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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034393 Campylobacter jejuni subsp. jejuni strain CLB104 chromosome, complete genome 1 crisprs DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3 0 7 4 0

Results visualization

1. CP034393
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034393_2 1571486-1571786 TypeII NA
4 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 MN530981 Campylobacter phage DA10, complete genome 18013-18041 0 1.0
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 MN530981 Campylobacter phage DA10, complete genome 18013-18041 0 1.0
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 MN530981 Campylobacter phage DA10, complete genome 27197-27225 1 0.966
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 MN530981 Campylobacter phage DA10, complete genome 27197-27225 1 0.966
CP034393_2 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT 1571523-1571551 29 NC_010815 Geobacter lovleyi SZ plasmid pGLOV01, complete sequence 2289-2317 5 0.828
CP034393_2 2.5|1571524|29|CP034393|PILER-CR 1571524-1571552 29 NC_010815 Geobacter lovleyi SZ plasmid pGLOV01, complete sequence 2289-2317 5 0.828
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NZ_CP047429 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence 110082-110110 6 0.793
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP022536 Spiroplasma corruscae strain EC-1 plasmid unnamed, complete sequence 25794-25822 6 0.793
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NZ_CP047429 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence 110082-110110 6 0.793
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP022536 Spiroplasma corruscae strain EC-1 plasmid unnamed, complete sequence 25794-25822 6 0.793
CP034393_2 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT 1571523-1571551 29 NZ_CP042168 Burkholderia contaminans strain ZCC plasmid unnamed2, complete sequence 68629-68657 7 0.759
CP034393_2 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT 1571523-1571551 29 NZ_CP046611 Burkholderia contaminans strain XL73 plasmid unnamed2, complete sequence 10121-10149 7 0.759
CP034393_2 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT 1571523-1571551 29 MN103543 Pseudomonas phage vB_PaeM_PS119XW, complete genome 154149-154177 7 0.759
CP034393_2 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT 1571523-1571551 29 MK599315 Pseudomonas phage PA1C, complete genome 154113-154141 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 DQ517338 Staphylococcus phage 80alpha, complete sequence 37557-37585 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NC_008798 Staphylococcus phage phiETA2, complete genome 37367-37395 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 AY954953 Bacteriophage 85, complete genome 21413-21441 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 AY954952 Bacteriophage 53, complete genome 21305-21333 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 AF513856 Staphylococcus aureus bacteriophage phi 53 phiETA ORF57-like protein, phiETA ORF58-like protein, phiETA ORF59-like protein, phiPVL ORF17-like protein, and peptidoglycan hydrolase genes, complete cds 3625-3653 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NC_014460 Staphylococcus phage SAP-26, complete genome 18827-18855 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NC_007050 Staphylococcus phage 85, complete genome 21413-21441 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 AP008953 Staphylococcus phage phiETA2 DNA, complete genome, strain: TY94 37367-37395 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NC_007049 Staphylococcus phage 53, complete genome 21305-21333 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 HQ127381 Staphylococcus phage TEM126, complete sequence 25830-25858 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NC_009526 Staphylococcus phage 80alpha, complete genome 37557-37585 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 NC_017968 Staphylococcus phage TEM123, complete genome 15704-15732 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 AP014236 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S25-C36, *** SEQUENCING IN PROGRESS *** 8805-8833 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 AP014237 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S45-C87, *** SEQUENCING IN PROGRESS *** 3823-3851 7 0.759
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 MN694673 Marine virus AFVG_250M602, complete genome 28307-28335 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_AP014816 Geminocystis sp. NIES-3708 plasmid pGM01, complete sequence 1031-1059 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NC_013516 Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence 1532-1560 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP027399 Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence 6026-6054 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NC_005250 Vibrio anguillarum 775 plasmid pJM1, complete sequence 46529-46557 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP020532 Vibrio anguillarum strain 425 plasmid pEIB1, complete sequence 64052-64080 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_LK021128 Vibrio anguillarum strain NB10 plasmid p67vangNB10, complete sequence 8954-8982 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NC_022225 Vibrio anguillarum M3 plasmid unnamed, complete sequence 5162-5190 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP023210 Vibrio anguillarum strain ATCC-68554 plasmid p65, complete sequence 9574-9602 7 0.759
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NC_014457 Clostridium phage phiCTP1, complete genome 47255-47283 7 0.759
CP034393_2 2.5|1571524|29|CP034393|PILER-CR 1571524-1571552 29 NZ_CP042168 Burkholderia contaminans strain ZCC plasmid unnamed2, complete sequence 68629-68657 7 0.759
CP034393_2 2.5|1571524|29|CP034393|PILER-CR 1571524-1571552 29 NZ_CP046611 Burkholderia contaminans strain XL73 plasmid unnamed2, complete sequence 10121-10149 7 0.759
CP034393_2 2.5|1571524|29|CP034393|PILER-CR 1571524-1571552 29 MN103543 Pseudomonas phage vB_PaeM_PS119XW, complete genome 154149-154177 7 0.759
CP034393_2 2.5|1571524|29|CP034393|PILER-CR 1571524-1571552 29 MK599315 Pseudomonas phage PA1C, complete genome 154113-154141 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 DQ517338 Staphylococcus phage 80alpha, complete sequence 37557-37585 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NC_008798 Staphylococcus phage phiETA2, complete genome 37367-37395 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 AY954953 Bacteriophage 85, complete genome 21413-21441 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 AY954952 Bacteriophage 53, complete genome 21305-21333 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 AF513856 Staphylococcus aureus bacteriophage phi 53 phiETA ORF57-like protein, phiETA ORF58-like protein, phiETA ORF59-like protein, phiPVL ORF17-like protein, and peptidoglycan hydrolase genes, complete cds 3625-3653 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NC_014460 Staphylococcus phage SAP-26, complete genome 18827-18855 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NC_007050 Staphylococcus phage 85, complete genome 21413-21441 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 AP008953 Staphylococcus phage phiETA2 DNA, complete genome, strain: TY94 37367-37395 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NC_007049 Staphylococcus phage 53, complete genome 21305-21333 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 HQ127381 Staphylococcus phage TEM126, complete sequence 25830-25858 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NC_009526 Staphylococcus phage 80alpha, complete genome 37557-37585 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 NC_017968 Staphylococcus phage TEM123, complete genome 15704-15732 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 AP014236 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S25-C36, *** SEQUENCING IN PROGRESS *** 8805-8833 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 AP014237 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S45-C87, *** SEQUENCING IN PROGRESS *** 3823-3851 7 0.759
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 MN694673 Marine virus AFVG_250M602, complete genome 28307-28335 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_AP014816 Geminocystis sp. NIES-3708 plasmid pGM01, complete sequence 1031-1059 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NC_013516 Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence 1532-1560 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP027399 Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence 6026-6054 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NC_005250 Vibrio anguillarum 775 plasmid pJM1, complete sequence 46529-46557 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP020532 Vibrio anguillarum strain 425 plasmid pEIB1, complete sequence 64052-64080 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_LK021128 Vibrio anguillarum strain NB10 plasmid p67vangNB10, complete sequence 8954-8982 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NC_022225 Vibrio anguillarum M3 plasmid unnamed, complete sequence 5162-5190 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP023210 Vibrio anguillarum strain ATCC-68554 plasmid p65, complete sequence 9574-9602 7 0.759
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NC_014457 Clostridium phage phiCTP1, complete genome 47255-47283 7 0.759
CP034393_2 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT 1571523-1571551 29 MF403008 Agrobacterium phage Atu_ph07, complete genome 361094-361122 8 0.724
CP034393_2 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT 1571655-1571683 29 MG543995 Staphylococcus phage UPMK_1, partial genome 6086-6114 8 0.724
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 67371-67399 8 0.724
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 CP033548 Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-3, complete sequence 13219-13247 8 0.724
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 39199-39227 8 0.724
CP034393_2 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT 1571721-1571749 29 NZ_CP039931 Acinetobacter baumannii strain TG29392 plasmid pTG29392_1, complete sequence 84286-84314 8 0.724
CP034393_2 2.5|1571524|29|CP034393|PILER-CR 1571524-1571552 29 MF403008 Agrobacterium phage Atu_ph07, complete genome 361094-361122 8 0.724
CP034393_2 2.7|1571656|29|CP034393|PILER-CR 1571656-1571684 29 MG543995 Staphylococcus phage UPMK_1, partial genome 6086-6114 8 0.724
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 67371-67399 8 0.724
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 CP033548 Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-3, complete sequence 13219-13247 8 0.724
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 39199-39227 8 0.724
CP034393_2 2.8|1571722|29|CP034393|PILER-CR 1571722-1571750 29 NZ_CP039931 Acinetobacter baumannii strain TG29392 plasmid pTG29392_1, complete sequence 84286-84314 8 0.724
CP034393_1 1.1|1471264|34|CP034393|CRISPRCasFinder 1471264-1471297 34 MH752385 Bacillus phage Ray17, complete genome 8509-8542 10 0.706

1. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gaaacataatttttcataaattgacaaag	CRISPR spacer
gaaacataatttttcataaattgacaaag	Protospacer
*****************************

2. spacer 2.8|1571722|29|CP034393|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gaaacataatttttcataaattgacaaag	CRISPR spacer
gaaacataatttttcataaattgacaaag	Protospacer
*****************************

3. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

agtttataaaaataagcaagatgtagaat	CRISPR spacer
agtttataaaaataagcaagatgtagagt	Protospacer
***************************.*

4. spacer 2.7|1571656|29|CP034393|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

agtttataaaaataagcaagatgtagaat	CRISPR spacer
agtttataaaaataagcaagatgtagagt	Protospacer
***************************.*

5. spacer 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT matches to NC_010815 (Geobacter lovleyi SZ plasmid pGLOV01, complete sequence) position: , mismatch: 5, identity: 0.828

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ctgaatcaacagcagatggaagaactgat	Protospacer
 .* * ***** *****************

6. spacer 2.5|1571524|29|CP034393|PILER-CR matches to NC_010815 (Geobacter lovleyi SZ plasmid pGLOV01, complete sequence) position: , mismatch: 5, identity: 0.828

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ctgaatcaacagcagatggaagaactgat	Protospacer
 .* * ***** *****************

7. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 6, identity: 0.793

agtttataaaaataagcaagatgtagaat----	CRISPR spacer
agtttgtaaaaataagcaatatg----attgtg	Protospacer
*****.************* ***    **    

8. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP022536 (Spiroplasma corruscae strain EC-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gaaacataatttttcataaattgacaaag	CRISPR spacer
gcaacatcatttttcctaaattgactata	Protospacer
* ***** ******* ********* * .

9. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 6, identity: 0.793

agtttataaaaataagcaagatgtagaat----	CRISPR spacer
agtttgtaaaaataagcaatatg----attgtg	Protospacer
*****.************* ***    **    

10. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP022536 (Spiroplasma corruscae strain EC-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gaaacataatttttcataaattgacaaag	CRISPR spacer
gcaacatcatttttcctaaattgactata	Protospacer
* ***** ******* ********* * .

11. spacer 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP042168 (Burkholderia contaminans strain ZCC plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
gtgcccgcacaccagatggaagcactgat	Protospacer
..**    ************** ******

12. spacer 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP046611 (Burkholderia contaminans strain XL73 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
gtgcccgcacaccagatggaagcactgat	Protospacer
..**    ************** ******

13. spacer 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ttgagccaacaacagatggaagaattgat	Protospacer
 .* . ***** ************.****

14. spacer 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ttgagccaacaacagatggaagaattgat	Protospacer
 .* . ***** ************.****

15. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to DQ517338 (Staphylococcus phage 80alpha, complete sequence) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

16. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NC_008798 (Staphylococcus phage phiETA2, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

17. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to AY954953 (Bacteriophage 85, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

18. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to AY954952 (Bacteriophage 53, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

19. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to AF513856 (Staphylococcus aureus bacteriophage phi 53 phiETA ORF57-like protein, phiETA ORF58-like protein, phiETA ORF59-like protein, phiPVL ORF17-like protein, and peptidoglycan hydrolase genes, complete cds) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

20. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NC_014460 (Staphylococcus phage SAP-26, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

21. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NC_007050 (Staphylococcus phage 85, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

22. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to AP008953 (Staphylococcus phage phiETA2 DNA, complete genome, strain: TY94) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

23. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NC_007049 (Staphylococcus phage 53, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

24. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to HQ127381 (Staphylococcus phage TEM126, complete sequence) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

25. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NC_009526 (Staphylococcus phage 80alpha, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

26. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to NC_017968 (Staphylococcus phage TEM123, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

27. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to AP014236 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S25-C36, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
agtttataaaaataaacaagagtcaaagc	Protospacer
***************.*****  .*.*..

28. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to AP014237 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S45-C87, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
agtttataaaaataaacaagagtcaaagc	Protospacer
***************.*****  .*.*..

29. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to MN694673 (Marine virus AFVG_250M602, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tgcttataaaaataatcaagatgtttata	Protospacer
 *.************ ********  *  

30. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_AP014816 (Geminocystis sp. NIES-3708 plasmid pGM01, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
ttttcaaaatttttcaaaaattgacaaaa	Protospacer
    ** ********* ***********.

31. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NC_013516 (Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
cccatataattttttataaattgagaaac	Protospacer
   *.*********.********* *** 

32. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP027399 (Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
cccatataattttttataaattgagaaac	Protospacer
   *.*********.********* *** 

33. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NC_005250 (Vibrio anguillarum 775 plasmid pJM1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

34. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP020532 (Vibrio anguillarum strain 425 plasmid pEIB1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

35. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_LK021128 (Vibrio anguillarum strain NB10 plasmid p67vangNB10, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

36. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NC_022225 (Vibrio anguillarum M3 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

37. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP023210 (Vibrio anguillarum strain ATCC-68554 plasmid p65, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

38. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NC_014457 (Clostridium phage phiCTP1, complete genome) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
ttataataatttttcataaaatcacaaac	Protospacer
  *  *************** * ***** 

39. spacer 2.5|1571524|29|CP034393|PILER-CR matches to NZ_CP042168 (Burkholderia contaminans strain ZCC plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
gtgcccgcacaccagatggaagcactgat	Protospacer
..**    ************** ******

40. spacer 2.5|1571524|29|CP034393|PILER-CR matches to NZ_CP046611 (Burkholderia contaminans strain XL73 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
gtgcccgcacaccagatggaagcactgat	Protospacer
..**    ************** ******

41. spacer 2.5|1571524|29|CP034393|PILER-CR matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ttgagccaacaacagatggaagaattgat	Protospacer
 .* . ***** ************.****

42. spacer 2.5|1571524|29|CP034393|PILER-CR matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 7, identity: 0.759

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ttgagccaacaacagatggaagaattgat	Protospacer
 .* . ***** ************.****

43. spacer 2.7|1571656|29|CP034393|PILER-CR matches to DQ517338 (Staphylococcus phage 80alpha, complete sequence) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

44. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NC_008798 (Staphylococcus phage phiETA2, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

45. spacer 2.7|1571656|29|CP034393|PILER-CR matches to AY954953 (Bacteriophage 85, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

46. spacer 2.7|1571656|29|CP034393|PILER-CR matches to AY954952 (Bacteriophage 53, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

47. spacer 2.7|1571656|29|CP034393|PILER-CR matches to AF513856 (Staphylococcus aureus bacteriophage phi 53 phiETA ORF57-like protein, phiETA ORF58-like protein, phiETA ORF59-like protein, phiPVL ORF17-like protein, and peptidoglycan hydrolase genes, complete cds) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

48. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NC_014460 (Staphylococcus phage SAP-26, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

49. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NC_007050 (Staphylococcus phage 85, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

50. spacer 2.7|1571656|29|CP034393|PILER-CR matches to AP008953 (Staphylococcus phage phiETA2 DNA, complete genome, strain: TY94) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

51. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NC_007049 (Staphylococcus phage 53, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

52. spacer 2.7|1571656|29|CP034393|PILER-CR matches to HQ127381 (Staphylococcus phage TEM126, complete sequence) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

53. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NC_009526 (Staphylococcus phage 80alpha, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

54. spacer 2.7|1571656|29|CP034393|PILER-CR matches to NC_017968 (Staphylococcus phage TEM123, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tagaaagaaatataagcaagatgtagaat	Protospacer
 .   * *** ******************

55. spacer 2.7|1571656|29|CP034393|PILER-CR matches to AP014236 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S25-C36, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
agtttataaaaataaacaagagtcaaagc	Protospacer
***************.*****  .*.*..

56. spacer 2.7|1571656|29|CP034393|PILER-CR matches to AP014237 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S45-C87, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
agtttataaaaataaacaagagtcaaagc	Protospacer
***************.*****  .*.*..

57. spacer 2.7|1571656|29|CP034393|PILER-CR matches to MN694673 (Marine virus AFVG_250M602, complete genome) position: , mismatch: 7, identity: 0.759

agtttataaaaataagcaagatgtagaat	CRISPR spacer
tgcttataaaaataatcaagatgtttata	Protospacer
 *.************ ********  *  

58. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_AP014816 (Geminocystis sp. NIES-3708 plasmid pGM01, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
ttttcaaaatttttcaaaaattgacaaaa	Protospacer
    ** ********* ***********.

59. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NC_013516 (Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
cccatataattttttataaattgagaaac	Protospacer
   *.*********.********* *** 

60. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP027399 (Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
cccatataattttttataaattgagaaac	Protospacer
   *.*********.********* *** 

61. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NC_005250 (Vibrio anguillarum 775 plasmid pJM1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

62. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP020532 (Vibrio anguillarum strain 425 plasmid pEIB1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

63. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_LK021128 (Vibrio anguillarum strain NB10 plasmid p67vangNB10, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

64. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NC_022225 (Vibrio anguillarum M3 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

65. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP023210 (Vibrio anguillarum strain ATCC-68554 plasmid p65, complete sequence) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
tgagaataatttttcattaattgaaaaac	Protospacer
 .*. ************ ****** *** 

66. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NC_014457 (Clostridium phage phiCTP1, complete genome) position: , mismatch: 7, identity: 0.759

gaaacataatttttcataaattgacaaag	CRISPR spacer
ttataataatttttcataaaatcacaaac	Protospacer
  *  *************** * ***** 

67. spacer 2.1|1571523|29|CP034393|CRISPRCasFinder,CRT matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 8, identity: 0.724

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ccgcagcaacaccagatgcacgaaggcca	Protospacer
 ***************** * ***     

68. spacer 2.3|1571655|29|CP034393|CRISPRCasFinder,CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 8, identity: 0.724

agtttataaaaataagcaagatgtagaat	CRISPR spacer
cattaatgaaaataagcaagatgtattta	Protospacer
 .** **.*****************    

69. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
aaaacataacttttcataaattttttaca	Protospacer
.********.************  . * .

70. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to CP033548 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-3, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
agttaataatttttcagaaattgaaaaat	Protospacer
..   *********** ******* *** 

71. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
aaaacataacttttcataaattttttaca	Protospacer
.********.************  . * .

72. spacer 2.4|1571721|29|CP034393|CRISPRCasFinder,CRT matches to NZ_CP039931 (Acinetobacter baumannii strain TG29392 plasmid pTG29392_1, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
taagcctaatttttcataaattgaatttt	Protospacer
 **.* ******************     

73. spacer 2.5|1571524|29|CP034393|PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 8, identity: 0.724

acgcagcaacaccagatggaagaactgat	CRISPR spacer
ccgcagcaacaccagatgcacgaaggcca	Protospacer
 ***************** * ***     

74. spacer 2.7|1571656|29|CP034393|PILER-CR matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 8, identity: 0.724

agtttataaaaataagcaagatgtagaat	CRISPR spacer
cattaatgaaaataagcaagatgtattta	Protospacer
 .** **.*****************    

75. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
aaaacataacttttcataaattttttaca	Protospacer
.********.************  . * .

76. spacer 2.8|1571722|29|CP034393|PILER-CR matches to CP033548 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-3, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
agttaataatttttcagaaattgaaaaat	Protospacer
..   *********** ******* *** 

77. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
aaaacataacttttcataaattttttaca	Protospacer
.********.************  . * .

78. spacer 2.8|1571722|29|CP034393|PILER-CR matches to NZ_CP039931 (Acinetobacter baumannii strain TG29392 plasmid pTG29392_1, complete sequence) position: , mismatch: 8, identity: 0.724

gaaacataatttttcataaattgacaaag	CRISPR spacer
taagcctaatttttcataaattgaatttt	Protospacer
 **.* ******************     

79. spacer 1.1|1471264|34|CP034393|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 659981 : 759654 105 Campylobacter_phage(41.46%) plate,bacteriocin,tail,tRNA,integrase,transposase attL 658496:658514|attR 736867:736885
DBSCAN-SWA_2 1165973 : 1178036 12 Catovirus(20.0%) NA NA
DBSCAN-SWA_3 1410159 : 1462401 68 Campylobacter_phage(54.55%) plate,bacteriocin,tail,tRNA,integrase attL 1408276:1408292|attR 1433180:1433196
DBSCAN-SWA_4 1480195 : 1492447 11 Bodo_saltans_virus(30.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage