CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034445	Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 chromosome, complete genome	5 crisprs	cas3,csa3,WYL,DEDDh	1	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034445_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034445_2

1984299-1984384

Orphan

Consensus_repeat	Method
CTTTGCCGAGGAGCTTACGGGTGGGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034445_2

>merge|CP034445|2|1984299-1984384|CRISPRCasFinder
CTTTGCCGAGGAGCTTACGGGTGGGGCAAAAAATTAGGTCCCCACCAGCGACGAGGCCTTTGCCGAGGAGCTTAAGGGTGGGGCAA

>CP034445|2|2|1984299-1984384|CRISPRCasFinder
CTTTGCCGAGGAGCTTACGGGTGGGGCAA	AAAATTAGGTCCCCACCAGCGACGAGGC
CTTTGCCGAGGAGCTTAAGGGTGGGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP034445.1\|AZO03287.1\|1977480_1978584_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
CP034445.1\|AZO03285.1\|1975863_1976211_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
CP034445.1\|AZO03286.1\|1976300_1977383_+\|Tat-pathway-signal-protein	unknown	unknown	gnl\|CDD\|236122
CP034445.1\|AZO07364.1\|1992230_1993148_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
CP034445.1\|AZO03299.1\|1990336_1991323_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP034445.1\|AZO03298.1\|1988602_1990213_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173882
CP034445.1\|AZO03294.1\|1984431_1985628_+\|UPF0261-family-protein	unknown	unknown	gnl\|CDD\|227728
CP034445.1\|AZO03292.1\|1981852_1983169_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
CP034445.1\|AZO03297.1\|1987074_1988268_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
CP034445.1\|AZO03291.1\|1980877_1981783_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP034445.1\|AZO03293.1\|1983562_1984219_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP034445.1\|AZO03296.1\|1986483_1986900_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225051
CP034445.1\|AZO03290.1\|1979916_1980876_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP034445.1\|AZO03300.1\|1991319_1992150_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
CP034445.1\|AZO03302.1\|1993985_1994492_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372958
CP034445.1\|AZO03289.1\|1979683_1979920_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO03288.1\|1978583_1979687_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
CP034445.1\|AZO03301.1\|1993144_1993921_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
CP034445.1\|AZO03295.1\|1985639_1986479_+\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
CP034445.1\|AZO03284.1\|1974446_1975742_-\|amidase	unknown	unknown	gnl\|CDD\|168315

Protein	Function_ID	Function_description	E-value
CP034445.1\|AZO03287.1\|1977480_1978584_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	9.46595e-153
CP034445.1\|AZO03285.1\|1975863_1976211_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	3.50134e-27
CP034445.1\|AZO03286.1\|1976300_1977383_+\|Tat-pathway-signal-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	4.46023e-17
CP034445.1\|AZO07364.1\|1992230_1993148_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	7.54902e-83
CP034445.1\|AZO03299.1\|1990336_1991323_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.13527e-107
CP034445.1\|AZO03298.1\|1988602_1990213_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173882	cd08517, PBP2_NikA_DppA_OppA_like_13, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP034445.1\|AZO03294.1\|1984431_1985628_+\|UPF0261-family-protein	gnl\|CDD\|227728	COG5441, COG5441, Uncharacterized conserved protein [Function unknown].	0
CP034445.1\|AZO03292.1\|1981852_1983169_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.89889e-41
CP034445.1\|AZO03297.1\|1987074_1988268_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	1.06484e-69
CP034445.1\|AZO03291.1\|1980877_1981783_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.30038e-80
CP034445.1\|AZO03293.1\|1983562_1984219_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.71544e-05
CP034445.1\|AZO03290.1\|1979916_1980876_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.43851e-72
CP034445.1\|AZO03300.1\|1991319_1992150_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.3484e-83
CP034445.1\|AZO03302.1\|1993985_1994492_+\|hypothetical-protein	gnl\|CDD\|372958	pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid hydrolase. This family of enzymes catalyzes the conversion of L-2-amino-delta2-thiazoline-4-carboxylic acid (L-ATC) to N-carbamoyl-L-cysteine. It cleaves the carbon-sulphur bond in the ring structure of L-ATC to produce N-carbamoyl-L-cysteine.	2.24088e-17
CP034445.1\|AZO03296.1\|1986483_1986900_+\|cupin-domain-containing-protein	gnl\|CDD\|225051	COG2140, COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only].	2.04655e-44
CP034445.1\|AZO03288.1\|1978583_1979687_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	2.87621e-157
CP034445.1\|AZO03301.1\|1993144_1993921_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	2.13105e-102
CP034445.1\|AZO03295.1\|1985639_1986479_+\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	2.26162e-171
CP034445.1\|AZO03284.1\|1974446_1975742_-\|amidase	gnl\|CDD\|168315	PRK05962, PRK05962, amidase; Validated.	0

>CP034445.1|AZO03293.1|1983562_1984219_-|TetR/AcrR-family-transcriptional-regulator
MDVSRQQAVAKDEVAQAPAVEKGARARTRRLMLETATRLMQSGMTPSVSEVAEAAEVSRATAYRYFPSQAALVQAVVDEGLGPILTWKSASDDAERRVADLFATAMPRIEAFEATFKAALKLSLDQWARRQAGTLGSEPAFTRGHRVDLLKDAIAPLKGRLKPRQFRRLAQALSLVFGVEVVTVLKDIWGLDSAEMMSVAQWAAGALVRAAMAESGPK
>CP034445.1|AZO03292.1|1981852_1983169_-|carbohydrate-ABC-transporter-substrate-binding-protein
MRKIVTSVLAGVGLALACGTSVHAQEKSLTIFWAEWDPANYLQELGNEYEKETGVKITVETTPWSDFQTKAFTEFNAHGDAYDLVVGDSQWLGAGSTGGHYVDLSDFFNKHKLNDVMAPATVKYYAEYPGNSGKYWAIPLEGDAVGWSYRKDWFEDPKEKEAFKAKYGYDLDVPKDFKALRDIAEFFYRPDQKKYGIAIYTDNSYDAMAMGFENALFSYGGELGDYTTYKVDGIVNSDKAVAALDAYKELYKFTPPGWAKSFFVEDNQAITENLAAMSMNYFAFFPSLINEASNPNAKNTGFFANPPGPNGDQFAALGGQGISIVSYSQKQDEAMKFLEWFIKDETQKKWAALGGYTCSAAVLKSAEFQNATPYNKAFYETMFKVKDFWAVPEYAELLQQLNQRVYPYMIGGQGTAKETLDALAADWNATFKKYGRVK
>CP034445.1|AZO03291.1|1980877_1981783_-|sugar-ABC-transporter-permease
MATTMITTLDRSSRAAARGLSDISIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASTNAPANFVGLQNYRDLLNDPYVWSNFAITAKYVIISVAGQLFVGFGVAMLLNRDIPMKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGLGTFEWLADPKMALYAVALTDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGSFYTFFRITLPLVAPILMIAVIFRTMEAFKTFDLAYILTSQPTAELISIRLYKMAFQEWQTGRSCAMAYIVLIMVLAITNIYVKYLNKVKER
>CP034445.1|AZO03290.1|1979916_1980876_-|carbohydrate-ABC-transporter-permease
MAAVRTSSEVAFNRIAIVGVLVVTIIFLAPIYWIASTAFKPRNLATTIPPTIVFQPEISPFVKLFTKRSQLRSPPTPEEYAAAPWWERVVFDGGEKIVRDGKGAVQWSGYPNRFMNSLIVAITSTVLAVGMGTFTAYGFSRFRVKGEADLLFFILSTRMLPPVVVAIPMFLMYRAVGLNDSHLGLIILYTAFNLSFSVWLMKGFIDEIPKEYEEAALVDGYTRMEAFFKIVLPEAATGIAATAVFCFITAWNEYAFALIMTNRRAQTAPPFIPSQVGAGLPDWTVIAAGTFLFLLPVAIFTFLLRNHLLRGMSFGAIRK
>CP034445.1|AZO03289.1|1979683_1979920_-|hypothetical-protein
MSFRAINEKYLEPGSQILMVLGIVALCQPWNMPLHTYGVTIILIGLIGFNVTSKIPREEQAGTGHGADQQAHNAGAQH
>CP034445.1|AZO03288.1|1978583_1979687_-|ABC-transporter-ATP-binding-protein
MTQIELRGVQKFFGAVQVIKDLNLKIDDNEFIVLLGQSGCGKTTTLRAIAGLETIDQGDILIDGKPVQHLKAADRDIAMVFQSFSLYPHMNVYENIAFPLRATRKSRSEIDTEVRSVAKTLQITDLINKKPSALSGGDMQRVAIGRALVRRPKAMLMDEPIGALDAKLREEMRAEIKRLHIKQGSTSIYVTHDQIEAMSLADRIVIMHEGVLQQVGTPDEVYSHPANLFVAQFVGSPVMNVAEAKVSENASAVSVTVGDAAAGFEFPRALLSQLNGHAGDQFTLGVRPEGVLVRREAAEGFLPVETQIVEPLGSFDIVDLKVGSSMLRARTKSGFVSGAGEKVYVRIDPSQTHFFDAASGKALGVRL
>CP034445.1|AZO03287.1|1977480_1978584_-|ABC-transporter-ATP-binding-protein
MAHIQLKNISKTFGNHTALSNLNLDIADGEFFVLLGETGAGKTTTLRMVAGLEKPTEGQVFIDGVDVADWGAAERDIALVLQQYSLYPRYTVRQNLEFPLKPKIRRLPDAEIKDRVARAARTLRIEHLLDRKTDRLSGGEMQRVSIGRAIVRKPRVFLMDEPLSALDAKLREALRTELKNLQMQLGATFLFVTHDQIEAMSMGDKVGVLNHGRIVQAGTPHEIYNNPRDTYVASFVGSPPMNLIDGKLVNDRAVMAPVNFELPLSTGAKSFGGGRTSGATDGRPLVFGIRPEDVHLESGAPVEARVHDVENHGVEKILTLRVGDTMLRATVPARTDIAIEQAVRFAWNPDKVVLFDKGSGVSLRHAG
>CP034445.1|AZO03286.1|1976300_1977383_+|Tat-pathway-signal-protein
MNRRTMLVGAGAALVAAGTGVAGWRSAVGSMAQYEVFAAGLRDRLTPDLGAIVRYATLAANSHNTQPWRFQLEGHAIEIRPDLQRRTPIVDPDDHHLYVSLGCAAANLMLAAAATGRTGEASLTADGNGIRYDYLMGEAKADPLANAIPKRQSTRAEYDGRATPAADLVELERAAAIPGVSLALVTDQGRMKQVRDLVLAGNEDQMNDPAFMHELKQWIRFNPRSAMARGDGLFSAASGSPVLPSGLGRIALDRLFSAAQENEKYARQIDSSAGVAIFFAERPDHDHWVRVGQACQRFALAATSLGLKLAFINQPVEVARLRADLAGIVGETRRPDIVMRFGYGPALPFSPRRPVASVVL
>CP034445.1|AZO03285.1|1975863_1976211_+|GFA-family-protein
MLYKGSCHCGKVAFEVKGEIGGAVRCNCSICARKGALLWAVPHEKLSLVAWGDDLGRYTFGKAQIAHRFCRTCGIHPFAEDVGESGERTAYININCLDDVDVAGIEVFEFDGRAA
>CP034445.1|AZO03284.1|1974446_1975742_-|amidase
MQSVRDRLETILSRLANRAAEERVYTKLYAAAARAAADASDARRKAGVSLGPLDGRIVSIKDLFDVAGEPTTAGSLILAGTAPATRDAAIVARLRRAGAVIVGKTNMTEFAFTAIGDNLHYGTPGNAADASLIPGGSSSGAGVAVGEGTSDISIGSDTGGSVRIPASLNGIVGFKPTAGRVPLTGAFPLSMTLDSIGPLARSVADCAIADAIMAADEPAALQPVPLATLRIGIPRGVLFGETQAEVAEAFEACIDRIGQAGAGAVDLPIDDLIAEMRAATRRGTIASMEGAEVHADWLASGASVPVDPHVTGPLSRALSVPASAYIRTIRRRGELATAMAERLEAVDVLALPTVPIVAPSIAAMAGDEALRDRTEGLLLRNTQVANQFDLCAISLPMPGTKLPAGLMLVGKHGHDRRLLAIAAVVEALLGR
>CP034445.1|AZO03294.1|1984431_1985628_+|UPF0261-family-protein
MKRIYVVGTADTKGEELAFLADAVAAAGGAVVRVDIGTRGATVPVDIPASEVAAHHPKGAGAVLGIDDRGAAVAGMGVAFAGFIRSRDDIAGMIGIGGGGGTSIVTAGMRALPLGLPKIMVSTLASGDTAPYVDVSDIIMMPSVTDMAGLNRLSRVVLHNAAQAIAGMAAKPAPIAAGKPALGLTMFGVTTPCVTAIVERLRADYDCMVFHATGTGGRSMEKLADSGLLAGVLDITTTEVCDLLFGGVLPATEDRFGAIARTKLPYVGSVGALDMVNFWAPPTIPDKYRGRLFYEHNPNVTLMRTTADECRRIGEWIGDRLARCDGPVRFLIPEKGVSALDIEGRAFFDAEADAALFDAIERTIEPTKDRTVTRLPLHINDPAFAKAAAEAFLDIARK
>CP034445.1|AZO03295.1|1985639_1986479_+|phosphoenolpyruvate-hydrolase-family-protein
MAAIPRKTILEKFRRMIADGVPIVGGGAGTGLSAKAEEAGGIDLIIIYNSGRYRMAGRGSAAGLLAYGNANEIVKEMAYEVLPVVKKTPVLAGVNGTDPFVIMPLLLSELKTMGFSGVQNFPTVGLFDGTMRQSFEETSMGFGLEVDMIAEAHQLDLLTTPYVFNPDEARAMTRAGADIVVAHMGVTTGGSIGATSAKTLDACVKEIDAIADAARSVREDVILLCHGGPISMPDDARYILERCEGLHGFYGASSMERLPAEAAIARQTADFKAIMKRKG
>CP034445.1|AZO03296.1|1986483_1986900_+|cupin-domain-containing-protein
MADKSKVFVYPKDVSAFGFDWGKLSLTVAPEVNGAERFSGGVVDLPSGKGHTRHNHPGAEEIIFVISGHGEQMVEDAKGNPVVAKVGPGCTIYVPESRFHSTLNTGDQPMQLFVVYSPTGPELVLRELPDFKLLPAGT
>CP034445.1|AZO03297.1|1987074_1988268_-|aminopeptidase-P-family-protein
MNIAPGKTEVSSIPFDQARVDRLMEEAGIDVLFATSKHNTQYLLGGYKFIFFAAMDAIGHSRYLPIVLYEKGGPEHAAYIGNKMEGGEHQNHPFWTPTLHAACWGTLDAANLAVEHLRQIGKSAARIGIEPGFLPSDAYMLIRKALPDAKLIDATGMLETMRATKTEAELEQLRIASELITDSMLATIAWAREGTSKTDIIERLRREETNRGAHFEYCLLTLGSSHNRAASSQAWKKGEVMSIDSGGNYHGYIGDLCRMGVLGEPDAELEDLLAEVEAVQQAAFSKVKAGTLGGDMIAHAEGVLKASKVAAYTDFFAHGMGLITHEAPFLMTNHPVAYEGTYAAKPLEKNMVLSVETTMLHPTRGFIKLEDTVAVTDSGYVMFGDRGRGWNRGGAAA
>CP034445.1|AZO03298.1|1988602_1990213_+|ABC-transporter-substrate-binding-protein
MSELTISRRGLLAGSALLLASNALPTIGFAQTPKKGGRLVLAADSEPRNLNPAIVASNGVFFISSKIVETLAEASFDAKDGLQPRLALSWEGAADGLSVSFKLRDGVRWHDGKPFTSADVAFSALQIWKPLQNLGRTVFKDLEAVDTPDELTAVFKFAKPTPFQLIRNALPALSSVVPKHVYENGKIEDNPANNAPVGTGPFKFAEYKAGQYYRLTRNDAYWGKDEPYLDEIVYQVLPDRTSAAAALEAEEIQLAAFSAVPLADLNRISKVPGLKVITKGYEGLTYQLVVEINHRRKELADLKARQAIAHAIDKDFVVKTIFLGYAATATGPVPKNDPQFYTADVPTYPFDVAKANALLDEAGYKRADDGKRFALKLLPAPYFNETKQFGDYLRQALAAIGIDAQIVNNDSAAHIKAVYTDHAFDLAVGPPVFRGDPAISTTILVQSGIPDGVPFSNQGGYKNAELDALIVKASETLDTSARTELYKEFQKKVAADLPLINVAEWSFISVARDTVGNIANNPRWAVSNWADTYLES
>CP034445.1|AZO03299.1|1990336_1991323_+|ABC-transporter-permease
MTRALTLLRRRLVGSLFVLLIVVIGSFLLLEAAPGDAVDAYIVSTGGDAGMIELLRHRWGLDQSELTRLANYLWALLHLDLGQSVTFSRPIRDVILERLPTTLVLMGSATALSFGLGSALGIYAGAAPGSFRDRFLSIGSLALYAVPGFWLGLVLIVVFAVDLRWLPIGGIETIASGKTGFSRAADIATHLVLPVSALGFIYLALYLRMMRAGMAEAWRQDFVLAARARGLPRRRVVLAHVARNALLPLVTMLGLQSAQMLGGSVVIESVFAVPGLGRLAQEAVAGRDTPLLLGIILVSAVLVVVINLLVDLAYAVLDPRVGAGEASA
>CP034445.1|AZO03300.1|1991319_1992150_+|ABC-transporter-permease
MNRLRRFLRTPEAIAGASILALLVVMALAAPMLFPGDPQAIAGPALLPPFQDWRLPLGTDRLGRDVLAELFHGARTSLAVGLAAAAAALLIGAVVGTLAGFAGGLIDEVLMRITDAFQTVPSFLLALAFVSIVGPSLGAVVAAIALSAWTGPARVARAEVLSIRERDYVAGARVIGMHPLEIAFREVLPNALPPVLALSSVIVAAAILTEAALSFLGLGDPNRVTWGGMIAEGRTVLRTAPFLSIVPGVALVLTVLGVHLAGEGVVESTAVRRSLS
>CP034445.1|AZO07364.1|1992230_1993148_+|ABC-transporter-ATP-binding-protein
MDVLEGERLAIIGESGSGKSTLALAVAGLLARGAEIGGRMDWSLPARVGAKAPLSGLPAISPSRGEIGSSVAGSHLATLKIGEGGDHDLISSPGEMSGRTKRGAKDRQPSAPATSHPLLGRDIGFVFQDPSSSLDPVMPVGKQIAEVARTHLDLTWREAIAKAKTLLERVRLPNPDATLHAYPHQLSGGQKQRVAIAAAIAAGPKLLIADEATSALDTIVQAEIVALIRRLVTEDGMTLIFVSHDIALAASLANRIAALRHGELVELGETSQIVNAPQHAYTRALLDAHLGLDAEPPLDRQGISA
>CP034445.1|AZO03301.1|1993144_1993921_+|ABC-transporter-ATP-binding-protein
MILLAVSNLTKRYHRGGKAFAAVDDVSFEIGPAETLALAGPSGSGKSTLARLVLRLVEPDTGRVDFEGGDFLALSGAALRARRARLQMVFQDPLAAFNPRATVARVLDDPLRIHNIAPRAARPRRIAALLERVGLDTGLAARAIHEISGGQRQRVAIARAIATRPSLIVLDEAVSALDVSVRGQILELLLDLQRRERIAYLFISHDLGVIRAVAHRVIILDAGRIAESGDARAVIANPQSPVGKALVEAAPRLNRNRP
>CP034445.1|AZO03302.1|1993985_1994492_+|hypothetical-protein
MTDPEAARAEKLSRELDSAFRNRADLYRLFLDELTAELGAEQAEAVMIRSIEKRGREVAAAAFAGFGPNDAPAIGEAFLAVSPDGGRMYPTDIERGPDHIAFKVKRCPLKDAWVEAGVGEEKLATLCRIAGAFDRGLFEATGVRFANVTWTPGHGSGCCHIALTNRDA

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Crispr_ID: CP034445_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034445_3

2433807-2433945

Orphan

Consensus_repeat	Method
CCGCAGCCGAAGGCGAGGACGCGCAATCAGGAAACCGTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034445_3

>merge|CP034445|3|2433807-2433945|CRISPRCasFinder
CCGCAGCCGAAGGCGAGGACGCGCAATCAGGAAACCGTCCGCTCAGTTCATCGTTGGAATGACGAACTCCGCGCCGTCCTTGATGCCCGCCAGCGCGCCCGCAGCCGAAGGCGAGGACGCGCAAGCAGGAAACCGTCCG

>CP034445|3|3|2433807-2433945|CRISPRCasFinder
CCGCAGCCGAAGGCGAGGACGCGCAATCAGGAAACCGTCCG	CTCAGTTCATCGTTGGAATGACGAACTCCGCGCCGTCCTTGATGCCCGCCAGCGCGC
CCGCAGCCGAAGGCGAGGACGCGCAAGCAGGAAACCGTCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP034445.1\|AZO03679.1\|2431699_2432017_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO03678.1\|2429963_2430899_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
CP034445.1\|AZO03686.1\|2437507_2437948_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153095
CP034445.1\|AZO03690.1\|2443033_2443549_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
CP034445.1\|AZO03685.1\|2436701_2437274_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO03680.1\|2432282_2432660_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
CP034445.1\|AZO03687.1\|2437944_2440107_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
CP034445.1\|AZO03683.1\|2435609_2435837_+\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO07389.1\|2428640_2429864_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP034445.1\|AZO03682.1\|2433946_2435443_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
CP034445.1\|AZO03688.1\|2440150_2441413_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
CP034445.1\|AZO03676.1\|2426650_2427532_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP034445.1\|AZO03675.1\|2426084_2426471_-\|ectoine-synthase	unknown	unknown	gnl\|CDD\|183953
CP034445.1\|AZO07390.1\|2431012_2431672_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP034445.1\|AZO03674.1\|2424764_2425667_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182689
CP034445.1\|AZO03684.1\|2435823_2436705_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP034445.1\|AZO03691.1\|2443590_2444781_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|225416
CP034445.1\|AZO03689.1\|2441501_2442650_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
CP034445.1\|AZO03677.1\|2427563_2428565_-\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|184428
CP034445.1\|AZO03681.1\|2433171_2433474_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034445.1\|AZO03678.1\|2429963_2430899_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	6.83035e-91
CP034445.1\|AZO03686.1\|2437507_2437948_+\|hypothetical-protein	gnl\|CDD\|153095	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.	1.25943e-30
CP034445.1\|AZO03690.1\|2443033_2443549_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	5.75501e-80
CP034445.1\|AZO03680.1\|2432282_2432660_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	1.20009e-35
CP034445.1\|AZO03687.1\|2437944_2440107_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	3.32057e-34
CP034445.1\|AZO03689.1\|2441501_2442650_-\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	1.56453e-137
CP034445.1\|AZO07389.1\|2428640_2429864_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.42133e-54
CP034445.1\|AZO03682.1\|2433946_2435443_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
CP034445.1\|AZO03688.1\|2440150_2441413_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
CP034445.1\|AZO03676.1\|2426650_2427532_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	4.39586e-79
CP034445.1\|AZO03675.1\|2426084_2426471_-\|ectoine-synthase	gnl\|CDD\|183953	PRK13290, ectC, L-ectoine synthase; Reviewed.	4.72007e-59
CP034445.1\|AZO07390.1\|2431012_2431672_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.08644e-31
CP034445.1\|AZO03674.1\|2424764_2425667_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	6.06747e-90
CP034445.1\|AZO03684.1\|2435823_2436705_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.75725e-40
CP034445.1\|AZO03691.1\|2443590_2444781_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|225416	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown].	5.94214e-107
CP034445.1\|AZO03677.1\|2427563_2428565_-\|4-hydroxyproline-epimerase	gnl\|CDD\|184428	PRK13971, PRK13971, 4-hydroxyproline epimerase.	0

>CP034445.1|AZO03681.1|2433171_2433474_-|hypothetical-protein
MTRFVVAAMLATAAITLGAAPASAAAQCAARADIIKALGDKFHETEAGRGLINPNVVLEIFVSDQGSWTVLASDTKGQSCVLSVGEGWDSPTIRAAMPGA
>CP034445.1|AZO03680.1|2432282_2432660_-|MarR-family-transcriptional-regulator
MTRTDKKVRYLPESEPELLTPSSGAIGVENVLRILEGRWKLVILFHLFGGKVLRFSDLERAIPAISQKMLIQQLRQMEADGIVRRIVHHQVPPKVEYCLTDWGQALCPALDALLKWAARKEPAEG
>CP034445.1|AZO03679.1|2431699_2432017_-|hypothetical-protein
MARDFSFKWIMLVAVGALMAISAVPARAQIICGGHNYLVARLAEAFEEKRLGYGVAGQVAIFEVFVSASGTWTILMTDVKGQSCILAAGEGWEDTLATAVGQPGG
>CP034445.1|AZO07390.1|2431012_2431672_+|GntR-family-transcriptional-regulator
MISADANAPFEPAATKAYRALEHMIVTLELAPSSFVTEGALIDRLGLGRTPVREAIQRLAWEGLLDIRPRAGIAVAPLHAGDWLRVLDARRGIEVVLARSAARFVTREAADLFHEAALAMQKAVISGNVLAFIQADKALDEALAIAADNPFAARVAAPLQSHSRRFWFRYKADTGLAESAEHHVALIRSILDGDEEGAAKDAKKLMALLRGHAEVAATR
>CP034445.1|AZO03678.1|2429963_2430899_-|dihydrodipicolinate-synthase-family-protein
MWTGVFPAVTTKFTADDRLDHAEMERCYSLQMEAGCDGIIVCGSLGEGPMLSPDEKIEVLKTAQKVAGKKPVLLTVNEPGTREAASIAKRAAREGADGLMVVPSPIYHTNPEETVAALRAVAEAGDLPVMIYSNRLAYRVDVTVDLMEELATDKRFVAIKESSDDIRRSTEIINRFGDRYDLFTGVDNLAFEALSVGAIGWVAGLVTAFPRETVAIYQLMRQGRREEALAIYRWFRPLLDLDVSTYLVQNIKLAEVLAIGTNDRMRMPRQPLSGERRKAVEKVVRDALAVRPTLPSLQTSPRSTDRLVAAE
>CP034445.1|AZO07389.1|2428640_2429864_-|FAD-binding-oxidoreductase
MAIIGGGIIGICAATLLAEAGRSVIVFDRTGVCEETSSGNAAAFAFSDVLPLAHKGMIRQLPKWLADPLGPLAIPPAYLPKLLPWLIRFWRAGAAKHYETSLATQAGMMKLAEAEWMGLLDRSGTRPMLREDGSLEFYESEAEFRASLRGWAERQRFGIGFRHVEGEEMAALQPGLSPRFVKGTFVPGWKTVADPKLLGKAVWTYAEKLGARFEHARVERVESGANGPTIVLADGTRRTASKLVIAAGAWSHLLAKNLGERIPLETERGYNTTLPASAFDVKRQLIFSGHGFVITPLQTGLRVGGAVELGGIDRPPNFARSKAMLEKAKRFLPGLDPSGGREWMGYRPSLPDSLPVIGAARAPNVYYAFGHGHLGLTQSAATGRLIRDLILGQTPPLDLTPFRAQRF
>CP034445.1|AZO03677.1|2427563_2428565_-|4-hydroxyproline-epimerase
MAKKSFFCIDGHTCGNPVRLVAGGGPLLQGSTMMERRAHFLAEYDWIRTGLMFEPRGHDVMSGSILYPPTRDDCDIAILFIETSGCLPMCGHGTIGTVTMAIEHGLVKPKTPGVLRLDTPAGLVIAEYKQVGEYVEEVRITNVPSFLYAEGLTVECPVLGEISVDVAYGGNFYAIVEPQKNYRDMADYTAGDLIAWSPVVRQRLNEKYSFVHPENPGINRLSHMLWTGKPRNAEADARNAVFYGDKAIDRSPCGTGTSARMAQLHAKGKLKEGDSFVHESIIGSLFKGRVEKEVSVAGKPAIIPSIGGWARMTGLNTIFIDDRDPFAHGFIVT
>CP034445.1|AZO03676.1|2426650_2427532_+|LysR-family-transcriptional-regulator
MDYLPLNAIRAFEATARHLSFSAAGEELHVTHPAISHQIRRLEEWLGVALFHRDARKVRLTEAGLILQASASAALAELGATCRRIRRSAAQASLSVGCIPSIASRWLVPRLSDFTARHPEIAIRVAYAKAEDRLEDDHDILITLGADPSPHVTSLKLFSRISRPACSPHYLARKGRLETAAAIAAADLLHDETRQGWQEWFSKSGVEERDVGSGPVFADFNILATAVIAGHGVALCPVEVFREELRRGDLVVLSDVSTDDDKGYFLTMSAQPSSAEARFAEWFRDQVSVKAEA
>CP034445.1|AZO03675.1|2426084_2426471_-|ectoine-synthase
MFTRQLADVEKTDFFVDWGNGTSHRLLTSHDGMGFTICHTVVRAGSESRLQYRRHLEACYCISGTGEVEDMTGTVHRVEPGTVYVLDAHDDHFLRADSAGDMVLVSVFNPPLKGTEKHNLNGEGGSAY
>CP034445.1|AZO03674.1|2424764_2425667_-|branched-chain-amino-acid-ABC-transporter-permease
MQYFVQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMVGAFTALIVFLILGALFYSVPVVVALLIMMIVAMLLTSLYNWTIEKVAYRPLRGSFRLAPLITAIGMSIALSNFVQVTQGPRNKPIPPLVSQVYTIDGISISLKQIIIVIVTIALLAVFWYLVNRTALGRAQRACEQDRKMAALLGIDVDRTISITFIMGAALAAVAGTLFLMYYGVVVFSDGFVPGVKAFTAAVLGGIGSLPGAVLGGLLIGFIESMWSAYFSIDYKDVAAFSILAIVLIFLPSGILGRPEVEKV
>CP034445.1|AZO03682.1|2433946_2435443_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MIEYGHFIGGKRVAGTSGRKQDVMQPMDGSVRGTVALASQAELRAAVENAKAAQPKWAATNPQRRVRVLMKFLELVARDYDELADILAREHGKTIADARGDIQRGLEVVEVCIGAPHMMKGEYTDGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPLWKIAPAIACGNAFILKPSERDPGVPLRIAELFIEAGLPEGVLNVVNGDKEVVDAILDDPDIKAIGFVGSTPIAHYIYSRGTASGKRVQCFGGAKNHMIIMPDADMDQTVDALIGAGYGSAGERCMAISVAVPVGNDTANRLMEKLVPRVESLKVGPSTDSSADFGPLVTAQALERVKGYVDIGVKEGANLVVDGRGFKMQGYENGYYMGGCLFDNVTADMRIYKEEIFGPVLSVVRAPRYEDAIKLANDHEMGNGVAIFTRDGDAARDFASRVQVGMVGVNVPIPVPIAYYTFGGWKASSFGDLNQHGPDAFRFYTKTKTVTSRWPSGIKDGAEFVIPTMN
>CP034445.1|AZO03683.1|2435609_2435837_+|hypothetical-protein
MSSFAPPSVLPDISPTWGEISSFAAGTISCNAGDWRKPARHPISPLVGEMSGRTEGGATERGLGCYHQDHPHELG
>CP034445.1|AZO03684.1|2435823_2436705_+|LysR-family-transcriptional-regulator
MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEEALRTKLFRRLTTGSELTPAGERFLDIAERMEGDMIAARSTIAGEGDDVSGTVRIGAPDGFGVAFLAKRLGELTAQHRELTIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDYTLGLFASRAYAEANGLPKTPAELARHTLIGYVPDLIVSPSLDYAAEFSPEWRTSFAISSALGQAEAVRSGAGIGILHTFVARSMPELVPVDIVAPIRRAYWLVYHESVRPLRRVQLVANFITKAVERERGLFA
>CP034445.1|AZO03685.1|2436701_2437274_-|hypothetical-protein
MRLFPVAATAYLACAAAALAADKTFHDREHGFSLTYPEEWASETAFDNTIRLKLKSGEKGLTCRVSQNAYDPTAPDNPPDVRAFMEKDWQMSNWQTTVGVAYQSASFSQDRLAHFADGYPVRIADMDFHYADDNVSFYGHSRIALTLRSSHYGFIDCGVTGDSADEATRKWAPLADQADKIVSSFVLDAD
>CP034445.1|AZO03686.1|2437507_2437948_+|hypothetical-protein
MRAVLAILPLLFLSDCANPWAKVPEAELPKPVRYAMSRPSPFVIGNYCGPGTRTGDLSARPVDRLDAACRVHDACYIARHNHCDCDGELVASARKIRDDRTAPRKMRNEAELLIATFAFPVCRIFPQGFLPPRDPAELKAVSGAAG
>CP034445.1|AZO03687.1|2437944_2440107_+|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MSLGSAVAKALLGLALTVLAGCAGMPGHSACAFFPGDDACDRLPVSADSTGAGIATAHYFASDGNSAYEKRFQALLAQSRLDALDRANGTGRFGRDWRDVQNSGFHATYPALQGLARPLDDTELAPTPGKPGQAHFAGRWRMSRQTLYLDAAARPSAPKTFSFSGLQARSVEIVLRQAGQQPVDIGGTCNGRLAIRAPGRSMTVAAAAPFHLSLPVAETSVSLFPDQALTRCDLRVGSALAPAGAPLTLLREETADPWITALDSRYDRCPVPDPAGMEELDRVFYASRWLSQTCALPLGSPTLLRKSRDGFNAKVEALLGKRLPDSAFDKADPELPLDFSHAPKLRLIYLSSLEFKADFSGRVMERLIRHHAALGTKVRILVTDVLEREKDDAMLHRLASEFPNVELQEYRWQADHGAPFDEQISQLHKTHHVKMLATLAEQPGRSRVIIGGRNIHDGFLFHRPVDLTRYPDLEQYGKTDGFSLNYYSNWSDFDMEIADPATVETLAAHLSTIWLRDADTNLSRPFSIPVRSRAAPRGVARHFISVPYEDGHALEAYFVELIDTAEHRIEIVNPYLNLTPDIARAFDGALARGVKIDVVGRIDLKGDIGGRFLTALNKLFVEKYGDRIDIREFKAPDVVLHSKIMMIDERLVAISSVNLNNRSFFHDSENGMVVLDPAFYARMKPIYQDYVAHSRPVATNVTIGWAYRLLFSDNWVREAF
>CP034445.1|AZO03688.1|2440150_2441413_-|D-amino-acid-dehydrogenase
MKVIVLGGGVIGVTTAYFLTEAGHEVTVYDRQPGPALETSFANAGEVSPGYASPWAGPGVPIKAVKWLLTKYGPLVVRPAFDPNMWTWLLKMLRNCTAERYALNKSRMVPLAEYSRDTLKALREATGITYDERAKGTLQLFRKQKQLDGTGGDVEVLKKYGVPYEILDRDGCVAAEPALAAVRDKLVGGLRLPGDETGDCKMFTDKLAELCVARGVTFEYGSTIRKVVRNRNRLTNVLTDSGWKSADAFVMALGSYSAQFMRKLGRPIPVYPVKGYSITVPITNAEAAPVSTVMDETYKVAITRLGDRIRVGGTAEISGYDLRLHESRRRTLEHSVGDLFPGGGDLKAASFWCGLRPMTPDGPPLVGLSEVANLYLNTGHGTLGWTMACGSAKVLADIMSNRVPEINARDLSPERYLKPI
>CP034445.1|AZO03689.1|2441501_2442650_-|alanine-racemase
MSDAEVTSLQTVAANGSTVSEAAAGAILTIDLGAIRENYRRLKARLGGVRCAGVLKADGYGLGAAQVASALAKEGCDIFFVALPDEGIALRNAIGPGPDIFVLNGLPPGSEPEAQAAGLCPVVNSAVQLKAWRQAARSAGRSLPAAIQVDSGMARLGMAPTDVEAVAGEAGAFDGIDIRFVMSHLARADEPQQAANEKQRHEFDRLRKMLPAAPASLANSSGIFLGPAYHYDLARPGAALYGVNPTPHEANPMLPVIRLEAKVAQTREIGAGTGIGYGHTHQADGPLRLATISLGYGDGWHRRAASAAWFEGVRLPFVGRVSMDSIILDISALPAGRLGEGDLVELIGPSQSVDDAAGHAGTIGYEILTSLGTRFHRRYVGA
>CP034445.1|AZO03690.1|2443033_2443549_-|RNA-pyrophosphohydrolase
MAKTIDPETLPYRPCVGLMILNRAGLVWVGHRIAEPDSEFAGTTQLWQMPQGGIDKGEEPIEAAGRELYEETGMRSVSLLAEAPRWINYDLPPHLVGVAFKGRYRGQTQKWFAYRFEGDESEIAINPPPGGHTAEFDEWAWRPMRELPELIVPFKRKVYEQVVAAFQHLTR
>CP034445.1|AZO03691.1|2443590_2444781_-|divergent-polysaccharide-deacetylase-family-protein
MADIGKDIERPLGQKLQPKRRASRGISGGTLAAVLAVLAVIGVSGAIALRDKPFRKPQDVAVSTPKVVAAPTTPAPPAAPAPVAAATPQASTPMKSGGPQIIHVQTEEGDSPPKAAIVIRDPSTLGQNLKVAHIPDGALIEASETGPLPMRSADGRRPFDVYARPWSGARGARVAIVIGGLAVSQTGTQAAIAKLPAEVTLAFAPQGNSIGRWMQAARQSGHEIVMQVPLEPFDYPNVNPGRNTLTVSASADENLKSLHWALSRTTNYTGVMNYMGARFSADASAMEPFMAELGKRGLAYIDDGSSSRSVAPDLALKDGMPFVAGDMAIDAVQDRGEILKKLDSLEATARAKGSAVGIGSAFDITVDTVTSWIAEAKKRGIEIVPISAVAIDPQKG

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Crispr_ID: CP034445_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034445_4

3331289-3331633

Orphan

Consensus_repeat	Method
AACGGCAACGGCAANGGCAAC	CRT

6 spacers

The CRISPR arrays of CP034445_4

>merge|CP034445|4|3331289-3331633|CRT
ATCGGCAGCGGCAATGGCAACGGCAATGGCAATGTCGGCGTCGGCAACGGCAACGGCAATGGCAACGCCAATACCGGCGCCTACAACGGCAACTTCAACGGCAATGGCAACTTCGGCTTCGGCAACGGCAACGGCAACGGCAATGCGAATATGGGCGCCTTCAACGGCAACTATAACGGCAACCTGAATGCCGGCGTCGCGAACGGCAATGGCAACGGCAACGGCAATTTCGGCCTCGGCAACGGCAACGTGAACGGCAACGGGAACTGGGGCTTCGGAAACGGCAATGCCAACGGCAACGGCAACTGGGGCGCCGGCAACGGCAACGGAAACGGCAACGCCAAC

>CP034445|4|1|3331289-3331633|CRT
ATCGGCAGCGGCAATGGCAAC	GGCAATGGCAATGTCGGCGTCGGC
AACGGCAACGGCAATGGCAAC	GCCAATACCGGCGCCTACAACGGC
AACTTCAACGGCAATGGCAAC	TTCGGCTTCGGCAACGGC
AACGGCAACGGCAATGCGAAT	ATGGGCGCCTTCAACGGCAACTATAACGGCAACCTGAATGCCGGCGTCGCG
AACGGCAATGGCAACGGCAAC	GGCAATTTCGGCCTCGGCAACGGCAACGTGAACGGCAACGGGAACTGGGGCTTCGGA
AACGGCAATGCCAACGGCAAC	GGCAACTGGGGCGCCGGCAACGGC
AACGGAAACGGCAACGCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP034445.1\|AZO04375.1\|3324985_3326020_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|236193
CP034445.1\|AZO04376.1\|3326095_3326797_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO04373.1\|3322217_3323006_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
CP034445.1\|AZO04383.1\|3332835_3333543_-\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|273917
CP034445.1\|AZO04380.1\|3330264_3331086_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP034445.1\|AZO04388.1\|3338021_3338498_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP034445.1\|AZO04374.1\|3323610_3324810_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
CP034445.1\|AZO04387.1\|3337048_3337882_-\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|130334
CP034445.1\|AZO04390.1\|3340203_3341097_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
CP034445.1\|AZO04386.1\|3336490_3336913_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP034445.1\|AZO04382.1\|3331869_3332316_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO04379.1\|3328300_3329146_+\|LOG-family-protein	unknown	unknown	gnl\|CDD\|224527
CP034445.1\|AZO04378.1\|3327302_3328157_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
CP034445.1\|AZO04385.1\|3334899_3336339_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
CP034445.1\|AZO07442.1\|3329258_3329861_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
CP034445.1\|AZO04389.1\|3338609_3340160_+\|magnesium-protoporphyrin-IX-monomethyl-ester-anaerobic-oxidative-cyclase	unknown	unknown	gnl\|CDD\|131081
CP034445.1\|AZO04391.1\|3341652_3342192_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|105710
CP034445.1\|AZO04384.1\|3333692_3334454_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP034445.1\|AZO07441.1\|3323002_3323608_-\|transporter	unknown	unknown	unknown
CP034445.1\|AZO04377.1\|3326804_3327194_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540

Protein	Function_ID	Function_description	E-value
CP034445.1\|AZO04375.1\|3324985_3326020_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|236193	PRK08229, PRK08229, 2-dehydropantoate 2-reductase; Provisional.	7.91589e-144
CP034445.1\|AZO04388.1\|3338021_3338498_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.42861e-46
CP034445.1\|AZO04373.1\|3322217_3323006_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.58232e-132
CP034445.1\|AZO04383.1\|3332835_3333543_-\|pyrimidine-5'-nucleotidase	gnl\|CDD\|273917	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase. This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).	1.30266e-84
CP034445.1\|AZO04380.1\|3330264_3331086_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.52557e-51
CP034445.1\|AZO04391.1\|3341652_3342192_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|105710	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional.	1.12541e-100
CP034445.1\|AZO04374.1\|3323610_3324810_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP034445.1\|AZO04387.1\|3337048_3337882_-\|phenylalanine-4-monooxygenase	gnl\|CDD\|130334	TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric form. This model describes the smaller, monomeric form of phenylalanine-4-hydroxylase, as found in a small number of Gram-negative bacteria. The enzyme irreversibly converts phenylalanine to tryosine and is known to be the rate-limiting step in phenylalanine catabolism in some systems. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase. [Energy metabolism, Amino acids and amines].	1.17084e-137
CP034445.1\|AZO04390.1\|3340203_3341097_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.19099e-157
CP034445.1\|AZO04386.1\|3336490_3336913_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.31103e-15
CP034445.1\|AZO04379.1\|3328300_3329146_+\|LOG-family-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.69721e-63
CP034445.1\|AZO04378.1\|3327302_3328157_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
CP034445.1\|AZO07442.1\|3329258_3329861_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.64919e-55
CP034445.1\|AZO04385.1\|3334899_3336339_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	3.19439e-68
CP034445.1\|AZO04384.1\|3333692_3334454_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.87166e-49
CP034445.1\|AZO04389.1\|3338609_3340160_+\|magnesium-protoporphyrin-IX-monomethyl-ester-anaerobic-oxidative-cyclase	gnl\|CDD\|131081	TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model represents the cobalamin-dependent oxidative cyclase, a radical SAM enzyme responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.	3.34192e-174
CP034445.1\|AZO04377.1\|3326804_3327194_-\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	7.56542e-16

>CP034445.1|AZO04380.1|3330264_3331086_-|sensor-histidine-kinase
MSGKVEAIRKKLTGIKASGGCILLGHSCLFSPTRGWLATLATAMGRERLMWAGMTTGKDDRALRRRLARRLIAVQEEQRLRLSRELHDDLGQMLASVALELHNVRAGTQEMDGRLERAAMLIDRLSAKVHDAAWNLRPADLDRLGLRASVEDLATMLCSQLGIPCEMDLDALSNPLPAETALTLYRVAQEALTNIGKHAQPSRVSVTAHIQDDRMRLTIEDDGRGFDGRADPGPGHLGLAGMRERLALVGGELTVESATMKGTTVYADVPLAH
>CP034445.1|AZO07442.1|3329258_3329861_-|response-regulator-transcription-factor
MLSGVGAMINSQDDLTVVGLAGNAEDALEGIGKTLPDIAVVDISLPGDSGVVLIERLGERFPEVSCIALTAHEDPGCLRQVLAAGGRGFVVKRSTATDLLQAIRCVLAGDNYVDPALAARILSPRSAPQGDPGNLSQRERSVIQLVALGYSNKEISSRLNLSIKTIETYRTRASEKLELRSRAAIVRFAHSNGWLAELPV
>CP034445.1|AZO04379.1|3328300_3329146_+|LOG-family-protein
MTPMEKAGWTPLPHSDEDLERAKSVPDTPQTRAETYRLAWNDPDFMTRRELRAVRLQLELLKPEMILAERGIRSTVILFGGARLPEPGGEAWAAKNETQKKNLEANSKYYEEARKFARLCSQQSATSYYREYVVVTGGGPGVMEAGNRGADDVGAPSIGLNIVLPHEQAPNAYVTPELCFNFHYFAIRKMHFVMRAKAVAVFPGGFGTMDEFFETLTLIQTGRMERVPVILFGKAFWRRVIDLDFLAEQGTISPGDQDIIDFVDTAEEAWEIIRRFYKLGE
>CP034445.1|AZO04378.1|3327302_3328157_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSKPDLASLETTIEKAFEERDTISTATRGETRDAIQSALDLLDRGVARVAERRDDGTWHVNQWLKKAVLLSFRLNPMEIIKGGPGQAVWWDKVPSKFDGWSAVDFEKAGFRAVPSSIVRRSAYVAPGAVLMPSFVNVGAYVDSGTMVDTWASVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFLGQSTKIVDRATGEVFYGEVPPNSVVVAGSMPGKNFPNNEPGPSLYCAVIVKRVDAKTRSKTSINELLRD
>CP034445.1|AZO04377.1|3326804_3327194_-|DUF805-domain-containing-protein
MTERTRLSERSQFLWLFFSLSGRLSPVAYALAGVLLVLVQFFPFYQFARVELNTTASQNWAMICWGVLLISAWATFAVTAKRFHDFGKPTYFALISLIIGPILLIILSCFRSDPGPNRYGRRTNAPADS
>CP034445.1|AZO04376.1|3326095_3326797_-|hypothetical-protein
MRYRALDPQLIIETAERLEGRIGERFPDAGLRGVAAELVSLSRDLAKAARELETPIWWLRGVIIAAFIAGVAVFLFVGTILPLDRISGADDAVQSMQGIEATINTVILAALGLLALVRTEERIKRKKVFRQLHGLRSLIHVIDMHQLTKDPAALSADFKPTAHSPARMTNAADLARYLDYCSEMLSIAGKVAALFAQSVNDDVVIDGVNDIENLSSNLSRKIWQKITLIEGRR
>CP034445.1|AZO04375.1|3324985_3326020_+|2-dehydropantoate-2-reductase
MASETSTIAIAGAGSIGCYVGGCLALAGRKVVFLGRGRVVEAMRESGLRVSDLDGRDRRIEAQAISATVDPAIALADADVILVTVKSGATGEMAKLIAAHGRPDAVVVSLQNGVDNADRLRDALPGRRVLTGMVMFNVVQSADGELPFRIHRASQGEVMIDDGVDGLAELLDVDGLAVEARADMKAVQWSKLLMNLNNALVALSDLPLASQLADRIWRVILAAQIDEALAAMRAAGIAPARITGLPPALLPKVLRLPDWLFGLLARRMLAIGPQARSSMWDDLKRGRPTEIDELQGAVIRLARQAGIPAPMNERVAALVRQAEAEKRGPPGLGPDAVSAIPGKV
>CP034445.1|AZO04374.1|3323610_3324810_-|succinyl-diaminopimelate-desuccinylase
MTLPTDPAANLAALIRCPSVTPAEGGALAALGDMLKPLGFSVERPVFSEDGTPDIENLYARRSGNGPHLMFAGHTDVVPVGDESAWTHPPFAAEIAKGEMYGRGAVDMKGGIACFIAAVARHVEKNGGPKGSVSLLITGDEEGPAINGTTKLLDWAAAKGEKWDASIVGEPTNPDTLGDMIKIGRRGSLSGTVTVNGRQGHAAYPQLADNPVRGLMSLVDALLHPVFDKGTKDFQPTNLEVTSIDVGNPATNVIPAKATATFNIRFNDTWDAETIQAEIHNRLDQAAGRKKYRPGKKTPVDYELVWRDRPSHVFLTRDDRLIDTLSSSVKAVVGRTPALSTSGGTSDARFIKDYCPVVEFGLVGKSMHMVDERVALADLETLTQIYERFIEDWFAKGLS
>CP034445.1|AZO07441.1|3323002_3323608_-|transporter
MLSADETYASLVGAWRLMFGKADGLRLLDLSADGFWNSFYAIVVAAPALIVGWVGIANEIGDPEAFAGRLGMLIRLATVDIGSWVLPLVALALVAPRAGIGGRFVHYVVASNWASAIIAWLMLPSALLRLFLPSTSEISSLVSLFLFALSALLTWRMTNASIGKGAAVGTAVFVGMFIASLLVLFGLQALLGIDIPDSTTG
>CP034445.1|AZO04373.1|3322217_3323006_+|tRNA-pseudouridine(38-40)-synthase-TruA
MPRFRLDIEYDGSQFAGWQHQVDQPSVQQAIEQAIEKFCGEDVRIRAAGRTDAGVHATAQVAHVDLAKAWPGDKVRDAVNAHLQAVGARVAILKAAVVADDFDARFSATGRHYLYRILNRRAPPALEKGKVWWVPKRLDAEAMHEAAKVLLGKHDFTTFRSTQCQAESPVRTLDRLEVSRDGDFIEVRSSARSFLHNQVRSMVGSLRRVGDGSWGAADLKAALEARDRAACGQVAPPDGLFLVGVDYPETPGKFTIAGDADT
>CP034445.1|AZO04382.1|3331869_3332316_-|hypothetical-protein
MISGRSSAIPPTVEVAVEGAGIAVAVERPAVEVAIAGADVAVAVIFAGVAVAVEGADVAVAARRRGVVVAVERADIAGTAVEGADIAGAAVLVAEITAEVAERIHAPDVRADSLAVFADRRLDGRLAEGLAARRCVGLRCGCAQQPQA
>CP034445.1|AZO04383.1|3332835_3333543_-|pyrimidine-5'-nucleotidase
MTMTPDPSRFAHVTDWVFDLDNTLYPHHSNLFAQIDVKMTAYVGELLTLSRDDARKLQKELYLEYGTTLNGLMKRHGIDPDDFLEKVHDIDYSRLVPDPVLGAAIRQLPGRKFIFTNGDRRHAERTARQLGILEHFDAIFDIVAAGLNPKPERQTYERFAELHSVTGHNAVMFEDLARNLAVPKSLGMTTVLVVPRNFEPTFSEIWERDPANDDDVDFVTDDLAGFLTTIVDVVA
>CP034445.1|AZO04384.1|3333692_3334454_+|GGDEF-domain-containing-protein
MSRIFLKAATVAFASVAVSLLLTLIVVPAIGFPMSRTIWLASTLCPLVLAWAASAGSFWHSDRLQNAHRELARAHAQLAAAHRRLSEKASRDDMTGMLNRETFFAALDGSRRKSDRGALLIIDADHFKRINDSYGHLTGDEALLLIAGAIERGVRNGDVLGRIGGEEFAAFLIGAGEREAKHVAERIRREVELIRFRPSDGRTVPLTVSIGGISCGEGATVSDLMRAADRRLYEAKNRGRNLTILDRELPEAA
>CP034445.1|AZO04385.1|3334899_3336339_+|GMC-family-oxidoreductase
MIFDSYEAYKQAGFKPKACILGSGPAGTTIARKLGAAGIPVVVLEAGSREFSDESQDFYRGKTVGDFYFDLDITRLRFMGGSSNHWAGWCRVLDSQDFEPKAWAPDTGWPISRADIEPYLGEVHDILELPDFRPDVPVSEDICWVQLIKSPAVRFGEKFADELDRSKNIAVVLNTYATELTGDGKRVTGAKLWSNGQVAGAFSADYFVTCTGGLENSRLLLWSNERSNGGVVPNAAALGRYWMEHPTFEGGNAILASYSEFEVDASNEAFFSPTLAAMERLQIMNFGIRLIESPYPNVKKLIADLACTAPNMAEWMSSQLDQRLRCAAQLYVAWEQAPLASNQVELSKTDVDHAGVPRIELHWKKSPLERRTLLEGLKLFGTTLAQKNLGRVRIDDWISNGGDYPTNEETAGHHHMGGTRMGTDVFKSVVDANCKVHGMDNLYVGGSSVFCTSGQCNPTTTITALACRLGEHLGKLIAV
>CP034445.1|AZO04386.1|3336490_3336913_+|MarR-family-transcriptional-regulator
MRWQDATQAYDEAVGARLGLIAAERHCLGLLYAGPQSAGAVAAATGLTPAAVTALIDRLEARGYVTRARSLEDRRKVVIEATELTRELSERYYGTIAREGEKLVASFSDAELATVLRFINAALDLQSEQLARIKAEPNKA
>CP034445.1|AZO04387.1|3337048_3337882_-|phenylalanine-4-monooxygenase
MTISVADYAAECAAQGLRGDYSVCRGDFTVAQGYDYSAEEQAVWRTLCDRQTKLTQKLAHRSYLDGVAALGLLDRIPDFDAVSEKLSKLTGWEIVAVPGLIPAGPFFDHLANRRFPVTNWLRTKKELDYIVEPDMFHDFFGHVPILTQPVFADFMQMYGEKAEDMIALGGDEMITRLYWYSAEYGLIQEPGQPVKAFGAGLMSSFTELQFAVESKDAHHVRFDLETVMRTGYEIDKFQRAYFVLPSFDALRDAFANGDLAGIVARFKGRPALDPSMV
>CP034445.1|AZO04388.1|3338021_3338498_+|Lrp/AsnC-family-transcriptional-regulator
MPQFDEFEIRMLDILQRDGRKPVSELAQEIGLSTTPCARRFEALQETGIIKGFAAVLSRRAVGLTVEVFIQVRLVSHSDGSPESFIAAVQRMDEVSSCWTMTGDHDFLLHVMVPSVDDLNAFVMHRLMRLPGVRDVHTQLVLQNIKGPGHVPLSHLRK
>CP034445.1|AZO04389.1|3338609_3340160_+|magnesium-protoporphyrin-IX-monomethyl-ester-anaerobic-oxidative-cyclase
MNIVLINPPHTAIGSRVPDDHLPPLGLLAIGGPLIDSGHQVRLVDAEFGPMSLAVLVDDALCGDPDLILIGHSGSTSAHPTALKIAEMIKARAPGVIVIYGGVFPTYHWRDILTATDVFDFIVRGEGEATATALVEAIEMRQPVGSVAGIAYRDDLGRPVATQAAMTIADLDAWRVGWELIDHRRYSYWGGKRAVVMQFSRGCPHLCNYCGQRGFWTRWRHRDPVKFAREIAWLHREHGVELVNLADENPTSSKKAWRAFLHAMIAENVPVLIVGSTRADDIVRDADILHLYRKAGVIRWLLGMENTDEATLSLIRKGGSTKSDREAIRLLRRHGILSMATWVAGFEDETLSDLWRGFRQLIAYDPDQIQALYVTPHRWTPFFRVAADRKVIQKDVRLWDYKHQVLAMTRLKPWMLFFAVKLIEVAVQSRPKALARILFHPDPEQRHSMRWYTKMGRRVWFREVWGFLARDRRVTDGPTLAEFWGAPQDAEEESMIVRRPVRKPAAIIEDQRRLAG
>CP034445.1|AZO04390.1|3340203_3341097_-|acetylglutamate-kinase
MTDVAANAEMQAALLSRALPYMQRYENKTVVVKYGGHAMGDHELGKAFARDIALLKQSGVNPIVVHGGGPQIGAMLTKMGIESKFEGGLRVTDQKTVEIVEMVLAGSINKEIVALINAEGEWAIGLCGKDGNMVFAEKARKTMIDPDSNIERVLDLGFVGEPVEVDRTLLDLLARSEMIPVLAPVAPGRDGHTYNINADTFAGAIAGACRASRLLFLTDVPGVLDKNKKLIDELTVAEAKALIKDGTVSGGMIPKVETCIEAIERGVEGVVILNGKTPHSVLLELFTEHGAGTLIVP
>CP034445.1|AZO04391.1|3341652_3342192_+|sigma-70-family-RNA-polymerase-sigma-factor
MAPQDISKLIVRTSMKDRAAFDLLYKQTSAKLFGVCLRILRDRGEAEEALQEVFVKIWTKADRFAVSDLSPISWLVAIARNHAIDRIRARRSPSANIDAALDVADPTPGPEAMAVAGGEAERIHHCLDELEQDRAAAVRGAYLSGESYAELAERFKVPLNTMRTWLRRSLLRLRECLER

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Crispr_ID: CP034445_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034445_5

5336462-5336556

Orphan

Consensus_repeat	Method
TGGGACAACGACATGCATCAAGAAAGTTTTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034445_5

>merge|CP034445|5|5336462-5336556|CRISPRCasFinder
TGGGACAACGACATGCATCAAGAAAGTTTTTGAGCATTTCGCCCAAAAGTGCGCAGCGGTTCTGGGACAACGACATGCATCAAGAAAGTTTTTGA

>CP034445|5|4|5336462-5336556|CRISPRCasFinder
TGGGACAACGACATGCATCAAGAAAGTTTTTGA	GCATTTCGCCCAAAAGTGCGCAGCGGTTC
TGGGACAACGACATGCATCAAGAAAGTTTTTGA

Protein	Signature genes	Signature genes Name	Protein_function
CP034445.1\|AZO07583.1\|5338865_5339999_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
CP034445.1\|AZO06017.1\|5343959_5344655_+\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO06005.1\|5331818_5332208_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|225220
CP034445.1\|AZO06013.1\|5339995_5340904_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
CP034445.1\|AZO06007.1\|5332959_5334588_+\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235673
CP034445.1\|AZO06016.1\|5342420_5343899_+\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO06014.1\|5340908_5341667_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224596
CP034445.1\|AZO06010.1\|5336603_5337194_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
CP034445.1\|AZO06015.1\|5341695_5342421_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
CP034445.1\|AZO06002.1\|5325546_5328231_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
CP034445.1\|AZO06003.1\|5328372_5329476_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
CP034445.1\|AZO06012.1\|5338296_5338851_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
CP034445.1\|AZO06011.1\|5337413_5338304_+\|glucose-1-phosphate-thymidylyltransferase	unknown	unknown	gnl\|CDD\|130274
CP034445.1\|AZO06018.1\|5344676_5345441_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|366246
CP034445.1\|AZO06009.1\|5335455_5336364_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
CP034445.1\|AZO06004.1\|5329687_5330791_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
CP034445.1\|AZO06006.1\|5332411_5332768_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO06008.1\|5334669_5335455_+\|DUF1499-domain-containing-protein	unknown	unknown	gnl\|CDD\|377828
CP034445.1\|AZO06001.1\|5324987_5325332_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225861
CP034445.1\|AZO07582.1\|5330936_5331680_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200579

Protein	Function_ID	Function_description	E-value
CP034445.1\|AZO07583.1\|5338865_5339999_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
CP034445.1\|AZO06005.1\|5331818_5332208_-\|DUF427-domain-containing-protein	gnl\|CDD\|225220	COG2343, COG2343, Uncharacterized protein conserved in bacteria [Function unknown].	1.03479e-52
CP034445.1\|AZO06013.1\|5339995_5340904_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.44112e-125
CP034445.1\|AZO06007.1\|5332959_5334588_+\|fatty-acid--CoA-ligase	gnl\|CDD\|235673	PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.	0
CP034445.1\|AZO06018.1\|5344676_5345441_+\|sulfotransferase	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	3.09915e-12
CP034445.1\|AZO06014.1\|5340908_5341667_+\|hypothetical-protein	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.23085e-39
CP034445.1\|AZO06010.1\|5336603_5337194_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	7.00932e-38
CP034445.1\|AZO06015.1\|5341695_5342421_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	8.60026e-88
CP034445.1\|AZO06002.1\|5325546_5328231_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
CP034445.1\|AZO06003.1\|5328372_5329476_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.63963e-55
CP034445.1\|AZO06012.1\|5338296_5338851_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.31703e-102
CP034445.1\|AZO06009.1\|5335455_5336364_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.05119e-88
CP034445.1\|AZO06011.1\|5337413_5338304_+\|glucose-1-phosphate-thymidylyltransferase	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	7.89764e-178
CP034445.1\|AZO06004.1\|5329687_5330791_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.56714e-52
CP034445.1\|AZO06008.1\|5334669_5335455_+\|DUF1499-domain-containing-protein	gnl\|CDD\|377828	pfam07386, DUF1499, Protein of unknown function (DUF1499). This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.	3.04584e-18
CP034445.1\|AZO06001.1\|5324987_5325332_-\|VOC-family-protein	gnl\|CDD\|225861	COG3324, COG3324, Predicted enzyme related to lactoylglutathione lyase [General function prediction only].	1.3496e-27
CP034445.1\|AZO07582.1\|5330936_5331680_+\|polysaccharide-deacetylase	gnl\|CDD\|200579	cd10955, CE4_BH0857_like, Putative catalytic NodB homology domain of uncharacterized BH0857 protein from Bacillus halodurans and its bacterial homologs. This family is represented by a putative polysaccharide deacetylase BH0857 from Bacillus halodurans. Although its biological function still remains unknown, BH0857 shows high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Both BH0857 and SpPgdA belong to the carbohydrate esterase 4 (CE4) superfamily. This family also includes many uncharacterized bacterial polysaccharide deacetylases.	8.05943e-79

>CP034445.1|AZO06009.1|5335455_5336364_-|MBL-fold-metallo-hydrolase
MALEFDTSFDPAYGRAVTVAPDVLRITAGNPSPFTFHGTNSYLVGRDTLAVIDPGPEDDAHLETLLTAIAGRPVSHIFVSHTHRDHSPLAARLKERTGAPTLAEGPHRPARPLRIGEVNPLDASADLAFVPDIALANNALTEGDGWAIRTMLTPGHTANHAVFALEGTGILFSADHVMAWSTSIVAPPDGAMADYMSSLDRLLAREDRLLLPGHGGPVTAPQRFMRGLKTHRKMRERAILERIRAGDRTIREMVAAIYRDTDPRLHGAAGLSVLAHLEDLAARGLIATEGDPAIDGIFSPAG
>CP034445.1|AZO06008.1|5334669_5335455_+|DUF1499-domain-containing-protein
MASIPERQTSRAAGWSRRIGAFSLVLLLTAVAGYRLGFVETPPFLWVLAVVALLAALALLLAGLGLSRVWSFGDRGGRDLSVGALLALLVLAPYGVAVYWATIYPPLRDISTDLDDPPVLDTSDRTSDMNELSPPTPGEQSLQADTYPLVSGHSYNLPFETVVDAVETVLDRRDWQLTAPYPDINGQSEATINALAKGFVLGLPADVAIRVTDDGEQVIVDMRSASRYGRYDLGDNAARITDFLGELDQEVAGQVGAAPAE
>CP034445.1|AZO06007.1|5332959_5334588_+|fatty-acid--CoA-ligase
MLGLMQEWPLLCHKLIDHAERQHGSREVVSRSIEGPIVRTTFAEIHRRSLKAAQRLERDGFVLGDRIATLAWNTTRHIEAWYGIMGIGAIYHTLNPRLFPEQIAWIMNNAEDKAIFVDLTFVPLLEKIAGAVKSLRRVIVLTDQAHMPQTSLANAVAYEEWLAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHAMIAAMPDAMGLSTRDVVLPVVPMFHANAWGLGQSGPMIGTKLVMPGCKMDGASIYELLDTEKVTFSAAVPTVWMMLLQYLEETGKKLPYLNKVVIGGASCPRAITAKFQDDYDVQVVHAWGMTEMSPLGTLCTLKPQYQTLTGEARLDVQGKQGFPPFGVEMKVTDDDNNALPWDGKTFGHLKVRGPAVARAYYGGAGAEQFDADGWFDTGDVAHIDASGYMQITDRAKDVIKSGGEWISTIDLENLAVGHPDVAEAAAIGIPHSKWGERPLLVVVRKPGREPSKGDILTFMSGKVAKWWMPDDVAFVGEIPHTATGKIQKTSLRAQFKDYRLPTD
>CP034445.1|AZO06006.1|5332411_5332768_-|hypothetical-protein
MDAQLDEKALESTLAESLDDLAPDIKTVSEDEFAEVVGGALEAVGGTLLFKMRVENGENGEHVAAACIGDAGNRQFLLLTLPTSGGALKVETAARSTNPVAGIAAAYAGLMDAFKTAA
>CP034445.1|AZO06005.1|5331818_5332208_-|DUF427-domain-containing-protein
MDKPANPAPGFQRNPDKVITVEPYRGSVTVRAGDTVIARSTRAKVLSEPPYPAAFYIPFDDIDFSKLAGTEHSTHCPYKGDASYWSVQAAGEAGTNAMWAYEHPIDEMTEIRNHGAFYTSKVTVEAEPG
>CP034445.1|AZO07582.1|5330936_5331680_+|polysaccharide-deacetylase
MGLLRNSLCVLALSLLAASAGNAATLLEPTLHLKTQAPEGRGRVALTLDACGGKTDTRILSALVDNRIPATIFVTGIWLKRNAAAAEIMRAHPDLFELENHGGRHIPAVDTPRKIYGISSAGSPDAVQAEVESGAAALASAGGPAPKWFRGATAEYSPSAIAMIRKLGFKIAGFSVNGDGGSLLGAKETARRIGAAKDGDVIIAHINQPTHAAGEGVVQGLLALKQKGMTFVRLDDADGIGNDGTTD
>CP034445.1|AZO06004.1|5329687_5330791_+|glycosyltransferase-family-9-protein
MLQGPFAGVRSILILQTKYIGDLVLASTLAKNLRIAYPEARIVFLCEARFAGFLTAHGIADETVAFKRSSARGTVMQRGLELYHVLRKLRRLACDMTIDLTDSKTTHFVAMALNARIRVGYFPTERRLGRFERQSANVRAKPFGYGERHFLYRYLSPLEALGEDLRVRVPSIEPLPSETARVLTLLDSCGLRRKAFLVVHAGASFPGRRWQPERFAAAVDTISSETGLSVVLVGGPDEAQANDHIVAAVKAPVVNLVGKLSLETLMALLKEARLFLGNESGPMHMAAAAGTPVVGLYGLTNPVAWGPVGAPSISLRPPMPCECVAADMCHRTNPAKAFCVWRLEVDTVAEAVRELLARTDRPIKTAV
>CP034445.1|AZO06003.1|5328372_5329476_+|glycosyltransferase-family-9-protein
MLQIAPTPFRSILVLQTKFIGDIVLASALANNLQLAYPGVRIVFLCETHLAGFLTAHGIAAEAIPLSRARMRGMPFERGRELFRVVRELRRRRFDMTIDITDSKTSRLISGLVNAPVRVGYSPTERPLRWHERQPANVRMKPFGFGKKHFLYRYLSPLEALGVDLRVKAPAIRPLPFETTRVLALLARHHILPNAFVAVHAGASFAGRRWQPERFAEAIDRIAGETGLRVVLVGGPDENEATDRIVAAAKTPVVNLAGALRLETLLALLRQARLFLGNESGPMHMAAAAGTPVVGLFGLTNPVRWAPVGVPSISLRPSVPCDCVGGDLCRRTDPSKACCVWRLEVDPVVEAVLELLARTEAVLEAAV
>CP034445.1|AZO06002.1|5325546_5328231_+|pyruvate,-phosphate-dikinase
MTKWVYTFGDGAAEGRAGDRNLLGGKGANLAEMCSLGLPVPPGFTITTEVCNAYYANGRAYPDGLEADVVAALDHIGRITGRRFGDPSKLLLVSVRSGARASMPGMMDTVLNLGLNDETVEALAADSGDARFAYDSYRRFIQMYSDVVMGLDHEVFEEILEDQKASLGHELDTELTAAEWQGVISLYKAKVEEELGKPFPQDPHEQLWGAIGAVFSSWMNSRAITYRRLHDIPESWGTAVNVQAMVFGNMGDTSATGVAFTRNPSTGDRQLYGEFLVNAQGEDVVAGIRTPQNITEAARIAAGSDKPSLQKLMPDAFQAFVDISDRLEKHYRDMQDLEFTIERGKLWMLQTRSGKRTAKAALKIAVEMARDGLITKEEAVARIDPASLDQLLHPTIDPKAARDVIGMGLPASPGAATGEIVFSSADAEDARAQGRKAILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGKPCVSGAGSLRVDYKAGTLVSMGQTFRKGDVITIDGGNGQVLKGAVAMLQPELSGDFAAIMEWADAARRMKVRTNAETPLDARMARSFGAEGIGLCRTEHMFFDGDRIVAMREMILADTEKDRRSALDKLLPMQRSDFLELFEIMAGLPVTIRLLDPPLHEFLPKTEAELAEVASAMNVSADKLRQRTEALHEFNPMLGHRGCRLAVSYPEIAEMQARAIFEAAVEAGRKAGALVVPEIMVPLVGLVKELEYVKARIDAVAQSVMQETGTKIDYLTGTMIELPRAAIRAHVIAEAAEFFSFGTNDLTQTTFGISRDDAASFLETYRQKGIIEQDPFVSLDVDGVGELVRIAAEKGKATRPGIKLGICGEHGGDPASIRFCEEVGLDYVSCSPYRVPIARLAAAQAAVAAAKGAAKRA
>CP034445.1|AZO06001.1|5324987_5325332_-|VOC-family-protein
MKLNGKLDYLELPATGGTLDSVKSFYSAAFSWSFTDYGPTYSAFAEGLDGGFQADAGEAPAKPLPVLYSENLEETLDAVESAGGTIVKPIFSFPGGRRFHFTDPAGNELAVWGH
>CP034445.1|AZO06010.1|5336603_5337194_+|biotin-transporter-BioY
MAIATTMRPLVSLTLPERGAARLATQLFLALAGTLLLTLSAKTKVVLGPVDISLQTLAVLLIASAFGLRLAVATLLLYLAEGAFGLPVFQGTPEKGIGIAYMLGATGGYLAGFVVMAAIAGWAADRGWDRSPFKLFGAMLTAEVVMMAMGFAWLAMLIGPEKSWQFGVLPFIAGDLIKVALAASLVPAVWALLKRG
>CP034445.1|AZO06011.1|5337413_5338304_+|glucose-1-phosphate-thymidylyltransferase
MKGIILAGGSGTRLYPLTLAVSKQILPIYDKPMIYYPLSVLMLAGIRQILVISTPRDLPVFQALLGDGSEFGLELCYAEQAEPNGLAEAFIIGRDFIGKDSVSMILGDNIYFGGGLSQLCGEAAARDGGASVFAYYVDDPERYGVVSFDKVTGRALTIEEKPQKPKSNWAVTGLYFYDNNVVDIASTIRPSARGELEITAVNNVYLERGELHVHRLGRGYAWLDTGTHDSLLEASSFVRTIEHRQGIKIACPEEIALEQRWISADEVLDRAARLGKNEYAAYLRRRVADLMEDQGA
>CP034445.1|AZO06012.1|5338296_5338851_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MLEVRTLGLEDVLEIVPKRHGDARGYFCETWNAERFAQAGIDLTFVQDNHSYSAAAGVLRGLHYQLPPRAQDKLLRVVRGSVFDVVVDIRRSSPTFGKWSALEVSAEKGNQILVPKGYAHGFVTLVPDTEILYKVTDTYSPEHDRSIRFDDPAIGIAWPSLAGDFQLSDKDRKAPPLSEAEVFA
>CP034445.1|AZO07583.1|5338865_5339999_+|dTDP-glucose-4,6-dehydratase
MNFLVTGGAGFIGSAVCRHLCANPAYRVTNLDKLTYAGNLASLRTIENAHNYRFEQGDICDERAVLEILRRDDIDIVMNLAAESHVDRSIDGPGAFIETNIVGTYRILNAALEYWRGLSEERKAGFRFHHVSTDEVFGDLPFDGGMFVEETPYAPSSPYSASKAASDHLVRAWHETYGLPVVLSNCSNNYGPYHFPEKLIPLVILNALDEKPLPVYGAGANVRDWLFVEDHARALELVATKGRPGESYNVGGNSERTNLGVVEAICDLLDVRRPRAAGKRYRDLITFVTDRPGHDRRYAIDASKIARDLGWAPRENFDSGLARTVDWYLDNKWWWGPIREQRYAGERLGHAAAANSQSGPVAGNPARTAAESRKVTT
>CP034445.1|AZO06013.1|5339995_5340904_+|dTDP-4-dehydrorhamnose-reductase
MRLAVTGREGQVAASLVEAARGRDGVEVVAVGRPGLDLAQPDTVLAALEAARPDIVVSAAAYTAVDQAEDDKDLAFVVNATGAGKVAEAAARLGVPVIHLSTDYVFDGAKDGAYVETDATAPLGVYGASKLVGEEAVAAANPRHIILRTAWVYSPFGRNFVKTMLRLAADRDEIAVVADQWGNPTSALDIADAILHAAARLRDDRNFAAFGVYHLAGEGDTNWSSFARHILDTSRALGGPYAKVRDIATADYPTRARRPQNSRLSSAKFEGVFGWRARQWREATGTVVSRLQSGATEATAAL
>CP034445.1|AZO06014.1|5340908_5341667_+|hypothetical-protein
MNMISNTSTLWFRLAQFDIKLRYRNSTFGPLWITLNTAIFAASVGFLYAVLLNQPIREYLHHLATSIVLWQFLSATVVEGAESVINAHDLILNTKMSPASCIFRCVTKNFMILLHNLIVVLFTMLIAYPNVGLNIPMFVIGVVLLIAHATWISSIVSVISVRFRDVPLITASAMQLLFILSPILWTAKVLPSESLFLVLNPITYMIDAARTPILNGGTDYTSVLVSAAIALLGSLAAYALYRRTQHRIPYWL
>CP034445.1|AZO06015.1|5341695_5342421_+|ABC-transporter-ATP-binding-protein
MSQPSIQLTDVSVRIPIWSAPANRSLKQAALRFTTGGRLLAGDSGRFEVAALDGVSLDLQPGTRLGLCGHNGAGKTTLLRVLAGILKPTSGTAAITGDTAVLIKPSMGLSPELTGREFIRLQSLMAGISPREVEQQIDSIIDFSELGDFIDLPVRTYSAGMQTRLSFSAVTAYPTDIVLLDEGLGTGDESFQKKARERMDHWLNNAAIIVLASHSDALIRSMCHSAVYLEKGRIMREEIFS
>CP034445.1|AZO06016.1|5342420_5343899_+|hypothetical-protein
MRRQVIAALAGAGSMLFGHQELKQSYHKVFDPNIKLQSYKSRLAYLCLFAAHRLGLLADLQSSYLAGLPLIPAIAPPNHVYDRDFLNLRLNRVYDLPDVEIDKRRPQTINVLVPAFDFKSISAGFFGVFQMALFLRKTGVNVRLVLFDNFYFNLPEFKEKVLKYPGMERIFDELEVEYIGERREPLRVSEYDSAVATVWYSAYFAQKINLAIGKDKFIYLIQDYEALFYPANSLHAIADRTYEMNYHAIFSSESLMRFFVENDVGGIKSRNMSYTFFNNACSANLLPKEIFIHRNRSKEKKKIVFYSRPVVDRNMFELTALALSTAFRSGIFDPDEWDCVGMGLGEGVVELLPGVRSVSLPRMDLTTYIEEVASFDICLTLMASPHPSMIPMDLAASGCVVVTNTFKTKTESYLQSLSGNIIPAAPGLGEIVAALELAKFKSLDLEERYRLAKTMRYPRNWDQSLTSRHLNFLKRHVRAMASEKLAGERKTA
>CP034445.1|AZO06017.1|5343959_5344655_+|hypothetical-protein
MVTSHRAISLEPPNAERTLIVVGCGRGGTSLVAGAAIILGVPMGADSDSVNHEDVELVNAAQGRDVHGRPTSPVADSVTENLRRLIQERNDSNSLWGWKDPSADLYLEKVSTEVRNPLVVFVNRDMAAIAQSEFNKMQYSIEQAYEQALHRFSRYWSLLQKLQWPTLLVSYERAALDPEALLCEMADFIGLDQPTKQQREAVKRFAATRDYQAIPQSSTILEAPIIRSETA
>CP034445.1|AZO06018.1|5344676_5345441_+|sulfotransferase
MRNGRLGFVVAGVQKAGTSALFTYLTRHPSLLPPRRKEIHFFDDETGVDWISPDYERLHSFFPSDDSERIAFEATPISIFWPNALERIAEYNPEIQIILIFRDPIERAWSHWRMEMSRGADNVPFSYAIRNGRARLNGFARNHPAWRTYSYVERGLYGAQISNLLRLFHPSKVLLLRSNDLKRDPAGVLALIARFLQISPFPIKEEIAEHVGGGAYVPPSKEDIAYLRDFYQNDMELFVDTACVNVADWPTYWR

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Crispr_ID: CP034445_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034445_6

6124771-6124854

Orphan

Consensus_repeat	Method
CCAAAAGTGTGCGGCGGTTTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034445_6

>merge|CP034445|6|6124771-6124854|CRISPRCasFinder
CCAAAAGTGTGCGGCGGTTTTGGGCTAACGACATGCACTCTTCAAACAAGTGCATGTCGGCCAAAAGTGTGCAGCGGTTTTGGG

>CP034445|6|5|6124771-6124854|CRISPRCasFinder
CCAAAAGTGTGCGGCGGTTTTGGG	CTAACGACATGCACTCTTCAAACAAGTGCATGTCGG
CCAAAAGTGTGCAGCGGTTTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP034445.1\|AZO07655.1\|6133466_6134723_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
CP034445.1\|AZO06735.1\|6125807_6126269_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
CP034445.1\|AZO06736.1\|6126449_6128402_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
CP034445.1\|AZO06730.1\|6117202_6118261_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
CP034445.1\|AZO06725.1\|6110902_6112801_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
CP034445.1\|AZO06734.1\|6125066_6125741_+\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO06741.1\|6136303_6137509_+\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO06729.1\|6115752_6117189_-\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340838
CP034445.1\|AZO06740.1\|6135298_6136183_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|225973
CP034445.1\|AZO06727.1\|6113964_6114948_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
CP034445.1\|AZO06731.1\|6118250_6119183_-\|hypothetical-protein	unknown	unknown	unknown
CP034445.1\|AZO07653.1\|6121795_6124759_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
CP034445.1\|AZO06737.1\|6128382_6128937_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
CP034445.1\|AZO06732.1\|6119452_6120568_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
CP034445.1\|AZO06728.1\|6114959_6115514_-\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
CP034445.1\|AZO06726.1\|6113083_6113932_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
CP034445.1\|AZO06738.1\|6129031_6130393_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
CP034445.1\|AZO07654.1\|6130401_6131790_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
CP034445.1\|AZO06739.1\|6131786_6132644_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
CP034445.1\|AZO06733.1\|6120677_6121475_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236

Protein	Function_ID	Function_description	E-value
CP034445.1\|AZO07655.1\|6133466_6134723_-\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	5.37858e-13
CP034445.1\|AZO06735.1\|6125807_6126269_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	2.77193e-60
CP034445.1\|AZO06730.1\|6117202_6118261_-\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	5.18617e-41
CP034445.1\|AZO06725.1\|6110902_6112801_-\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	1.39541e-14
CP034445.1\|AZO06729.1\|6115752_6117189_-\|glycosyltransferase-family-1-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	2.74896e-54
CP034445.1\|AZO06740.1\|6135298_6136183_+\|restriction-endonuclease	gnl\|CDD\|225973	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms].	1.08876e-22
CP034445.1\|AZO06727.1\|6113964_6114948_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.40444e-146
CP034445.1\|AZO06736.1\|6126449_6128402_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.63458e-79
CP034445.1\|AZO07653.1\|6121795_6124759_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
CP034445.1\|AZO06737.1\|6128382_6128937_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	2.04623e-76
CP034445.1\|AZO06732.1\|6119452_6120568_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.44458e-35
CP034445.1\|AZO06728.1\|6114959_6115514_-\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.32283e-32
CP034445.1\|AZO06726.1\|6113083_6113932_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.63658e-86
CP034445.1\|AZO06738.1\|6129031_6130393_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.92546e-114
CP034445.1\|AZO07654.1\|6130401_6131790_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.23827e-94
CP034445.1\|AZO06739.1\|6131786_6132644_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	1.43064e-63
CP034445.1\|AZO06733.1\|6120677_6121475_+\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	8.5794e-85

>CP034445.1|AZO07653.1|6121795_6124759_+|isoleucine--tRNA-ligase
MTDTAETIDYSKTLYLPQTDFPMRAGLPEKEPGMVKRWQDMDLYRKLREEAAGREKFVLHDGPPYANGNIHIGHALNKILKDVINRSFQMRGYDANYVPGWDCHGLPIEWKIEEQYRAKGKNKDEVPVNEFRRECRDFAADWIKVQGSEFQRLGVIGDFDNPYTTMAYHAESRIAGELLKFAMSGQLYRGSKPVMWSVVERTALAEAEVEYQDYESDTIWVKFPVASLAQPVAGAAPALDGAALDLVEAHVVIWTTTPWTIPGNRAVSYSPRIAYGLYEVTAAENAFGPQPGEKLIFADALAEECAAKAKVTLNRLHSVSAEQLGKITLSHPFKGLGGGYEFPVPMVAGEHVTDDAGTGFVHTAPGHGREDFDAWTEAAADLRARGVDTTIPFTVDDAGFFTKDAPGFGPGREGGAARVIDDNGKKGNANQAVIDELIKRNALFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKDLGDGTTLRSRALKAIDDTRFVPAAGQNRIRAMIEERPDWVLSRQRAWGVPIAVFADEDGNVLKDEAVNQRIMEAFEKEGADAWFADGAKERFLGNHDASKWHQVMDILDVWFDSGSTHVFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYEAVITHGFTMDEEGRKMSKSLGNTVVPQDVIKQSGADILRLWVVTTDYWEDQRLGKNVLQTNIDAYRKLRNTIRWMLGTLAHDDGKDVPVEAMPELERLMLHRLSELDEVVRQGYDAFEFKRITRALLDFMVVELSAFYFDIRKDALYCDGPSSLRRRAAVQVVRHLFECLVKWLAPMLPFTTEEAWLDRHREAVSVHLDQFPEIPQNWRNEALAEKWRKVRQVRRVVTGALEIARAEKLIGSSLEAVPVVTLDDAALEAAIADVDMAEMAITSDLVIKHGKPPEGAFTLDDVKGVAVVVEKAEDRGLTKCARSWRYTADVGQDPEFPDVSARDAAVLHELKALGRL
>CP034445.1|AZO06733.1|6120677_6121475_+|MipA/OmpV-family-protein
MRIVGTIPLAVAMGLFAASIAQAGEGSWISGDWYLTLGATGLVAPNFEGGKKYMFSAQPIISLGKVGPEARFTSRNDNISLALVDDGSVRAGLTGKFLFHRTSKDELQGLDPVRFGGEVGGFFEFYPLDWLRARAELRHGVRSHNGFVADIAADAFYDITPSVRISGGPRVTFATANYFDAYYGVNATEAAASGLSEYHPGGGVKSTGLGGAITWKVTEPMTASVFTEYSRLMGPAADSSLVKERGDRNQWTFGVSTTYRFNFTM
>CP034445.1|AZO06732.1|6119452_6120568_+|glycosyltransferase
MRICCAISALFMNGGLQRDCLNISDRLVARGHSVTILTTRQVGHVESSATIKVHPARVLSNPGTEFALGKTLLSARRDFDCVVGFNKMAGLDIYYAGDPPYFASKLGWWRPFSPRFIRQQKLESMIFAPSSAVQIIALSEHQAALYRDFWRTEESRIHVVGPTLDPKRRRPELLAGERNEIRDRFGLPRQAVIALSIANRMKVKGLDRAVKALQPFPDIHWLVAGLRKDSEEEIRLRSLIAKCGMSNRVILLGIQEDIPAVVVASDFMLHPARLENTGTVILEALANGLPVIASAACGYAKYVEASGAGLVVANHDDPEIWRQAVRKAGDTAVRVQWHQAALAYGSSNPLTGGLEAACDLIESLRRNRHVG
>CP034445.1|AZO06731.1|6118250_6119183_-|hypothetical-protein
MPKALREYNWRQWLRLQPLTHAVKTARYRKIDRRFLSLPAKACDIQGTRDAARGRDVLLTIAFGNAQCLDLQVRLIRGLVRHDLHIVADNSVSEAAADENRQVCAAYGASYVRLPANPWTVKNPSRSHGAALNWMWHNILKPAAPAAFGFLDQDIFPTQPCDPFAPLQHVAFYGDLRRAGARWYLWAGYCFFRFDAVARKPLDFGLDWFAGLDTGGANWEVLYRDVDPNALPQRPITAFAALPGVELRQAYLRMAGNLAARSRPRRRSLVEGEKARGRFTLAGTHPSGPAQIGATMRLAVDTVIELCDGT
>CP034445.1|AZO06730.1|6117202_6118261_-|glycosyltransferase
MELESRPQAPRTQTGRFNGHSVTPDYRKDVLLPTVSVIIPVRDGAPYLGKALQSILDQDLADIEVIVVDDGSSDDSAAIATSLGEADGRVKVVANRGKGIVDALNMGIALARAPLVARMDGDDISLPDRLRLQVACFDADADLCLLGTAGLQIDRDGKPLRPIEVPIGNEPLRSALTGYNPMLHPTVMFRTEAVRRLGGYRRAFTYAEDYDLWLRLSEAGKLANMDARLVKLRSHPGQVSRVKEDQQKAAAALARQSALLRRSRAEPFDANGQPAEAIGTFLAWRAATGTGISSLERRDIELLLRTTGIPFATTCKLLLLAAVGAPSFRTLALGPRLAWRRMIARPAKMRPN
>CP034445.1|AZO06729.1|6115752_6117189_-|glycosyltransferase-family-1-protein
MRLVVDLTSMARWLGPPVGLVRVQRHYSAAAAAFTASDVAFTVFDPVDRVLRQVSPQLAAEIIAGDISCDMHFYPDPARVKVQFYDRWPNWARQALMAIIRPRRILITEIGAFTRHNPDSSLVPLLERIENWLMKPNERRLVARDDGSRVRIVPLRTVAGNEYEPAPGDHLLLMNNDWSHTDIGVISRACCSAGARLIVLLNDIIPIQFPDWYKRHDVKRFTDYVALAITLADRFILTSKRVTADMEEHAAGLGLHLPDLKLVPLGCDSARKSKAGGPLPDGLETGRYILFVSTIEPRKNHSLLMDVWRRLVQDGTVAHSGMKLVFVGRSGWMVDGVLERLHSHPDYGQSLIHLDNVDDGTLSLLYQDSAFCVYPSLYEGYGLPPVEALAYGKALIASTGGAIPEVVGPFGLCLDPLDVEGWEKAMREWITSPEVRTSYEAKAGEFTARSWEQAGRETLEATLAPFPDKVTPARERAP
>CP034445.1|AZO06728.1|6114959_6115514_-|HdeD-family-acid-resistance-protein
MTLPSDALRDAIGQTRDKWGWFVALGVLLLIFGGIAFGNLFIATVASVYVVGWLMLMAGIIEIIHAFGVKTWGRFFYWLLSGLLYAVAGFFAFDNPLLASAVLTLLLAIALIASGLLRSWVAFSHRPEQGWGWLLAAGIITILLGLMIAMGWPVNSLWVLGIFLAIDLVFQGWSFIAIGLALKR
>CP034445.1|AZO06727.1|6113964_6114948_+|bifunctional-riboflavin-kinase/FAD-synthetase
MTQAFKRLSTAAPLPAHLRGGVVAIGNFDGVHRGHQAVLERALAEAGRNGVPALVLTFEPHPRKVFRPQVPLFVLTPPPMKARLLAGLGFAALVEQPFTRDFASLSAEAFVTDVLEKNLGIHHAVTGFDFHFGKDRQGGPAFLMAAGERHGFGVTLVDAFRDEGAEVVSSSRIRGLLAEGKVEEAAGLLGYRFTVEAEVIGGQQLGRTLGFPTANMRLSSEAALREGIYAVRFRRADGTLHDGVASFGRRPTVDDNGAPLLETYVFDFSGDLYGETCEVSFFGFLRPELKFDGLDALVAQMKTDEAEARALLAGVRPLSQLDAEIAF
>CP034445.1|AZO06726.1|6113083_6113932_+|TIGR01459-family-HAD-type-hydrolase
MADSPDIIASLDDLAGRYAAILCDVWGVVHNGEWHFPAAAAALARARAANVPVVLITNSPRRSADVIAQMKVIGVPADACDRVVTSGDVTRDLIADGPRRIFHIGPERDFTLYDGLDIDLVEEFEASGVVCTGLYDDEVEKPADYAELLQRLRARNLQFICANPDILVERGERTIWCAGALARDYAQLGGRTLIAGKPFAPIYHVAMKEVAGLLGRAVERSEVLAIGDGMMTDVKGAADNGFDVLYVSGGIHAREHGDDPARLAAFLEKHGYRPVAVIPRLQ
>CP034445.1|AZO06725.1|6110902_6112801_-|hypothetical-protein
MIRDFFRDRRGNYALMTVITMIPLMGGVAIAVDYTELIRQKQETLNALDAAGIATAQQIVAGASDADAKSYAKTFFEANLRHVLPANTALTVTLPNNNAGGGTLVLEAALQYKPYFLPAAVALLGGTPGQTTVNFSARSEIRLKNTLEVSLVLDNSGSMSDISPTGGQQRIALLKTAATELVNMLAGQADLMRQIDRPVQFSLVPFSASVNVGPANKDKAWMDLDGISPIHHENFDWTKMSKTASGDPNKYIDKVGDAYWKRGSGWGAGQNTPMTRFKLYEEMTATTRTCTKKRSNGSCQTYSTPTTGQYEAWKGCVEARPYPYNVDDTTPTASKPASLFVPMFAPDEAGNLWTDSTRTSTNSWGYSNNWWIDSSDGLSVPQRQADMRKYFLTKPYDASTVSADDGPNAGCTTSPITPLQDVTTTAGKQTILGAIDAMTPTGNTNVPEGLAWGWRTLSSNEPFTEGRDNNERGNDKVVIVLTDGANTYSSVNDSSYANNRSTYAAYGYTGLAYLGSGSVTRLFMNTSSAVGKSTYTDANYTAALDEQMQTLCANAKANNIIVMTVSLDLSIQKTAEKKAISALTACASDSRFRRDPTDPSKPAKLFWNSTGATLSDDFKAIGSELSNLRIVS
>CP034445.1|AZO06734.1|6125066_6125741_+|hypothetical-protein
MTDRTFARAALVAPLVVSAIALSGCMSSPTYGTDKTAAAQLFDDVSGAASITPKRRTPIDYKPRPDLVKPAPGQKQNLPPPQESIETASTEWPESPEARRARIRADATAHQNDPNYQPEAVEDVQTDPASVKKAMADSASSHPPRWSPDDSSATRTAEIQRRLAEQKQGDPTTRKYLSEPPLAYRQPSDAAPQNELGEDEYKKERRLKAQAEGKKGGWFDWLGL
>CP034445.1|AZO06735.1|6125807_6126269_-|nucleoside-deaminase
MKRPDFMALALEEAEAAAGRGEVPVGAVVVSGNTVIAKAGNRTRELADPTAHAEMLAIREACRKLASERLTGHDLYVTLEPCAMCAGAISFARLRRLYFGAADEKGGAVVNGTRFFASPICHHAPDIYPGIGESEAALILKDFFRGKRNGGEW
>CP034445.1|AZO06736.1|6126449_6128402_+|pseudouridine-synthase
MDDDKKSPRGPRKGGSKPAGPRGGKPAHGAKKPFPKRERPIAAEGERNLKRYQPRETGPREAGAERGDRSFRKGPPRDGKPFEKREGRKPFAPRGDRPMAEGERPARDFKRGYKPREMGEGAERGDRPFRKGPPRDGKPFEKREGRKPFVPRGDRPVAAEGERGERRFDRPKRDFGDRPARDFADRPKRDFSDRPRGAGKPEGGFKPRPRPSEAAPEAGERIAKRLARAGIASRRDAEELIAAGRVKVNGKVLDSPAFNVSATDVIHLDGTEIPPIERTRLFLFHKPAGVVTTNRDPEGRKTVFDVLPSDLPRLMTIGRLDINTEGLLLLTNDGGLSRVLELPATGWLRRYRARVHGKVEESALAGLREGIAVDGVFYGSIEASLDREQGTNAWLTLGLREGKNREVKNILGALGLDVTRLIRISYGPFQLEDLPEGHVLEIKGRVLREQLGERLIEEAGANFDAEIQKPFSNKPVRGGGPRREEADRPKFTRDGDRRPIGEGGLIKARKRREDSRDEALSKLSTKPDRAFGERGAKSDRGGFGDKPRGGFGDKPRGKKSEREQRPIEPPGQRKANVWMAPGARPIGKGRAEADAARAAEAKARKAPFKPGGKGKPGAKPFGKPRGERPEGDGGNRPRGPKRGGDADRRR
>CP034445.1|AZO06737.1|6128382_6128937_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGEFRGRPLATPKSNAIRPTTDRTREAVFNVLAHRYADKLEGGRVLDLFAGTGALGLEALSRGASYCVFIEESTEGRGLIRENVEAYGLTGRTKIFRRDATHLGEAGTISPFGLIFADPPYGKGLGERALRSAKDGGWLLPGALCVVEEAASAAFDPGAGFSVMDERNYGETVIRFIEAG
>CP034445.1|AZO06738.1|6129031_6130393_+|insulinase-family-protein
MTPTRIALRTALLVGTLAIVASAPARAADDGDVKDFLLDNGMEVVVIPDHRAPIVTHMVWYKIGSADEPAGKSGIAHFFEHLMFKATTHHAAGEFDRAVSEIGGSNNAFTSYDYTAFHETVPPSALEQMMGFEADRMRNLILTDDVIKTERDVILEERRSRIDSNPQAVLDEEVDATLWQNQPYRIPVIGWMQEMEQLNRPDAKAFYDNYYRPNNAVLIVAGDVEPDAVKAMAERTYGKVARGPDLRPRIRPVEPEQNTRRTVTLTDARVSVPSFSTQWVVPSYHTAKPGEAEALDLLAEILGGGNRSRLYQELVVKQGIASDAAAYFQGTMLDDTNFTVYGAPRGDAKLADVEAAVDAEIARIVKDGVSDDELERAKTRYVRSMIFARDKQDDMANMYGSTLATGGNVKDVQEWPGRIRKVTADEVKAVAARYLVLEHSTTGYLLPQQQAGN
>CP034445.1|AZO07654.1|6130401_6131790_+|insulinase-family-protein
MAPSHTSTLPSPAREEGGHIYRVVATLCFALFFLLLPALAARAEMNIQEVKSKKGITAWLVEDHSIPLIAIRFVFDGGSAQDPAGKEGLVNLMTGLFDEGAGGLDSDAFQQKLDDAGAEMSFQAARDGTYGSMRMLSDQKDEAFGLLKLAVNSPRFDQAPIDRIRAQVLSGILANERDPNTVAQQRWLRAIYGEHPYSRSDQGTKGSLTSITADDIRAFHKANFARGGLHVAVVGDIDAATLGKKLDDVFGDLPERQTLAPVSDVTPKLGQQLAVNYDLPQTSLQLAWPGVKRSDPNFFATVLMNEILGGSTFTSRLFSEVREKRGLAYGVSSDLVDNEHSHALLVTTATRSDRAAETLSIVRQVVKDMAENGPTEEELAIKKYMIGAYAINNLDSSASIAATLVELQVDNLGIDYMKRRAALINAVTLAEVKAAAKKLLSADPAVMVIGPPLVQVAGGGKG
>CP034445.1|AZO06739.1|6131786_6132644_+|patatin-like-phospholipase-family-protein
MSPTFGVAFGGGGARGLAHIHIIEALDELGIKPVAIAGSSIGSIMGAGMASGMTGAEIHGYARSILGSRAEVAARMWRSRPGTIAEAMQGGIRVGQFNIERILKAFLPEPIPRTFDALKIPLKVTATDYFGHKLAVLAEGELHSALAASAAIPAVFRPVVRNGCLLIDGGIYNPVPFDLLEKDADIIIAIDVVGAPSDAERKHPTTVDLMYGASQLMMQSIIANKLQQSRPDILVRPKVSKYRVLDFLKIEALMAETAEIKDEVKRAVEKAVARHGGKRGKKKVV
>CP034445.1|AZO07655.1|6133466_6134723_-|porin-family-protein
MSAAHAADVVQEQAAPGFNWSGVYVGFGVGAGANVHKLSSDFLPGSSLNGIGGEGIYGQATVGYDYMVSQRFLLGGLIDAHVGTIKTSLDVGALGGLSADLKETYGFDVGVRAGYLLTPSTLGYVLGGYAWQKYKLDTNAGFGMDWDQGGYFVGAGVETAINSNWTLKGEYRYTRFGTKDNLLSQFGLPDGALNLDTSRHTFEVAASYRFNANDGGAASFETPSYNWTGFYVGGGLGAGAVVHQIEVPPADVKVNGLGGEGVFGEASLGYDQDMGSWVVGGLVDARLSGIKSKLELGGLLGGGVDSISLNTDYGFDVLGRIGMKVNEATLAYALAGYSWQHFKLDAPAPLDVDWGSSGFSVGAGLETAVSDKMTVGIEYRYSQFAKEDFSDEFPILSGLVTSTPSFHTVRIDAKYKFN
>CP034445.1|AZO06740.1|6135298_6136183_+|restriction-endonuclease
MAFGVFIHRTDSIYDDSPAEQYQFPRQYLRRVEACVGDWIIYYEPSKVTETRGYFAMAKVQQVIPDLSAPDMYLALIEPGTYLDFVNPVPFSGADGLVERGLLNNEGRISGRAQSAVRALSPADFNRIIDLAFDASEVVPRVEETGFQEEQAPFQFEQSRDRANYIGSRIVRDRIFRRIVLRAYDERCAITGLKLINGGGRAEVSAAHIRPVERNGPDVINNGIALSGTAHWMFDRGLISLSDDLEILISRQVNDVDSVQGFINKTRRALLPSRLSERPHPRFLQWHREHCFKQ
>CP034445.1|AZO06741.1|6136303_6137509_+|hypothetical-protein
MPIKSKDGGYPVRFSVPRQRWSKIFRTQDELRAFLTSEIKHWQEYNQPRDFPLPGGSQGLAFLDPLTTAIFNEAMSTGPHPEDALKILEDRGALLSEGLYGRFLSKLRAEKPKLYPGAVAAIAATLGPHNAWPDQSGRQPFPWAVWLSGLAAILELVPSSLIKPEADQLTAVVSDALAHRDETEEMKHAFETWSGKTQSDTQAEIDRFRQSAADAAKFTQAQLTQALADSSTRILELEDKVRKRLVLEAPTTYWSKKANGHVAIAFGFGALFLLGLGSGIYWLTHYGVDLVADAHQRIVGNVQDPGLLALVPLAFITLPTLAFAWLLRHVSRVIVQNLALGADARLRGTIATTYSALTVDQAATPAELAIVFNALFRPVDGSTHSEIAPPNLADLMELTKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	CP034445.1	100944-100972	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	CP034445.1	2937059-2937087	2	0.931

1. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to position: 100944-100972, mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccagaagtgcgcagcggttc	Protospacer
**** *******.****************

2. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to position: 2937059-2937087, mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccagaagtgcgcagcggttc	Protospacer
**** *******.****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034445_4	4.6\|3331589\|24\|CP034445\|CRT	3331589-3331612	24	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	979180-979203	2	0.917
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	77392-77420	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	345032-345060	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	499073-499101	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1204633-1204661	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	47807-47835	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	494097-494125	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	345032-345060	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	63204-63232	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	237277-237305	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	805730-805758	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	761927-761955	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	747195-747223	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	639956-639984	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	997609-997637	2	0.931
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	359057-359085	2	0.931
CP034445_4	4.1\|3331310\|24\|CP034445\|CRT	3331310-3331333	24	NZ_CP013436	Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence	44120-44143	3	0.875
CP034445_4	4.1\|3331310\|24\|CP034445\|CRT	3331310-3331333	24	NZ_CP013436	Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence	4346-4369	3	0.875
CP034445_4	4.1\|3331310\|24\|CP034445\|CRT	3331310-3331333	24	NZ_CP006373	Aureimonas sp. AU20 plasmid pAU20f, complete sequence	12631-12654	3	0.875
CP034445_4	4.1\|3331310\|24\|CP034445\|CRT	3331310-3331333	24	MH539650	Siphoviridae sp. isolate ctcf5, complete genome	38977-39000	3	0.875
CP034445_4	4.6\|3331589\|24\|CP034445\|CRT	3331589-3331612	24	MH697579	Mycobacterium phage Cane17, complete genome	60679-60702	3	0.875
CP034445_4	4.6\|3331589\|24\|CP034445\|CRT	3331589-3331612	24	MK359359	Mycobacterium phage Colt, complete genome	61275-61298	3	0.875
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	237158-237186	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	27785-27813	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	174995-175023	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	243467-243495	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1231300-1231328	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1528410-1528438	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	287467-287495	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	4947-4975	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	27343-27371	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	233828-233856	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	404201-404229	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	27780-27808	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013634	Rhizobium sp. N324 plasmid pRspN324d, complete sequence	349340-349368	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	399791-399819	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	606865-606893	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	742711-742739	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1924354-1924382	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	2176432-2176460	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	348752-348780	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	586807-586835	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	41460-41488	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	277940-277968	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1146179-1146207	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	109175-109203	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	271254-271282	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	680338-680366	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1698070-1698098	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2199411-2199439	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1553123-1553151	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1642415-1642443	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1742963-1742991	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	272085-272113	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	233800-233828	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	355860-355888	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	102067-102095	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	30321-30349	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	179903-179931	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1334310-1334338	3	0.897
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	2094555-2094583	4	0.862
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1718305-1718333	4	0.862
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	333399-333427	4	0.862
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	430939-430967	4	0.862
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1258985-1259013	5	0.828
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	273279-273307	5	0.828
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2127702-2127730	7	0.759
CP034445_5	5.1\|5336495\|29\|CP034445\|CRISPRCasFinder	5336495-5336523	29	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	288654-288682	7	0.759

1. spacer 4.6|3331589|24|CP034445|CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 2, identity: 0.917

ggcaactggggcgccggcaacggc	CRISPR spacer
ggcaaatggagcgccggcaacggc	Protospacer
***** ***.**************

2. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

3. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

4. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

5. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

6. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

7. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

8. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

9. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatatcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

10. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

11. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

12. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

13. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

14. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

15. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

16. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 2, identity: 0.931

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgcgcagcggttt	Protospacer
**** ***********************.

17. spacer 4.1|3331310|24|CP034445|CRT matches to NZ_CP013436 (Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence) position: , mismatch: 3, identity: 0.875

ggcaatggcaatgtcggcgtcggc	CRISPR spacer
tgcaacggcaatgtcggcggcggc	Protospacer
 ****.************* ****

18. spacer 4.1|3331310|24|CP034445|CRT matches to NZ_CP013436 (Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence) position: , mismatch: 3, identity: 0.875

ggcaatggcaatgtcggcgtcggc	CRISPR spacer
tgcaacggcaatgtcggcggcggc	Protospacer
 ****.************* ****

19. spacer 4.1|3331310|24|CP034445|CRT matches to NZ_CP006373 (Aureimonas sp. AU20 plasmid pAU20f, complete sequence) position: , mismatch: 3, identity: 0.875

ggcaatggcaatgtcggcgtcggc	CRISPR spacer
ggcaatggcaatggcggcatcgga	Protospacer
************* ****.****

20. spacer 4.1|3331310|24|CP034445|CRT matches to MH539650 (Siphoviridae sp. isolate ctcf5, complete genome) position: , mismatch: 3, identity: 0.875

ggcaatggcaatgtcggcgtcggc	CRISPR spacer
tgcaatggcaatgttggcgtccgc	Protospacer
 *************.****** **

21. spacer 4.6|3331589|24|CP034445|CRT matches to MH697579 (Mycobacterium phage Cane17, complete genome) position: , mismatch: 3, identity: 0.875

ggcaactggggcgccggcaacggc	CRISPR spacer
ggcaactggggcgccagcaacccc	Protospacer
***************.*****  *

22. spacer 4.6|3331589|24|CP034445|CRT matches to MK359359 (Mycobacterium phage Colt, complete genome) position: , mismatch: 3, identity: 0.875

ggcaactggggcgccggcaacggc	CRISPR spacer
ggcaactggggcgccagcaacccc	Protospacer
***************.*****  *

23. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

24. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

25. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

26. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

27. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

28. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
acatgtcgcccaaaagtgtgcagcggttc	Protospacer
.*** *************.**********

29. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

30. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

31. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

32. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

33. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

34. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

35. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013634 (Rhizobium sp. N324 plasmid pRspN324d, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

36. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgggcagcggttt	Protospacer
**** ************* *********.

37. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

38. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

39. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

40. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

41. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

42. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

43. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

44. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

45. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

46. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

47. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgggcagcggttt	Protospacer
**** ************* *********.

48. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

49. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

50. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

51. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

52. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

53. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

54. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

55. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

56. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

57. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggttt	Protospacer
**** **** ******************.

58. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

59. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

60. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 3, identity: 0.897

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcccaaaagtgtgcagcggttt	Protospacer
**** *************.*********.

61. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 4, identity: 0.862

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
ggatgtcgcccaaaagtgtgcagcggttt	Protospacer
* ** *************.*********.

62. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 4, identity: 0.862

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
ccatgtcgcgcaaaagtgcgcagcggttt	Protospacer
 *** **** ******************.

63. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 4, identity: 0.862

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagcggctt	Protospacer
**** **** ****************.*.

64. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 4, identity: 0.862

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gtatgtcgcccaaaagtgggcagcggttt	Protospacer
*.** ************* *********.

65. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 5, identity: 0.828

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
tcatgtcgcccaaaagtgtgcagcgggtt	Protospacer
 *** *************.******* *.

66. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 5, identity: 0.828

-gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
agca-gtcgcgcaaaagtgtgcagcggttt	Protospacer
 ***  **** ********.*********.

67. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.759

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
gcatgtcgcgcaaaagtgcgcagtgcgca	Protospacer
**** **** *************.*  .

68. spacer 5.1|5336495|29|CP034445|CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.759

gcatttcgcccaaaagtgcgcagcggttc	CRISPR spacer
ataagtcgcgcaaaagtgtgcagcggttt	Protospacer
..*  **** ********.*********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

431107 : 439481

uncultured_Mediterranean_phage(85.71%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO01988.1\|431107_432628_-	LysM peptidoglycan-binding domain-containing protein	S6B1Q4	Bacillus_phage	5.3e-11	37.5
AZO01989.1\|432888_433542_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.6e-17	39.1
AZO01990.1\|433572_434331_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
AZO01991.1\|434335_435640_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.8e-101	57.2
AZO01992.1\|435742_436609_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.9e-45	43.8
AZO01993.1\|436605_437331_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AZO01994.1\|437413_437632_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
AZO01995.1\|437928_438684_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-40	47.1
AZO07276.1\|438680_439481_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.4e-31	32.0

DBSCAN-SWA_2

3154863 : 3212569

Bacillus_virus(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO04215.1\|3154863_3156738_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
AZO04216.1\|3156905_3158213_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
AZO04217.1\|3158333_3160349_+	thioredoxin domain-containing protein	NA	NA	NA	NA
AZO04218.1\|3160517_3161129_+\|transposase	transposase	E5E3P6	Burkholderia_phage	7.8e-14	37.0
AZO04219.1\|3161080_3161524_+\|transposase	IS4/IS5 family transposase	NA	NA	NA	NA
AZO04220.1\|3161698_3162964_-	transcription termination factor Rho	NA	NA	NA	NA
AZO04221.1\|3163142_3163679_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
AZO04222.1\|3163675_3164704_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AZO04223.1\|3165199_3166021_+	kinase/pyrophosphorylase	NA	NA	NA	NA
AZO04224.1\|3166316_3166916_+	Maf-like protein	NA	NA	NA	NA
AZO04225.1\|3166908_3167736_+	shikimate dehydrogenase	NA	NA	NA	NA
AZO04226.1\|3167735_3168341_+	dephospho-CoA kinase	NA	NA	NA	NA
AZO04227.1\|3168415_3169120_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.6e-55	49.6
AZO04228.1\|3169404_3169905_-	protein-export chaperone SecB	NA	NA	NA	NA
AZO04229.1\|3170023_3170518_-	membrane protein FxsA	NA	NA	NA	NA
AZO04230.1\|3170722_3171430_+	calcium-binding protein	NA	NA	NA	NA
AZO04231.1\|3171452_3172556_+	transglycosylase	NA	NA	NA	NA
AZO04232.1\|3172552_3173077_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
AZO04233.1\|3173130_3173499_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZO04234.1\|3173791_3174040_-	hypothetical protein	NA	NA	NA	NA
AZO04235.1\|3174367_3175294_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AZO04236.1\|3175585_3176203_-	transglutaminase	NA	NA	NA	NA
AZO04237.1\|3176404_3177682_-	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA
AZO04238.1\|3177965_3178328_-	septal ring lytic transglycosylase RlpA family protein	S5MVR9	Sinorhizobium_phage	5.8e-25	61.3
AZO04239.1\|3178637_3178823_+	hypothetical protein	NA	NA	NA	NA
AZO04240.1\|3178869_3179673_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.1e-26	35.0
AZO04241.1\|3179680_3180460_-	ABC transporter permease subunit	NA	NA	NA	NA
AZO04242.1\|3180456_3181614_-	alkanesulfonate monooxygenase, FMNH(2)-dependent	NA	NA	NA	NA
AZO04243.1\|3181687_3182656_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AZO04244.1\|3183037_3184234_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AZO07436.1\|3184277_3184463_-	hypothetical protein	NA	NA	NA	NA
AZO04245.1\|3184485_3185346_-	ABC transporter permease subunit	NA	NA	NA	NA
AZO04246.1\|3185342_3186116_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.0e-31	38.0
AZO04247.1\|3186279_3187296_-	taurine ABC transporter substrate-binding protein	NA	NA	NA	NA
AZO04248.1\|3187751_3188678_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AZO04249.1\|3189176_3190517_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AZO07437.1\|3190518_3190749_+	hypothetical protein	NA	NA	NA	NA
AZO04250.1\|3190917_3192351_+	pyridoxal-phosphate dependent enzyme	A0A1W6JHY1	Lactococcus_phage	2.2e-46	37.9
AZO04251.1\|3192347_3193517_+	cystathionine gamma-synthase	NA	NA	NA	NA
AZO04252.1\|3193732_3194455_+	GntR family transcriptional regulator	NA	NA	NA	NA
AZO04253.1\|3194583_3195825_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AZO04254.1\|3195866_3196673_+	Asp/Glu racemase	NA	NA	NA	NA
AZO04255.1\|3197243_3197426_+	hypothetical protein	NA	NA	NA	NA
AZO04256.1\|3197449_3197755_-	hypothetical protein	NA	NA	NA	NA
AZO04257.1\|3197783_3199454_-	cyclic nucleotide-binding domain-containing protein	G3MA85	Bacillus_virus	3.1e-28	30.2
AZO04258.1\|3200167_3200788_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
AZO04259.1\|3200822_3201644_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
AZO04260.1\|3201640_3203512_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.7e-48	29.6
AZO04261.1\|3203642_3204662_-	glucokinase	NA	NA	NA	NA
AZO04262.1\|3204750_3205833_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AZO04263.1\|3205915_3206818_-	SDR family oxidoreductase	NA	NA	NA	NA
AZO04264.1\|3206814_3207966_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
AZO04265.1\|3207946_3208639_-	glutathione S-transferase family protein	NA	NA	NA	NA
AZO04266.1\|3208798_3209605_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
AZO04267.1\|3209788_3210229_-	YraN family protein	NA	NA	NA	NA
AZO04268.1\|3210225_3211146_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	7.6e-45	42.7
AZO04269.1\|3211272_3211461_+	hypothetical protein	NA	NA	NA	NA
AZO04270.1\|3211642_3212569_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

3532281 : 3544784

Sinorhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO04551.1\|3532281_3533550_-	hypothetical protein	A0A067XRF8	Caulobacter_phage	1.6e-21	29.1
AZO04552.1\|3533587_3533794_-	hypothetical protein	NA	NA	NA	NA
AZO07460.1\|3533790_3534207_-	hypothetical protein	A0A291AUQ6	Sinorhizobium_phage	2.2e-20	44.7
AZO04553.1\|3534257_3534629_-	DUF4031 domain-containing protein	R9TSA1	Rhizobium_phage	4.9e-19	62.8
AZO04554.1\|3534625_3535201_-	hypothetical protein	NA	NA	NA	NA
AZO04555.1\|3535184_3536216_-	phage Gp37/Gp68 family protein	G8DH75	Emiliania_huxleyi_virus	2.0e-94	52.5
AZO04556.1\|3536388_3536631_-	hypothetical protein	NA	NA	NA	NA
AZO04557.1\|3536636_3536870_-	hypothetical protein	NA	NA	NA	NA
AZO04558.1\|3536997_3537642_-	LexA family transcriptional regulator	NA	NA	NA	NA
AZO04559.1\|3537570_3537963_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZO04560.1\|3537959_3538397_+	hypothetical protein	NA	NA	NA	NA
AZO04561.1\|3538527_3539010_+	hypothetical protein	A0A291AUJ7	Sinorhizobium_phage	5.8e-20	38.8
AZO07461.1\|3539073_3539631_+	hypothetical protein	K4JN80	Caulobacter_virus	4.9e-07	37.8
AZO04562.1\|3539656_3540007_+	hypothetical protein	NA	NA	NA	NA
AZO04563.1\|3540052_3540985_+	DUF2303 family protein	A0A291AUR3	Sinorhizobium_phage	8.4e-68	45.1
AZO04564.1\|3540984_3542175_+	hypothetical protein	M4MB46	Vibrio_phage	2.3e-22	38.2
AZO04565.1\|3542171_3544784_+	DNA methylase N-4	J7I4L6	Pseudomonas_phage	7.9e-273	52.6

DBSCAN-SWA_4

3547902 : 3566414

Brucella_phage(30.77%)

protease,terminase,portal,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO04573.1\|3547902_3549027_+	helix-turn-helix domain-containing protein	A0A291AUK7	Sinorhizobium_phage	3.3e-34	33.4
AZO07462.1\|3549133_3549682_+	transcriptional antiterminator NusG	NA	NA	NA	NA
AZO07463.1\|3549828_3550176_+	HNH endonuclease	I3ULZ4	Rhodobacter_phage	3.5e-11	50.0
AZO04574.1\|3550243_3550828_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
AZO04575.1\|3550832_3552572_+\|terminase	terminase large subunit	Q6DMU3	Streptococcus_phage	1.6e-96	39.9
AZO04576.1\|3552568_3553795_+\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	2.3e-129	61.0
AZO04577.1\|3553791_3554457_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.8e-57	51.1
AZO07464.1\|3554508_3555909_+\|capsid	phage major capsid protein	A0A2H4JD98	uncultured_Caudovirales_phage	1.2e-131	61.3
AZO04578.1\|3555969_3556191_+	hypothetical protein	NA	NA	NA	NA
AZO04579.1\|3556250_3556613_+	hypothetical protein	NA	NA	NA	NA
AZO04580.1\|3556615_3557185_+	hypothetical protein	C7BGH1	Burkholderia_phage	1.1e-06	30.9
AZO04581.1\|3557218_3557629_+	hypothetical protein	B4UTP8	Rhizobium_phage	8.1e-31	57.9
AZO04582.1\|3557793_3558141_+\|head,tail	head-tail adaptor protein	A0A141GEW5	Brucella_phage	5.1e-18	44.6
AZO04583.1\|3558137_3558638_+	HK97 gp10 family phage protein	NA	NA	NA	NA
AZO04584.1\|3558634_3559039_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AZO04585.1\|3559122_3559563_+	hypothetical protein	NA	NA	NA	NA
AZO04586.1\|3559559_3560006_+	gene transfer agent family protein	NA	NA	NA	NA
AZO04587.1\|3560129_3562610_+	hypothetical protein	B4UTQ6	Rhizobium_phage	2.0e-68	31.0
AZO04588.1\|3562619_3563288_+	hypothetical protein	A0A141GEX3	Brucella_phage	9.7e-50	50.7
AZO04589.1\|3563287_3563884_+	hypothetical protein	A0A141GEX4	Brucella_phage	5.4e-60	56.2
AZO04590.1\|3563892_3564300_+	hypothetical protein	NA	NA	NA	NA
AZO07465.1\|3564359_3566414_+	fibronectin type III domain-containing protein	A0A141GEY5	Brucella_phage	5.8e-170	56.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034445

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection