CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP018046	Pseudomonas stutzeri strain KGS-8 chromosome, complete genome	0 crisprs	csa3,DinG,DEDDh,cas3,PD-DExK,PrimPol	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

499650 : 574904

uncultured_Caudovirales_phage(50.0%)

portal,tail,protease,terminase,integrase,holin,capsid,plate,head

attL 515948:515963|attR 585417:585432

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO82610.1\|499650_501456_-	multidrug DMT transporter	H9C171	Pectobacterium_phage	1.3e-101	36.3
AZO82611.1\|501540_501798_+	hypothetical protein	NA	NA	NA	NA
AZO82612.1\|502065_502527_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	1.2e-46	60.1
AZO82613.1\|502946_503147_-	carbon storage regulator	J7I430	Pseudomonas_phage	2.2e-10	62.7
AZO82614.1\|503547_503796_-	hypothetical protein	NA	NA	NA	NA
AZO82615.1\|504014_504737_-	peptidase S24	F1C599	Cronobacter_phage	2.0e-48	50.0
AZO82616.1\|504843_505044_+	hypothetical protein	A0A2K8HL98	Pseudomonas_phage	3.8e-10	50.8
AZO82617.1\|505098_505719_+	hypothetical protein	NA	NA	NA	NA
AZO82618.1\|505777_506041_+	hypothetical protein	NA	NA	NA	NA
AZO82619.1\|506052_506829_+	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	1.0e-34	55.4
AZO82620.1\|507640_508141_+	hypothetical protein	H2BDI1	Pseudomonas_virus	2.3e-16	33.7
AZO87221.1\|508170_508380_+	hypothetical protein	NA	NA	NA	NA
AZO82621.1\|508376_509708_+\|integrase	integrase	A0A2D1GND4	Pseudomonas_phage	1.9e-121	50.4
AZO82622.1\|509676_509997_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.0e-24	51.9
AZO87222.1\|510012_510417_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	2.5e-37	58.6
AZO82623.1\|510732_511347_+	hypothetical protein	NA	NA	NA	NA
AZO82624.1\|511346_513263_+	peptidase C14	NA	NA	NA	NA
AZO87223.1\|514310_515210_+	hypothetical protein	NA	NA	NA	NA
AZO82625.1\|515466_515802_+\|holin	phage holin, lambda family	A0A2H4J1U5	uncultured_Caudovirales_phage	1.9e-25	55.2
AZO82626.1\|515930_516377_+	hypothetical protein	NA	NA	NA	NA
515948:515963	attL	NA	NA	NA	NA
AZO82627.1\|516844_517444_+\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	9.9e-54	57.5
AZO82628.1\|517447_519457_+\|terminase	terminase	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	81.8
AZO82629.1\|519511_519718_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	3.8e-21	75.0
AZO82630.1\|519717_521202_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	1.2e-236	82.0
AZO82631.1\|521198_522347_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.5e-146	73.0
AZO82632.1\|522343_522688_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	9.4e-33	67.5
AZO82633.1\|522750_523746_+\|capsid	major capsid protein E	A0A2H4J890	uncultured_Caudovirales_phage	4.7e-157	81.9
AZO82634.1\|523748_524063_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	3.6e-31	63.2
AZO82635.1\|524059_524695_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	3.8e-72	67.2
AZO82636.1\|524687_525251_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.0e-49	58.0
AZO82637.1\|525217_525778_+\|plate	phage baseplate protein	A0A2H4JG06	uncultured_Caudovirales_phage	1.1e-49	72.3
AZO82638.1\|525835_526057_+	hypothetical protein	NA	NA	NA	NA
AZO87224.1\|526070_526397_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	8.6e-36	66.7
AZO82639.1\|526393_527281_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	8.8e-99	62.3
AZO82640.1\|527277_527889_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	7.0e-63	64.6
AZO82641.1\|527881_529321_+	hypothetical protein	A0A077K818	Ralstonia_phage	1.9e-90	44.1
AZO82642.1\|530188_530776_+	hypothetical protein	NA	NA	NA	NA
AZO82643.1\|530878_532042_+\|tail	phage tail protein	A0A2H4J869	uncultured_Caudovirales_phage	8.9e-168	76.4
AZO82644.1\|532054_532558_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	2.3e-64	71.2
AZO82645.1\|532569_532878_+	hypothetical protein	NA	NA	NA	NA
AZO82646.1\|535377_536235_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	6.7e-104	65.2
AZO87225.1\|536209_536416_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.6e-19	68.7
AZO82647.1\|536468_537503_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.2e-142	72.2
AZO82648.1\|537704_538499_+	restriction endonuclease subunit M	C7BGE1	Burkholderia_phage	3.2e-100	66.2
AZO82649.1\|538811_542483_+	hypothetical protein	NA	NA	NA	NA
AZO82650.1\|542470_543028_+	hypothetical protein	NA	NA	NA	NA
AZO87226.1\|543256_543730_-	isoprenylcysteine carboxyl methyltransferase	NA	NA	NA	NA
AZO82651.1\|543751_544645_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
AZO82652.1\|544756_545407_+	TetR family transcriptional regulator	NA	NA	NA	NA
AZO82653.1\|545610_545820_-	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	3.6e-11	55.6
AZO87227.1\|547453_547660_-	hypothetical protein	NA	NA	NA	NA
AZO82654.1\|548132_548951_+	diaminopimelate epimerase	NA	NA	NA	NA
AZO82655.1\|549140_550547_+	cardiolipin synthase	NA	NA	NA	NA
AZO87228.1\|550794_551229_+	hypothetical protein	NA	NA	NA	NA
AZO82656.1\|551225_552686_+	protein kinase	NA	NA	NA	NA
AZO82657.1\|552695_553733_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.3e-20	28.4
AZO82658.1\|554090_555638_+	phospholipase	NA	NA	NA	NA
AZO82659.1\|555792_556290_+	hypothetical protein	NA	NA	NA	NA
AZO82660.1\|556286_556892_+	hypothetical protein	NA	NA	NA	NA
AZO82661.1\|557015_557210_-	hypothetical protein	NA	NA	NA	NA
AZO82662.1\|557341_557635_+	hypothetical protein	NA	NA	NA	NA
AZO82663.1\|557651_557936_-	hypothetical protein	NA	NA	NA	NA
AZO82664.1\|558143_558374_-	hypothetical protein	NA	NA	NA	NA
AZO82665.1\|558503_558725_-	hypothetical protein	NA	NA	NA	NA
AZO82666.1\|558797_559823_-	DNA topoisomerase	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	3.9e-42	33.0
AZO82667.1\|559898_560978_-	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.9e-21	31.9
AZO82668.1\|560981_561662_-	molybdenum ABC transporter permease subunit	NA	NA	NA	NA
AZO82669.1\|561663_562431_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
AZO82670.1\|562555_563623_-	2-nitropropane dioxygenase	NA	NA	NA	NA
AZO82671.1\|563836_564820_+	alcohol dehydrogenase	NA	NA	NA	NA
AZO82672.1\|564820_565885_-	bifunctional transcriptional activator/DNA repair enzyme protein Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.3e-19	52.2
AZO82673.1\|565972_566653_-	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	NA	NA	NA
AZO82674.1\|566642_567347_-	proline hydroxylase	NA	NA	NA	NA
AZO82675.1\|567669_567972_-	hypothetical protein	NA	NA	NA	NA
AZO82676.1\|568173_568530_+	hypothetical protein	NA	NA	NA	NA
AZO82677.1\|568843_569125_-	hypothetical protein	NA	NA	NA	NA
AZO82678.1\|569261_569450_-	hypothetical protein	NA	NA	NA	NA
AZO82679.1\|569739_570579_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	5.1e-64	46.8
AZO82680.1\|570916_572431_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	6.0e-23	28.7
AZO82681.1\|572538_573897_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	3.0e-50	28.9
AZO82682.1\|573893_574904_-\|integrase	integrase	NA	NA	NA	NA
585417:585432	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1674156 : 1680421

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO83516.1\|1674156_1674549_+	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.9e-53	80.6
AZO83517.1\|1674550_1674913_+	sulfurtransferase TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.8e-42	69.2
AZO83518.1\|1674912_1675206_+	sulfur relay protein DsrH	A0A2H4JG28	uncultured_Caudovirales_phage	6.8e-32	69.7
AZO83519.1\|1675202_1675538_+	sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.6e-45	79.3
AZO83520.1\|1675534_1676536_+	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.7e-162	85.1
AZO83521.1\|1676627_1677629_+	glutathione-dependent reductase	NA	NA	NA	NA
AZO83522.1\|1679140_1680421_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-98	54.2

DBSCAN-SWA_3

5221685 : 5229430

Pseudomonas_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZO86387.1\|5221685_5222693_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZO86388.1\|5223164_5223488_-	ferredoxin	NA	NA	NA	NA
AZO86389.1\|5223630_5226210_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	23.3
AZO87371.1\|5226420_5227155_+	transcriptional regulator	B5TK58	Pseudomonas_phage	2.0e-128	92.2
AZO86390.1\|5227329_5227671_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.5e-38	67.6
AZO87372.1\|5227787_5228288_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	1.8e-69	82.5
AZO86391.1\|5228371_5229430_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.0e-110	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage