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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034102 Staphylococcus aureus strain O267 chromosome, complete genome 13 crisprs cas3,DEDDh,DinG,csa3,WYL 9 5 13 0

Results visualization

1. CP034102
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_1 650683-650765 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_2 749033-749132 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_3 847978-848128 Unclear NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_4 896214-896347 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_6 1073627-1073723 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_7 1198386-1198466 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_8 1938754-1938900 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_9 1968718-1968800 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_10 2120920-2120999 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_11 2264278-2264367 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_12 2384172-2384390 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_13 2449612-2449698 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034102_14 2829032-2829110 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 258384-258399 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 650678-650693 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 848125-848140 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1057433-1057448 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1057491-1057506 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1411580-1411595 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1486886-1486901 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1486944-1486959 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1487001-1487016 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1687921-1687936 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 1707526-1707541 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 2399674-2399689 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 2418809-2418824 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 2858423-2858438 0 1.0
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 2858481-2858496 0 1.0
CP034102_10 10.1|2120943|34|CP034102|CRISPRCasFinder 2120943-2120976 34 CP034102.1 961397-961430 0 1.0
CP034102_10 10.1|2120943|34|CP034102|CRISPRCasFinder 2120943-2120976 34 CP034102.1 1198356-1198389 0 1.0
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 815571-815588 0 1.0
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 1202337-1202354 0 1.0
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 2525628-2525645 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 650672-650702 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 848116-848146 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1057424-1057454 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1057482-1057512 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1411574-1411604 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1486877-1486907 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1486935-1486965 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1486992-1487022 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 2399668-2399698 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 2418803-2418833 0 1.0
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 2858414-2858444 0 1.0
CP034102_1 1.1|650707|35|CP034102|CRISPRCasFinder 650707-650741 35 CP034102.1 2418838-2418872 1 0.971
CP034102_3 3.2|848083|16|CP034102|PILER-CR 848083-848098 16 CP034102.1 692487-692502 1 0.938
CP034102_4 4.1|896234|39|CP034102|PILER-CR 896234-896272 39 CP034102.1 569405-569443 1 0.974
CP034102_10 10.1|2120943|34|CP034102|CRISPRCasFinder 2120943-2120976 34 CP034102.1 801921-801954 1 0.971
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 1851071-1851088 1 0.944
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1687915-1687945 1 0.968
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 2858472-2858502 1 0.968
CP034102_1 1.1|650707|35|CP034102|CRISPRCasFinder 650707-650741 35 CP034102.1 1057385-1057419 2 0.943
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 43271-43306 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 142921-142956 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 569291-569326 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 650784-650819 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 1687970-1688005 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2160486-2160521 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2418915-2418950 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2418971-2419006 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2419027-2419062 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2419083-2419118 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2419139-2419174 2 0.944
CP034102_4 4.2|896293|36|CP034102|PILER-CR 896293-896328 36 CP034102.1 2554963-2554998 2 0.944
CP034102_7 7.1|1198410|33|CP034102|CRISPRCasFinder 1198410-1198442 33 CP034102.1 2829014-2829046 2 0.939
CP034102_10 10.1|2120943|34|CP034102|CRISPRCasFinder 2120943-2120976 34 CP034102.1 1415927-1415960 2 0.941
CP034102_10 10.1|2120943|34|CP034102|CRISPRCasFinder 2120943-2120976 34 CP034102.1 2113753-2113786 2 0.941
CP034102_12 12.1|2384213|18|CP034102|CRT 2384213-2384230 18 CP034102.1 904868-904885 2 0.889
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 488207-488224 2 0.889
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 692499-692516 2 0.889
CP034102_12 12.2|2384272|18|CP034102|CRT 2384272-2384289 18 CP034102.1 1795946-1795963 2 0.889
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 569407-569437 2 0.935
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 961387-961417 2 0.935
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1707517-1707547 2 0.935
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 CP034102.1 1795954-1795984 2 0.935

1. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 258384-258399, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

2. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 650678-650693, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

3. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 848125-848140, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

4. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1057433-1057448, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

5. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1057491-1057506, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

6. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1411580-1411595, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

7. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1486886-1486901, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

8. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1486944-1486959, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

9. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1487001-1487016, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

10. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1687921-1687936, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

11. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 1707526-1707541, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

12. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 2399674-2399689, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

13. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 2418809-2418824, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

14. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 2858423-2858438, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

15. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 2858481-2858496, mismatch: 0, identity: 1.0

cctgtagaatttcttt	CRISPR spacer
cctgtagaatttcttt	Protospacer
****************

16. spacer 10.1|2120943|34|CP034102|CRISPRCasFinder matches to position: 961397-961430, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

17. spacer 10.1|2120943|34|CP034102|CRISPRCasFinder matches to position: 1198356-1198389, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

18. spacer 12.2|2384272|18|CP034102|CRT matches to position: 815571-815588, mismatch: 0, identity: 1.0

ctttttgaaattctctat	CRISPR spacer
ctttttgaaattctctat	Protospacer
******************

19. spacer 12.2|2384272|18|CP034102|CRT matches to position: 1202337-1202354, mismatch: 0, identity: 1.0

ctttttgaaattctctat	CRISPR spacer
ctttttgaaattctctat	Protospacer
******************

20. spacer 12.2|2384272|18|CP034102|CRT matches to position: 2525628-2525645, mismatch: 0, identity: 1.0

ctttttgaaattctctat	CRISPR spacer
ctttttgaaattctctat	Protospacer
******************

21. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 650672-650702, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

22. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 848116-848146, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

23. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1057424-1057454, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

24. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1057482-1057512, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

25. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1411574-1411604, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

26. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1486877-1486907, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

27. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1486935-1486965, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

28. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1486992-1487022, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

29. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 2399668-2399698, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

30. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 2418803-2418833, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

31. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 2858414-2858444, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

32. spacer 1.1|650707|35|CP034102|CRISPRCasFinder matches to position: 2418838-2418872, mismatch: 1, identity: 0.971

ggtgtgggccccaacaaagagaaattggattccca	CRISPR spacer
ggtgtgggccccaacacagagaaattggattccca	Protospacer
**************** ******************

33. spacer 3.2|848083|16|CP034102|PILER-CR matches to position: 692487-692502, mismatch: 1, identity: 0.938

cctgtagaatttcttt	CRISPR spacer
cccgtagaatttcttt	Protospacer
**.*************

34. spacer 4.1|896234|39|CP034102|PILER-CR matches to position: 569405-569443, mismatch: 1, identity: 0.974

gatttcgaaaagaaattctacaaacaatgcaagttgggg	CRISPR spacer
gatttcgaaaagaaattctacagacaatgcaagttgggg	Protospacer
**********************.****************

35. spacer 10.1|2120943|34|CP034102|CRISPRCasFinder matches to position: 801921-801954, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctttgttgg	Protospacer
*************************** ******

36. spacer 12.2|2384272|18|CP034102|CRT matches to position: 1851071-1851088, mismatch: 1, identity: 0.944

ctttttgaaattctctat	CRISPR spacer
cttttcgaaattctctat	Protospacer
*****.************

37. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1687915-1687945, mismatch: 1, identity: 0.968

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcctgtagaatttcttttcgaaa	Protospacer
**.****************************

38. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 2858472-2858502, mismatch: 1, identity: 0.968

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcctgtagaatttcttttcgaaa	Protospacer
**.****************************

39. spacer 1.1|650707|35|CP034102|CRISPRCasFinder matches to position: 1057385-1057419, mismatch: 2, identity: 0.943

ggtgtgggccccaacaaagagaaattggattccca	CRISPR spacer
ggtggtggccccaacaaagagaaattggattccca	Protospacer
****  *****************************

40. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 43271-43306, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

41. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 142921-142956, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

42. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 569291-569326, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctgtcggaaagtcagcatacaataatgtgcaagtt	Protospacer
**** ******* ***********************

43. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 650784-650819, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

44. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 1687970-1688005, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

45. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2160486-2160521, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

46. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2418915-2418950, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

47. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2418971-2419006, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

48. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2419027-2419062, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

49. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2419083-2419118, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

50. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2419139-2419174, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

51. spacer 4.2|896293|36|CP034102|PILER-CR matches to position: 2554963-2554998, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

52. spacer 7.1|1198410|33|CP034102|CRISPRCasFinder matches to position: 2829014-2829046, mismatch: 2, identity: 0.939

ccccaacagagagaaattggatcaccaatttca	CRISPR spacer
ccccaacatagagaaattggaacaccaatttca	Protospacer
******** ************ ***********

53. spacer 10.1|2120943|34|CP034102|CRISPRCasFinder matches to position: 1415927-1415960, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtgggatttcttttcgaaattctctgtgttgg	Protospacer
****.*.***************************

54. spacer 10.1|2120943|34|CP034102|CRISPRCasFinder matches to position: 2113753-2113786, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttttcgaatttcttttcgaaattctctgtgttgg	Protospacer
** * *****************************

55. spacer 12.1|2384213|18|CP034102|CRT matches to position: 904868-904885, mismatch: 2, identity: 0.889

acttttgtcagcttctgt	CRISPR spacer
acctttgtcagcttcagt	Protospacer
**.************ **

56. spacer 12.2|2384272|18|CP034102|CRT matches to position: 488207-488224, mismatch: 2, identity: 0.889

ctttttgaaattctctat	CRISPR spacer
cttttttaaattctccat	Protospacer
****** ********.**

57. spacer 12.2|2384272|18|CP034102|CRT matches to position: 692499-692516, mismatch: 2, identity: 0.889

ctttttgaaattctctat	CRISPR spacer
cttttcgaaattctttat	Protospacer
*****.********.***

58. spacer 12.2|2384272|18|CP034102|CRT matches to position: 1795946-1795963, mismatch: 2, identity: 0.889

ctttttgaaattctctat	CRISPR spacer
cttttcgaaattctccat	Protospacer
*****.*********.**

59. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 569407-569437, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgtctgtagaatttcttttcgaaa	Protospacer
**.******.*********************

60. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 961387-961417, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcttgtagaatttcttttcgaaa	Protospacer
**.*******.********************

61. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1707517-1707547, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcctgtagaatttctttacgaaa	Protospacer
**.********************** *****

62. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to position: 1795954-1795984, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgtctgtagaatttcttttcgaaa	Protospacer
**.******.*********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP034102_8 8.1|1938777|39|CP034102|CRISPRCasFinder 1938777-1938815 39 NC_007065 Staphylococcus phage X2, complete genome 30950-30988 0 1.0
CP034102_8 8.1|1938777|39|CP034102|CRISPRCasFinder 1938777-1938815 39 AY954968 Bacteriophage X2, complete genome 30950-30988 0 1.0
CP034102_8 8.2|1938839|39|CP034102|CRISPRCasFinder 1938839-1938877 39 NC_007065 Staphylococcus phage X2, complete genome 30888-30926 0 1.0
CP034102_8 8.2|1938839|39|CP034102|CRISPRCasFinder 1938839-1938877 39 AY954968 Bacteriophage X2, complete genome 30888-30926 0 1.0
CP034102_6 6.1|1073661|29|CP034102|CRISPRCasFinder 1073661-1073689 29 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 703321-703349 6 0.793
CP034102_13 13.1|2449639|33|CP034102|CRISPRCasFinder 2449639-2449671 33 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 164873-164905 8 0.758
CP034102_13 13.1|2449639|33|CP034102|CRISPRCasFinder 2449639-2449671 33 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 498457-498489 8 0.758
CP034102_14 14.1|2829056|31|CP034102|CRISPRCasFinder 2829056-2829086 31 NZ_CP009619 Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence 270870-270900 8 0.742

1. spacer 8.1|1938777|39|CP034102|CRISPRCasFinder matches to NC_007065 (Staphylococcus phage X2, complete genome) position: , mismatch: 0, identity: 1.0

ttaaaattttaaaaattagcactgctgaagtgcttaagt	CRISPR spacer
ttaaaattttaaaaattagcactgctgaagtgcttaagt	Protospacer
***************************************

2. spacer 8.1|1938777|39|CP034102|CRISPRCasFinder matches to AY954968 (Bacteriophage X2, complete genome) position: , mismatch: 0, identity: 1.0

ttaaaattttaaaaattagcactgctgaagtgcttaagt	CRISPR spacer
ttaaaattttaaaaattagcactgctgaagtgcttaagt	Protospacer
***************************************

3. spacer 8.2|1938839|39|CP034102|CRISPRCasFinder matches to NC_007065 (Staphylococcus phage X2, complete genome) position: , mismatch: 0, identity: 1.0

cgtgtcaatactaattttcgtatttttttatttgtttta	CRISPR spacer
cgtgtcaatactaattttcgtatttttttatttgtttta	Protospacer
***************************************

4. spacer 8.2|1938839|39|CP034102|CRISPRCasFinder matches to AY954968 (Bacteriophage X2, complete genome) position: , mismatch: 0, identity: 1.0

cgtgtcaatactaattttcgtatttttttatttgtttta	CRISPR spacer
cgtgtcaatactaattttcgtatttttttatttgtttta	Protospacer
***************************************

5. spacer 6.1|1073661|29|CP034102|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 6, identity: 0.793

taaaagagggatacttgcgctgagcgcat	CRISPR spacer
gatcaaagggttccttgcgctgagcgcat	Protospacer
 *  *.**** * ****************

6. spacer 13.1|2449639|33|CP034102|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcaactgtataccttttgcctttaacttaagtt	CRISPR spacer
ttatagttataccttttgcttttaatttaagtg	Protospacer
*.*    ************.*****.****** 

7. spacer 13.1|2449639|33|CP034102|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcaactgtataccttttgcctttaacttaagtt	CRISPR spacer
ttatagttataccttttgcttttaatttaagtg	Protospacer
*.*    ************.*****.****** 

8. spacer 14.1|2829056|31|CP034102|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.742

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
gctgcattacctgtagcatttcttttttcaa	Protospacer
 ..*****.******* *********.  **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 320252 : 382430 90 Staphylococcus_phage(78.16%) protease,head,terminase,portal,tail,holin,capsid,integrase attL 320141:320159|attR 384600:384618
DBSCAN-SWA_2 447602 : 464097 20 Staphylococcus_phage(42.86%) integrase,capsid attL 450621:450644|attR 464365:464388
DBSCAN-SWA_3 780017 : 787838 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 803616 : 814246 8 uncultured_Caudovirales_phage(71.43%) NA NA
DBSCAN-SWA_5 1058858 : 1067331 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1118889 : 1164537 73 Staphylococcus_phage(47.06%) terminase,head,portal,tail,holin,capsid NA
DBSCAN-SWA_7 1644992 : 1653304 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1722704 : 1731747 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1855829 : 1900888 41 Staphylococcus_phage(94.29%) protease,tRNA NA
DBSCAN-SWA_10 1908075 : 1928629 15 Staphylococcus_phage(100.0%) protease NA
DBSCAN-SWA_11 1932511 : 1942425 18 Staphylococcus_virus(50.0%) integrase attL 1921527:1921545|attR 1949282:1949300
DBSCAN-SWA_12 1970044 : 2047050 89 Staphylococcus_phage(69.7%) protease,head,portal,tail,holin,capsid,integrase,tRNA attL 2012913:2012927|attR 2048607:2048621
DBSCAN-SWA_13 2129042 : 2140549 14 Staphylococcus_phage(45.45%) capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage