGVSLVAQRIARPEQLPEAAVEAVVEASTGNEGAFFSRWARSLWQLFWSTIPIYVLAVLVLGAARVWLFPHVEGAIGDSLLWLVPLAIVGTLFVIPTAAEIPIVQTMMTLGMGTGPAVALLMTLPSISLPSLLMLRKDFDARVLMTVAGLTMLIGVVCGLIGAALL
>CP027712.1|AZD01504.1|2457938_2458715_-|Transcriptional-regulator,-IclR-family
MSDTPNSLFNQSLEKGLAVLRAFNAAQRTMNLAEIAEAAEINKSSAQRMIHTLEQLGYVRKHPQTKRFQLTPRVMEIGYNYLAADTLVDVANPFLAELAQVTGETTNLTEPDGLDMVYVARFVAPKFIPIHMPIGSRIPMYCTGSGRAYLSALPDQEALAMLQASDRQAHTRHTLTGIDAIHGEIVATRQRGYALNQEELFLGDMSIAAPIIGSQGLPVAAVHVVIPSSRWTLEEAERKLAPSVIECARAIRTSIRTL
>CP027712.1|AZD01505.1|2458884_2459646_+|ABC-transporter-amino-acid-binding-protein
MQKRFRVLALCCALTAGLVGSVSAGAAPVYKVGATATGIPFTFLDVKSQSIEGMMIDAARAVGQAGGFEVDIQQTTFAALIPSLTSNKIDIISAAMLRTPAREKVVQYSNPVFSYGEGLIVRADDNTAYTRMEDFKDQVVGAQVGTVFIDELNKRGIFKEVRGYDSIPDLLRDLALGRIKAGFADRPIVAYQLAQGTQNKVQLVKSYQPVVMGDVCLIVRKGDAQTLDEVNRGIAAIKADGSLERIIEKWKLN
>CP027712.1|AZD01506.1|2459706_2460363_+|Amino-acid-ABC-transporter,-permease-protein
MFLQNALDFLPILLKGAVVTLQVTAGSFVLSSLIGLVFALMMVSKVRSISLFAIGVVNVIRGLPIIVQLFYIYFVLPDFGIQLTAMQAGVIGLGIAYSAYQAENFRAGIQAIHQGQIEAAESIGMRGGMIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFENMTVYTLVALLYLALSLPLSFALRRLEARFSTRRKS
>CP027712.1|AZD01507.1|2460359_2461106_+|Amino-acid-ABC-transporter,-ATP-binding-protein
MIEIKGVHKSFGNVAVLEGIDLSVQSGEVVCLIGPSGSGKSTLLRCINGLESYEQGDILVSGERVDRHGKTIHQLRTQVAMVFQRFNLFPHRTALQNVTEGPIYVKKQNPQQARERAEALLEKVGLAHRMHAYPDELSGGQQQRVAIARALAMDPQAILFDEPTSALDPELVGEVLAVMRKLADEGMTMIVVTHEMGFAQDVADKVCFLHSGKIVEAGPAKQVLSAPRHPRTQDFLKRLLNQGAEVQA
>CP027712.1|AZD01508.1|2461102_2462392_+|hypothetical-protein
MKAAETLRLPPSLWAATATAAVETPALAEDLRVDVAIVGAGYTGLVTALRLAEAGVSVCVLDAGEPGWGASGRNGGQVIPGLKYDPDQLLAKFGAARAEAMLEAAGSAADEVFALIEQHRIACDATRKGWIQPAFSASSLQAIEQRAEQWRRRGVAVELLDRAAVGRRIGSQNYLGGWVDPRAGSLHPLNYARGLARVAQQQGVRIHGQTRVEALQREGGQWQLRTAQGHRVQAQRVVLATNGYTDDLWPRLRQTVIAANSFIIATRPLSAELRQGILPNGEVCSDARRLLLYFKQDAQGRLLLGGRGPFSEPSHSGDWRHLERSLLGLFPQLAGTPIEYRWSGRVALNQSFLPQLHEPQPGLSILLGYNGRGIALSTALGKHLAARLSGASSEFPFPVTPIRPIPLHGLQRLYLGAGIAWYRLLDALR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027712_2	2.1\|2451852\|34\|CP027712\|CRISPRCasFinder	2451852-2451885	34	NZ_CP014857	Lysinibacillus sphaericus III(3)7 plasmid, complete sequence	19494-19527	10	0.706
CP027712_2	2.1\|2451852\|34\|CP027712\|CRISPRCasFinder	2451852-2451885	34	NC_010381	Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence	175028-175061	10	0.706
CP027712_2	2.1\|2451852\|34\|CP027712\|CRISPRCasFinder	2451852-2451885	34	MT075580	Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence	46825-46858	10	0.706
CP027712_2	2.1\|2451852\|34\|CP027712\|CRISPRCasFinder	2451852-2451885	34	NZ_CP014644	Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence	79747-79780	10	0.706

1. spacer 2.1|2451852|34|CP027712|CRISPRCasFinder matches to NZ_CP014857 (Lysinibacillus sphaericus III(3)7 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

aacaatcgcaagatcgccacatcaatcggcttta	CRISPR spacer
gctcctaacaatatcgccacatcattcggcttaa	Protospacer
. .  * .*** ************ ******* *

2. spacer 2.1|2451852|34|CP027712|CRISPRCasFinder matches to NC_010381 (Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequence) position: , mismatch: 10, identity: 0.706

aacaatcgcaagatcgccacatcaatcggcttta	CRISPR spacer
gctcctaacaatatcgccacatcattcggcttaa	Protospacer
. .  * .*** ************ ******* *

3. spacer 2.1|2451852|34|CP027712|CRISPRCasFinder matches to MT075580 (Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence) position: , mismatch: 10, identity: 0.706

aacaatcgcaagatcgccacatcaatcggcttta	CRISPR spacer
gctcctaacaatatcgccacatcattcggcttaa	Protospacer
. .  * .*** ************ ******* *

4. spacer 2.1|2451852|34|CP027712|CRISPRCasFinder matches to NZ_CP014644 (Lysinibacillus sphaericus strain OT4b.25 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacaatcgcaagatcgccacatcaatcggcttta	CRISPR spacer
gctcctaacaatatcgccacatcattcggcttaa	Protospacer
. .  * .*** ************ ******* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1316369 : 1404235

Pseudomonas_phage(41.18%)

plate,tail,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZD00400.1\|1316369_1317722_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZD00401.1\|1317796_1320184_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZD00402.1\|1320229_1320733_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZD00403.1\|1320736_1321792_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZD00404.1\|1321901_1322342_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZD00405.1\|1322338_1323115_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZD00406.1\|1323117_1324248_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZD00407.1\|1324259_1324892_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
AZD00408.1\|1325104_1328629_+	DNA polymerase III alpha subunit	A0A2L1IZ23	Streptomyces_phage	5.2e-195	38.0
AZD00409.1\|1328769_1329717_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZD00410.1\|1329836_1331165_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AZD00411.1\|1331210_1331354_+	hypothetical protein	NA	NA	NA	NA
AZD00412.1\|1331439_1333071_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
AZD00413.1\|1333076_1333922_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	3.6e-49	42.8
AZD00414.1\|1334079_1335369_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	2.6e-136	59.0
AZD00415.1\|1335541_1335820_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZD00416.1\|1335816_1336524_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZD00417.1\|1336645_1337542_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZD00418.1\|1337648_1338761_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
AZD00419.1\|1338849_1339695_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZD00420.1\|1339747_1340221_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZD00421.1\|1340217_1341276_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZD00422.1\|1341263_1342013_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.2e-68	52.2
AZD00423.1\|1342012_1342690_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
AZD00424.1\|1342899_1343733_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
AZD00425.1\|1343839_1344799_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.9e-29	35.4
AZD00426.1\|1345345_1345669_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZD00427.1\|1345811_1348391_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.4e-27	23.5
AZD00428.1\|1348587_1349313_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.5e-125	91.8
AZD00429.1\|1350161_1350296_+	hypothetical protein	NA	NA	NA	NA
AZD00430.1\|1350439_1350787_+	Holin	B5TK61	Pseudomonas_phage	7.7e-51	87.7
AZD00431.1\|1350970_1351735_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	8.9e-07	26.3
AZD00432.1\|1351968_1352493_+	hypothetical protein	NA	NA	NA	NA
AZD00433.1\|1352496_1353105_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	6.3e-48	60.4
AZD00434.1\|1353119_1353452_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
AZD00435.1\|1353448_1354444_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.8e-108	63.5
AZD00436.1\|1354440_1355175_+	Tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.2e-40	52.0
AZD00437.1\|1355171_1355702_+\|tail	Phage tail fiber	A2I2X8	Vibrio_virus	2.0e-50	62.5
AZD00438.1\|1355815_1356436_+	hypothetical protein	NA	NA	NA	NA
AZD00439.1\|1356445_1356697_+	hypothetical protein	H2BCU0	Synechococcus_phage	3.5e-05	41.1
AZD00440.1\|1356782_1357004_+	hypothetical protein	NA	NA	NA	NA
AZD00441.1\|1357006_1358173_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	5.0e-126	57.7
AZD00442.1\|1358172_1358679_+	hypothetical protein	Q6R4W3	Vibrio_virus	5.8e-23	35.1
AZD00443.1\|1358832_1359444_+	hypothetical protein	B0ZSH0	Halomonas_phage	4.0e-26	35.5
AZD00444.1\|1359440_1359566_+	hypothetical protein	NA	NA	NA	NA
AZD00445.1\|1359572_1361762_+\|tail	Phage tail length tape-measure protein	A0A2H4JAA5	uncultured_Caudovirales_phage	2.1e-08	50.7
AZD00446.1\|1361761_1362145_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	1.0e-40	60.6
AZD00447.1\|1362137_1362350_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	6.9e-18	61.4
AZD00448.1\|1362359_1363376_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.0e-106	57.5
AZD00449.1\|1363515_1364100_+	hypothetical protein	B5TK65	Pseudomonas_phage	5.8e-75	71.5
AZD00450.1\|1364096_1364279_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	2.5e-24	91.7
AZD00451.1\|1364278_1365775_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	1.1e-255	90.6
AZD00452.1\|1365841_1366189_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AZD00453.1\|1366185_1366482_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AZD00454.1\|1366612_1368565_+\|tail	Phage tail length tape-measure protein	B5TK70	Pseudomonas_phage	1.2e-42	50.6
AZD00455.1\|1368551_1369790_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	2.9e-180	75.5
AZD00456.1\|1369793_1370834_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	2.3e-162	82.9
AZD00457.1\|1370898_1371408_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	2.9e-78	88.2
AZD00458.1\|1371407_1371806_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	4.8e-65	88.6
AZD00459.1\|1371795_1372836_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	2.3e-167	87.3
AZD00460.1\|1372823_1373423_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	2.9e-106	91.5
AZD00461.1\|1373434_1374289_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
AZD00462.1\|1374293_1374935_+\|tail	putative tail fiber assembly-like protein	B5TK78	Pseudomonas_phage	1.9e-39	62.6
AZD00463.1\|1375241_1376792_+\|tail	Prophage tail fiber protein	A4PE45	Ralstonia_virus	1.5e-37	53.6
AZD00464.1\|1376793_1377264_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.3e-07	34.2
AZD00465.1\|1377658_1378723_+\|tail	Prophage tail fiber protein	B5TK79	Pseudomonas_phage	8.0e-115	58.5
AZD00466.1\|1378732_1379332_+\|tail	Putative tail fiber assembly protein p37	B5TK80	Pseudomonas_phage	6.4e-45	47.2
AZD00467.1\|1379353_1379917_+	Lytic enzyme	B5TK83	Pseudomonas_phage	2.6e-88	84.4
AZD00468.1\|1379898_1380435_+	hypothetical protein	B5TK84	Pseudomonas_phage	5.7e-61	72.5
AZD00469.1\|1380517_1381018_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.7e-73	86.7
AZD00470.1\|1381101_1382154_+	RecA protein	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
AZD00471.1\|1382162_1382630_+	Regulatory protein RecX	NA	NA	NA	NA
AZD00472.1\|1382675_1383791_-	Decarboxylase family protein	NA	NA	NA	NA
AZD00473.1\|1384186_1384315_-	hypothetical protein	NA	NA	NA	NA
AZD00474.1\|1384324_1384453_-	hypothetical protein	NA	NA	NA	NA
AZD00475.1\|1384469_1384892_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZD00476.1\|1385081_1385792_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZD00477.1\|1386125_1386776_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZD00478.1\|1386851_1387214_+	Diacylglycerol kinase	NA	NA	NA	NA
AZD00479.1\|1387210_1388137_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZD00480.1\|1388272_1389052_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZD00481.1\|1389124_1389820_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZD00482.1\|1389882_1390344_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	1.9e-36	50.7
AZD00483.1\|1390410_1391121_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZD00484.1\|1391203_1391677_-	Acetyltransferase	NA	NA	NA	NA
AZD00485.1\|1391783_1393121_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZD00486.1\|1393221_1393491_-	hypothetical protein	NA	NA	NA	NA
AZD00487.1\|1393512_1395354_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	1.0e-77	35.0
AZD00488.1\|1395556_1396852_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA
AZD00489.1\|1396851_1399500_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA
AZD00490.1\|1400418_1401483_+	DNA polymerase IV	NA	NA	NA	NA
AZD00491.1\|1401548_1402502_-	putative lipoprotein	NA	NA	NA	NA
AZD00492.1\|1402519_1404235_-\|tRNA	Prolyl-tRNA synthetase, bacterial type	NA	NA	NA	NA

DBSCAN-SWA_2

1549870 : 1617979

uncultured_Caudovirales_phage(42.86%)

tail,integrase,plate,terminase,protease

attL 1545470:1545492|attR 1550270:1550292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1545470:1545492	attL	NA	NA	NA	NA
AZD00635.1\|1549870_1550038_-\|integrase	Phage integrase, site-specific tyrosine recombinase	NA	NA	NA	NA
AZD00636.1\|1550550_1551435_-	(R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase)	NA	NA	NA	NA
1550270:1550292	attR	NA	NA	NA	NA
AZD00637.1\|1551786_1552479_-	Ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA
AZD00638.1\|1552512_1552746_-	DNA/RNA helicase of superfamily II	NA	NA	NA	NA
AZD00639.1\|1552738_1554226_-	GGDEF domain protein	A0A127AWB9	Bacillus_phage	4.5e-23	39.2
AZD00640.1\|1554498_1554924_+	putative lipoprotein	NA	NA	NA	NA
AZD00641.1\|1554978_1556091_-	3-hydroxyisobutyryl-CoA hydrolase	NA	NA	NA	NA
AZD00642.1\|1556222_1556915_+	Uracil-DNA glycosylase, family 1	S4VYQ4	Pandoravirus	9.7e-53	45.2
AZD00643.1\|1557086_1558118_-	Ammonia monooxygenase	NA	NA	NA	NA
AZD00644.1\|1558110_1559625_-	Tricarboxylate transport membrane protein TctA	NA	NA	NA	NA
AZD00645.1\|1559626_1560085_-	Tricarboxylate transport protein TctB	NA	NA	NA	NA
AZD00646.1\|1560141_1561131_-	Tricarboxylate transport protein TctC	NA	NA	NA	NA
AZD00647.1\|1561211_1562504_-	Outer membrane low permeability porin, OccK5/OpdH tricarboxylate	NA	NA	NA	NA
AZD00648.1\|1562740_1563412_+	Tricarboxylate transport transcriptional regulator TctD	NA	NA	NA	NA
AZD00649.1\|1563404_1564790_+	Tricarboxylate transport sensor protein TctE	W8CYF6	Bacillus_phage	6.1e-14	29.9
AZD00650.1\|1564838_1565660_-	HD-GYP domain (HD superfamily hydrolase)	A0A1C3NFB0	Phage_NCTB	1.1e-26	31.4
AZD00651.1\|1565697_1566639_-	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	NA	NA	NA	NA
AZD00652.1\|1566788_1567043_+	Succinate dehydrogenase flavin-adding protein, antitoxin of CptAB toxin-antitoxin	NA	NA	NA	NA
AZD00653.1\|1567026_1567479_+	hypothetical protein	NA	NA	NA	NA
AZD00654.1\|1567447_1569064_-	L-aspartate oxidase	NA	NA	NA	NA
AZD00655.1\|1569633_1570215_+	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	6.3e-05	23.5
AZD00656.1\|1570246_1570834_+	Sigma factor RpoE negative regulatory protein RseA	NA	NA	NA	NA
AZD00657.1\|1570842_1571805_+	Sigma factor RpoE negative regulatory protein RseB precursor	NA	NA	NA	NA
AZD00658.1\|1571823_1571949_-	hypothetical protein	NA	NA	NA	NA
AZD00659.1\|1572053_1573481_+\|protease	HtrA protease/chaperone protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.9e-28	31.3
AZD00660.1\|1573557_1574991_-\|protease	Exported zinc metalloprotease YfgC precursor	NA	NA	NA	NA
AZD00661.1\|1575088_1575328_+	Rhodanese-like domain protein	NA	NA	NA	NA
AZD00662.1\|1575369_1576440_+	Putative permease PerM (YfgO)	NA	NA	NA	NA
AZD00663.1\|1576529_1577003_-	Thiol peroxidase, Bcp-type	NA	NA	NA	NA
AZD00664.1\|1577013_1577574_-	Glycine cleavage system transcriptional antiactivator GcvR	NA	NA	NA	NA
AZD00665.1\|1577901_1578780_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
AZD00666.1\|1578797_1579910_+	Outer membrane beta-barrel assembly protein BamC	NA	NA	NA	NA
AZD00667.1\|1579914_1580673_+	Metal-dependent hydrolase of the beta-lactamase superfamily I	NA	NA	NA	NA
AZD00668.1\|1580701_1581412_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	3.0e-41	37.1
AZD00669.1\|1582042_1582750_+	hypothetical protein	NA	NA	NA	NA
AZD00670.1\|1582739_1583444_+	hypothetical protein	NA	NA	NA	NA
AZD00671.1\|1584079_1585315_-	Mobile element protein	A0A2H4JGM5	uncultured_Caudovirales_phage	4.9e-55	36.6
AZD00672.1\|1585311_1585566_-	hypothetical protein	NA	NA	NA	NA
AZD00673.1\|1585581_1585803_-	Phage protein	Q9ZXI5	Pseudomonas_virus	1.3e-14	64.1
AZD00674.1\|1585795_1586794_-	hypothetical protein	NA	NA	NA	NA
AZD00675.1\|1586873_1587095_-	hypothetical protein	NA	NA	NA	NA
AZD00676.1\|1587091_1587496_-	hypothetical protein	NA	NA	NA	NA
AZD00677.1\|1587543_1587861_-	transcriptional regulator, putative	NA	NA	NA	NA
AZD00678.1\|1588019_1588310_-	DNA-binding protein Roi-related protein	NA	NA	NA	NA
AZD00679.1\|1588319_1588910_-	hypothetical protein	NA	NA	NA	NA
AZD00680.1\|1588906_1589083_-	hypothetical protein	NA	NA	NA	NA
AZD00681.1\|1589301_1589439_-	hypothetical protein	NA	NA	NA	NA
AZD00682.1\|1589988_1590720_-	repressor protein c2	A5VW98	Enterobacteria_phage	1.4e-30	37.3
AZD00683.1\|1590799_1591060_+	Regulatory protein Cro of bacteriophage	A0A0D4DBS7	Acinetobacter_phage	2.5e-09	43.6
AZD00684.1\|1591397_1591916_+	hypothetical protein	NA	NA	NA	NA
AZD00685.1\|1592125_1594342_+	DNA primase, phage associated	A0A2D1GN57	Marinobacter_phage	1.1e-190	47.0
AZD00686.1\|1594334_1594697_+	hypothetical protein	NA	NA	NA	NA
AZD00687.1\|1595225_1595573_+	Holin	A0A2H4J893	uncultured_Caudovirales_phage	1.3e-42	79.6
AZD00688.1\|1595710_1596232_+\|terminase	Phage DNA packaging protein, Nu1 subunit of terminase	A0A2D1GMW4	Marinobacter_phage	4.3e-21	40.5
AZD00689.1\|1596236_1598162_+\|terminase	Phage terminase, large subunit	A0A2D1GMT1	Marinobacter_phage	8.1e-166	48.6
AZD00690.1\|1598174_1598390_+	hypothetical protein	NA	NA	NA	NA
AZD00691.1\|1598392_1600000_+	hypothetical protein	A0A0C5AJ48	Bacteriophage	1.8e-94	42.9
AZD00692.1\|1600002_1601223_+\|protease	Periplasmic serine protease (ClpP class)	A0A219YB02	Aeromonas_phage	1.0e-49	43.0
AZD00693.1\|1601234_1601585_+	hypothetical protein	NA	NA	NA	NA
AZD00694.1\|1601596_1602628_+	hypothetical protein	A0A0C5ABI0	Bacteriophage	4.9e-69	41.2
AZD00695.1\|1602629_1602809_+	hypothetical protein	NA	NA	NA	NA
AZD00696.1\|1602810_1603131_+	hypothetical protein	NA	NA	NA	NA
AZD00697.1\|1603127_1603790_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.4e-72	61.5
AZD00698.1\|1603782_1604316_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.4e-37	47.7
AZD00699.1\|1604312_1604894_+\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	9.6e-54	63.1
AZD00700.1\|1604937_1605153_+	hypothetical protein	NA	NA	NA	NA
AZD00701.1\|1605155_1605482_+\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	65.1
AZD00702.1\|1605478_1606360_+\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	1.1e-109	68.9
AZD00703.1\|1606361_1606973_+\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	3.1e-63	66.5
AZD00704.1\|1607067_1608513_+\|tail	Phage tail fiber protein	A0A077K818	Ralstonia_phage	5.9e-68	57.4
AZD00705.1\|1609045_1610215_+\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	1.2e-180	81.0
AZD00706.1\|1610227_1610737_+\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.6e-65	71.9
AZD00707.1\|1610761_1611058_+	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	2.3e-19	56.4
AZD00708.1\|1611189_1613790_+	Phage protein	A0A2H4JG00	uncultured_Caudovirales_phage	7.8e-71	32.3
AZD00709.1\|1613799_1614645_+	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	9.3e-74	51.8
AZD00710.1\|1614619_1614826_+\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	7.1e-20	68.7
AZD00711.1\|1614882_1615962_+\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	1.1e-148	74.6
AZD00712.1\|1615958_1616510_+	Lytic enzyme	B5TK83	Pseudomonas_phage	1.2e-77	78.0
AZD00713.1\|1616506_1617034_+	hypothetical protein	B5TK84	Pseudomonas_phage	8.4e-49	64.5
AZD00714.1\|1617184_1617979_+	Dam modification methylase	C7BGE1	Burkholderia_phage	4.5e-102	66.5

DBSCAN-SWA_3

2309840 : 2361838

Pseudomonas_phage(52.94%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZD01341.1\|2309840_2312003_-	C-5 cytosine-specific DNA methylase family protein	Q5QF27	Pseudomonas_virus	8.0e-255	61.3
AZD01342.1\|2312338_2312482_-	hypothetical protein	NA	NA	NA	NA
AZD01343.1\|2312534_2313629_+	hypothetical protein	NA	NA	NA	NA
AZD01344.1\|2313859_2314156_-	hypothetical protein	A0A1B0Z2L8	Pseudomonas_phage	3.0e-11	53.0
AZD01345.1\|2314237_2314651_-	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	4.0e-38	57.4
AZD01346.1\|2314757_2315360_+	hypothetical protein	NA	NA	NA	NA
AZD01347.1\|2315636_2316074_-	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	2.1e-05	31.5
AZD01348.1\|2316084_2316648_-	hypothetical protein	A0A2H4IZG3	uncultured_Caudovirales_phage	4.0e-73	75.9
AZD01349.1\|2316644_2317394_-	Phage exonuclease	I3PUZ3	Vibrio_phage	9.2e-49	44.9
AZD01350.1\|2317533_2317707_-	hypothetical protein	A0A0S2SY66	Pseudomonas_phage	1.5e-07	54.4
AZD01351.1\|2317703_2317904_-	hypothetical protein	NA	NA	NA	NA
AZD01352.1\|2317900_2318092_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	6.2e-10	50.8
AZD01353.1\|2318088_2318520_-	hypothetical protein	NA	NA	NA	NA
AZD01354.1\|2318662_2318830_-	hypothetical protein	NA	NA	NA	NA
AZD01355.1\|2319291_2320152_-	Phage protein	A0A1B0YZX8	Pseudomonas_phage	1.2e-89	63.6
AZD01356.1\|2320685_2321870_-	hypothetical protein	NA	NA	NA	NA
AZD01357.1\|2321997_2323092_-	Putative cI prophage repressor protein	A0A2H4IZH7	uncultured_Caudovirales_phage	2.1e-94	65.5
AZD01358.1\|2323090_2323279_+	Phage protein	B5WZX7	Pseudomonas_phage	9.1e-14	64.5
AZD01359.1\|2323297_2323477_+	hypothetical protein	NA	NA	NA	NA
AZD01360.1\|2323543_2323750_+	hypothetical protein	NA	NA	NA	NA
AZD01361.1\|2323771_2323981_+	hypothetical protein	NA	NA	NA	NA
AZD01362.1\|2324093_2324231_+	hypothetical protein	NA	NA	NA	NA
AZD01363.1\|2324648_2325620_+	Primosomal protein I	A0A1B0VME0	Pseudomonas_phage	3.9e-116	75.1
AZD01364.1\|2325606_2326401_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.2e-54	47.3
AZD01365.1\|2326400_2326907_+	hypothetical protein	Q9MC52	Pseudomonas_phage	3.8e-14	34.5
AZD01366.1\|2326903_2327290_+	hypothetical protein	NA	NA	NA	NA
AZD01367.1\|2327286_2327757_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	1.3e-53	62.8
AZD01368.1\|2327753_2328335_+	NinG recombination protein	A0A125RNK9	Pseudomonas_phage	4.4e-75	70.6
AZD01369.1\|2328331_2329003_+	hypothetical protein	A0A2H4J9G7	uncultured_Caudovirales_phage	3.7e-81	67.7
AZD01370.1\|2329191_2329731_+	hypothetical protein	NA	NA	NA	NA
AZD01371.1\|2330079_2330271_+	hypothetical protein	NA	NA	NA	NA
AZD01372.1\|2330267_2330564_-	hypothetical protein	A0A2H4J0J5	uncultured_Caudovirales_phage	5.4e-29	63.3
AZD01373.1\|2330702_2331026_+	hypothetical protein	A0A1B0VME9	Pseudomonas_phage	1.7e-39	83.2
AZD01374.1\|2331027_2331300_+	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	2.6e-33	77.5
AZD01375.1\|2331304_2331601_+	hypothetical protein	V5K3F8	Pseudomonas_phage	2.3e-11	35.0
AZD01376.1\|2332429_2333041_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	9.6e-97	83.0
AZD01377.1\|2333072_2333534_+	Phage protein	A0A1B0VMH2	Pseudomonas_phage	9.3e-52	78.1
AZD01378.1\|2333520_2334822_+\|terminase	Phage terminase	A0A1B1P9C9	Acinetobacter_phage	8.2e-146	58.3
AZD01379.1\|2334818_2336237_+	structural protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-268	93.9
AZD01380.1\|2336211_2337306_+	Phage protein	A0A1B0VMF3	Pseudomonas_phage	7.8e-182	91.4
AZD01381.1\|2337817_2338546_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	3.1e-118	92.1
AZD01382.1\|2338558_2339521_+	putative phage protein	A0A1B0VMF8	Pseudomonas_phage	2.9e-164	90.6
AZD01383.1\|2339566_2340157_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	1.2e-27	41.4
AZD01384.1\|2340211_2340715_+	phage-related conserved hypothetical protein	A0A1B0VND3	Pseudomonas_phage	5.9e-76	86.2
AZD01385.1\|2340981_2341350_+	phage-related conserved hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	1.7e-48	80.0
AZD01386.1\|2341346_2341943_+	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	4.1e-52	52.3
AZD01387.1\|2341939_2342356_+	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	2.0e-45	65.2
AZD01388.1\|2342754_2343402_+	putative phage protein	A0A2H4J6K6	uncultured_Caudovirales_phage	4.3e-63	58.6
AZD01389.1\|2343411_2343795_+	hypothetical protein	A0A2H4J9Y6	uncultured_Caudovirales_phage	6.8e-24	46.5
AZD01390.1\|2343848_2344115_+	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	9.2e-20	60.0
AZD01391.1\|2344142_2347142_+\|tail	Phage tail length tape-measure protein 1	A0A2H4J9A1	uncultured_Caudovirales_phage	6.1e-176	43.8
AZD01392.1\|2347141_2347480_+	Phage protein	A0A2H4JI07	uncultured_Caudovirales_phage	2.2e-50	81.2
AZD01393.1\|2347489_2348239_+\|tail	Phage minor tail protein	A0A2H4J4Q5	uncultured_Caudovirales_phage	9.3e-118	80.3
AZD01394.1\|2348241_2349042_+\|tail	Phage tail assembly protein	A0A2H4J1J7	uncultured_Caudovirales_phage	2.2e-133	86.0
AZD01395.1\|2349019_2349415_-	hypothetical protein	NA	NA	NA	NA
AZD01396.1\|2349485_2349752_+	hypothetical protein	A0A0S2SYE8	Pseudomonas_phage	2.3e-18	61.6
AZD01397.1\|2350218_2350413_+	hypothetical protein	NA	NA	NA	NA
AZD01398.1\|2350811_2351138_+	hypothetical protein	NA	NA	NA	NA
AZD01399.1\|2351525_2352146_+\|tail	Phage tail assembly protein I	A0A2H4J1H0	uncultured_Caudovirales_phage	9.9e-57	57.9
AZD01400.1\|2352227_2353244_+	Phage protein	A0A0M4S6X1	Salmonella_phage	1.9e-65	43.8
AZD01401.1\|2353302_2356575_+\|tail	Phage tail fiber protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	77.8
AZD01402.1\|2356613_2356871_+	hypothetical protein	NA	NA	NA	NA
AZD01403.1\|2356879_2357605_+	hypothetical protein	A0A059VF40	Pseudomonas_phage	8.1e-10	30.1
AZD01404.1\|2357661_2358222_+	hypothetical protein	A0A2H4J2B7	uncultured_Caudovirales_phage	1.4e-09	41.2
AZD01405.1\|2358218_2358614_+\|tail	Phage tail fiber protein	A0A2P1JUG3	Erwinia_phage	2.1e-12	39.7
AZD01406.1\|2358671_2359097_+	structural protein P5, putative	A0A2H4J6R1	uncultured_Caudovirales_phage	2.5e-67	91.4
AZD01407.1\|2359093_2359465_+	hypothetical protein	H2BDA0	Pseudomonas_phage	3.4e-20	52.5
AZD01408.1\|2359461_2359719_+	Phage protein	B5WZU5	Pseudomonas_phage	1.8e-20	64.7
AZD01409.1\|2359780_2361838_-	O-antigen acetylase	A0A1R3Y5Q6	Salmonella_virus	4.9e-92	40.4

DBSCAN-SWA_4

4379448 : 4385707

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZD03194.1\|4379448_4379841_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.7e-59	84.6
AZD03195.1\|4379844_4380207_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.1e-43	72.5
AZD03196.1\|4380206_4380506_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.7e-33	70.7
AZD03197.1\|4380502_4380838_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	4.2e-46	81.1
AZD03198.1\|4380834_4381836_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	6.1e-165	84.4
AZD03199.1\|4381924_4382932_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZD03200.1\|4383031_4384426_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZD03201.1\|4384426_4385707_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.7e-101	54.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027712

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection