CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034465	Jeotgalibaca sp. H21T32 chromosome, complete genome	0 crisprs	cas3,csa3,DEDDh,cas6,cas1,cas2,DinG	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

206310 : 230871

Streptococcus_phage(80.0%)

integrase

attL 224959:224974|attR 233758:233773

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP03360.1\|206310_207459_+	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	A0A218MNE0	uncultured_virus	8.3e-49	34.6
AZP03361.1\|208042_208357_+	DUF961 domain-containing protein	A0A1S5SF38	Streptococcus_phage	7.0e-43	76.7
AZP03362.1\|208377_208755_+	DUF961 domain-containing protein	A0A1S5SF96	Streptococcus_phage	5.6e-47	77.2
AZP03363.1\|208764_209538_+	hypothetical protein	NA	NA	NA	NA
AZP03364.1\|209559_210963_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	8.8e-178	67.0
AZP03365.1\|211144_212329_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	1.0e-158	67.9
AZP03366.1\|212325_212598_+	hypothetical protein	NA	NA	NA	NA
AZP03367.1\|212594_212816_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
AZP03368.1\|212857_213637_+	hypothetical protein	NA	NA	NA	NA
AZP03369.1\|213698_214199_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.2e-52	61.1
AZP03370.1\|214270_215296_+	hypothetical protein	NA	NA	NA	NA
AZP03371.1\|215366_215762_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	4.4e-50	75.0
AZP03372.1\|215745_218199_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	79.1
AZP03373.1\|218195_220223_+	hypothetical protein	A0A1S5SF30	Streptococcus_phage	5.1e-195	65.3
AZP03374.1\|220219_221242_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	4.1e-132	75.5
AZP05632.1\|221249_222188_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
AZP05633.1\|222462_222549_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
AZP03375.1\|222564_224484_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.0
AZP03376.1\|224602_224770_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	2.3e-13	62.0
AZP03377.1\|224827_225181_-	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
224959:224974	attL	NA	NA	NA	NA
AZP03378.1\|225412_225523_+	hypothetical protein	NA	NA	NA	NA
AZP03379.1\|225651_226134_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	5.5e-47	67.9
AZP03380.1\|226130_226361_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
AZP03381.1\|226858_227059_+	DUF3173 domain-containing protein	NA	NA	NA	NA
AZP03382.1\|227085_228279_+\|integrase	site-specific integrase	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
AZP03383.1\|228346_229900_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	5.6e-16	28.2
AZP03384.1\|229947_230871_-	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	1.5e-29	32.8
233758:233773	attR	NA	NA	NA	NA

DBSCAN-SWA_2

676065 : 688136

Erysipelothrix_phage(100.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP05662.1\|676065_677610_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	6.1e-257	93.2
AZP03739.1\|677629_678046_-	recombinase	A0A2K5B2B3	Erysipelothrix_phage	5.6e-72	99.3
AZP03740.1\|678046_679609_-	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	6.6e-291	96.7
AZP03741.1\|679670_679889_-	hypothetical protein	A0A2K5B2B1	Erysipelothrix_phage	3.2e-26	83.3
AZP03742.1\|679944_681885_-	hypothetical protein	A0A2K5B2B0	Erysipelothrix_phage	0.0e+00	93.8
AZP03743.1\|681958_682510_-	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	9.0e-102	100.0
AZP03744.1\|682515_683652_-	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	9.5e-215	96.0
AZP03745.1\|683644_683962_-	rRNA biogenesis protein rrp5	A0A2K5B2A7	Erysipelothrix_phage	1.5e-48	97.1
AZP03746.1\|683936_684155_-	hypothetical protein	A0A2I4R673	Erysipelothrix_phage	1.8e-29	93.1
AZP05663.1\|684285_684372_-	hypothetical protein	NA	NA	NA	NA
AZP03747.1\|684435_684789_+	XRE family transcriptional regulator	A0A2K5B2A6	Erysipelothrix_phage	2.0e-54	89.7
AZP03748.1\|684845_685037_-	conjugal transfer protein	NA	NA	NA	NA
AZP03749.1\|685079_685625_-	N-acetyltransferase	NA	NA	NA	NA
AZP03750.1\|685636_686233_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AZP03751.1\|686429_686765_-	conjugal transfer protein	A0A2K5B2A4	Erysipelothrix_phage	6.1e-45	97.8
AZP03752.1\|686871_687810_-	1,4-beta-N-acetylmuramidase	A0A2K5B2A3	Erysipelothrix_phage	2.8e-148	92.8
AZP03753.1\|687812_688136_-\|holin	holin	A0A2K5B2A2	Erysipelothrix_phage	1.0e-36	88.4

DBSCAN-SWA_3

697928 : 704329

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP03759.1\|697928_698138_-	transcriptional regulator	A0A139ZPI6	Marinitoga_camini_virus	4.1e-07	39.7
AZP03760.1\|698997_700398_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A1X9I6F4	Streptococcus_phage	3.6e-54	31.1
AZP03761.1\|700610_700796_-	hypothetical protein	NA	NA	NA	NA
AZP03762.1\|700832_701294_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.3e-41	58.4
AZP03763.1\|701347_702541_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.8e-107	49.7
AZP03764.1\|702559_703213_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.1e-25	40.2
AZP03765.1\|703240_704329_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.3e-48	36.7

DBSCAN-SWA_4

1140231 : 1148436

Enterococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP04120.1\|1140231_1141125_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.6e-60	46.0
AZP04121.1\|1141303_1141771_+	hypothetical protein	NA	NA	NA	NA
AZP05700.1\|1141887_1142862_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.2e-117	65.0
AZP04122.1\|1142898_1145097_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	4.3e-272	64.0
AZP04123.1\|1145083_1145452_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A1W6JL40	Lactococcus_phage	6.1e-14	40.2
AZP04124.1\|1145448_1145679_-	glutaredoxin family protein	NA	NA	NA	NA
AZP04125.1\|1145692_1146247_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	1.6e-53	58.8
AZP04126.1\|1146264_1148436_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	7.3e-256	60.7

DBSCAN-SWA_5

1735571 : 1743718

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP04619.1\|1735571_1736462_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.2e-10	31.4
AZP04620.1\|1736458_1737469_+	YvcK family protein	A1IMD5	Streptococcus_phage	3.5e-83	48.0
AZP04621.1\|1737508_1738450_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.8e-52	37.0
AZP04622.1\|1738508_1738859_-	single-stranded DNA-binding protein	L0P8Q2	Lactobacillus_phage	2.1e-19	43.9
AZP04623.1\|1739033_1739744_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.5e-29	33.0
AZP05733.1\|1739779_1741168_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
AZP04624.1\|1741522_1743718_-	LTA synthase family protein	W6LM83	Streptococcus_phage	1.9e-163	45.4

DBSCAN-SWA_6

2083867 : 2148057

Escherichia_phage(17.65%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP04896.1\|2083867_2084788_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
AZP04897.1\|2084797_2085268_+	hypothetical protein	NA	NA	NA	NA
AZP04898.1\|2085766_2087083_+	hypothetical protein	NA	NA	NA	NA
AZP04899.1\|2087096_2087444_+	cupin domain-containing protein	NA	NA	NA	NA
AZP04900.1\|2088515_2089640_+\|transposase	IS4 family transposase	NA	NA	NA	NA
AZP04901.1\|2089829_2090135_+	hypothetical protein	NA	NA	NA	NA
AZP04902.1\|2090739_2091858_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AZP05751.1\|2091893_2092514_+	sugar transferase	NA	NA	NA	NA
AZP04903.1\|2092517_2093477_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZP04904.1\|2093469_2093961_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZP04905.1\|2094025_2094985_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
AZP04906.1\|2095116_2096217_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AZP04907.1\|2096533_2097796_+	hypothetical protein	NA	NA	NA	NA
AZP04908.1\|2097847_2098636_+	glycosyltransferase	NA	NA	NA	NA
AZP04909.1\|2098769_2100188_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
AZP04910.1\|2100449_2101193_+	chain-length determining protein	NA	NA	NA	NA
AZP04911.1\|2101192_2101903_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
AZP04912.1\|2102029_2102803_+	tyrosine protein phosphatase	NA	NA	NA	NA
AZP05752.1\|2102859_2104644_+	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	2.4e-26	30.5
AZP04913.1\|2104705_2105722_+	SDR family NAD(P)-dependent oxidoreductase	A0A2K9L4U8	Tupanvirus	6.9e-39	35.0
AZP04914.1\|2105742_2106939_+	galactokinase	NA	NA	NA	NA
AZP04915.1\|2106939_2107677_+	nucleotidyltransferase family protein	NA	NA	NA	NA
AZP04916.1\|2108257_2108716_+\|transposase	transposase	S5VTP8	Leptospira_phage	9.7e-09	33.6
AZP04917.1\|2109149_2110304_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AZP04918.1\|2110340_2111258_+	glycosyltransferase	NA	NA	NA	NA
AZP04919.1\|2111299_2112481_+	hypothetical protein	NA	NA	NA	NA
AZP05753.1\|2112498_2113491_+	hypothetical protein	NA	NA	NA	NA
AZP05754.1\|2113717_2115103_+	hypothetical protein	NA	NA	NA	NA
AZP04920.1\|2115118_2116270_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AZP04921.1\|2116707_2118123_+	sugar transferase	NA	NA	NA	NA
AZP04922.1\|2118192_2119068_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.8e-104	63.5
AZP04923.1\|2119079_2119646_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.5e-38	45.2
AZP04924.1\|2119665_2120694_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.3e-69	42.7
AZP04925.1\|2120752_2121595_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.2e-34	37.3
AZP04926.1\|2121764_2122883_+	transcriptional regulator	NA	NA	NA	NA
AZP04927.1\|2122901_2123864_+	transcriptional regulator	NA	NA	NA	NA
AZP04928.1\|2123888_2124905_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	5.9e-99	53.8
AZP04929.1\|2125116_2126436_+	nucleotide sugar dehydrogenase	M1I6A7	Acanthocystis_turfacea_Chlorella_virus	3.9e-26	29.3
AZP04930.1\|2126551_2127430_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.0e-67	46.0
AZP04931.1\|2127447_2128614_+	nucleotide sugar dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	8.8e-115	56.4
AZP04932.1\|2128754_2129966_-\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	2.0e-122	90.0
AZP04933.1\|2130291_2131293_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.7e-13	40.0
AZP04934.1\|2131304_2132249_+	glycosyltransferase	NA	NA	NA	NA
AZP04935.1\|2132214_2133384_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AZP04936.1\|2133396_2134176_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AZP04937.1\|2134191_2135544_+	O-antigen ligase domain-containing protein	NA	NA	NA	NA
AZP04938.1\|2135536_2136598_+	hypothetical protein	NA	NA	NA	NA
AZP04939.1\|2136612_2137365_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AZP04940.1\|2137443_2138655_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	2.0e-122	90.0
AZP04941.1\|2138771_2140244_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
AZP04942.1\|2140377_2143128_+	hypothetical protein	A0A0N9SGH1	Paenibacillus_phage	1.2e-21	35.3
AZP04943.1\|2143266_2145156_+	hypothetical protein	S5M9Y4	Brevibacillus_phage	2.6e-23	39.9
AZP04944.1\|2145351_2145924_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZP04945.1\|2145915_2146644_-	AAA family ATPase	A0A059NT77	Lactococcus_phage	1.3e-36	38.6
AZP04946.1\|2146644_2148057_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2572411 : 2580596

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP05294.1\|2572411_2573302_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.7e-38	34.1
AZP05295.1\|2573334_2574507_+	phosphopentomutase	NA	NA	NA	NA
AZP05296.1\|2574537_2575353_+	purine-nucleoside phosphorylase	Q5YBA4	Grouper_iridovirus	5.7e-60	42.7
AZP05297.1\|2575487_2575877_+	N-acetyltransferase	NA	NA	NA	NA
AZP05298.1\|2575873_2576650_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-08	26.8
AZP05299.1\|2576642_2577257_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.0e-18	35.9
AZP05300.1\|2577290_2578013_+	rRNA pseudouridine synthase	NA	NA	NA	NA
AZP05775.1\|2578065_2578800_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.4e-47	44.5
AZP05301.1\|2578799_2580596_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	6.0e-30	36.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage