CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034444	Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 chromosome, complete genome	4 crisprs	csa3,WYL,cas3,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034444_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034444_1

492822-492923

Orphan

Consensus_repeat	Method
GGCGGCATGGACTTCTAAGAAGTCC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP034444_1

>merge|CP034444|1|492822-492923|CRISPRCasFinder
GGCGGCATGGACTTCTAAGAAGTCCATAAAGCACGCCCATCAACTAACATTGCTCAAGCCCGCAAGCGGGCTTGAGTGGCGGCATGGACTTCTAAGAAGTCC

>CP034444|1|1|492822-492923|CRISPRCasFinder
GGCGGCATGGACTTCTAAGAAGTCC	ATAAAGCACGCCCATCAACTAACATTGCTCAAGCCCGCAAGCGGGCTTGAGT
GGCGGCATGGACTTCTAAGAAGTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP034444.1\|AZO70164.1\|489800_490601_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
CP034444.1\|AZO70160.1\|485430_486732_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|130740
CP034444.1\|AZO70157.1\|482872_483082_+\|hypothetical-protein	unknown	unknown	unknown
CP034444.1\|AZO70163.1\|488876_489728_-\|hypothetical-protein	unknown	unknown	unknown
CP034444.1\|AZO70158.1\|483078_484014_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224759
CP034444.1\|AZO70168.1\|493725_494151_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
CP034444.1\|AZO70170.1\|495364_495976_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP034444.1\|AZO70161.1\|486746_487982_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
CP034444.1\|AZO75696.1\|497214_497601_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
CP034444.1\|AZO70159.1\|484300_485434_-\|DSD1-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143489
CP034444.1\|AZO70165.1\|490827_491124_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP034444.1\|AZO70169.1\|494139_495363_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
CP034444.1\|AZO70174.1\|498993_499749_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187639
CP034444.1\|AZO70162.1\|488054_488681_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380058
CP034444.1\|AZO70156.1\|481856_482810_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
CP034444.1\|AZO70167.1\|493152_493668_-\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|376823
CP034444.1\|AZO70171.1\|496074_497043_+\|hypothetical-protein	unknown	unknown	unknown
CP034444.1\|AZO70172.1\|497806_498586_-\|ATPase	unknown	unknown	gnl\|CDD\|176856
CP034444.1\|AZO70175.1\|499864_500524_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198303
CP034444.1\|AZO70173.1\|498585_498906_-\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
CP034444.1\|AZO70164.1\|489800_490601_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.48423e-05
CP034444.1\|AZO70160.1\|485430_486732_-\|FAD-binding-protein	gnl\|CDD\|130740	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.	0
CP034444.1\|AZO70158.1\|483078_484014_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	4.27697e-15
CP034444.1\|AZO70168.1\|493725_494151_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	7.62009e-18
CP034444.1\|AZO70170.1\|495364_495976_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.36074e-39
CP034444.1\|AZO70161.1\|486746_487982_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.44184e-10
CP034444.1\|AZO75696.1\|497214_497601_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.89237e-12
CP034444.1\|AZO70159.1\|484300_485434_-\|DSD1-family-PLP-dependent-enzyme	gnl\|CDD\|143489	cd06814, PLPDE_III_DSD_D-TA_like_3, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible members of this family also form dimers in solution.	2.22604e-164
CP034444.1\|AZO70165.1\|490827_491124_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.3165e-55
CP034444.1\|AZO70169.1\|494139_495363_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	2.82711e-37
CP034444.1\|AZO70174.1\|498993_499749_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187639	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR. CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.6502e-100
CP034444.1\|AZO70162.1\|488054_488681_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380058	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present the TetR Transcriptional Repressor present in sco1712 proteins from Streptomyces coelicolo which act as a regulator of antibiotic production.	1.64299e-23
CP034444.1\|AZO70156.1\|481856_482810_+\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	6.9573e-28
CP034444.1\|AZO70167.1\|493152_493668_-\|OsmC-family-peroxiredoxin	gnl\|CDD\|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	3.6546e-14
CP034444.1\|AZO70172.1\|497806_498586_-\|ATPase	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	5.9068e-37
CP034444.1\|AZO70175.1\|499864_500524_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	7.08568e-55
CP034444.1\|AZO70173.1\|498585_498906_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	6.22024e-18

>CP034444.1|AZO70165.1|490827_491124_+|co-chaperone-GroES
MAKSKFRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLVPLDVKAGDRVLFGKWSGTEVKLNGEDLLIMKESDIMGIIG
>CP034444.1|AZO70164.1|489800_490601_+|methyltransferase-domain-containing-protein
MTEHWNAIRKHWQLLGSPLRPPAQVVEAYERELELSQSHVVMLGVTPELAGLGATMTAVDESADMIAGIWPGDTDTRQAVRGDWFELPFPGASIDALIGDGCLSVIGGTEARRALFSAVGRVLKADGRAGIRLYASPGTPDDAKDVRALALSGGVSTFHELKWRVAMTATGDAPDHIIPVSRILEQFEALFPDRAELSARTGWELPVIGTIDVYRNSPAIYSFAPVNALAEEAEAYFGDVGIASTGTYGLAERCPLLVLRSPRRRE
>CP034444.1|AZO70163.1|488876_489728_-|hypothetical-protein
MARIAVITHEYDRFQSRRGLLLRRDSPYMLFDLLEELKRRGHSVRILRGTSAKPAADIAVLHLDATVTPLDYVDYARRFPFCLNLGAADISKRRISGAAIGRDDHWHGPVIVKSSLNHWGTPEQQLNNRARRAGRPEPFPGVEPFDSYEIHASLADVPIEVFGRQDLVVEKFIPEPEPDGFGARFWLFCGERERCTRHVSPQPLVKGDDTIRREAVSVPDELRALRRELGFDYGKFDFVMHEGRAVLLDANKTPGRARNLSAFIAAGNANLADGFEGLIHQVT
>CP034444.1|AZO70162.1|488054_488681_+|TetR/AcrR-family-transcriptional-regulator
MTEARRTATEPRRRPKQERSRERIDAILATTMRLIGEKGIDAVTMKEVGALAGGPIATVYHYFPSKSAILAMLYERFSEESRARFGAIMADIRGLNDVTAAADRLLDDYYARVAADPAIQDLQNAIQADKALQHLDIAETRHQAKMFCDHVDRLIEPENREAFGRVVFLIFQLAGGVVRLALTQDEAEGRRTIEDYRSIIHAQLRLFL
>CP034444.1|AZO70161.1|486746_487982_-|MFS-transporter
MLTTCQFFDRAAREERLVTVTDAGRAEEGDWLVGNPTGLQLVSALWIGSVGVLILGLQPVLLGALYNEGHVTGDQLALVATAEMIAIAIGSAIVAMLLPARNMRWKSAVLLVVLALANFWTAFSESPNALIGARILAGLAEGGLVAVATELIARSRRAERIGGYFVTLQTLAQCALALLLALYAVPVAGSAGGFVVLGVVCLLSLAVAWTVPDDYADLPKEEHLSNVLTAPAITALLSIFCYSIFFGAVWAFLEPLGAQFGIDGSTVGLMVSASLAAQVVGAMTATAFEARIDYRLAITVIGTIAVLCSLLLASGPGLSIFWTVALVMGFILLFIVPYQIRLAITADETRNAVLLVPAAQLFGLAIGPIAASLLIDGENFRPVPEFAAGSALASVALLGVFMLVARRRLTS
>CP034444.1|AZO70160.1|485430_486732_-|FAD-binding-protein
MTNFWSNWSGLVKAAPKLIATPADADDLADLVRSAPGPLRVAGAGHSFTPLVQSDGTIVSLEKIEGLVSHDAATNRAKVRAGTRLGALMHILEGIGQGLPNMGDIDRQAIGGALGTATHGSGPALGAYHTQLETVQFVDGQGKLREYDRARDQDMIRATGVALGAFGVLTEVTMNNIATYRLRRRKWALPIGDMLRDFETMMAAHRSAEFYYIPFSGYAQFIASDLSDAQPTPRPTEDDEAGLATLRKLRTALRRLPSLRRALIKGAVKKVPAEDYVQDWLNVYVSDRQTRFNEMEYHLPYEEGPKALTEIIALTEKHFPEVYFPMEVRSVAPDEFWLSPFHKRLTCSIAIHHDAASDPLPFMRAAEPIFRKYGGRPHWGKMHSLKAADFKKLYPRWDDAMAVRRDIDPENRFVSPYMAGLFGIEPGPFGIRQ
>CP034444.1|AZO70159.1|484300_485434_-|DSD1-family-PLP-dependent-enzyme
MSAYFAELSKALRQAGIFQPALVLDRDRLDRNIALVKERLAPGLAVRLVDKSLASMPLLQHIAGALGSSRFMTFHPPMTQAVLDAFPEADLLYGKPMPVGAARGALTKGGAGWSRVCWLIDTAERLAEYSALAAELGTELRFAFEVDVGLHRGGFVNPAEIKALTIPKRLRCEGIMAYEAHAPEIPGLFGGAEKALKQASAKAAEFVAVLGADQRRILNIGGSKTALLHGGAAANEISIGSAFVLPKDFDTPGLHGFHPAAFIATPILKAIDPVLPGPAAVSGTLQALGLFPRKGCYLYGGKWMAEPVFPEGMKPNGLIGLSSNQQFMGLPAGTEVKPGDYAFLRPTQSEAVLQHFGSIAVFSAGRIMEFWPALPMG
>CP034444.1|AZO70158.1|483078_484014_-|GNAT-family-N-acetyltransferase
MTIHDHPGKERIDAVRAFNRFYTRQIGVLDEGWLKSTFSLTEARVLYELAHRDGLVASDLVRDLGLDPGYVSRLLKKFEERGLVERAASEADARRSPIALTPAGRDAFAPLNQDSHDQVRALLDRLAPADQERLVKAMRTVQDLLGDKPEPKVPYILRPLQVGDIGWVTRRQGMLYAEEYGWDETYEALVAEILGEFVKNFVPQWERSWIAEREGEVVGSVFVVRKSPKVAKLRLLYVEPSARGLGIGKRLVDECIAFARAKGYKTLTLWTNDILGSARRIYQAAGFKLVEEERHHSFGKDLVGQTWDLEL
>CP034444.1|AZO70157.1|482872_483082_+|hypothetical-protein
MSETSRAKPPRGSVRANCATGPLWEKVSPKATDEGCSSGVRRWRSLEHPSSVSALRADPPSPTRGEGKG
>CP034444.1|AZO70156.1|481856_482810_+|IS5-family-transposase
MAVKRTGQLSLAEAFLGQKLAGGSSPLDRLSGLVKWYRFEKLLNPLRDGGPGRAAWPPLVLFKALLLQSLYGLSDRELEEALGDRLSFRRFVGLGLEESIPDHSVLSRFRNLLVGEGLMERLFGELDRQLEKVGVILKRGTMLDATLIDAVSAPPTAERPSKDADARPVRRGKGGFTFGYKAHVGVDEGSGLIRTVITTPANVNDTVMADHLIRGDEKTVWADAAYDTHARRARLKAEGRKPRIARRPNKHHSLPERLKRYNRLIARRRAAVETTFATLKNRMKLTTIRYVGLAKAAAQVTLAAIAFNMRRWAAITG
>CP034444.1|AZO70167.1|493152_493668_-|OsmC-family-peroxiredoxin
MDIATFRATQEPIKDLYRRDARAALLTLKAKGSADDSHVTCKVETGRGLALAGVHPKAGGSGQELCSGDMLLEALIACAGVSMRAAAAVLEIPIKSAEISAEGDVDLRGTLGVTEGVPVGFEEIRLRFDIDTDAPQNRLTQLMELTDRYCVIFQTIQRSPRTFVKLNRVAR
>CP034444.1|AZO70168.1|493725_494151_-|GFA-family-protein
MTVHKGGCFCGAVEIEVHGSAEAMGYCHCSSCRSWSASPVNAFTLWKPENVKVTRGAEFLSGFEKSAMSDRRFCTKCGGHLMTDHPPLGLVDVYAATIPTLEFAPGVHVNYAETVLPMKDGLPKLKDFPAELGGSGVSVPE
>CP034444.1|AZO70169.1|494139_495363_+|AraC-family-transcriptional-regulator
MYRHDFHPSLSSTALERPTKDAAQHQCGFKASGNERNDAASASLDSASGTRMGCRAGLPRNLLMAGDGMAGDALSDLLKTVRLTGATFFDIAAQDPWAVCSPSPSSILPRILPGADHLISYHVLTEGRCFARIIGKEAIPVEAGEVVVFTNSDPHIMSSTPDLGADPPTADVLEIAAASQTPFPINYVKDGAMSARLVCGYLACDALPFNPLLEALPPFIKAGDVKGDSGWLGQFIKLAVSEVAEKRAGSETVLTKLSELMFVDVLRRYVESLPPQHTGWLTGLRDPHLSKALALIHDRPAHNWTLEALAKESALSRTVLAERFTRLVGMPPMHYLAKWRMQIASELLSAGNSNVASIAAEIGYESEAAFSRAFKKMIGVPPSAWRLGVRPAPSSGSGEASETKGTD
>CP034444.1|AZO70170.1|495364_495976_-|LysE-family-translocator
MSIEFLLTSLIIVASPGTGVLYTLSAGLSRGARASIIAAFACTLGIIPHMAAAVTGLAAVLHTSAVAFETLKYLGVAYLLYMAWNTLKERGGLSIDENVAPRSTGKVITSGVLVNILNPKLSIFFFAFLPQFVSTTEPHAFAKMLELSGVFMLMTFVVFAVYGVFAASVRSHIVSRPRVLTWMRRSFAAAFVMLGAKLALADR
>CP034444.1|AZO70171.1|496074_497043_+|hypothetical-protein
MASHSQQADLETSMHSSEWLKFWRKRRPDDVSPHIMLANLSGDANKRLVALRSAMRAFPGVARIGDGSWRLGRETELPIRLHAIRAIFVTWSEFVFVGVRSDARREAFDALAVPLAKLDEGLPDFYNRNIISSDYAVASWQDATEAARRGVSLVEAIDALAFRDLPFDQGRSYRDFLDTLSIYGPTGRDDMARWRAAQRAAIGADCALLQEQEMTQAELALAPLWPDPASAALETNLTMSLSAHNMRDLGTHVEKWLRERKDGSLVLNMGVEQAQERVVRIANLSPSFWGIRPAADTLYALDYCLHGDLGNPNWGSETQRRP
>CP034444.1|AZO75696.1|497214_497601_-|YkgJ-family-cysteine-cluster-protein
MALPYDHSFLALTDASTAFDCQSCGACCAYSADWPRFSTEEDAELDRIPEALVAADQSGMRCEGGRCSALSGEVGKGTACAIYEIRPHVCRACMPGGDDCLMARAAYGLPVELPISPLTLRGVEEWSA
>CP034444.1|AZO70172.1|497806_498586_-|ATPase
MASNDRPRAIADVSAGTILATVTVAVPPERVFRAITAEDQIPLWWGADEMYRTTKHTADVRPGGAWRSEGRGADGQDFHVGGEYLEVEPPRRLVMTWIAPWDGDHVTTVTYTLEAVENGTRLTLRHDGFGARQDSCRDHGSGWERVLGWLGDFLAKEAGSKPPSVFHCRLIPPRPDFAFTLTEEERALMNAHADFLRDQLRAGTMMIAGPVADPAGPWGLLILRVGSEAEARAVTDSDPVARSGRGFRYEILPMMSTIM
>CP034444.1|AZO70173.1|498585_498906_-|ArsR-family-transcriptional-regulator
MPQAEQDRSVFRAIADPTRRAILDRLRQGPAPVNELASAFSQTRPAISKHLRILRELNVVSEQRRGRERVYRLEPAELKDVADWILPYRDFWQQSLGNLKSYLEDE
>CP034444.1|AZO70174.1|498993_499749_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTSANSSLSDKVALVTGASSGIGEATAAALAAAGAKVAVAARRIDRLATLVSRIEKAGGSALAIEADIARGGDITAMVDKTVSEWGRLDILVNNAGVMLLAPAAEADLDDWRRMIELNLIGLMGTTKAALPHLKASKGHVVNVSSVAGRVANPGASGYAATKFGVVAFSESLRREVYADKVRVIVIEPGLVRTELGDHITNEEFKAGLEHRLATMEALTAEDIANAILYAVSQPPRVNVNEILIRPTDQER
>CP034444.1|AZO70175.1|499864_500524_-|glutathione-S-transferase-family-protein
MGEFTLYVGNKCFSSWSLRPWVAMKHLEIPFDEGFVRLRTPETAANLAKVSPTGLVPVLDHNGRIVWETLAILEYLADLFPEKMLWPQDLGARALARSVATEMHSGFREVRYGWPMNLRRPKAYKPLDAEGETQRARIEAIWRQCRERCGKDGPFLFGHFTAADAMYAPIVTRFDTYGGALAPVTRAYVDAVLATPAMRYWYAQAAKEPWPEPGPHEQD

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Crispr_ID: CP034444_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034444_2

1951916-1952070

Orphan

Consensus_repeat	Method
TGTTTTGACGCAATTCCGGACGGAAAACCGTTTCACACTTTTCTTGGAATTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034444_2

>merge|CP034444|2|1951916-1952070|CRISPRCasFinder
TGTTTTGACGCAATTCCGGACGGAAAACCGTTTCACACTTTTCTTGGAATTGCTCAGAGCGGTCCACCGTTTCACGGAAACGGCAAACCGCTCTATCTCCTTGTTTTGACGCAATTCCGGACGGAAAACCGTTTCACACTTTTCCTGGAATTGCT

>CP034444|2|2|1951916-1952070|CRISPRCasFinder
TGTTTTGACGCAATTCCGGACGGAAAACCGTTTCACACTTTTCTTGGAATTGCT	CAGAGCGGTCCACCGTTTCACGGAAACGGCAAACCGCTCTATCTCCT
TGTTTTGACGCAATTCCGGACGGAAAACCGTTTCACACTTTTCCTGGAATTGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP034444.1\|AZO71433.1\|1961839_1963021_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
CP034444.1\|AZO71436.1\|1965378_1966203_+\|hypothetical-protein	unknown	unknown	unknown
CP034444.1\|AZO71421.1\|1945596_1946748_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|227017
CP034444.1\|AZO71419.1\|1943139_1944354_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227017
CP034444.1\|AZO71423.1\|1947622_1950337_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP034444.1\|AZO71429.1\|1955563_1956904_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225025
CP034444.1\|AZO71430.1\|1957051_1958947_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
CP034444.1\|AZO71418.1\|1935955_1937818_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP034444.1\|AZO71435.1\|1963763_1965179_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
CP034444.1\|AZO71432.1\|1960844_1961843_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP034444.1\|AZO75804.1\|1937817_1939710_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP034444.1\|AZO71422.1\|1946785_1947457_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	unknown
CP034444.1\|AZO71424.1\|1950525_1950975_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
CP034444.1\|AZO71427.1\|1952821_1953910_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
CP034444.1\|AZO71425.1\|1951050_1951905_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293801
CP034444.1\|AZO71431.1\|1958943_1960842_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173865
CP034444.1\|AZO71428.1\|1953985_1955164_+\|DUF3095-domain-containing-protein	unknown	unknown	gnl\|CDD\|371453
CP034444.1\|AZO71434.1\|1963267_1963747_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372258
CP034444.1\|AZO71420.1\|1944355_1945600_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	unknown	unknown	gnl\|CDD\|340837
CP034444.1\|AZO75805.1\|1940508_1942734_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740

Protein	Function_ID	Function_description	E-value
CP034444.1\|AZO71433.1\|1961839_1963021_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.50974e-83
CP034444.1\|AZO71421.1\|1945596_1946748_+\|glycosyl-transferase	gnl\|CDD\|227017	COG4671, COG4671, Predicted glycosyl transferase [General function prediction only].	8.65e-171
CP034444.1\|AZO71419.1\|1943139_1944354_+\|hypothetical-protein	gnl\|CDD\|227017	COG4671, COG4671, Predicted glycosyl transferase [General function prediction only].	0
CP034444.1\|AZO71423.1\|1947622_1950337_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.92259e-38
CP034444.1\|AZO71429.1\|1955563_1956904_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|225025	COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms].	9.21852e-37
CP034444.1\|AZO71430.1\|1957051_1958947_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
CP034444.1\|AZO71418.1\|1935955_1937818_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.04312e-167
CP034444.1\|AZO71435.1\|1963763_1965179_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	3.37854e-40
CP034444.1\|AZO71432.1\|1960844_1961843_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.45803e-98
CP034444.1\|AZO75804.1\|1937817_1939710_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.97856e-177
CP034444.1\|AZO71424.1\|1950525_1950975_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	4.78924e-29
CP034444.1\|AZO71427.1\|1952821_1953910_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.9521e-37
CP034444.1\|AZO71425.1\|1951050_1951905_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293801	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain. Myxococcus xanthus Tar3 may function as an ammonium regulator/effector protein involved in biosynthesis of the antibiotic TA. Some are members of this subgroup are annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	2.59318e-100
CP034444.1\|AZO71431.1\|1958943_1960842_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173865	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.81202e-164
CP034444.1\|AZO71428.1\|1953985_1955164_+\|DUF3095-domain-containing-protein	gnl\|CDD\|371453	pfam11294, DUF3095, Protein of unknown function (DUF3095). Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.	0
CP034444.1\|AZO71434.1\|1963267_1963747_+\|hypothetical-protein	gnl\|CDD\|372258	pfam12692, Methyltransf_17, S-adenosyl-L-methionine methyltransferase. This domain is found in bacterial proteins. The structure of the proteins in this family suggest that they function as a methyltransferase.	1.67036e-88
CP034444.1\|AZO71420.1\|1944355_1945600_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	3.14178e-40
CP034444.1\|AZO75805.1\|1940508_1942734_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.02635e-44

>CP034444.1|AZO71425.1|1951050_1951905_+|MBL-fold-metallo-hydrolase
MDDDVFLVRFWGVRGSISVSGPEFSRYGGNTICIEMRCGKHTLLFDAGSGLRPAGHALRASGVTDFDLFFTHCHYDHIIGFPAFTPIYDRSVKVTLWSGHLAGRMTTQQMIDEFMRPPWFPVRLDICKARLDCRDFVSGDVLRPREGVVVRTGSLIHPGGCVGYRVEWGGRVVAVITDTEHEPDLLDQTVLGLIEDADLVIYDCTYTEEEMERRRGNGHSTWQEGVKLCETAGARGLALFHHDPSRTDDQLDEIEKMAKDRFAGAFAARDGQTLEFPVSLRKKG
>CP034444.1|AZO71424.1|1950525_1950975_+|cyclic-nucleotide-binding-domain-containing-protein
MLLKDEVGMLQRVPLFSGIEPAKLKLLAFTSDRVSYSAGEILFRQGDEGDAAYVILSGKADILVDSDSGPIKVAELLPNSIVGEIAILCNSSRTASVRAASPLEALRIRKDHLLRLMREFPEMTIEMVRVLADRLSHTTADLIDARSAK
>CP034444.1|AZO71423.1|1947622_1950337_+|ABC-transporter-ATP-binding-protein
MEPSLARYIWRHTRKQQIWILMIVLLSMIPYFMSFDLPKLIVNGPIQGRGFEQPGSTQPFMRLHYDLPFIGEVLLFSGFQLGRKATLLALSIVFLLLVVINGLFKLYINTYKGRLGERMLRRIRFDLVDRVLRFPPIYFKRVKSAEVATMVKDEVEPLGGFIGDAFLQPVLLGGQALTAMLFIMVQNVWLGMIAVVIVVIQIVLIPRMRRRLLVLGRQRQLTARALSGRVGEIVDGIGAVHVHDTSNYERADIASRLGLIFKIRFDLYQWKFMVKFLNNFLAQLTPFLFYMIGGYLVIGGRLDVGQLVAVIGAYKDLPGPMKELIDWDQDRQDVQVKYQQVVEQFTVEGLIAPGIAALTVDNPGPMTDPLSAIGLSIADDGGAMLLDRISLQVKPGETVALVSTATGGAEALAEAFARLSWPSSGKVTSGADDLLELPEAVTGRRMSYASSDVFLFQASLRDNLLYGLKHAPLTSVPYDGAAADQQRWNIEEARRSGNPDLDVHSDWVDYASAGATGPHDLFEAVRQVLDAVLLSRDILDLGLRSSADLTRHTKLAGRIVELRAALRTRLEKEGLSGLVVPFEPGAYNKEAAIGQNLLFGAAAGPELADRALAANPYFASVLKQAGLDRTLYEMGMDIAEQAIELFADLPPDHPFFQQLAFMSAEEIPAYETLLQRLKNRPYETVSENDRAMIVTLSFAYIEPRHRFGLLSDELMNKIVAARNQFYEDLPPELQNAVERYDPAKYIAAATVMDNVLFGRLGSNHPDAPDRIRSIVYDILDELGLYAELLDVGLDFNVGAGGRRLTGGQRQKLDVARALLKRPDFLILNRPLSALDQRVQDKVLQNVLEEARRDGRSPAIVWVVTNPAMAMMFDRVIVFDSGRLVEDGPHETLLAGNSTFKELLS
>CP034444.1|AZO71422.1|1946785_1947457_-|class-I-SAM-dependent-methyltransferase
MDVTQPRNAGLDGHDQALDLTRGIAAYVNHPLVAGLARVIAKHPQADIANAFNHKQVACKMWALDKLFESCGGRFGRIWVLGGWYGVLPAMLFNDARFEVAAVDSIDIDPEVAPVALTLNRDAGDRFRALTADMYALDYAAGRSDLIVNTSCEHIADLSAWLALLPRGTTVLLQSNDYFSEPTHINCVASLAAFEAMAALREIRFSGELPTKNYTRFMLIGTV
>CP034444.1|AZO71421.1|1945596_1946748_+|glycosyl-transferase
MKRLRAFLYVQHLLGIGHLARSSRIAAALVDDGFDVTVVTGGAPIAGFPGPGVKSVALPPATSGDEGFSGLVDLQGKPIDDDFRKRRSEMLLDAFRDCRPDIVIVEAFPFGRRQMRFELLPLIEAIEATSPRPLLATSVRDILQERVKPGRNEETVELVNRHFDLVMVHGDPAFATIDKTFPLAGAIRAEVAYTGLVAAPPPPAASERFDILVSVGGGAAGKSLVSSAIAAAGNAGNGWKWCLITGPNLPKDEFDAIARDAPPGLSIFRFREDFAGLLTGARLSVSQAGYNTVCDVLRAGCRSLLVPFAAGGETEQTVRALMLEELGLATVLKEKHLTPEALAQAIEQALARPTPSAHRLDLEGAHHSAQILRERYRTWSQKS
>CP034444.1|AZO71420.1|1944355_1945600_+|colanic-acid-biosynthesis-glycosyltransferase-WcaL
MQRRKIVVVLKGYPRLSETFIAQELLGLERAGFDLILVALRRPTDAKRHPVHDEIKAPVHYLPEYLHKEPLRVIRSLFAHLPRPGFWRALGSLAADIPRDFTRNRVRRFGQALVLAAEWPEGAGWLHAHFAHTPASVTLYVSLLRSLPWSCSAHAKDIWTSADWDLAGKLSSARWTVTCTKTGFDRLKELANGNSSVHLSYHGLDLDRFGSFGEARKQHDGSAPDEPVIVLSVGRAVEKKGYDTLLEALALLPGDLAWRFEHIGGGEELERLKALARKLGLDGRVSWKGALAQEDVLEHYRRADIFALACRITANGDRDGLPNVLVEAASQRLACVSTDISGVPELLSPDETGLLVPTENPIALAQALERLIRDPVLRARLGDAAERRVRGNFDHLTSIGQLKELFEREWRVAD
>CP034444.1|AZO71419.1|1943139_1944354_+|hypothetical-protein
MTHHVQDARILMYSHDTFGLGHLQRCRTIAHSLVEDFHGLQVLIISGAPIAGAFDYRARVDFVKIPSVIKLRNGEYTSLEKDIDLHETLRMRQSIIRHTAETFRPDIFIVDKEPLGLRGEIEDTLSYLKTRGTTLVLGLREVMDAPHLLEAEWARRDVMRKIGLFYDKIWAYGPPDFYDPLTGLDVPPGVRAKMRFVGFLQRSLQRNELPGHRPEGDYILVTTGGGGDGAELIHDVIDAYQQDPQLQHRALIVLGPYMPARKRNKLLKKGAKIPYIKIIEFDNRMEDLIAGAKAVVAMGGYNTYCEILSFDKPALIVPRVEPREEQLIRARRAAELGLVEMLLPEEAKDSQRFADALAALPDRPRPSQSNPHLTLEGLPHISEIVAELFDRRAGHHLSVIEGMN
>CP034444.1|AZO75805.1|1940508_1942734_+|mechanosensitive-ion-channel-family-protein
MFVVIATSLVLGIALLLAGPAQAQAPATVPPERVKQLFELLDDPSVKAWVAEQRHQDARPAAAPAEAGASPAGASSDAVATPGQMNTMASSTLDRIKHHIERIVRTLPLLPGQFARVRAETMDDMSSKGSAGVFMLITMFIAAGVALTWATYRLTRPFRLWIIAQPKETPIGRAKKIGGRTLYSSLLIVSFALGSAGAFMLFDWPMLIREIVLTFLIAAVVTAAVRMYVAAMLVPSFMKVENAVEVRALPVTNETADHWFYWLPRIVGVFAFFAAAFTLLPGLGIDRDGMLVLSTGADFVLLLLLLLAIWRRPRTQRDDAQPSGHTGATWLLTAYFVVLFLLRIAGLNILFWFTFAAFFLPLTVVLTQRGVNFVLRPGSEDAGRPTIPAVTIAVIDRAVRMVLILTAAYFLARVWGLDMQSMRDSDTTTTLILRGLINVMVIALAADFGWSIIKALIERKLGIETPHAVTDDEEAPILDPQQARLRTLLPIIQNILLAVIVVMAVLMMLASVGIEIGPLIAGAGVVGVAVGFGAQTIVKDVISGVFFLLDDAFRVGEYITSGRYVGTVESFSLRSVKLRHHRGPLFTIPFGELGAVQNQSRDWVTDKFNITVGYDTDIDFARRLIKRIGLELAEDPEFKQWVLSPIKMQGVQEFGEYGIVLRVKVTTRPGGAFNMKRKFYVRLRQVFKEQGIELPFPTVHVEGLQNPHGAESAPIEITPALKTAVAQSHTTRRRRKASTTD
>CP034444.1|AZO75804.1|1937817_1939710_+|ABC-transporter-ATP-binding-protein
MSTQNDDEKEDTSGRPAKAVVGSHRDEEEVFGKAYDPRIVRRIWSFVRPYRTRIFISVAAVLVFTLTQLAIPLVIRYAIDHGMAPGRVDRSVMAWATSAFAAVILVNYAASYVQESVVGKVAENVLSDLRRAMFGHLQRVSLSFMDKTEVGRLMSRLQGDVNSMQEFLETSVMSVGDIVLLFGIVSVLLWLDFRLGLLTLSTMPMLFIVRLFWLPRAKVAFMAAHETNSIANGALAEGIHGVRTVQSLERQHVNFELYDEKVLANLNAHLRSAKYAQVMVPIVDTLTGIAMATVIVVGGSMVLSHGLDIGVMVAFLFYIQRFFDPIRSLTMQYSVMQRAMASGQRISEVLDVPVEVSDRQGAVALSRDMDGSVEFRNVTFGYRRNQPVLKNVSFRVNPGETVALVGPTGSGKSSSMALAHRFYDVWSGQVLVGGHDVRDLTQDSLGEQMAMVLQEPFLFSGTVLENIRYHKTNATREQVVRAARAVGAHDFIEQLPGGYDTELEQRGGNLSLGQRQLISFARALVADAKILVLDEATASIDSYTEMLIQKALIKLLEGRTGLVIAHRLATIRGADRIIVLQNGEIVESGNHEQLMERKGLYARLYNMNYASFDDISEEEMEMDAVAGKAT
>CP034444.1|AZO71418.1|1935955_1937818_+|ABC-transporter-ATP-binding-protein
MHKDAKSSAPERGKSFAHVAEASWGKGLSTLLRIMRMTLRHPWQVAITIVSTFIAATLQLLIPRLLGRAIDQAQGVMAEGAGIAAQHALWGTALTLLVVSVLRGLFTMAQNYYGEAVGHQTGYELRLAFYEKIQRLSFAFHDRVHTGDLITLGLLDLDGVRMFFSTGVLRVVLLGVLIGVGAYLLISTDLVLGLLSLSFVPFVAWRSSVTQLRLRSTWLTLQQRLSVLSRVMDENLGGIRVVRAFAAQRHELGKFDRAKQDALALANERVDIRVSNTSAMNFSFLAAMGLVLWFGGQKVMSGQISVGTLAQFLTFMTILQMPVRQLGLMVNSFARASTCGTRLFELLDTELDIKDAPGAKDLVVTDGVLRFEDVGFHYPGSGGRPTLSGISFEARPGQTIGIVGPPGSGKSTIAHLIPRFYDVSSGTITIDGQDIREVTLQSLRKAVGVVQQDAFLFTTSIENNIAYGNPWARETRIERAAESAQLHNYIIGLPAGYTTIVGERGASLSGGQRQRLTIARSLMLRPSVLVFDDSTAAIDAGTEQRIRAAMKRFAKDRVTLIISHRLSSLMHADQILFVEGGRIVERGTHEELLALGGRYRALYDLQLRPDDDRPIALGAA
>CP034444.1|AZO71427.1|1952821_1953910_-|glycosyltransferase
MRIAFYAPLKSPNDPVASGDRQMARALIKALERGGHSVELASELRFYLRQQEPESFDALRIEAQKEVARLTRLWDRDGKPDLWFSYHPYYKAPDLIGPELASAFAVPYVTAEASYSRRRNAGLWADTQALVARAVEQAALNICFTQRDRQGLAGAIPDAAFGMLSPFIDTSAFRETPARSCRTRLVTVAMMRPGDKLESYRMLAQALGSIAHLSWTMSIVGDGPARDEVKAQFAGLPAERIEWLGAIEPAAVPDVLYSGGIYVWPGFGEAYGIAYLEAQAAGLPVVAQDIAGVPEVVRNGQAGFLTPPGDVAAFASAIERLLVRNDERTAMAAEARRFIFEERSLGAAAVRLAELLAKIPVS
>CP034444.1|AZO71428.1|1953985_1955164_+|DUF3095-domain-containing-protein
MCYLMLMETAIASDPFVASLPVFAKFESVADIDNYRPLPDGWALATADIVGSTKAIEAGRYKTVNMAGASVISALLNALGRQDLPFVFGGDGALVAFPGSALEITRNALAAVQRWVADELDLTLRAAIVPIKDIRAQGLDVRVARFQASEAVFYAMFAGGGGSWAEAEMKAGRYRIDPAPAGARPDLTGLSCRWNPIEARHGEIVSIIAIPRASRDLRGFQLLVSDIIALAGRQERDGHPVPASGPSYSLLPAGLDIEARAVAPVGRRWLAKLWVVFLMTLTAVTDRFGWTIGRFDPKIYKRDVASNSDFRKFDDGLKMTIDVEADVLQRIESRLKQAEEAGICSYGLHRQKSALMTCLVASPLQRDHLHFIDGAAGGYAMAAASLKAKAAI
>CP034444.1|AZO71429.1|1955563_1956904_+|adenylate/guanylate-cyclase-domain-containing-protein
MSAAQAEISTILMDKVADWLNQSALAGHDLETLIKGFCERLAAAGLPLKRVHLSFSMLHPLYDALGFTWFRGEGLEVESFRSKPGVPSDRFLTSPYYHLLSNKLDHLRRRLDPSMPSEFPVFDDLRLMGVTDYMAFVLPFSGNTSQGMMGSWSTDSAGGFSDSMISALLRIQSHLAIATKMAVLTKLADNMMTTYLGGDAGKRVLDGQIKRGEGDTIRAALVMGDMRGSSKLAETSGREIYIDTLNQFFDAVAAPFNRKGGQIMSFIGDGFIAVYPCERHRSQSEIACQAALAAAHKATARMMDLNLRRKEKGLFDIKFGLGLHVGNVMFGNVGLTDRLTFSVFGSAVNEVQRLQTLTKKYPHSVLASKDFASYCGANSWLTLGNEELVGIKQKLTVLSPDLSGALALDEDGALEPIHGRMSDAEQVMLLHRDAARISAGDPSKIQ
>CP034444.1|AZO71430.1|1957051_1958947_+|ABC-transporter-ATP-binding-protein
MNSSVDLLRIEDVGISFAIIGGPLHAVRRANLRVLPGKVTALVGESGSGKSVLSQAVMGILPNTARVRGRVLFSDPEKPGMTQDILQMPRDGPEIRALRGSRIGKIFQEPMTSLSPLHTIGNQVSESLQIHTPMTRAERMARTEEMLGLVGFPNPKRAYDMYPFELSGGLRQRAMIAMALICRPALLIADEPTTALDVTIQAQILQLLRGLQTKLNMAMLLITHDLGVVANVADEVVVMYHGEIMEAGPVEAIFRRPGHPYLKGLMAAVPHFDLKPGERLKALREVPVNVGSLLGKQTAPASKGPDDILLSVRDLKKTFTIRKSGWFGGNHQTTVRAVDGVSFDIRRGECLGLVGESGSGKTTVSKILMRAVTPSGGSVIFNGRDGPIDVLEGEGDTLRTLRAKIQMVFQDPVSSLSPRMTVENILSEPLEIHQRGNAASRLATVKSLMQAIGLDPRFIKRYPHSFSGGQRQRIGIARALALGPELLICDEPVSALDVSVQAQILNLLKDLQKELGLTYLFISHNLAVVDYMADRIAVMCGGRIVELAPREILLRKPIHPYTRSLVAAVPFPDLDRPMDFKTLKLSGASDTSAWGPQFRDEGEEDTLSPLDLGGGHLVLARRSADVSELRH
>CP034444.1|AZO71431.1|1958943_1960842_+|ABC-transporter-substrate-binding-protein
MISRRTVLGLLASAFVPGTLRAGDLEPEFLQPLLIAKALPPLAERLPKSPRVLNLAAMGRQPGQYGGTLRTIIGSQKDIRLMTIYGYARLVGYDEKLNLQPDILESFDVADDRVFTFKIREGHKWSDGSLLTPEDFRYCWEDVWLNEELSQGGLAPALLADGKPPSFEIVDPLTVRYSWDAPNPDFLPKLAAASPLSLVLPAAYLKQFHKKYQDPFRLAGLMEENRAKKWTLLHIRMSRQYRPENPELPTLDPWQNRTKPPAEQFIFERNPFFHRIDENGRQLPYVDRFVMNVSSSAIISAKTGAGESDLQCMGIDFSDYSFLKDAEKRYPVKMHLWKRTQGSRLALLPNLNCADQVWRGLLRDVRVRRALSLAVDRREINLAVFYGLAQESADTVLPESSLYRPEFAKAWVAHDPDRANALLDEVGLQRRDDDGLRILPDGRPAQVIVETAGESTLETDALELITDHWRQIGIALFIRTSQRDIFRSRALGGQIMMSMWSGIDNGVPTADMNPYQLAPTIDDQLQWPLWGAHYLSHGTLGEAPDLPPVVELMALLKRWNASTNAAERAEIWNSMLSIYTDQVFSIGTVNGTYQPVLASSRLRNLPDKALYGYDPTSYFGVYMPDTFWLGES
>CP034444.1|AZO71432.1|1960844_1961843_+|ABC-transporter-permease
MLRYIAWRITVMVPTLLIISALVFTIIELPPGDYFDSYVAELRAQGEAVDSDRIVMMRKEYGFDKPPVIRYFYWVGGMLHGDFGYSFEYELPVRNVIGDRMWLTVLVSFVTIIFTWLIAFPIGMYSATHQYSWGDYGLTFLGLLGLAIPNFMLALILMYFANIWFGTSIGHLMDQQYLGEPMSWAKAKSILAHLWIPVLIIGTGGTASMIRRLRANLLDELHKQYVVTARAKGLHPFKALVKYPLRMALNFFISDIGSILPAIISGAEITAIVLSLETTGPMLIQALQSQDMYLAGSFLMFLAFLTVIGVLISDLALALLDPRIRLQGGSTK
>CP034444.1|AZO71433.1|1961839_1963021_+|ABC-transporter-permease
MNTQSPLPAPGAPLQHYVSIAPFDLQSVEAMTPEQSKVFQASQLRLMWWKFRRHRLALISGIFLAALYLAILICEFLAPYNLHTRNMDYIYAPPQQVHLFDNGQFVGPFVYGRRMTLDMDTLKRNYIDRKDDVQRIRFFCKGDSYRFWGLIEGDMHLVCPAENGQLFLAGTDRLGRDVFSRVIYGARISLTIGLVGIAFSFLLGIVIGGLAGYHGGIFDLIVQRIIEVLQSIPSIPLWLALAAIMPITWSPILIYFGITVILGLLDWTGLARAVRSKLLALREEDYVLAAQLMGASSGRIIRRHLIPGFMSHLIATATISIPGMILGETALSFLGLGLRAPITSWGILLTEARSVSVIAFYPWLLLPILPVILVILAFNFLGDGLRDAADPYK
>CP034444.1|AZO71434.1|1963267_1963747_+|hypothetical-protein
MSRLESFIRRLTAQRDILDQVCVEVAKIEGPVIELGLGNGRTFHHLRERLPGRRIVAFDRALAAHSSSIPEPENLVLGEIRETARRFIGIEAALVHADIGTGYEDRDAVTSTWLPDLTARLLRVGGIAVSGTPLDHPQLQRLPLPPSVPADRYFVCRRV
>CP034444.1|AZO71435.1|1963763_1965179_-|adenylate/guanylate-cyclase-domain-containing-protein
MNEAQDLFSLLRQSAGVDPLAVDAIRRIIAEGEDHELCRINALAFAGKHGLDEERAIGAFLHAARVGIFDISWNVLCPGCGGVLDTNATLKTLQKDEYTCALCSSGYSPTLDEMVEVTFTVSPRMRRIAAHNPHELPMVEYFRQIYWASGVDLQDGDFAKTMEAFSLEDIELAPGEKAVLPIQLPSEFVIVFEPVTHSAQFIDVKGEPTKERRSLSLVFDREHVQSQTLEMQPGPLRISLENRTDTRVLPTVFIAGQALHDFLGKRRPFVTAKRLLTNQTFRDLYRTDTLDINQRLKITSLTFLFTDLRGSTALYERVGDLSAFDLVREHFQVLHEIVAAEAGAVVKTIGDAVMATFATPDRAIAAALRMREAMRALNDKSGREDLLLKIGVHAGPCIAVSMNERQDYFGQTVNIASRVQNLATAQAIFATRAVVEDNLTADLLHRNALTPVPHEVSLRGIEREIAVYTIP
>CP034444.1|AZO71436.1|1965378_1966203_+|hypothetical-protein
MPTSDNPPFPPTLRLFSLAVIIVLIVGAGLFFAPVLVKPRWPWAVTPFNARFLGGFYTAEMVVMAALLLWNRWSPGRLVLVMAFIFTVIVSAASFINLGYFNFERKAPWLWFLVYLASAAVSGLFLWRTRALPSAKGVTLNPSWRGYLPVESAILGLYGVGLLLFPLTFSGIWPWPVDAFHAQVYSAIFLAGAGGTYLVWASAPREELLVLGLAQFLVGLLAILGLAITDAAVHRIDWTAAGTLCWLALFGWIGISGAFKLYAASRYFGSRAAP

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Crispr_ID: CP034444_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034444_3

3503644-3503747

Orphan

Consensus_repeat	Method
GGGCGTCTTGCGCAATTCCGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034444_3

>merge|CP034444|3|3503644-3503747|CRISPRCasFinder
AAGCGTCTTGCGCAATTCCGGGCGTCTTGCGCAATTCCGGGCGTCTTTGCGCAACTCCGGGGCGTCTTTGCGCAACTCCGGGGCGTCTTGCGCAATTCAGGGCG

>CP034444|3|3|3503644-3503747|CRISPRCasFinder
AAGCGTCTTGCGCAATTCCGGGCG	TCTTGCGCAATTCCGGGCGTCTTTGCGCAACTCCGGGGCGTCTTTGCGCAACTCCG
GGGCGTCTTGCGCAATTCAGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP034444.1\|AZO72689.1\|3504467_3505463_+\|thioredoxin	unknown	unknown	gnl\|CDD\|225660
CP034444.1\|AZO72693.1\|3510054_3511533_-\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
CP034444.1\|AZO72692.1\|3506737_3510058_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235553
CP034444.1\|AZO72690.1\|3505627_3506299_+\|ATP-dependent-protease	unknown	unknown	gnl\|CDD\|225362
CP034444.1\|AZO72686.1\|3501819_3502752_-\|arginase	unknown	unknown	gnl\|CDD\|212515
CP034444.1\|AZO72680.1\|3495582_3497085_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP034444.1\|AZO72696.1\|3513439_3513646_-\|DUF1737-domain-containing-protein	unknown	unknown	gnl\|CDD\|227802
CP034444.1\|AZO72679.1\|3494476_3495448_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380625
CP034444.1\|AZO72682.1\|3498179_3499181_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380499
CP034444.1\|AZO72697.1\|3513675_3514554_-\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
CP034444.1\|AZO72681.1\|3497081_3498098_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
CP034444.1\|AZO72695.1\|3512748_3513186_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|226345
CP034444.1\|AZO72691.1\|3506326_3506572_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
CP034444.1\|AZO72694.1\|3511474_3512566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226918
CP034444.1\|AZO72687.1\|3502900_3503341_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP034444.1\|AZO72688.1\|3503867_3504368_+\|prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|226283
CP034444.1\|AZO72683.1\|3499183_3499588_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP034444.1\|AZO72685.1\|3500758_3501817_-\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|236064
CP034444.1\|AZO72678.1\|3492846_3493866_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225052
CP034444.1\|AZO72684.1\|3499681_3500704_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214

Protein	Function_ID	Function_description	E-value
CP034444.1\|AZO72689.1\|3504467_3505463_+\|thioredoxin	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	3.61053e-111
CP034444.1\|AZO72693.1\|3510054_3511533_-\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	8.5486e-76
CP034444.1\|AZO72692.1\|3506737_3510058_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
CP034444.1\|AZO72690.1\|3505627_3506299_+\|ATP-dependent-protease	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	1.38651e-83
CP034444.1\|AZO72686.1\|3501819_3502752_-\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	1.40165e-119
CP034444.1\|AZO72680.1\|3495582_3497085_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
CP034444.1\|AZO72696.1\|3513439_3513646_-\|DUF1737-domain-containing-protein	gnl\|CDD\|227802	COG5515, COG5515, Uncharacterized conserved small protein [Function unknown].	2.09223e-38
CP034444.1\|AZO72679.1\|3494476_3495448_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380625	cd19970, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	4.45411e-141
CP034444.1\|AZO72682.1\|3498179_3499181_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380499	cd06275, PBP1_PurR, ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.00588e-138
CP034444.1\|AZO72697.1\|3513675_3514554_-\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	8.15106e-93
CP034444.1\|AZO72681.1\|3497081_3498098_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	9.44311e-82
CP034444.1\|AZO72695.1\|3512748_3513186_+\|metallopeptidase-family-protein	gnl\|CDD\|226345	COG3824, COG3824, Predicted Zn-dependent protease [General function prediction only].	3.45426e-74
CP034444.1\|AZO72691.1\|3506326_3506572_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.20278e-24
CP034444.1\|AZO72694.1\|3511474_3512566_-\|hypothetical-protein	gnl\|CDD\|226918	COG4544, COG4544, Uncharacterized conserved protein [Function unknown].	2.54033e-53
CP034444.1\|AZO72687.1\|3502900_3503341_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.77039e-29
CP034444.1\|AZO72688.1\|3503867_3504368_+\|prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|226283	COG3760, COG3760, Uncharacterized conserved protein [Function unknown].	9.45723e-92
CP034444.1\|AZO72683.1\|3499183_3499588_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.39013e-43
CP034444.1\|AZO72685.1\|3500758_3501817_-\|ornithine-cyclodeaminase	gnl\|CDD\|236064	PRK07589, PRK07589, ornithine cyclodeaminase; Validated.	0
CP034444.1\|AZO72678.1\|3492846_3493866_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	2.36266e-39
CP034444.1\|AZO72684.1\|3499681_3500704_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0

>CP034444.1|AZO72687.1|3502900_3503341_+|Lrp/AsnC-family-transcriptional-regulator
MDALDERLVTLLRHDARRSVSDLALDLGVSRATVRARMERLEKSGEIIGYTVVLRADAVDQRIRGVMLIEIEGHAADRVIRALGGFPEVSTIHTTNGRWDLVVELGTASLTDFDAVLRRIRLIPGITGSETSLLLATPRTTRARLG
>CP034444.1|AZO72686.1|3501819_3502752_-|arginase
MRCRIVGAPVQDGAGRMGCEMGPSALRTAGLVSVLSELGHEVEDWGAVEKAQARAVAHGNLALKALPEISAWTTAIAETAYAASRDAMPIFLGGDHSISAGTVSGVARRAAERGRPLFVLWLDAHPDFHTLDTTTSGNLHGVPLAYASGQVGFQGYFPDLPAAVDPARICTIGLRSVDPAERRALKEAGVTVHDMRAIDEHGIAPLLRAFLAKVEAANGLLHVSLDVDFLDPSIAPAVGTTVPGGATFREAHLVMEMLSDSGLVSSLDLVELNPFLDERGRTATLMVDLTASLMGRRIMDRPTRSHSGSL
>CP034444.1|AZO72685.1|3500758_3501817_-|ornithine-cyclodeaminase
MTQPSRLAIVPFVSVDRMMKLVLAIGVERFLTELAAYIEEDFRRWELFDKTPRIASHSHDGVIELMPTSDGKMYGFKYVNGHPKNMREGRQTVTAFGVLADVGSGYPMLLTEMTILTALRTAATSAVAAKYLAPKGSRAMAIIGNGAQSEFQAIAFKALLGIDRLRLYDIDRSASEKCARNLAGKGFDIAICQTGQDAVEGVDIITTVTADKQYATILTDNMVGSGVHINAVGGDCPGKTELHRDILLRSDIFVEFPPQTRIEGEIQQLDADHPVTELWQVMTGQAEGRKTPEQITLFDSVGFATEDFSALRYVRDQLQTTGLYEELDLLADPDEPRDLFGMLLRAQMQPAA
>CP034444.1|AZO72684.1|3499681_3500704_+|zinc-binding-alcohol-dehydrogenase-family-protein
MRAIAYQKPSPITDDASLVDIDLPEPSPDGHDILVEVKAVSVNPVDYKIRRSTPPQGGDWKVLGWDASGVVRAVGKDVTLFQPGDPVFYAGSITRPGSNAQLHLVDERIVGPKPQTLDWAEAAALPLTAITAWESLFDRLDVKKIVPGAAPAVLIVGGAGGVGSIAVQIARQLTDLTVIATASRPETHEWVRKLGAHHVIDHSKPLAAEVAALGIGAPAFVFSTTQTGQHVKEIAELIAPQGRFGLIDDPGAFDIMLFKRKSVSIHHELMFTRSIFGTPDMAEQGRLLKEVSRLVDAGRLRTTLTRRLSPINAANLKIAHALLESGTARGKIVLEGFAAK
>CP034444.1|AZO72683.1|3499183_3499588_-|transcriptional-regulator
MAKPRHSRFDCNPGCAVEAAISLIDGKWKSVILHHLLAGTARFNEIRRLVPGLTPRMLTNQLRDLEIDGLVTRTVYAQVPPKVEYSVSELGRSLEPIIQALRIWGTDHMDLFQRHKPSEPDRKSMPGPQPVGFS
>CP034444.1|AZO72682.1|3498179_3499181_+|LacI-family-transcriptional-regulator
MTTIADVARYAGVSVATVSHVMNRTRHVEPETAERVRAAITALRYSPNSLARSLRRGETKTIGLLLPDNSNPFFASVARQIEDAGFVAGYTVILCNSDGSAEKEERYLSVLMAKQIDGLIFAGSSDHARVFASLSAAVPAVLLDREIHSVNVDSVLVDHDHGGYLAGCHLVGLGHKRIGVIGGPRDSSSSPARLRGFTRALEEAGLALPPSSVVDSDYHFAGGRLAMERLLEQAPEITAVFACNDLMAMGAITALRSRGLRVPDDMSLIGFDDIPYAVTTWPPLTTIAQPVEKIGTRAVSLLLERVVEPEAPSRREVLTPVLVERESCAPLRG
>CP034444.1|AZO72681.1|3497081_3498098_+|ABC-transporter-permease
MSETSQSLVSAPVSPGRAKFLRFLVRDAGVLLALVLITLFFSVSAPYFATPGNALKIFVQIAINTVLAAGMTFVILTGGIDLSVGSVLALCTVVGATVMINESLSPAVAITLALLACMATGAVCGFLNGWISTRWKIPSFIVTLGMLNMAAGAARVVSDNSTITGLPQSFVDFGNLIIGGFLPSIFLVAVLVIAAGWFVLRFTVFGRMIFAVGTNDEAVRLSGHNPDFYKVAAFTISGLTAGIAAMVYLLRLNIGSPIAGVGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGVGDNFKPIVIGLVIVLAVILDAYRERLLRRIR
>CP034444.1|AZO72680.1|3495582_3497085_+|sugar-ABC-transporter-ATP-binding-protein
MDDVILSLEGVGKIFPGVVALSDVSLSIARGETHIVLGENGAGKSTLIKLLAGIYQPDSGAIAFNGKPYRPRTPHDAHQSGIRIVHQELNLLPYLSIAENLMLENLPRRAFGVVDRRALNRRAVALLKEVGVDIDPRTRVEALGVAQMQLVEIAKALSYDSKLLVLDEPTATLTPPEIERLFSIIKRLKAKGVTIIYISHRLHEVFEIGDRVTVLRNGRLVATRDLHGLSVPDIVRMMIGRDIADEFGFDARVVPGKVALSVTNLKRDAATPAISFDVRHGEILGVAGLVGSGRTEAMRALFGADPKLDGVVEIDGRPVAITAPKDAVRAGLSLLTEDRKGQGLLLDLAVDRNITITDLGKVSRHGLLNRRAESAAANDLVGQLRVKASSIEQAVRNLSGGNQQKVVLAKWLFRGTSTLILDEPTRGVDIGARREIYQLLWMLAAAQKGIIMVSSDLPELMGMCHRIIVFSKNRIVGEVPRPEFDQERILSLAYQEYVRP
>CP034444.1|AZO72679.1|3494476_3495448_+|sugar-ABC-transporter-substrate-binding-protein
MSKISNTHGLELGSFSRRQFLKTSALAAGALALPLGPALAADKPKVGLVMKSLANEFFKQMQAGAEAYAAKNKDKFDFAAVGMKDERDFAAQVDAIENFITQNYNIIVVAPADSKAMVTPIAKALKAGIKVINIDVALDEKAKKKAGVDLAFFGPDNRAGAKLAGDALGKALGKGGKVVILEGNPEADNAKQRKLGFDDSVKEYKLKLLDSKTAHWETEEANTLMTNFLTQHPDIQGVMAANDSMALGVVKAIDAAGKSGQIKVVGFDNIPAVGPLLKEGKMLATVEQYGAQMAAMGIDYGLRELAGEKFSGWVKTDVKLITA
>CP034444.1|AZO72678.1|3492846_3493866_+|LLM-class-flavin-dependent-oxidoreductase
MKKIGFLSFGHWSPSPQSGTRSGADALLQSIDLAVAAEELGADGAYFRVHHFARQLGSPFPLLAAAGAKTSRIELGTAVIDMRYENPLYMAEDAGAADLIAGGRLQLGISRGSPEQVIDGWRYFGYVPEEGKTDADMARRHAEVFLEVLRGQGFAQPNPRPMFPNPPGLLRLEPFSEGLRERIWWGAATNATAEWAARLGMNLQSSTLKFDESGQPLHIQQAKQIRAYRAAWKEAGHEREPRVSVSRSIFALVNDMDRAYFGGSEGEDHFGYIEPEKRAVFGRTYAAEPDVLIEQLREDQAIAEADTLLLTVPNQLGVDYNAHVIEAILKHVAPALGWR
>CP034444.1|AZO72688.1|3503867_3504368_+|prolyl-tRNA-synthetase-associated-domain-containing-protein
MPKTEAELYAFLADLGISVSTVRHPPLFTVADSQALRGEIPGGHTKNLFLKDKKDNFFLVTVGEEAEVDLKQIHHLIGAAGRVSFGKPEMLMELLGVIPGAVTVFGLINDTAGRVKVFLDQELMSHEVINGHPLTNEATTTIAAADLVRFVEATGHDAVILKVSLS
>CP034444.1|AZO72689.1|3504467_3505463_+|thioredoxin
MSDNNPFSGSFGGNAGQYAQSVQYGGADRAKASLGEAPAAADLIKDTTTATFAADVIQESRRQPVLVDFWAPWCGPCKQLTPQLEKAVKAAGGKIKLVKMNIDDHPSIAGQLGIQSIPAVIAFKDGQPVDGFMGAIPESQITQFIQKVGGKGGGGAPQITEALAAAAEAREAGDVHTAADIYDAILEQAPETIEAIAGLGEILFEAGDSQGAEAVLAKAPEDKKDAPALSALRARMTLAAEAAALGNPAEFERRLAADPNDHQARFDLAMVQNAHGQKTQAADNLLAIIKADRTWNDDGARAQLLKFFEAWGMTDEATLAARRKLSSLLFS
>CP034444.1|AZO72690.1|3505627_3506299_+|ATP-dependent-protease
MQVGNARYRLARDLPSTIPVFPLAGALLLPGGRMPLNIFEPRYLQMIDQAMAGPRLIGMIQPSLDGALRDDGEPELCSVGCAGRIISLAETGDGRYLISLQGVCRFRVTQELTVKTPFRQCRIAPFLADLEEDPAGAEVDRPALLKAFRAYLQANDLEADWESVSRAENAMLVNALSMMAPYGPAEKQALLEAADLKTRAETLIAITEITLAREDEDFGSSLQ
>CP034444.1|AZO72691.1|3506326_3506572_+|Trm112-family-protein
MAADGRDARKATVDPKLLELLACPLTKGPLTWDAERGELISRVAKLAYPVRDGIPIMLPSEARTISAEDALPPPPRLSGPS
>CP034444.1|AZO72692.1|3506737_3510058_-|DNA-polymerase-III-subunit-alpha
MNALTVIPYAEFGISSNFSFLRGASKPEELVVTAKFYGFSSIGLADRNTVAGVVRAWQQAKVEKLAYHPGCRLVFRDGTPDILAYPRDRKGWGHLCRLLTQANLRDENEKGATLLELGDLLEWGDLMSLAVLPGLSGGAEGNLALISRLKGRFGAALRLAVAPDYGGNDRFRIEQAAAMAEHAGIPLMATNDVLYHAADRRPLQDVLTAIRLNTPVSEVGLELTANAERHLKPPLEMARLFRRHPEALAETLCFADELTFSLSDLEYNYPDEPTESGLGPQAELERLAREGAVRRYPAGVPVHVTRRIAEELALIERLNYARYFLTVHDIVKFARSKDILCQGRGSAANSVICFCIGITEVGPDRIDALFERFISEERNEPPDIDVDFEHERRDEVIAYIYEKYSAKRTALAAAVISYRGRSALREVAKAMGLSEDVRSALSSTIWGWSTSELGEREANAGGLDRTDPLSRQVLERANEIMGFPRHLSQHVGGFVITRDRLDEVVPIVKTAMEERKMVEWDKDDLDAVKILKVDVLALGMLTCLKRALTLLTQHYPEARDDYGRPYGLNSLPPEHPRVYDMICRADTLGVFQIESRAQMSMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGKEDVNYPSPDLEKILGKTLGVPLFQEQAMKIAIVAGGFRPGEADELRRAMATFKRTGTIGNYRQRMIDGMMNNGYEQDFAERCFKQIEGFGEYGFPESHAASFALLVYASCWFKTFFPDVFCAAILNAQPMGFYQPAQLVRDARDHGVEVREVDINHSVWDCTLERSAFDPSRILERHASMRGVIEAAHAVRLGFRQIKGLSEERMEAAVARRGDGYRSVRDVWLRSGLDVGEIEKLAQADAFRSLGLDRRAALWEVRALDGRSAAEKLPLFDRPSLGLRELEPETKLPKMPLGEHVVHDYRSLGLSLKEHPVAFLRERLTRAGITPNASLPSVRDGRRVTVAGLVLVRQRPGKGNAIFITLEDEKAIANVIIWPRVFDRFRSVVMGARFIRVTGKLQQESDVIHIVADRIEDLTPWLGVLLRPPVIEHQPDANRSAPANRSLPVREDIETLSGKAEEVMPKGRNFQ
>CP034444.1|AZO72693.1|3510054_3511533_-|DNA-polymerase-Y-family-protein
MISHRDNNTQRIAALDERAEALKLKRGMGIADARAMHPSIDVVEADTEADRRLLEGLADWCDRYTPLVAIGGEDGLFLDVTGCTHLFGGERAMQDEILTRFFEQGFDVRAGLASTPGAAWAAARFHGDRIVAFGEEEALLAPLPLSALRIAPETRASLESVGLRTAGAVMAAPRAPLARRFGATLLLRLDQALGRLDEAVSPRLPVAPLSVERHLAEPVMLTDDIERLVSRLATALKADLERRGEGARALALLLFRVDGAVSRIAVGTSRPMREPQLIRKLFHERLTALEQNIDAGFGFDLVRLSVLSVAAFDLAQGDLAGEADDDDADIALFADRIRARLGEAAVLKPVVVESHLPERAVAIVPFAEAPQRRMPPKQSDRAAPPMTIYPPERPVRLFRSPEPIEVPATEIPEGPPMNFRWRRALYRVARAEGPERIAAEWWRQLPGEEEAPTRDYYRIEDSEGRRYWLYRQGLYGGAAQAAPRWFMHGVFA
>CP034444.1|AZO72694.1|3511474_3512566_-|hypothetical-protein
MAMSAVARETVFALRRQIAKIEGTLPERLEAPASGAPRTIPGRAIPGKVRSGFPSGIAEKQIAGDAAGSGIGTNIVRRGLAVASPDAFLHTGIEGLDAALGGGLPKAALSEIHGLETRDAGAVAGFALSLASLILRKKHGLPVLWIGTAEIFREAGFPYARGLHALFGIEPEQLLFSEAPKLLDALWIAEEAARMTAFAAVILEIRGSPRLLDLTATRRLHARAQGAGRPVLLLRQAGEAEPTAAPVRLIVSAAPAAARRTVAGPLAGSIGRPAFTVDIGKSRTALPGQFTLEWNPDEHVFAERTENSVAVVPVPLRGADPAPASGAVLAFPALASPALASPTAGDQPSRQQHPAHRGPRRAG
>CP034444.1|AZO72695.1|3512748_3513186_+|metallopeptidase-family-protein
MARIYKTRTWHDQLSPSMDEMELLALEAYAHLPEDFRKLTGEIIIQIADFPTDEIMDDLSLETPFDLLGLFEGRGIAERWNPQTGEGPNRITLYRRAILDYWAENEETLGDIVTHVLIHEIGHHFGLSDDDMERIEEAAEQAAAG
>CP034444.1|AZO72696.1|3513439_3513646_-|DUF1737-domain-containing-protein
MKLYRFLSGPDDATFCHKVTAALNKGWHLFGSPTYAYDRTTKSMRCGQAVVKDVEGQEYTSDSKLSDW
>CP034444.1|AZO72697.1|3513675_3514554_-|CoA-ester-lyase
MAQDTYRPRRSVLYIPASNEKALAKVASLACDAVILDLEDAVLPADKATARDRVAGILAGRQRRCEMVVRVNPLSSEWGIDDLLAVAKAEPDAILLPKGGTPRDILEAGDLLDDNFAPDTVKLWAMIETPKALLNVGAIAELGRDQASRLACFVAGTNDLVKATGILATPDRRYLMPWLMQLVLAARAGGLDVIDGVANDFSDLDGFARECAEAAAMGFDGKSLIHPAQIEPANRAFAPAPEALARARAIRDAFALPENAGKGVIALDGRMVERLHLAEAEKLLAKAAIIGA

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Crispr_ID: CP034444_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034444_4

4209289-4209434

Orphan

Consensus_repeat	Method
GGCATCAAGGATGGCGCCGAATTCGTCATCCCGACGATGAACTGACCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034444_4

>merge|CP034444|4|4209289-4209434|CRISPRCasFinder
GGCATCAAGGATGGCGCCGAATTCGTCATCCCGACGATGAACTGACCGGACGGTTTCTCGGTTGCGCGTCCCCGCCTGCGGCTGCGGCGCGCGGCAGGCATCAAGGATGGCGCCGAATTCGTCATCCCGACGATGAACTGACCGGA

>CP034444|4|4|4209289-4209434|CRISPRCasFinder
GGCATCAAGGATGGCGCCGAATTCGTCATCCCGACGATGAACTGACCGGA	CGGTTTCTCGGTTGCGCGTCCCCGCCTGCGGCTGCGGCGCGCGGCA
GGCATCAAGGATGGCGCCGAATTCGTCATCCCGACGATGAACTGACCGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP034444.1\|AZO73210.1\|4211376_4212312_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
CP034444.1\|AZO73209.1\|4210234_4210552_+\|hypothetical-protein	unknown	unknown	unknown
CP034444.1\|AZO73206.1\|4206757_4207639_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP034444.1\|AZO73205.1\|4204890_4206150_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
CP034444.1\|AZO73198.1\|4196819_4197671_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
CP034444.1\|AZO73202.1\|4201828_4203028_+\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|225416
CP034444.1\|AZO73216.1\|4217524_4218919_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
CP034444.1\|AZO73208.1\|4209687_4209990_+\|hypothetical-protein	unknown	unknown	unknown
CP034444.1\|AZO73203.1\|4203060_4203579_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
CP034444.1\|AZO73204.1\|4203651_4204797_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
CP034444.1\|AZO73211.1\|4212353_4213637_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP034444.1\|AZO73213.1\|4214756_4215644_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP034444.1\|AZO73215.1\|4216616_4217519_+\|branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
CP034444.1\|AZO73200.1\|4198352_4198835_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|234634
CP034444.1\|AZO75960.1\|4200323_4201652_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
CP034444.1\|AZO73201.1\|4198984_4200319_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227278
CP034444.1\|AZO75961.1\|4210603_4211263_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP034444.1\|AZO73199.1\|4197913_4198291_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
CP034444.1\|AZO73214.1\|4215809_4216196_+\|ectoine-synthase	unknown	unknown	gnl\|CDD\|183953
CP034444.1\|AZO73212.1\|4213736_4214738_+\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|184428

Protein	Function_ID	Function_description	E-value
CP034444.1\|AZO73206.1\|4206757_4207639_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.00686e-40
CP034444.1\|AZO75961.1\|4210603_4211263_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	7.41461e-32
CP034444.1\|AZO73198.1\|4196819_4197671_-\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	5.3772e-55
CP034444.1\|AZO73202.1\|4201828_4203028_+\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|225416	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown].	1.36411e-105
CP034444.1\|AZO73216.1\|4217524_4218919_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	5.47323e-135
CP034444.1\|AZO73210.1\|4211376_4212312_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	3.721e-88
CP034444.1\|AZO73203.1\|4203060_4203579_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	5.56655e-82
CP034444.1\|AZO73204.1\|4203651_4204797_+\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	7.27031e-141
CP034444.1\|AZO73211.1\|4212353_4213637_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.54873e-50
CP034444.1\|AZO73213.1\|4214756_4215644_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.75255e-86
CP034444.1\|AZO73215.1\|4216616_4217519_+\|branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	8.51973e-89
CP034444.1\|AZO73200.1\|4198352_4198835_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	5.70875e-73
CP034444.1\|AZO75960.1\|4200323_4201652_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	3.45402e-156
CP034444.1\|AZO73201.1\|4198984_4200319_+\|hypothetical-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	2.00515e-125
CP034444.1\|AZO73205.1\|4204890_4206150_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
CP034444.1\|AZO73199.1\|4197913_4198291_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.30167e-52
CP034444.1\|AZO73214.1\|4215809_4216196_+\|ectoine-synthase	gnl\|CDD\|183953	PRK13290, ectC, L-ectoine synthase; Reviewed.	6.6797e-59
CP034444.1\|AZO73212.1\|4213736_4214738_+\|4-hydroxyproline-epimerase	gnl\|CDD\|184428	PRK13971, PRK13971, 4-hydroxyproline epimerase.	0

>CP034444.1|AZO73206.1|4206757_4207639_-|LysR-family-transcriptional-regulator
MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPAGERFLDIAERMEGDMIAARSTVAGEGDDVSGTVRIGAPDGFGVAFLAKRLGELTALHRELTIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDYTLGLFASRAYVEANGLPKTAADLGRHTLIGYVPDLIVSPSLDYAAEFSPDWRSSFAISSALGQAEAVRSGAGIGILHTFVARSMPELVPVDIVAPIRRAYWLVYHESVRPLRRVQLVANFITKAVEREKGLFV
>CP034444.1|AZO73205.1|4204890_4206150_+|D-amino-acid-dehydrogenase
MTVLVLGGGVIGITTAYFLAEAGHEVTVIDRQQGPALETSFANAGEVSPGYASPWAGPGIPVKAVKWLLMKYGPLVVRPAFDPHMWTWLLKMLRNCTAERYALNKSRMVPLAEYSRDTLKALRAAAGITYDERSKGTLQLFRKQKQLDGTGGDVEVLKKYGVPYELLDRDGCIAAEPALAGVREKFVGGLRLPGDETGDCKMFTDRLAELCVARGVAFEYGTTIRRVVRNRNRVVQVGTDKGWRTADAYVMALGSYSAPFMRKMKRPIPVYPVKGYSITVPITDAAAAPVSTIMDETYKVAITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGGGDLKAASFWCGLRPMTPDGPPLIGQSELSNLYLNTGHGTLGWTMACGSARVLADIMSSRVPEINALDLSPERYLRA
>CP034444.1|AZO73204.1|4203651_4204797_+|alanine-racemase
MNDDTGRGFPAPDGAGGSTVSEAAAGAILTIDLGAIRENYRRLKARLAGVRCAGVLKADGYGLGAAQVASALIKDGCDIFFVALLGEGIALRKALGPGHDIFVLNGLPPGSEPEALAAGLHPVINSTAQLKAWREAARAAGRKLSAAVQVDSGMSRLGMPPADVEALATDAFDGIDIRFVMSHLACADEPRNPANEAQRLAFERLRKMLPAARASLANSSGIFLGPAYHYDLARPGAALYGVNPTPGEANPMLPVVRLQAKVAQTRSVGDGAGIGYGHTHHARGPLRLATISLGYADGWHRRAASAAWFEGARLPFVGRVSMDSIILDISALPAGTPGEGDLVELIGPSQSVDDAAAHAGTIGYEVLTSLGARFHRRYIGG
>CP034444.1|AZO73203.1|4203060_4203579_+|RNA-pyrophosphohydrolase
MSKKLIDPETLPYRPCVGLMILNRAGLVWVGHRIAEPDSEFSGTTKLWQMPQGGIDKGEEPLTAAGRELYEETGMRSVSLLAEAPHWINYDLPPHLVGVAFKGRYRGQTQKWFAYRFEGDESEIEINPPPGGHTAEFDRWAWRPMQELPDLIVPFKRQVYEQVVAAFRHLVR
>CP034444.1|AZO73202.1|4201828_4203028_+|divergent-polysaccharide-deacetylase-family-protein
MADIDKDIERPLGQTIRLQRPAARGISAGALGAAVAVLAVVGISGAIALREKPFRKPEGVAVSTPKVTVAPTPAPAPAATPAPAEVATASPNASTPMKSGGPQIIHVQTEEGDGPPKAGIVIRDPSALGQNLKVAHIPDRALIEAGDSGPLPVRSADGRRPFDVYARPWSGARGARVAIVIGGLAVSQTGTQAAIAKLPAEVTLAFAPQGNSIDRWMKAARQGGHEIVMQVPLEPFDYPNVNPGRNTLTVSASPEENLKSLHWALSRTTNYTGVMNYMGARFSADANAMASFMAELGKRGLAYVDDGSSARSLAPDLALKDGVPFVAGDMAIDAVQDRGEILKKLDSLEATARAKGTAVGIGSAFDITVDTVASWVAEAKKRGIEIVPISAVAIDPQKG
>CP034444.1|AZO75960.1|4200323_4201652_+|S41-family-peptidase
MRKLSLLFAGALMGASAMSLVYGAPGSAANAAGSETYKQLAIFGDIFERVRAQYVTPPDDKSLVENAINGMLASLDPHSSYMNAEQAQDMRVQTKGEFGGLGIEVTMENDLVKVITPIDDTPAAKAGVLAGDYIAKIDGEEVRGLTLNDAVEKMRGPVNTPIKLTILRQGADKPIELTVVRDIIKVKAVKYRVENDVGYMKITSFTEKTYDDLENAIENIKKQVPNDKLKGYVLDLRLNPGGLLDQAVSVSDAFLKRGEIVSTRGRDPKDVTRFDAKPKQSDDIGGKPLIVLVNGGSASASEIVAGALQDLRRATVVGTQSFGKGSVQTIIPLGENGALRLTTALYYTPSGKSIQGKGITPDIKVDQPLPPDLQGRDLTRGESDLKGHIKGADESSTGSGSAAYVPPEPKDDLQLIYAEQLLRGQKTDPAFPPNPDKAVLNQ
>CP034444.1|AZO73201.1|4198984_4200319_+|hypothetical-protein
MSEGWNSRTRAWRSRCGLTLVAALIALGPAMAAENTLDVAPDPDRSRAEYEQVSKEITLSSERLAKLSADVATVKKDHASISAALIQSAMTEQKLGQDIEDIGAKLEGLKAEEEKLHASLVARRDVLAEVLGALQRMGLNPPPAILVKPEDALSSVRSAILLGAVVPELRQQTDRLMADLKEQTRVTASIEAERGRLTAAVTEQTAEKKRLTMLLEAKQKLQADTEAALTAEQQRSQQLAAKASSLKDLIASLEADKVRKAADQARAADRKSADGDTTASTTEPAAPPVPEGNRLTASAPFAALQGQVALPVIGKIKRRFGTDDGNGAMMQGDMVATQSGAIVTAPADGNVLYAGPFRSYGQLLILNAGDGYHVVLAGMSRISVATGQSVLAGEPVGAMGEARVASTSASQNGNATPELYVEFRKDGKPVDPAPWWADRFSGRT
>CP034444.1|AZO73200.1|4198352_4198835_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKITVHAVGRMKTGPERELADRYFERFAKSGPAVGLEFAGIVEIPESRGQSADERRREEGQKLQAQLQQGTVLILLDERGKALSSEDLAARIGQLRDSGRKALVVAIGGADGHDRSLRDEADLMLSFGALTWPHQLVRVMLGEQLYRIATILSGHPYHRS
>CP034444.1|AZO73199.1|4197913_4198291_+|ribosome-silencing-factor
MPSPAGISGNDAASLAITTVLASLEDSKAENIVSIDIQGKSSLGDYMVIASGRSHRHVSAVADHLLKALKDAGLGMARVEGLASADWVLIDSGDIIVHVFRPEVREFYNLEKMWQAPDLEEETLH
>CP034444.1|AZO73198.1|4196819_4197671_-|mechanosensitive-ion-channel
MPTDPQEALLVVQAGLAQLSTLIVSYSFSAIGAVILLVVGYFVAGLAERSIFAGLGHIHGFDATLRHFFSKIVRYAILILVVIMVLGQFGVQTASIIAAIGAVGLAIGLALQGTLQNIAAGIMLLALRPFRIGESIEVGSIAGTVEEIGLFATKLRTVEGVYILAPNSTLWNQPVRNFTRNGVRRTDISLSIGSWNDIDRGQKTLLAIAGTEKRIRREPAPIAFVAGLGETTVSLTLRYWTSAADYFATQIDMTKRAKQAFDNEGISIPLPPPEAPAAEARKQ
>CP034444.1|AZO73208.1|4209687_4209990_+|hypothetical-protein
MTRFLMAAIILAAAAIYGIAQANAAAQCAPRSDVVKALGDKFHESVAGRGLINPNVVLEIFVSDQGSWTVLASDTKGQSCILSVGEGWDSPTIAAAMPGA
>CP034444.1|AZO73209.1|4210234_4210552_+|hypothetical-protein
MARIFSFRWIKLAVVGAMVALPALSARAQVICGGHDYLVSRLAEAFEEKRLGYGVAGEAAIFEVFVSAKGTWTILMTDVKGQACILAAGDGWEDTLATAVRQPGG
>CP034444.1|AZO75961.1|4210603_4211263_-|GntR-family-transcriptional-regulator
MISVETNATFEPAATKAYRALEHMIVTLELAPSSFVTEGALIERLGLGRTPVREAIQRLAWEGLLDIRPRAGIAVAPLHAGDWLRVIDARRGVEVVLARSAARFVTREAADLFHEAALAMQKAVISGNVLAFIQADKQLDEALAIAADNPFAARVAAPLQTHSRRFWFRYKADTGLAESAEHHVALIRSILDGDEESAAKDAKKLMALLRGHAEMAATR
>CP034444.1|AZO73210.1|4211376_4212312_+|dihydrodipicolinate-synthase-family-protein
MWAGVFPAVTTKFTADDRLDHAEMERCYGLQMEAGCDGIIVCGSLGEGPMLSPDEKIEVLKTAQKVAAGKPVLLTVNEPGTREAASIARRAAREGANGLMVVPSPIYHTDRQETVAALRAVAEAGDLPVMIYSNRLAYRVDVTVDLMEELASDKRFVAIKESSDDIRRSTEIINRLGDRYDLFTGVDNLAFEALSVGAIGWVAGLVTAFPRETVAIYQLMKQGRREEALAIYRWFRPLLDLDVSTYLVQNIKLAEVLAIDTNDRVRMPRQPLSGERRKAVEKIVRDALAVRPKLPAFQNTPRPAEKMVAAE
>CP034444.1|AZO73211.1|4212353_4213637_+|FAD-dependent-oxidoreductase
MGRRPAPEASSPRERGEEEDVAIIGGGIIGICAAALLAEAGRSVAVFDRTGICEETSSGNAAAFAFSDVLPLAHKGMIRQLPKWLADPLGPLAIPPAYLPKLLPWLIRFWRAGAARHYEASLAAQAGMMKLAEAEWMGLLDRSGTRPMLREDGSLELYESEAEFRAALPGWAARERFGIGFRHVEGEEMAGLQPGLAPRFVKGTFVPSWKTVADPKLLGKAVFAYAQTLGARFEPARVERIAAGTDGATIVLADGTAQKAKQLVIAAGARSHLLAKDLGDRIPLETERGYNTTLPVSAFDVKRQLIFSGHGFVITPLETGLRVGGAVELGGIERPPNFQRSKAMLEKARRFLPGLDPSGGREWMGFRPSLPDSLPVIGRARTPNVFYAFGHGHLGLTQAAATGRLIRDLVLGQTPPLDLNPFRPQRF
>CP034444.1|AZO73212.1|4213736_4214738_+|4-hydroxyproline-epimerase
MAKKSFFCIDGHTCGNPVRLVAGGGPLLEGSTMMERRAHFLAEYDWIRTSLMFEPRGHDVMSGSILYPPTREDCDIAILFIETSGCLPMCGHGTIGTVTFAIEHGLVKPKTPGVLRLDTPAGLVVAEYKQVGDYVEEVRITNVPSFLYAEGLTVECPVLGEIGVDVAYGGNFYAIVEPQKNYRDMADHSAGDLIAWSPVVRQRLNEKYSFVHPENPGINRLSHMLWTGKPKDAEADARNAVFYGDKAIDRSPCGTGTSARMAQLHAKGKLKAGDSFVHESIIGSLFKGRVEKEVSVAGTPAIIPSIGGWARMTGLNTIFIDDRDPFAHGFIVT
>CP034444.1|AZO73213.1|4214756_4215644_-|LysR-family-transcriptional-regulator
MDYLPLNAIRAFEAAARHLSFSAAGEELHVTHPAISHQIRRLEEWLGVPLFHRDARKVRLTDAGLALQASANAALSDLAAACRRIRRNAVVASISVGCIPSIASRWLVPRLPDFTARHPEIAIRVAYAKAEDRLEDDDNDILITLGADPSPRATSLKLFSRVSQPACSPHYLARKGRFGTPADMAAVDLLHDETRQGWREWFSQAGMAGADVGNGPVFADFNILATAVIAGHGVALCPIEVFREELRRGDLVVVSDIATDKDKGYYLTMSAQPSAAEITFADWFRSQVSTDDEAV
>CP034444.1|AZO73214.1|4215809_4216196_+|ectoine-synthase
MFTRQLADVEKTDFFVDWGNGTSHRLLTQRDGMGFTVCHTVVRAGSESRLQYRRHLEACYCISGSGEVEDMSGAVHRIESGTIYVLDAHDDHYLRADAAGDMVLVSVFNPPLHGTERHTLSGEGSSAY
>CP034444.1|AZO73215.1|4216616_4217519_+|branched-chain-amino-acid-ABC-transporter-permease-LivH
MQYFVQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMVGAFTALIVFLILGAMFYSVPVVVALLIMMIVGMLLTSLYNWTIEKVAYRPLRGSFRLAPLITAIGMSIALSNFVQVTQGPRNKPIPPLVSQVYTIDGISVSLKQIIIVLVTAVLLAIFWYLVNRTALGRAQRACEQDRKMAALLGVDVDRTISITFIMGAALAAVAGTLFLMYYGVVVFSDGFVPGVKAFTAAVLGGIGSLPGAVLGGLLIGFIESMWSAYFSIDYKDVAAFSILAIVLIFLPSGILGRPEVEKV
>CP034444.1|AZO73216.1|4217524_4218919_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MAVTVSPERDVVVPPIQRAFREALYAGAIALGLFVLFIGLRTDQNISNELILVQRWGLLALVVIATAVGRFLYVGYAQPAMERAKAEKAKAPAAVAAEPGFVRRNFNRIGVTVLIAYPVVMVLAFGFQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYAYALLGTHFGLSFWILLPAAGMMAAFWGVMLGFPVLRLRGDYLAIVTLAFGEIIRLVIINWREVTNGSAGVSGIPKVSFFGLMSFNVSDPNYIAKVLHIAQSGAYYKIFLYYLILGLCFITAFVTIRLRRLPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGSFFAARQGFVSPESFVFLESAIILAIVVLGGMGSLGGIAVAALVMIGGTEILRELGFLKAVFGPDFTPELYRMLLFGMAMVIVMLWKPRGFVGSREPTAFLKERRAVSGSFTKEGHG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5311210 : 5331855

Bacillus_phage(40.0%)

holin,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO74163.1\|5311210_5312146_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AZO74164.1\|5312265_5313120_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AZO74165.1\|5313116_5314298_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-20	33.2
AZO74166.1\|5314500_5316534_+	autotransporter domain-containing protein	NA	NA	NA	NA
AZO74167.1\|5316721_5317759_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZO74168.1\|5318205_5319162_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AZO74169.1\|5319148_5320879_-	transcriptional regulator	NA	NA	NA	NA
AZO74170.1\|5321049_5322135_+	pyridoxal-phosphate dependent enzyme	A0A1X9I5F1	Streptococcus_phage	8.6e-64	41.8
AZO74171.1\|5322232_5323714_+	amino acid decarboxylase	NA	NA	NA	NA
AZO74172.1\|5323734_5325759_-	adenylate cyclase	NA	NA	NA	NA
AZO74173.1\|5325930_5326170_+	hypothetical protein	NA	NA	NA	NA
AZO74174.1\|5326192_5326561_-	YciI family protein	NA	NA	NA	NA
AZO74175.1\|5326770_5328180_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.1e-06	22.7
AZO74176.1\|5328176_5328893_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-30	34.8
AZO74177.1\|5329131_5329434_+	hypothetical protein	NA	NA	NA	NA
AZO74178.1\|5329474_5329723_+	hypothetical protein	NA	NA	NA	NA
AZO74179.1\|5330313_5330619_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
AZO74180.1\|5330901_5331855_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.8e-33	35.5

DBSCAN-SWA_2

6306257 : 6319643

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO76089.1\|6306257_6307058_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.1e-31	32.2
AZO74969.1\|6307054_6307810_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.1e-41	47.1
AZO74970.1\|6307990_6308209_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
AZO74971.1\|6308253_6308994_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AZO74972.1\|6308990_6309854_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.6e-50	45.1
AZO74973.1\|6309963_6311268_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.6e-102	57.5
AZO74974.1\|6311272_6312031_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
AZO74975.1\|6312044_6312698_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.5e-18	39.8
AZO74976.1\|6312838_6314368_+	LysM peptidoglycan-binding domain-containing protein	S6B1Q4	Bacillus_phage	5.3e-11	37.5
AZO74977.1\|6314470_6315343_-	ATP-binding protein	NA	NA	NA	NA
AZO74978.1\|6315611_6315950_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.6e-11	38.4
AZO74979.1\|6316002_6317001_+	hypothetical protein	NA	NA	NA	NA
AZO74980.1\|6317090_6319643_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.9e-61	46.8

DBSCAN-SWA_3

6682806 : 6691391

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO75314.1\|6682806_6685599_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.4e-96	31.1
AZO75315.1\|6685658_6685811_-	hypothetical protein	NA	NA	NA	NA
AZO75316.1\|6686015_6686516_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.0e-23	35.4
AZO75317.1\|6686534_6687125_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.7e-43	56.4
AZO75318.1\|6687155_6687668_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.8e-48	61.5
AZO76122.1\|6687680_6688130_+	DMT family transporter	NA	NA	NA	NA
AZO75319.1\|6688129_6689218_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AZO75320.1\|6689468_6690599_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.7e-99	53.5
AZO75321.1\|6690665_6691391_+	SDR family oxidoreductase	A0A2P0VP75	Tetraselmis_virus	1.3e-07	28.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034444

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection