CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034441	Staphylococcus aureus strain PMB 81-4 chromosome, complete genome	13 crisprs	NA	9	4	0	0

Cas Category Instructions

Results visualization

1. CP034441

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CRISPR-Cas detection and classification

Crispr_ID: CP034441_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_1

160761-160846

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_1

>merge|CP034441|1|160761-160846|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>CP034441|1|1|160761-160846|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: CP034441_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_2

171593-171685

Orphan

Consensus_repeat	Method
CTTATCAATTTATTGATTAGTGTTTCTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_2

>merge|CP034441|2|171593-171685|CRISPRCasFinder
CTTATCAATTTATTGATTAGTGTTTCTTATGCATGAGCTTTAGCTCAAGCGTTCCTCTAATCTTCTTATCAATTTATTGATTAGTGTTTCTTA

>CP034441|2|2|171593-171685|CRISPRCasFinder
CTTATCAATTTATTGATTAGTGTTTCTTA	TGCATGAGCTTTAGCTCAAGCGTTCCTCTAATCTT
CTTATCAATTTATTGATTAGTGTTTCTTA

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Crispr_ID: CP034441_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_3

248455-248698

Orphan

Consensus_repeat	Method
CCNCNCCAACTTGCATTGT	CRT

4 spacers

The CRISPR arrays of CP034441_3

>merge|CP034441|3|248455-248698|CRT
CTACCCCAACTTGCATTGTCTGTTGAAATTGGTGACCCAATTTCTCTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTTGGAATTGGTGATCCTATTTCTCTCTGTTGTAGCCCCGCCAACTTGCACATTTTTGTATGCTGACTTTTCGCCAGCTTCTGTGTTGGGCCCCACCCCAACTTGCATTGTCTGTTGAAATTGGTGATCCAATTTCTCTATGTTGGGGCCCCGCCAACTTGCATTGT

>CP034441|3|1|248455-248698|CRT
CTACCCCAACTTGCATTGT	CTGTTGAAATTGGTGACCCAATTTCTCTATGTTGGGG
CCCCGCCAACTTGCATTGT	TTGTTGGAATTGGTGATCCTATTTCTCTCTGTTGTAG
CCCCGCCAACTTGCACATT	TTTGTATGCTGACTTTTCGCCAGCTTCTGTGTTGGGCC
CCACCCCAACTTGCATTGT	CTGTTGAAATTGGTGATCCAATTTCTCTATGTTGGGG
CCCCGCCAACTTGCATTGT

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Crispr_ID: CP034441_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_4

372849-372941

Orphan

Consensus_repeat	Method
CCTTACAACTTTTAGTTGTTAGGGGATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_4

>merge|CP034441|4|372849-372941|CRISPRCasFinder
CCTTACAACTTTTAGTTGTTAGGGGATTTTATGCATGTGCTCGGCGCATGTGTCCCTCTTCTTCCTTACAACTTTTAGTTGTTAGGGGCTTTT

>CP034441|4|3|372849-372941|CRISPRCasFinder
CCTTACAACTTTTAGTTGTTAGGGGATTTT	ATGCATGTGCTCGGCGCATGTGTCCCTCTTCTT
CCTTACAACTTTTAGTTGTTAGGGGCTTTT

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Crispr_ID: CP034441_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_5

506422-506503

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_5

>merge|CP034441|5|506422-506503|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGCTCCCCAATTTCTCTGTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP034441|5|4|506422-506503|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGCTCCCCAATTTCTCTGTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: CP034441_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_6

555243-555324

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_6

>merge|CP034441|6|555243-555324|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>CP034441|6|5|555243-555324|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

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Crispr_ID: CP034441_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_7

1125761-1125951

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCAC	CRT

3 spacers

The CRISPR arrays of CP034441_7

>merge|CP034441|7|1125761-1125951|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCGCCAATATAACAC

>CP034441|7|2|1125761-1125951|CRT
TGTTGGGGCCCCGCCAACTTGCAC	ATTATTGTAAGCTGACTTTCCGCCAGCTTCTA
TGTTGGGGCCCCGCCAACTTGCAT	TGCCTGTAGAATTTCTTTTCGAAATTCTCTG
TGTTGGGGCCCCGCCAACTTGCAC	ATTATTGTATGCTGACTTTCCGCCAGCTTCTA
TGTTGGGGCCCGCCAATATAACAC

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Crispr_ID: CP034441_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_8

1457927-1458100

Orphan

Consensus_repeat	Method
TGCAAGTTGG---CGGGGCCCCAACATAGAAGCTGGCGGAAAG	PILER-CR
TTACAATAATGTGCAAGTTGGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP034441_8

>merge|CP034441|8|1457927-1458100|PILER-CR,CRISPRCasFinder
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGGTTACAATAATGTGCAAGTTGGGGT

>CP034441|8|1|1457927-1458071|PILER-CR
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCA	AGTTGGCGGGGCCCCAA
CAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCC	CAACATAGAAGCTGGC
GGAAAG

>CP034441|8|6|1458021-1458100|CRISPRCasFinder
TTACAATAATGTGCAAGTTGGCGG	GGCCCCAACATAGAAGCTGGCGGAAAGTCAGG
TTACAATAATGTGCAAGTTGGGGT

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Crispr_ID: CP034441_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_9

1590070-1590177

Orphan

Consensus_repeat	Method
CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_9

>merge|CP034441|9|1590070-1590177|CRISPRCasFinder
CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT

>CP034441|9|7|1590070-1590177|CRISPRCasFinder
CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT	TAGTGGCTCTTATGCAGTTGGAGCGAAGAT
CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT

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Crispr_ID: CP034441_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_10

1729540-1729618

Orphan

Consensus_repeat	Method
TTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_10

>merge|CP034441|10|1729540-1729618|CRISPRCasFinder
TTTCTACAGACAATGCAAGTTGGCGGAGTCCCAACTAAGAGAAATTGGATTCCCAATTTCTAGAGACAATGCAAGTTGG

>CP034441|10|8|1729540-1729618|CRISPRCasFinder
TTTCTACAGACAATGCAAGTTGG	CGGAGTCCCAACTAAGAGAAATTGGATTCCCAA
TTTCTAGAGACAATGCAAGTTGG

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Crispr_ID: CP034441_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_11

1896479-1896564

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_11

>merge|CP034441|11|1896479-1896564|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGGTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGG

>CP034441|11|9|1896479-1896564|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGGTGACGA
AAAGTCAGCTTACAATAATGTGCAAGTTGG

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Crispr_ID: CP034441_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_12

2007985-2008066

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034441_12

>merge|CP034441|12|2007985-2008066|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTG

>CP034441|12|10|2007985-2008066|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAGTAGGAGCGCCTGCGCTAAGCGCATGCA
TAAGAGCCCCTAACAACTAAAGTTG

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Crispr_ID: CP034441_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034441_13

2543345-2543497

Orphan

Consensus_repeat	Method
AAGTTGGGGACGGGGCCCCAACACAGA	CRISPRCasFinder
TGCAAGTTGGGGACGGGGCCCCAACACAGA--------GAAATTCG	PILER-CR

2 spacers

The CRISPR arrays of CP034441_13

>merge|CP034441|13|2543345-2543497|CRISPRCasFinder,PILER-CR
GTTATATTGGCGGGGCCCCAACACAGAGAAATTGGGACCCCAATTTCAACAGGCAATGGAAGTTGGGGACGGGGCCCCAACACAGAAGCTGACCAAAAGTCAGATTTCAATAATGTGCAAGTTGGGGATGGGGCCCCAACACAGAGAATTTCG

>CP034441|13|11|2543345-2543489|CRISPRCasFinder
GTTATATTGGCGGGGCCCCAACACAGA	GAAATTGGGACCCCAATTTCAACAGGCAATGG
AAGTTGGGGACGGGGCCCCAACACAGA	AGCTGACCAAAAGTCAGATTTCAATAATGTGC
AAGTTGGGGATGGGGCCCCAACACAGA

>CP034441|13|2|2543355-2543497|PILER-CR
CGGGGCCCCAACACAGAGAAATTGGGACCCCAATTTCA	ACAGGCAATGGAAGTTGGGGA
CGGGGCCCCAACACAGAAGCTGACCAAAAGTCAGATTT	CAATAATGTGCAAGTTGGGGATGGGGCCC
CAACACAGAGAATTTCG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	36480-36510	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	389046-389076	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	389162-389192	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	506493-506523	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	555223-555253	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	597176-597206	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1249227-1249257	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1249285-1249315	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1249343-1249373	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1274660-1274690	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1862280-1862310	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	2240934-2240964	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	2755649-2755679	0	1.0
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	2800289-2800319	0	1.0
CP034441_8	8.1\|1457980\|17\|CP034441\|PILER-CR	1457980-1457996	17	CP034441.1	602670-602686	0	1.0
CP034441_8	8.1\|1457980\|17\|CP034441\|PILER-CR	1457980-1457996	17	CP034441.1	602725-602741	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	32023-32038	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	36420-36435	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	244617-244632	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	389121-389136	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	554972-554987	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	590045-590060	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	590101-590116	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	1125728-1125743	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	1141066-1141081	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	1141338-1141353	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	1622996-1623011	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	1862220-1862235	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2231602-2231617	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2576228-2576243	0	1.0
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2800364-2800379	0	1.0
CP034441_1	1.1\|160791\|26\|CP034441\|CRISPRCasFinder	160791-160816	26	CP034441.1	554942-554967	1	0.962
CP034441_1	1.1\|160791\|26\|CP034441\|CRISPRCasFinder	160791-160816	26	CP034441.1	1125748-1125773	1	0.962
CP034441_6	6.1\|555267\|34\|CP034441\|CRISPRCasFinder	555267-555300	34	CP034441.1	36374-36407	1	0.971
CP034441_6	6.1\|555267\|34\|CP034441\|CRISPRCasFinder	555267-555300	34	CP034441.1	2800392-2800425	1	0.971
CP034441_7	7.1\|1125785\|32\|CP034441\|CRT	1125785-1125816	32	CP034441.1	2561682-2561713	1	0.969
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	486918-486948	1	0.968
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1141107-1141137	1	0.968
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	1622921-1622951	1	0.968
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	2543486-2543516	1	0.968
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	2755591-2755621	1	0.968
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	211943-211958	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	597306-597321	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	634257-634272	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2242352-2242367	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2393439-2393454	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2450763-2450778	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2561681-2561696	1	0.938
CP034441_8	8.2\|1458050\|16\|CP034441\|PILER-CR	1458050-1458065	16	CP034441.1	2843626-2843641	1	0.938
CP034441_1	1.1\|160791\|26\|CP034441\|CRISPRCasFinder	160791-160816	26	CP034441.1	590071-590096	2	0.923
CP034441_1	1.1\|160791\|26\|CP034441\|CRISPRCasFinder	160791-160816	26	CP034441.1	634221-634246	2	0.923
CP034441_1	1.1\|160791\|26\|CP034441\|CRISPRCasFinder	160791-160816	26	CP034441.1	634277-634302	2	0.923
CP034441_1	1.1\|160791\|26\|CP034441\|CRISPRCasFinder	160791-160816	26	CP034441.1	634333-634358	2	0.923
CP034441_3	3.4\|248643\|37\|CP034441\|CRT	248643-248679	37	CP034441.1	2127962-2127998	2	0.946
CP034441_7	7.1\|1125785\|32\|CP034441\|CRT	1125785-1125816	32	CP034441.1	2576211-2576242	2	0.938
CP034441_7	7.2\|1125841\|31\|CP034441\|CRT	1125841-1125871	31	CP034441.1	597234-597264	2	0.935
CP034441_7	7.3\|1125896\|32\|CP034441\|CRT	1125896-1125927	32	CP034441.1	2561682-2561713	2	0.938
CP034441_11	11.1\|1896509\|26\|CP034441\|CRISPRCasFinder	1896509-1896534	26	CP034441.1	244637-244662	2	0.923

1. spacer 7.2|1125841|31|CP034441|CRT matches to position: 36480-36510, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

2. spacer 7.2|1125841|31|CP034441|CRT matches to position: 389046-389076, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

3. spacer 7.2|1125841|31|CP034441|CRT matches to position: 389162-389192, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

4. spacer 7.2|1125841|31|CP034441|CRT matches to position: 506493-506523, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

5. spacer 7.2|1125841|31|CP034441|CRT matches to position: 555223-555253, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

6. spacer 7.2|1125841|31|CP034441|CRT matches to position: 597176-597206, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

7. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1249227-1249257, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

8. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1249285-1249315, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

9. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1249343-1249373, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

10. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1274660-1274690, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

11. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1862280-1862310, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

12. spacer 7.2|1125841|31|CP034441|CRT matches to position: 2240934-2240964, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

13. spacer 7.2|1125841|31|CP034441|CRT matches to position: 2755649-2755679, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

14. spacer 7.2|1125841|31|CP034441|CRT matches to position: 2800289-2800319, mismatch: 0, identity: 1.0

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctctg	Protospacer
*******************************

15. spacer 8.1|1457980|17|CP034441|PILER-CR matches to position: 602670-602686, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

16. spacer 8.1|1457980|17|CP034441|PILER-CR matches to position: 602725-602741, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

17. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 32023-32038, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

18. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 36420-36435, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

19. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 244617-244632, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

20. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 389121-389136, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

21. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 554972-554987, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

22. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 590045-590060, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

23. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 590101-590116, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

24. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 1125728-1125743, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

25. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 1141066-1141081, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

26. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 1141338-1141353, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

27. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 1622996-1623011, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

28. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 1862220-1862235, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

29. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2231602-2231617, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

30. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2576228-2576243, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

31. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2800364-2800379, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

32. spacer 1.1|160791|26|CP034441|CRISPRCasFinder matches to position: 554942-554967, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

33. spacer 1.1|160791|26|CP034441|CRISPRCasFinder matches to position: 1125748-1125773, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

34. spacer 6.1|555267|34|CP034441|CRISPRCasFinder matches to position: 36374-36407, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

35. spacer 6.1|555267|34|CP034441|CRISPRCasFinder matches to position: 2800392-2800425, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

36. spacer 7.1|1125785|32|CP034441|CRT matches to position: 2561682-2561713, mismatch: 1, identity: 0.969

attattgtaagctgactttccgccagcttcta	CRISPR spacer
attatcgtaagctgactttccgccagcttcta	Protospacer
*****.**************************

37. spacer 7.2|1125841|31|CP034441|CRT matches to position: 486918-486948, mismatch: 1, identity: 0.968

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttagaaattctctg	Protospacer
******************* ***********

38. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1141107-1141137, mismatch: 1, identity: 0.968

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcttttcgaaattctatg	Protospacer
**************************** **

39. spacer 7.2|1125841|31|CP034441|CRT matches to position: 1622921-1622951, mismatch: 1, identity: 0.968

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttcatttcgaaattctctg	Protospacer
*************** ***************

40. spacer 7.2|1125841|31|CP034441|CRT matches to position: 2543486-2543516, mismatch: 1, identity: 0.968

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgcctgtagaatttctttacgaaattctctg	Protospacer
****************** ************

41. spacer 7.2|1125841|31|CP034441|CRT matches to position: 2755591-2755621, mismatch: 1, identity: 0.968

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgtctgtagaatttcttttcgaaattctctg	Protospacer
**.****************************

42. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 211943-211958, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

43. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 597306-597321, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacgataatg	Protospacer
*********.******

44. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 634257-634272, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctaacaataatg	Protospacer
****** *********

45. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2242352-2242367, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacgataatg	Protospacer
*********.******

46. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2393439-2393454, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctttcaataatg	Protospacer
******* ********

47. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2450763-2450778, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttactataatg	Protospacer
********* ******

48. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2561681-2561696, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacgataatg	Protospacer
*********.******

49. spacer 8.2|1458050|16|CP034441|PILER-CR matches to position: 2843626-2843641, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

50. spacer 1.1|160791|26|CP034441|CRISPRCasFinder matches to position: 590071-590096, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctgtgttggggccccg	Protospacer
***.********.*************

51. spacer 1.1|160791|26|CP034441|CRISPRCasFinder matches to position: 634221-634246, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttttatgttggggccccg	Protospacer
***** ****.***************

52. spacer 1.1|160791|26|CP034441|CRISPRCasFinder matches to position: 634277-634302, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtctgcttctatgttggggccccg	Protospacer
***.* ********************

53. spacer 1.1|160791|26|CP034441|CRISPRCasFinder matches to position: 634333-634358, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ******.*************

54. spacer 3.4|248643|37|CP034441|CRT matches to position: 2127962-2127998, mismatch: 2, identity: 0.946

ctgttgaaattggtgatccaatttctctatgttgggg	CRISPR spacer
ctgtagaaattggtgttccaatttctctatgttgggg	Protospacer
**** ********** *********************

55. spacer 7.1|1125785|32|CP034441|CRT matches to position: 2576211-2576242, mismatch: 2, identity: 0.938

attattgtaagctgactttccgccagcttcta	CRISPR spacer
attattgtaagctgacttttcgtcagcttcta	Protospacer
*******************.**.*********

56. spacer 7.2|1125841|31|CP034441|CRT matches to position: 597234-597264, mismatch: 2, identity: 0.935

tgcctgtagaatttcttttcgaaattctctg	CRISPR spacer
tgtctgtagaaattcttttcgaaattctctg	Protospacer
**.******** *******************

57. spacer 7.3|1125896|32|CP034441|CRT matches to position: 2561682-2561713, mismatch: 2, identity: 0.938

attattgtatgctgactttccgccagcttcta	CRISPR spacer
attatcgtaagctgactttccgccagcttcta	Protospacer
*****.*** **********************

58. spacer 11.1|1896509|26|CP034441|CRISPRCasFinder matches to position: 244637-244662, mismatch: 2, identity: 0.923

cggggccccaacatagaaggtgacga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
*************.***** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034441_13	13.4\|2543452\|29\|CP034441\|PILER-CR	2543452-2543480	29	MT889391	Mycobacterium phage MiniMac, complete genome	11249-11277	7	0.759
CP034441_13	13.4\|2543452\|29\|CP034441\|PILER-CR	2543452-2543480	29	MT889383	Mycobacterium phage MiniLon, complete genome	11248-11276	7	0.759
CP034441_13	13.4\|2543452\|29\|CP034441\|PILER-CR	2543452-2543480	29	KT281791	Mycobacterium phage Lolly9, complete genome	11248-11276	7	0.759
CP034441_7	7.3\|1125896\|32\|CP034441\|CRT	1125896-1125927	32	NZ_CP044300	Escherichia coli strain P59A plasmid pP59A-2, complete sequence	114277-114308	8	0.75
CP034441_12	12.1\|2008010\|32\|CP034441\|CRISPRCasFinder	2008010-2008041	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	41454-41485	9	0.719
CP034441_13	13.2\|2543431\|32\|CP034441\|CRISPRCasFinder	2543431-2543462	32	MT889383	Mycobacterium phage MiniLon, complete genome	11248-11279	9	0.719
CP034441_13	13.2\|2543431\|32\|CP034441\|CRISPRCasFinder	2543431-2543462	32	KT281791	Mycobacterium phage Lolly9, complete genome	11248-11279	9	0.719
CP034441_12	12.1\|2008010\|32\|CP034441\|CRISPRCasFinder	2008010-2008041	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	296489-296520	10	0.688

1. spacer 13.4|2543452|29|CP034441|PILER-CR matches to MT889391 (Mycobacterium phage MiniMac, complete genome) position: , mismatch: 7, identity: 0.759

agctgaccaaaagtcagatttcaataatg	CRISPR spacer
tcaggacctaaagtcagatttcaagaagg	Protospacer
    **** *************** ** *

2. spacer 13.4|2543452|29|CP034441|PILER-CR matches to MT889383 (Mycobacterium phage MiniLon, complete genome) position: , mismatch: 7, identity: 0.759

agctgaccaaaagtcagatttcaataatg	CRISPR spacer
tcaggacctaaagtcagatttcaagaagg	Protospacer
    **** *************** ** *

3. spacer 13.4|2543452|29|CP034441|PILER-CR matches to KT281791 (Mycobacterium phage Lolly9, complete genome) position: , mismatch: 7, identity: 0.759

agctgaccaaaagtcagatttcaataatg	CRISPR spacer
tcaggacctaaagtcagatttcaagaagg	Protospacer
    **** *************** ** *

4. spacer 7.3|1125896|32|CP034441|CRT matches to NZ_CP044300 (Escherichia coli strain P59A plasmid pP59A-2, complete sequence) position: , mismatch: 8, identity: 0.75

attattgtatgctgactttccgccagcttcta	CRISPR spacer
tttaactaatgctgaagttccgccagcttctt	Protospacer
 *** .  *******  **************

5. spacer 12.1|2008010|32|CP034441|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

6. spacer 13.2|2543431|32|CP034441|CRISPRCasFinder matches to MT889383 (Mycobacterium phage MiniLon, complete genome) position: , mismatch: 9, identity: 0.719

agctgaccaaaagtcagatttcaataatgtgc	CRISPR spacer
tcaggacctaaagtcagatttcaagaaggggt	Protospacer
    **** *************** ** * *.

7. spacer 13.2|2543431|32|CP034441|CRISPRCasFinder matches to KT281791 (Mycobacterium phage Lolly9, complete genome) position: , mismatch: 9, identity: 0.719

agctgaccaaaagtcagatttcaataatgtgc	CRISPR spacer
tcaggacctaaagtcagatttcaagaaggggt	Protospacer
    **** *************** ** * *.

8. spacer 12.1|2008010|32|CP034441|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage