CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034483	Rahnella aquatilis strain KM05 chromosome, complete genome	2 crisprs	DEDDh,PD-DExK,DinG,WYL,cas3,csa3	0	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034483_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034483_1

1998046-1998313

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGGACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGNACAGGCAGCTTAGAAA	CRT

4 spacers

The CRISPR arrays of CP034483_1

>merge|CP034483|1|1998046-1998313|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGGACAGGCAGCTTAGAAAATACGATCGCAACGTCTGTCATAGCGGTGTGCGTTCACTGCCGGACAGGCAGCTTAGAAAGCTGAGTGCACGGTGTTGATCGCATTCTCAATGTTCACTGCCGCACAGGCAGCTTAGAAATCGGATAGCAATCTTGTTCAATAGCTGACTCTGTTCACTGCCGCACAGGCAGCTTAGAAAGTTACTGATGTCGTAATCAATAATCGACTGAAGTTCACTGCCGCACAGGCAGCTTAGAAA

>CP034483|1|1|1998046-1998313|PILER-CR
GTTCACTGCCGGACAGGCAGCTTAGAAA	ATACGATCGCAACGTCTGTCATAGCGGTGTGC
GTTCACTGCCGGACAGGCAGCTTAGAAA	GCTGAGTGCACGGTGTTGATCGCATTCTCAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGGATAGCAATCTTGTTCAATAGCTGACTCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTACTGATGTCGTAATCAATAATCGACTGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>CP034483|1|1|1998046-1998313|CRISPRCasFinder
GTTCACTGCCGGACAGGCAGCTTAGAAA	ATACGATCGCAACGTCTGTCATAGCGGTGTGC
GTTCACTGCCGGACAGGCAGCTTAGAAA	GCTGAGTGCACGGTGTTGATCGCATTCTCAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGGATAGCAATCTTGTTCAATAGCTGACTCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTACTGATGTCGTAATCAATAATCGACTGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>CP034483|1|1|1998046-1998313|CRT
GTTCACTGCCGGACAGGCAGCTTAGAAA	ATACGATCGCAACGTCTGTCATAGCGGTGTGC
GTTCACTGCCGGACAGGCAGCTTAGAAA	GCTGAGTGCACGGTGTTGATCGCATTCTCAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGGATAGCAATCTTGTTCAATAGCTGACTCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTACTGATGTCGTAATCAATAATCGACTGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP034483.1\|AZP50700.1\|1992130_1992739_+\|flagellar-transcriptional-regulator-FlhC	unknown	unknown	gnl\|CDD\|237181
CP034483.1\|AZP50707.1\|2001162_2001459_+\|hypothetical-protein	unknown	unknown	unknown
CP034483.1\|AZP50702.1\|1993802_1994906_+\|motility-protein-MotB	unknown	unknown	gnl\|CDD\|236365
CP034483.1\|AZP50695.1\|1985821_1986955_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
CP034483.1\|AZP50713.1\|2007674_2008064_+\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|170568
CP034483.1\|AZP50697.1\|1988271_1989171_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
CP034483.1\|AZP50704.1\|1997061_1997559_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
CP034483.1\|AZP50701.1\|1992915_1993806_+\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
CP034483.1\|AZP50709.1\|2002157_2003852_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
CP034483.1\|AZP50696.1\|1986954_1988268_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
CP034483.1\|AZP50698.1\|1989696_1990521_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
CP034483.1\|AZP50699.1\|1991783_1992128_+\|flagellar-transcriptional-regulator-FlhD	unknown	unknown	gnl\|CDD\|179497
CP034483.1\|AZP50703.1\|1994936_1996979_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|236712
CP034483.1\|AZP50711.1\|2005706_2006579_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|236725
CP034483.1\|AZP50714.1\|2008074_2008719_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|236868
CP034483.1\|AZP50708.1\|2001467_2002061_+\|hypothetical-protein	unknown	unknown	unknown
CP034483.1\|AZP50710.1\|2003973_2005644_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
CP034483.1\|AZP50706.1\|1999488_2000964_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP034483.1\|AZP50705.1\|1998360_1999374_-\|transcriptional-regulator-FtrA	unknown	unknown	gnl\|CDD\|181818
CP034483.1\|AZP50712.1\|2006578_2007628_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828

Protein	Function_ID	Function_description	E-value
CP034483.1\|AZP50700.1\|1992130_1992739_+\|flagellar-transcriptional-regulator-FlhC	gnl\|CDD\|237181	PRK12722, PRK12722, flagellar transcriptional regulator FlhC.	1.43807e-141
CP034483.1\|AZP50710.1\|2003973_2005644_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.03282e-170
CP034483.1\|AZP50702.1\|1993802_1994906_+\|motility-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	1.1216e-163
CP034483.1\|AZP50695.1\|1985821_1986955_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
CP034483.1\|AZP50713.1\|2007674_2008064_+\|chemotaxis-protein-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	5.35691e-83
CP034483.1\|AZP50697.1\|1988271_1989171_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	3.73978e-159
CP034483.1\|AZP50704.1\|1997061_1997559_+\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	9.24838e-106
CP034483.1\|AZP50701.1\|1992915_1993806_+\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	0
CP034483.1\|AZP50709.1\|2002157_2003852_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	0
CP034483.1\|AZP50696.1\|1986954_1988268_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
CP034483.1\|AZP50698.1\|1989696_1990521_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.10457e-73
CP034483.1\|AZP50699.1\|1991783_1992128_+\|flagellar-transcriptional-regulator-FlhD	gnl\|CDD\|179497	PRK02909, PRK02909, flagellar transcriptional regulator FlhD.	6.24818e-56
CP034483.1\|AZP50703.1\|1994936_1996979_+\|chemotaxis-protein-CheA	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
CP034483.1\|AZP50711.1\|2005706_2006579_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	0
CP034483.1\|AZP50714.1\|2008074_2008719_+\|protein-phosphatase-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	7.60403e-139
CP034483.1\|AZP50706.1\|1999488_2000964_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.82012e-52
CP034483.1\|AZP50705.1\|1998360_1999374_-\|transcriptional-regulator-FtrA	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	8.45281e-160
CP034483.1\|AZP50712.1\|2006578_2007628_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0

>CP034483.1|AZP50704.1|1997061_1997559_+|chemotaxis-protein-CheW
MAGLATVAKIAGETVGQEFLIFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPILDLRVKFAQEDVIYNENTVVIVLNFENRVVGIVVDGVSDVLSLSQDQIRPAPEFAVTMSTEYLTGLGSLGDRMLILVDIEKLLSSEEMALVDSVTKI
>CP034483.1|AZP50703.1|1994936_1996979_+|chemotaxis-protein-CheA
MSMDITDFYQTFFDEADELLADMEQHLLLLDPQAPDIEQLNAIFRAAHSIKGGAATFGFTVLQETTHLLENLLDGARRAEMSLSTDIINLFLETKDIMQEQLDAYKSSRDPDAESFEYICAALRQLALEAQQAREPVPDLHVVEDQTAAQSVATAPVAPAAGKGDLRVRLSGLKTQEIPVMLEELGNLGEIKDPVQTDDSVEATLVTTVSEDDIIAVLCFVLEPEQISFTHAPAAVASEAVAVAASAPVVAEVAAAPAVVARQAPVLTAVPNSEPAKARAPKAPESTSIRVAVEKVDQLINLVGELVITQSMLAQRSDLLDPVVHSDLLNSMGQLERNARDLQESVMSIRMMPMEFVFSRFPRLVRDLASKLNKQIELTLLGSSTELDKSLIERIIDPLTHLVRNSLDHGVETPDVRIANGKEPTGNLTLSAEHQGGNICIEVIDDGAGLNRERILAKAASQGMNVHDNMSDEEVGMLIFAAGFSTAEKVTDVSGRGVGMDVVKRNIQEMGGHVEIHSQQGKGTTIRILLPLTLAILDGMSVKVGKEVFILPLNAVMESLQPLSEDLHPMAGGERVLQVRGEYLPLVELYNVFDVEDAKTEATQGIVVILQSAGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSALQSLNRDKLATGSTAA
>CP034483.1|AZP50702.1|1993802_1994906_+|motility-protein-MotB
MKHQSHPIVVVRKKKNKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLISISSPKELVQIAEYFRTPLAVAITGGPRSSDATSPIPGGGEDPTVQDGEVHKMEQSQGASKRESDDLQRLQQKLEDMLASDPRLKDLRPHLMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIAPVLDGFPNKISLAGHTDDMPYATGERGYSNWELSTERANASRREMMSGGLSEGKVLRVMGMGSSMQLKNHPAGDAINRRISILVLNKHAEEAIERENSEGEAITISDAGELQRQVQGTQKVPALAPKMSSAPAAPALAPQANPAPATPEKAPSIPGIETQTPVTPSAGAQPATAAPAAAAGTAPATH
>CP034483.1|AZP50701.1|1992915_1993806_+|flagellar-motor-stator-protein-MotA
MLVIIGYIVVLGSVFGGFMLVGGELGALYQPAELLIIAGAGIGAFFVGNNGKAIKSTMRALPQLFRASKYNKALYMDLMALLYRVLAKSRQQGMLSLENDIDNPAESDIFANYPRILADKQLVEYLTDYLRLMVSGNMNAFEIEALMDEEIETYEHESEVPANSLALVGDSLPAFGIVAAVMGIVHTLAAADRPAAELGALIAHAMVGTFLGILLAYGFVSPLASVLRQKSAENAKMMQCIKVTLLSSINGYAPQIAVEFGRKTLYTSERPSFIELEEHVRQVKSPGQKQTEEEKV
>CP034483.1|AZP50700.1|1992130_1992739_+|flagellar-transcriptional-regulator-FlhC
MSGKDASTKPAEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNAYSFLLKSGHCNGVEAVIKAYRLYLEQCPEQPGEAPILALTRAWTLVRFVDSGMLQLSACNCCDGSFITHAHQPRHGFVCSLCQPPSRAVKKRKLSPQVADITSQELDEQVKHAV
>CP034483.1|AZP50699.1|1991783_1992128_+|flagellar-transcriptional-regulator-FlhD
MSELLKHIYDINLSYLLLAQRLINDEKASAMFRLGIDDVMADTLRQLTLPQMVKLAETNQLLCQFRFDDSKTIERLTQESRVDDLQQIHTGILLSSHLLKGLAAKESGAMKKRA
>CP034483.1|AZP50698.1|1989696_1990521_+|SDR-family-oxidoreductase
MKKVSIIGLGWLGMPLAMALASKGYQVVGSKTTPDGVDAARAVGIECFPLVFTPQMECVAEDLDQLLNVDALIITLPARRTVDGSELYFQAVQLLTDSALAHNVKRIIFTSSTSVYGEGEGVVREGSPLEPVTTSGKVLKELENWLHGLPNTSVDVLRLAGLVGGDRHPGRFMAGKTQVKGGQHGVNLVHQDDVIAAIALLLSLPKGGHTYNLCAPAHPAKAEFYPALARQMGLEPPTFAEQASAQKGKIVDGERICKELGFEYQHPDPRTMPF
>CP034483.1|AZP50697.1|1988271_1989171_-|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESRELLARCGIKINLQEQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLSRRAQGEDPRYFTLRRLDFGGCRLSLATPLDTEYTGPQSLQNARIATSYPHLLKQYLDKKGVDFKSCLLNGSVEVAPRAGLSDAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMPQEKQLLIDKMMTRIQGVIQARESKYIMLHAPSERLDEIIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>CP034483.1|AZP50696.1|1986954_1988268_-|histidinol-dehydrogenase
MKPDAFTTPIDWQQCDEQQRRELLTRPAISASDRITESVSEILRRVRSEGDSALREFCARFDKTEVRELRVTAQQIGAAAARLGEDVKQAMAHAVRNIDTFHQAQKLAVVDIETQPGVRCQQLTRPIQSVGLYIPGGSAPLVSTVLMLATPARIAGCQKVVLCSPPPIADEILYAAQLCGVEEVYQLGGAQAIAALAFGTETVPRVAKIFGPGNAYVTEAKRQVSQSLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDLKMAQAVGEAVERQLQTLSRSEIARQALASSRLIVAKDIAQCIEISNAYGPEHLILQTREPEQLVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQQLTPEGLLGLANTIETLAQAEQLTAHKNAVTLRVNALKEQR
>CP034483.1|AZP50695.1|1985821_1986955_-|histidinol-phosphate-transaminase
MSNENTLSVQALARKNVQELTPYQSARRLGGNGDVWLNANEYAIAPQFELTQQTFNRYPECQPALVINRYAAYAGVDPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEGRTVAAKADWSLDIPAIEAALDGVKLVYVCSPNNPTGNIIDPQEIRAVLEMTRGRAIVAVDEAYIEFCPQATVSGWLQEYPHLAILRTLSKAFALAGLRCGFTLANSDLIGLLMKVIAPYPLSTPVADIAAQALSPEGLAIMRQRVTEVTENRAWLREELEKCACVEEVFASDTNYVLVRFYASSAVFKNLWDQGIILRDQNKQPGLSGCLRITIGTREELQRVITALQPLPGATASTLNDNQNSPRKEHM
>CP034483.1|AZP50705.1|1998360_1999374_-|transcriptional-regulator-FtrA
MQKVDLPLMSSSRHPAAPNRRLVLLAYECLCTFEFGIAVEAFGRADELTGEPLYELAVASVEEGTFGAQGGVRLVVDGGLELLEDAGTIVIPGWRSIHEPASERLIAALQKAHHNGTRIVSICAGSFVLAAAGLLDGKRATAHWNSTDVLAQKFPDVQVEHGMIYVDEGSIITSAGGAAGVDLCLHLIRRDYGIEVANRTARRMVTPPLREGNQAQLIQQPVPRHQTKTLAPLLDDLRGHLNTPLVIDQLARQAGMSRRTFLRRFHDATGTTPGEWMLTVRLEKACALLENGTLSIDRVAEQAGFGSPETLRHHFRQRLGMSPTQWRKGFVERDLVG
>CP034483.1|AZP50706.1|1999488_2000964_+|MFS-transporter
MKNTLALMAVCLAALMSGLEISSVPVLSPVLEQELHASFRELQWIMNAYTLACTTVLMATGTLADRYGRKRVFIISITAFGLTSLMCGLAGSAQWLIAGRFLQGLSGGAMLTCLIAILSSQFPQGKARSQAFAAWGITFGFGLGFGPIIGGTLVAWLSWRWVFLIHVVIAVLTLILALKNVVESRDGQAKKLDLGGLITLSVTVLGATFLITQGSSLGWSSVTAGAVLLATAVSAVMFIRIEKRHPHPMFDFSVFRVRAFSGALMGSVGMNFSFWPLMIYLPVYYQGGLGYGSVATGMALLAYTLPTLLMPPLGEKLTTRFGASRLIPLGLFTIGAGFMLMQIAVVHHLSLLPGALLAGIALGLTNTPVTNTTTGSVAANRAGMASGIDISARLITLAINIALMGNLLVAGIAASLKKVMPAAGELSSLAERIAGGSAIEPLQSGQIAQALTDGFAGILLYGAAGVWVLALLSYLLFNGRGRRKTVSCEPS
>CP034483.1|AZP50707.1|2001162_2001459_+|hypothetical-protein
MSFREIKWKVIECLKNGNIEFEARRGIQLKNLLSTGDISPFEVAALIGRASGDHYQVRPYHFDSSIDVHIITVSSAGVPWYIKWYFTEPTSVFISVHH
>CP034483.1|AZP50708.1|2001467_2002061_+|hypothetical-protein
MIIYKVGDEKKAMCGVCEAFRIVSYQLRDVPFDDGSGMVKNIIAGVCKTCDSVAVIPFQSVPAIKKQLQIQRKAVETRVPAHMIDLLNMASAELGATPDFVPLLLKYYIHQLASNPEAALRLVTLLTSELATGLANKRLSLKGREIGNDIEKLKSLSQIDNTTELLKGVVLMIHHDLLVNPDAHRIAVLKSFVATVA
>CP034483.1|AZP50709.1|2002157_2003852_+|HAMP-domain-containing-protein
MFNRMKVVTGIVILLVVFGALQLVSGGLFFKSLKTDKDNFTTSQQIRLQQAEFNASWIYLLQTRNTLNRAGIRFMLDANQMGSGATVKELIDTATKDLQIADQHFASYQKIPADASQNPQFAADAKKQYQVLHDALSELIELIGLGRINDFFEQPTQQYQDNFEKAFVTYIDQNDRLYNEAVKVSENSFTHAIWMLGTVLIVLAIFILLAWTGVQRILIHPLKNIVDTIRKIATGDLTHEIVVKSRNEIGQLADSLKYMQDELIRTVSGVRHGADAIYSGASEISAGNSDLSSRTEQQASALEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVANVVDTMNDIASSSKKITDITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKGLIDDSVSRINTGSVLAESAGETMHDMVNAVTRVTDIMGEITSASDEQSRGIEQVAQAITEMDRVTQQNASLVEESASASAALEEQASLLTQSVAVFTLSQTANNNVRQNPASSARLSLLTPNLSGSKAGKGGAQGTDLTENWETF
>CP034483.1|AZP50710.1|2003973_2005644_+|HAMP-domain-containing-protein
MFKHIRVSTCMFLLLIVFFVMQLVNSGLSLQAAHTDKLNFEQISNTAEQRDALSQSWSYLLQTRNTLNRAATRLALKQPQENITQLMSDAKASLKKAEDAYAAFLALPRRTEKAVALTAVNKASYQQLHDMLQTLTELLSSGDMNGFLNGPAQKYQDQFQKDVGDYTAYVSARFGEAQTQTAASYQNVMINTSVALVLLIALTVLALVVTRRILFTPLTIMRGHFDRIGAGDISSPIVAEGRYEIKVMLESLQQMQTSLADTVRTVRHGADTMFSGLKGIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNAENARQATQLARDASNTAEKGGELTGNVVKTMNDIAGSSKKISAITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKALIDESVSRVSQGSQLVESAGNTMDDIVRAVTRVTDIMGEIASASDEQSRGIEQVSIAVTQMDQVTQQNATLVQQAASSTHALEIESENLTRAVSVFRLATTDGAGQRRSGLAQGLTSRQVAQPALLPATAGAVSADNWETF
>CP034483.1|AZP50711.1|2005706_2006579_+|protein-glutamate-O-methyltransferase-CheR
MNQPGSPMSADNTSIMAQMIQRLPLSDTHFRRISELIYQRAGIVLADHKREMVYNRLVRRLRILGLNDFTSYMALLENDSNSPEWQAFINALTTNLTAFFREAHHFPILAEHARSRPNSYSVWSTAASTGEEPYSIAMTLSEALGPRMASCRIQASDIDTQVLEKATAGVYRLEELRTLSPQQLQKFFLKGTGPHSGLVRVRPELAQMVAFQQLNLLANQWQLNGPFDAIFCRNVMIYFDKETQEKILRRFVPLLKPGGLMFAGHSENFSQISREFYLRGQTVYGLAKER
>CP034483.1|AZP50712.1|2006578_2007628_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MNKIRVLSVDDSALMRQLMTEIINSHPDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEITLRALELGAIDFVTKPQLGIREGMLAYSEMIADKIRTASKARLNKSVNIDQPRILSHTPLLSSEKLIAIGSSTGGTEAIRHVLQPLPPTCPALMITQHMPPGFTRSFADRLNKLCQITVKEAEDGERVLPGHAYIAPGDRHMELTRSGANYQVKLNDGPAVNRHRPSVDVLFRSVAQFAGRNAVGVILTGMGNDGAAGMLEMHRAGAYTLAQNEASCVVFGMPREAIATGGVNEVVDLSQISQRMLAQISAGQALRI
>CP034483.1|AZP50713.1|2007674_2008064_+|chemotaxis-protein-CheY
MADPNLRFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDLLKTIRADAALGKLPVLMVTAEAKKENIVAAAQAGASGYVVKPFTAATLEEKLGKIFEKLGM
>CP034483.1|AZP50714.1|2008074_2008719_+|protein-phosphatase-CheZ
MAEIPMPANDAATAGEIIARIGQLTRMLRDSMRELGLDQAIAQAAEAIPDARDRLDYVVTMTAQAAERALNCVEAAQPRQNKLESAAKKLDKRWDEWFENPIELSDARELVTDTRSYLKEIPEHTSFTNAQLMEIMMAQDFQDLTGQVIKRMMTVVQEIENQLLMVLMENIPEQQAKAKRENDSLLNGPQLDSNGVGVVASQEQVDDLLDSLGF

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Crispr_ID: CP034483_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034483_2

2922616-2922701

Orphan

Consensus_repeat	Method
CCCTTCGCAGGGGGAGGAGCTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034483_2

>merge|CP034483|2|2922616-2922701|CRISPRCasFinder
CCCTTCGCAGGGGGAGGAGCTAAAACCAAACTCTGGTCAGATTTAACTGGCGTGCTTCCTTCCCTTCGCAGGGGGAGGAGCTAAAA

>CP034483|2|2|2922616-2922701|CRISPRCasFinder
CCCTTCGCAGGGGGAGGAGCTAAAA	CCAAACTCTGGTCAGATTTAACTGGCGTGCTTCCTT
CCCTTCGCAGGGGGAGGAGCTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP034483.1\|AZP51486.1\|2920437_2921562_+\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
CP034483.1\|AZP51484.1\|2918959_2919706_+\|4-oxalmesaconate-hydratase	unknown	unknown	gnl\|CDD\|225031
CP034483.1\|AZP51494.1\|2928920_2929793_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP034483.1\|AZP51491.1\|2925604_2926621_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP034483.1\|AZP51481.1\|2914858_2916112_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
CP034483.1\|AZP51479.1\|2913496_2914330_+\|2-pyrone-4,6-dicarboxylate-hydrolase	unknown	unknown	gnl\|CDD\|238636
CP034483.1\|AZP51489.1\|2923658_2924687_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
CP034483.1\|AZP51485.1\|2919702_2920428_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|181735
CP034483.1\|AZP51488.1\|2922702_2923659_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
CP034483.1\|AZP51497.1\|2933327_2934068_+\|acetoacetyl-CoA-reductase	unknown	unknown	gnl\|CDD\|187594
CP034483.1\|AZP51480.1\|2914346_2914787_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
CP034483.1\|AZP51496.1\|2932116_2933304_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
CP034483.1\|AZP51493.1\|2928310_2928892_-\|D-alanyl-D-alanine-dipeptidase	unknown	unknown	gnl\|CDD\|236662
CP034483.1\|AZP51487.1\|2921554_2922439_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
CP034483.1\|AZP51495.1\|2930424_2931684_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
CP034483.1\|AZP51483.1\|2917578_2918808_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
CP034483.1\|AZP51490.1\|2924688_2925600_-\|D,D-dipeptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182131
CP034483.1\|AZP51482.1\|2916104_2917217_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182148
CP034483.1\|AZP51492.1\|2926682_2928263_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
CP034483.1\|AZP51478.1\|2912237_2913500_+\|gallate-dioxygenase	unknown	unknown	gnl\|CDD\|184006

Protein	Function_ID	Function_description	E-value
CP034483.1\|AZP51486.1\|2920437_2921562_+\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
CP034483.1\|AZP51484.1\|2918959_2919706_+\|4-oxalmesaconate-hydratase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	1.99766e-54
CP034483.1\|AZP51494.1\|2928920_2929793_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.7105e-18
CP034483.1\|AZP51491.1\|2925604_2926621_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.03515e-131
CP034483.1\|AZP51481.1\|2914858_2916112_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	1.4489e-07
CP034483.1\|AZP51479.1\|2913496_2914330_+\|2-pyrone-4,6-dicarboxylate-hydrolase	gnl\|CDD\|238636	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.	2.4736e-50
CP034483.1\|AZP51489.1\|2923658_2924687_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.46631e-155
CP034483.1\|AZP51485.1\|2919702_2920428_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	gnl\|CDD\|181735	PRK09262, PRK09262, hypothetical protein; Provisional.	2.85054e-149
CP034483.1\|AZP51488.1\|2922702_2923659_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	3.75248e-114
CP034483.1\|AZP51497.1\|2933327_2934068_+\|acetoacetyl-CoA-reductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.18589e-102
CP034483.1\|AZP51480.1\|2914346_2914787_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	2.14168e-86
CP034483.1\|AZP51496.1\|2932116_2933304_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP034483.1\|AZP51493.1\|2928310_2928892_-\|D-alanyl-D-alanine-dipeptidase	gnl\|CDD\|236662	PRK10178, PRK10178, D-alanyl-D-alanine dipeptidase; Provisional.	2.37942e-103
CP034483.1\|AZP51487.1\|2921554_2922439_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.55617e-26
CP034483.1\|AZP51495.1\|2930424_2931684_+\|DUF4102-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	6.49249e-69
CP034483.1\|AZP51483.1\|2917578_2918808_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.12023e-51
CP034483.1\|AZP51490.1\|2924688_2925600_-\|D,D-dipeptide-ABC-transporter-permease	gnl\|CDD\|182131	PRK09881, PRK09881, D,D-dipeptide ABC transporter permease.	8.49957e-178
CP034483.1\|AZP51482.1\|2916104_2917217_-\|glycosyltransferase	gnl\|CDD\|182148	PRK09922, PRK09922, lipopolysaccharide 1,6-galactosyltransferase.	1.23389e-101
CP034483.1\|AZP51492.1\|2926682_2928263_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP034483.1\|AZP51478.1\|2912237_2913500_+\|gallate-dioxygenase	gnl\|CDD\|184006	PRK13367, PRK13367, gallate dioxygenase.	0

>CP034483.1|AZP51487.1|2921554_2922439_+|NAD(P)-dependent-oxidoreductase
MNNVTRITLIGLGEVGTILATDLKKQNPAPDIVAFDKLTDSAVIRQRARDAGVHFAPSLEDAVKGSQIIFSAVTAAEALNVAGAVARHLAPGQFFLDLNSVSPHTKREAMALIEQAGGNYIDVAVMAPYPPARLKTPLLLGGTHVYAINEWLNETGFNSKVHSNTVGEASAIKMCRSVMIKGLEALTAECLSAARQYGVEKEVLASLHASFPSLGWDGPFPHYLISRIAEHGKRRAEEMREVVKTLEDVGVAPNLSRGTVLAQQGLVDALAAKGIRYSDLEPFDWGRTVDLLRK
>CP034483.1|AZP51486.1|2920437_2921562_+|4-oxalomesaconate-tautomerase
MPQTRIPCLLMRGGTSKGAFFLADDLPHEQALRDNVLLAAMGSPDPRQIDGLGGADPLTSKVAIIRPSARPDADVDYLFAQVNVDKAVVDYGQNCGNILAAVGPFAIERQLLSAVEGITPVRIFMENTGQIATAHVPVKEGQVCYQGELRIDGVPGTAAKISVEFADIAGSSCGALLPTGNARDTFDGIDVTCIDNGMPVILLRAADFGRSGYESREQLDADTELKKRLESIRLQAGPKMKLGDVTQRTVPKMTLIAEPRNGGAISSRTFIPHRCHASIGVLGAVSVASACLIPGSITEGLAHTPSGNTPLISVEHPAGEFSVELQLDPTKTGAERLAGCALLRTARLIFEGRVAIPASIWDGHQDDQQGSHHE
>CP034483.1|AZP51485.1|2919702_2920428_+|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase
MSLVGKKGVVVRHIPRANKADVSALAAFGVATVHEAQGRKGLLDAGIRPIQQDCAISGSAVTVLTAPGDNWMFHVAVEQCQPGDILVVAPTSPCSDGFFGDLLATSLKARGVVGLIADLGVRDTKTLRDMGFRVWSRAVHAQGTIKETLGSVNVPVVCAGQLVNPGDAIVADDDGVVVIPRQEVAQVAQASREREALEESKRARMADGELGLDIYNMRPRLAEKGLKYFDSLEELENAARR
>CP034483.1|AZP51484.1|2918959_2919706_+|4-oxalmesaconate-hydratase
MTQPKKENTKSALVVSAHSADFVWRAGGAIARHTQAGYAVHIVCLSFGERGESAKLWRKGNMTEEVVKASRREEAMAAAEILGASVEFFDMGDYPLRADKESLFRLADVYRRVQPHFVLTHSLKDPYNYDHPMATHLAQEARIIAQAEGYKPGETIVGAPPVYCFEPHQPEQCDWKPDVLLDITDVWDKKYQAIQCMAGQEHLWEYYTRVAQQRGVQAKRNVGITSTKNIVYGEGYQSLFPRVTEDLA
>CP034483.1|AZP51483.1|2917578_2918808_-|LysR-family-transcriptional-regulator
MAESEMLSNLMQIRAFCQVVDQGSVSRAADELYRTQSAVTRAIRDLEQSLDVPLFERHANGMLLTDFGKCVLPRARRAIAELRQIPSQLAKLQGKSGQRRGDTEPLYLFNVRRLQIFISLCKTRHMQTVATLLGLSQPAVSAALKVLENGAGVALLERTPHGMMPSLAGQDIVPNLRRALNELRHIPADIAARRGVLEGTVQVGALPLGRTRLLPQAIIGLTQRYSGVKVVTNESAFSALASELRSGEVDFIFGALRSRDYAADMATETLFTESMVILARKGHPLLAENVTQETLREARWVLPRAETPARHLLDNSFAAMGIPPPDPVVESGDLGIVRGLLLGSDMLAAVSARQLEHELESGELVKLPLDLADTHRAIGLTFRAGSLLSPAAEALVMEIRKVCGNPIFI
>CP034483.1|AZP51482.1|2916104_2917217_-|glycosyltransferase
MITKEKEVINKKKIVLVTDLLIGRGGMENVTSQVISALKKSEEFEAGFFVINSGEKTYSKSWLDNAVLFESVCTLRNKKVKNFIHTLRLLFFIRKYKPEHVITLNTIPSLMARRAITFSAHKTVLSTWMHLPPRERYRPHYLLSAEHHFAISDEIKNQLTELGVDKNHVDVVFNPVKKTDTVILRPESLRILYIGRIHFERQKQLKDLFDSLARVNVRWSLDIVGDGEDLAICQSYTQQSGISDQITWHGWQSDPWEYVENNIKEVTCLVMTSNFEGFPLVLLEAISRGIYCVSSDCISGPSEIIENNINGQLYPQNDIIRLSQIINKIGSDRVLPEQAVIKESIGKFYEDAYMNNFKNILNKIAEGKDE
>CP034483.1|AZP51481.1|2914858_2916112_-|O-antigen-ligase-family-protein
MNSKSATAPLKIIVNASVIALCISLSLSMFITGWPQKIFYVVSYVSFFTTLYAIYKKDISFKNEHFYLVMFFSLFFLAAVRFVWAMMLKHNGIDPSPTSAGIINNYLVGSKRILLGAFVILCLSVYGSLTTQKTIFLSKVIIVLGLIVTLGFGLHEHFYTVNDRIKLTTDAASMSSYMIIFIYAAYLGLSRLENHRYSKCLDLGAFILTFILLYLCGTRITILALIFLKLTFIFLEYKIDLRKNWQMAGLVVLAIVTIIGITGHRWAQGINDIQKYDVQSSTSLGARVAIWESGIYLLHHHIGFTTPDERTTLARAFIKTHHPENTEGYTNVQYNMHNEFLEVTTLQGLLGTFSLLLPYLVLIYGWVRKVNIKGMVLPFIALFVTGLTDSVILYDQTATLFVISLAVCCIGTRKSAE
>CP034483.1|AZP51480.1|2914346_2914787_+|type-II-3-dehydroquinate-dehydratase
MNYNIAVFNGPNLNLLGTREPETYGHDTLATIEKLCHQTGENCGAKIEFFQTNHEGDLIDRIQACRGKVDAIVLNAAAWTHTSVAIRDAVTAVSLPLYEVHITNVHKRDAFRHHSFLSDVAVGVICGFGIQGYEYAIRQAVVNLNK
>CP034483.1|AZP51479.1|2913496_2914330_+|2-pyrone-4,6-dicarboxylate-hydrolase
MTIFEQPKIDTHHHVFDPARFPYLPDTPYRPEGHEIGTTEYYRAVMQAYNIRHSLIVGPTSGYNTDSACLLDALQKGNGRFKGIAVVPFDIGIEQLANLKNAGVVGIAMNVAMLGTESFLHLDGLMGRLAELDMFAAIQVQNDQLLALLPLINRTRTRLLIDHSGRPDVTQGLQQPAFQALLSLADQQRAWVKLSGLAKFSRQPFPYQDGHAYQHALLDAFGAEHCMWGSDWPFLRAEHRMDLGTLLMLVGQLFPDEKIRQQILWQTPKDLFGFTDY
>CP034483.1|AZP51478.1|2912237_2913500_+|gallate-dioxygenase
MAKIIGGLAVSHTPTIGFAVDHNKQEESAWAPIFESFAPMQKWLDEKKPDVLVYIFNDHVTSFFFDHYSAFTLGIDEQYEVADEGGGPRDLPAVKGHAALSQHIGASLMADEFDMSFFQDKPLDHGLFSPLSALLPHEGGWPTQIVPLQIGVLQFPIPTARRCYKLGQALRRAIESFPEDLNVAIVATGGVSHQVHGERCGFNNPDWDEQFVDMIVNDPERLTEMTLAEFATLGGMEGAEVIMWLVMRGALSANVKKLHQAYYLPSMTGIATLILENQSREAPYDVQQRQRDKIAQQMAGVEKLPGTYPFTQARSLKALRINRFLHRLIQPAWRARFLTDQHALFAENKLTEEEQQLLRELDWRGMIHYGVSFFLLEKLGAVVGVSNLHIYSAMRGETLEEFQKTRNQQVLYSVAGKAKA
>CP034483.1|AZP51488.1|2922702_2923659_-|ABC-transporter-ATP-binding-protein
MMAEALVELQDVRVRFAASYNWRGKPTSYVHALNGLDLNIIRGETLGIVGESGCGKSTLAQLLMGLQKPSSGEVHRARHDNSWFGSGMQMVFQDPQSSLDPRLPVWRIITEPVFVQKHNSSRERRELAATLAEQVGIRREYLDRLPHEFSGGQRQRISIARALSSEPDIIVLDEPTSALDISVQAQILNLLVELQRQRNLTYVLISHNVSVVRHMSDRVAVMYLGQIVELGTAEKVLSEPQHPYTRLLLDSVPRAGRQLDEGIVDKKGELPSNRNLPMGCYFRERCPLAGDGCQMPQDLVHGAGGVVARCHRVMPERV
>CP034483.1|AZP51489.1|2923658_2924687_-|ABC-transporter-ATP-binding-protein
MTEQSQAPVLEIDNLQLVFPVYGGEVKALNQVSLSVNAGEIVGVVGESGSGKSVTAMMAMRLLPPDGFTVTGGALRMLGTDVIHASEEQMRTLRGARVAMIFQEPMNALNPTRKIGRQMCEVICLHQKLSKAQAWQKAIGLLQDMQIADAEQVMSRYPFELSGGMRQRVLIAMAFSCEPELIIADEPTTALDVTVQRQVLRLLQRKARASGTAVLFITHDMAVVSQLCDRVYVMYAGHVIESGNTTDVIDTPSHPYSIGLLQAAPENGEPRSLLKAIPGTVPNLAKLPQGCAFRGRCNHADDRCIATPALASLPHFPQQSVACWHPQRYAGDIHIQRIEEHS
>CP034483.1|AZP51490.1|2924688_2925600_-|D,D-dipeptide-ABC-transporter-permease
MSVIEPGVNNHRADIVAPDVKPRFANWRRTFYLLSRSPLTMLGLAIMLIVLFIMIFSPWLVPHDPNAISLTDRLQAPSALHWFGTDEVGRDLFSRVLIGSQQSVAAGLAVVIIAGTTGSLLGCFSGVVGGVVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAMLAIAVVRIPFYVRLARGQTLMLRHQAYMQATRTFGASRWHLITWHVLRNVMPPLVVQASLDIGTSILMAATLGFIGLGAQQPTAEWGAMVSNGRNYILDQWWYSAFPGVAILITATGFNLFGDGLRDLLDPKSRGR
>CP034483.1|AZP51491.1|2925604_2926621_-|ABC-transporter-permease
MTFWTLIRQRCWGLILVMAGVCVITFIISHMIPGDPARLLAGDRASNEMVEHIREQLGLNQPLYVQFFRYVSDLLHGDLGTSIRTGRPVLEDLKAFFPATLELAVSALFLAIVLGIPLGVLSAVYRNKFPDHLVRLLSVLGISTPAFWLGLGVIILFYGHLNLLPGGGRLDDWMDPPANITGFYVLDSLLTGNRDAFWNSLQHLAMPALTLAFVHMGIVARQIRSAMLEQLSEDYIRTARANGLSRWRVILSHALPNALIPSVTVLGLAMGDLLYGAVLTETVFAWPGMGAYVVNSIQALDFPAVMGFAVVVSFAYVIVNLCVDLLYVWIDPRIGREG
>CP034483.1|AZP51492.1|2926682_2928263_-|ABC-transporter-substrate-binding-protein
MSNTAINTFRKNTKTQVAGAIFLALSGLSFATQAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPAYQRLVQYKTEDGKGSTQVEGDLAASWTASPDQLIWTFKLKPGAKFDDGSDVNADAVKWSFERLMKIGQGPSEAFPKDMTVTVVDPMTVTFTLKTPFAPFLYTLANDGAGIVNPAIAKANPADEGKAWLAGHTAGSGPYKLDRWQKGQQLVLVPNPHYSGAKPAFKRVTVKIIGESATRRLQLSRGDLDIADSLPMDQLAALKKENKVAVEEFPSLRVTYLYLNNGKTPLNQVDLRRAISSAVDYQGMVKGILGGNAKQMRGPIPDGMWGFDPTAKQYTLDLTQAKADLEKVKDKPQTLDFLYSDNDPNWESIALSVQASLGQAGINVKLEKLANATMRDRIGQGDYDISIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYSNPDVDALLKKAVSVTDQKQRTDYYQQAQKIVIDEAAYVYLFQKNYQVAMNKDVKGFVFNPMLEQVFNVGQMHKQ
>CP034483.1|AZP51493.1|2928310_2928892_-|D-alanyl-D-alanine-dipeptidase
MNTKTPDVALIDLAEILPDAVIDLKYATADNLTGQPIYRESLCLLHPDAASALVRCNEVAKLAGFTLKIYDAYRPQAAQACLWAAFPNPDYVVDIRLGSHHSRGVAVDLTLLDEQGEAVDMGAGFDEMTEVSHPFYPDLPPHIQRNRLLLNAVMAAGGFKGITSEWWHFELPDAKTYPLLEERFGCYPPVNAA
>CP034483.1|AZP51494.1|2928920_2929793_-|MurR/RpiR-family-transcriptional-regulator
MQPAQDVIEQIEASFAGQTPTGKRIASYLLANLAQIPFETADSIARSAATSGISVGRYLRSLGYRNLDHFKQTLRLQSGTSYQPWVVTDRLGAYRERSKQPQQEKLQQSLTLELEAINHVYRLAQTDSFAQVSRRLADAEAVFILGIQSVRGIANNFSSYLEYLRPKVYFADGLSGTYVESLNSEFAQPYLVVTDTRAYSKMAQTYCEAACERGLNVALITDIYCPWARDYPVDLLQVKTDTGQFWDSMAPLSCLFNLLCSAVLELRGHDVEQRLANNRILQKQLGQFES
>CP034483.1|AZP51495.1|2930424_2931684_+|DUF4102-domain-containing-protein
MSLNDTKIRSLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINGKESRLGLGAYPDVSLAYARQQRDGIRKLLTQNINPSQQRIAEKAARSPEKTFKHVALSWHKSNRTWSENHASRLLASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEVAARTRQHMCSIMRHAVHQELIENNPAANLEGIIAPPVKRHYPALPLERLSELLARIEDYQQGRELTRLAVSLTLHLFIRSSELRFARWSEIDFRNKIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSRQSITILEQIQEISGHQELVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQGAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDACSDAFLPPYVWSRVQKR
>CP034483.1|AZP51496.1|2932116_2933304_+|acetyl-CoA-C-acetyltransferase
MANDVVIVSAARTAIGSFGGSLSNFPAIDLGAEVIKGLVDRVKISKEIIQEVVMGNVLTAGLGQNPARQAALKAGLPIETCAYTINEVCGSGLKAIALAYDDIKCGNADIVIAGGQENMDMAARILSGSRTGKRIGDLKLIDTLINDGLSDAYSKCHMGVTAENIANHFHITRDEQDEFSYGSQQKCRKAVDEGKFIDEIVPLFLENNATDTVFDKDEFPRPNTTLEKLHSLKPAFDKNGTVTAGNSTGINNGASAVILMSEKKASELMLNPMVRIIAWAEVGVEPSLMGTGPIEASLKVLKKANLKIEDLDLIEVNEAFAAQVICINRKLGWDVEKVNVNGGSIALGHPIGASGARILTTLIFEMIRRKSHYGLATLCIGGGMGIAMIVENINS
>CP034483.1|AZP51497.1|2933327_2934068_+|acetoacetyl-CoA-reductase
MKGKIALVTGGTRGIGSSIAKMLHNEGLKVIVISKNKSLGEKWINDSHAEGYDDLIYFPCDINDYASCNSLISQIINEYGSIDVLINNAGITKDRTFKKMSIEDWSIVLTTNLVSLFNITQPIVSKMIESKYGRIVNISSVNAEKGQFGQTNYCAAKAGVVGFTKALALELASSGITVNVVSPGYTETDMVLGKIPTTTLGNILKEIPIKRLLKPTEIAEVVRLLIQEDSTYITGANFNINGGYYM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034483_1	1.4\|1998254\|32\|CP034483\|PILER-CR,CRISPRCasFinder,CRT	1998254-1998285	32	HQ634191	Cyanophage Syn10 genomic sequence	5793-5824	6	0.812
CP034483_1	1.4\|1998254\|32\|CP034483\|PILER-CR,CRISPRCasFinder,CRT	1998254-1998285	32	DQ149023	Synechococcus cyanophage syn9, complete genome	144228-144259	6	0.812
CP034483_1	1.4\|1998254\|32\|CP034483\|PILER-CR,CRISPRCasFinder,CRT	1998254-1998285	32	NC_008296	Synechococcus phage syn9, complete genome	144228-144259	6	0.812
CP034483_1	1.4\|1998254\|32\|CP034483\|PILER-CR,CRISPRCasFinder,CRT	1998254-1998285	32	KY653124	Staphylococcus phage IME1367_01, complete genome	38501-38532	7	0.781
CP034483_1	1.4\|1998254\|32\|CP034483\|PILER-CR,CRISPRCasFinder,CRT	1998254-1998285	32	AB182649	Bacteriophage phi WMY holWMY, lysWMY gene for holin, lysin, complete cds	38-69	7	0.781
CP034483_1	1.2\|1998134\|32\|CP034483\|PILER-CR,CRISPRCasFinder,CRT	1998134-1998165	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	300310-300341	8	0.75

1. spacer 1.4|1998254|32|CP034483|PILER-CR,CRISPRCasFinder,CRT matches to HQ634191 (Cyanophage Syn10 genomic sequence) position: , mismatch: 6, identity: 0.812

gttactgatgtcgtaatcaataatcgactgaa---	CRISPR spacer
gtcactgatgttgtaatcaataa---actgaggac	Protospacer
**.********.***********   *****.

2. spacer 1.4|1998254|32|CP034483|PILER-CR,CRISPRCasFinder,CRT matches to DQ149023 (Synechococcus cyanophage syn9, complete genome) position: , mismatch: 6, identity: 0.812

gttactgatgtcgtaatcaataatcgactgaa---	CRISPR spacer
gtcactgatgttgtaatcaataa---actgaggac	Protospacer
**.********.***********   *****.

3. spacer 1.4|1998254|32|CP034483|PILER-CR,CRISPRCasFinder,CRT matches to NC_008296 (Synechococcus phage syn9, complete genome) position: , mismatch: 6, identity: 0.812

gttactgatgtcgtaatcaataatcgactgaa---	CRISPR spacer
gtcactgatgttgtaatcaataa---actgaggac	Protospacer
**.********.***********   *****.

4. spacer 1.4|1998254|32|CP034483|PILER-CR,CRISPRCasFinder,CRT matches to KY653124 (Staphylococcus phage IME1367_01, complete genome) position: , mismatch: 7, identity: 0.781

gttactgatgtcgtaatcaataatcgactgaa--	CRISPR spacer
gttactgatgtgttaatcaataat--acaggttc	Protospacer
***********  ***********  ** *.

5. spacer 1.4|1998254|32|CP034483|PILER-CR,CRISPRCasFinder,CRT matches to AB182649 (Bacteriophage phi WMY holWMY, lysWMY gene for holin, lysin, complete cds) position: , mismatch: 7, identity: 0.781

gttactgatgtcgtaatcaataatcgactgaa--	CRISPR spacer
gttactgatgtgttaatcaataat--acaggttc	Protospacer
***********  ***********  ** *.

6. spacer 1.2|1998134|32|CP034483|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gctgagtgcacggtgttgatcgcattctcaat---	CRISPR spacer
gctgcgttcacggtgttgatcgcg---ccgatccc	Protospacer
**** ** ***************.   .*.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

673992 : 732918

Salmonella_phage(42.11%)

tail,head,plate,capsid,integrase,terminase,tRNA,portal

attL 670227:670242|attR 718103:718118

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
670227:670242	attL	NA	NA	NA	NA
AZP53246.1\|673992_675069_-	phage late control D family protein	A0A0M4REC6	Salmonella_phage	5.4e-127	63.2
AZP49574.1\|675288_676500_+\|tail	phage tail protein	A0A0M4S6M1	Salmonella_phage	1.3e-137	62.5
AZP49575.1\|676514_677030_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	2.7e-52	61.4
AZP49576.1\|677077_677365_+\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	6.7e-16	54.1
AZP53247.1\|677385_677532_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AZP49577.1\|677512_680092_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	2.4e-72	27.6
AZP49578.1\|680095_680533_+\|tail	phage tail protein	A0A1J0I2L5	Salmonella_phage	2.9e-47	67.7
AZP49579.1\|680625_680775_-	hypothetical protein	NA	NA	NA	NA
AZP49580.1\|680983_681736_+	glycosyltransferase family 25 protein	A0A1V0SBR2	Catovirus	5.1e-07	34.5
AZP49581.1\|681739_682258_-\|tail	tail fiber assembly protein	Q6K1H1	Salmonella_virus	5.4e-24	42.2
AZP49582.1\|682273_683842_-	hypothetical protein	Q858V4	Yersinia_virus	8.4e-52	51.6
AZP49583.1\|683843_684467_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	8.7e-45	49.1
AZP49584.1\|684360_685290_-\|plate	baseplate assembly protein	A0A0M4REB7	Salmonella_phage	7.8e-90	59.6
AZP49585.1\|685286_685643_-\|plate	baseplate assembly protein	Q7Y4D7	Escherichia_virus	1.1e-23	50.0
AZP49586.1\|685642_686251_-\|plate	phage baseplate assembly protein V	A0A0M3ULA5	Salmonella_phage	1.1e-57	56.2
AZP49587.1\|686351_686999_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.3e-46	47.5
AZP49588.1\|686995_687475_-\|tail	phage tail protein	A0A0M4R2U5	Salmonella_phage	5.5e-39	48.7
AZP53248.1\|687484_687727_-	hypothetical protein	NA	NA	NA	NA
AZP49589.1\|687799_688588_-	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.0e-58	47.2
AZP49590.1\|688651_688855_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	5.9e-19	61.2
AZP49591.1\|688854_689346_-\|head	head completion/stabilization protein	A0A0M4QWR7	Salmonella_phage	1.1e-37	51.6
AZP49592.1\|689445_690147_-\|terminase	terminase	A0A0M4R523	Salmonella_phage	1.9e-48	50.2
AZP49593.1\|690156_691209_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.7e-122	63.1
AZP49594.1\|691252_692092_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	2.5e-55	44.3
AZP49595.1\|692237_693956_+	oxidoreductase	A0A0M4S6K7	Salmonella_phage	1.6e-205	62.5
AZP49596.1\|693956_695042_+\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	1.2e-126	62.2
AZP49597.1\|695532_696135_+	norphogenetic protein	Q1MVG8	Enterobacteria_phage	3.4e-54	54.3
AZP49598.1\|696131_696704_+	hypothetical protein	NA	NA	NA	NA
AZP49599.1\|696712_697366_+	hypothetical protein	NA	NA	NA	NA
AZP49600.1\|697859_701924_-	hypothetical protein	NA	NA	NA	NA
AZP49601.1\|702297_704685_-	replication endonuclease	F1BUS0	Erwinia_phage	1.5e-209	57.1
AZP53249.1\|704674_705622_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.8e-84	53.5
AZP49602.1\|705611_706118_-	hypothetical protein	NA	NA	NA	NA
AZP49603.1\|706211_706481_-	hypothetical protein	NA	NA	NA	NA
AZP49604.1\|706615_706906_-	hypothetical protein	NA	NA	NA	NA
AZP49605.1\|707019_707211_-	hypothetical protein	NA	NA	NA	NA
AZP49606.1\|707216_707477_-	hypothetical protein	NA	NA	NA	NA
AZP53250.1\|707570_707879_+	XRE family transcriptional regulator	Q1JS21	Enterobacteria_phage	2.8e-20	48.9
AZP49607.1\|708032_709010_+\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	5.0e-87	47.8
AZP49608.1\|709253_710678_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AZP49609.1\|710688_711597_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
AZP49610.1\|711610_713038_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	6.1e-33	27.6
AZP49611.1\|713039_713663_+	adenylyl-sulfate kinase	A0A1B0XTK9	Freshwater_phage	1.1e-07	39.1
AZP49612.1\|713722_714103_+	DUF3561 family protein	NA	NA	NA	NA
AZP49613.1\|714270_714591_+	cell division protein FtsB	NA	NA	NA	NA
AZP49614.1\|714593_715313_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZP49615.1\|715312_715786_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZP53252.1\|715805_716855_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AZP53251.1\|716832_717600_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.3e-69	53.7
AZP49616.1\|717589_718216_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.8e-37	51.2
718103:718118	attR	NA	NA	NA	NA
AZP53253.1\|718476_719481_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.2e-05	35.2
AZP49617.1\|719532_720519_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.1e-33	33.1
AZP49618.1\|720617_723173_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.4e-25	24.7
AZP49619.1\|723595_726256_+	hypothetical protein	NA	NA	NA	NA
AZP49620.1\|726410_727514_+	murein transglycosylase B	NA	NA	NA	NA
AZP49621.1\|727675_728170_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.7e-27	48.7
AZP49622.1\|728277_729342_+	DNA recombination/repair protein RecA	A0A2D1GPX2	Mycobacterium_phage	3.2e-111	61.6
AZP49623.1\|729462_730152_+	recombination regulator RecX	NA	NA	NA	NA
AZP49624.1\|730071_730353_-	hypothetical protein	NA	NA	NA	NA
AZP49625.1\|730290_732918_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.5e-80	38.8

DBSCAN-SWA_2

742734 : 783913

Erwinia_phage(36.0%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP49635.1\|742734_743508_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AZP49636.1\|743556_743904_+	50S ribosomal protein L19	NA	NA	NA	NA
AZP49637.1\|743995_744175_-	late control protein B	F1BUT0	Erwinia_phage	6.4e-17	75.5
AZP49638.1\|744239_745340_-\|tail	phage tail protein	Q6K1G4	Salmonella_virus	4.4e-84	43.9
AZP49639.1\|745342_745813_-\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	1.7e-37	50.0
AZP49640.1\|745809_747441_-\|tail	phage tail tape measure protein	F1BUT7	Erwinia_phage	1.2e-16	28.6
AZP49641.1\|747433_747568_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	6.7e-11	78.9
AZP49642.1\|747588_747876_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	4.3e-23	60.9
AZP49643.1\|747935_748445_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	3.1e-64	68.4
AZP49644.1\|748459_749629_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	8.4e-182	80.5
AZP49645.1\|749770_750319_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	2.7e-34	42.1
AZP49646.1\|750315_751692_-	hypothetical protein	A0A0F7LDR4	Escherichia_phage	5.4e-63	60.9
AZP49647.1\|751703_752231_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	5.6e-69	69.2
AZP49648.1\|752223_753132_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	8.4e-121	75.8
AZP49649.1\|753137_753488_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	9.9e-38	63.8
AZP49650.1\|753484_754126_-\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	6.4e-67	60.4
AZP49651.1\|754207_754669_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.1e-23	43.3
AZP49652.1\|754761_755190_-	transcriptional regulator	F1BUQ1	Erwinia_phage	1.4e-06	48.3
AZP49653.1\|755190_755700_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-55	61.1
AZP49654.1\|755680_755902_-	hypothetical protein	NA	NA	NA	NA
AZP49655.1\|755892_756096_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	8.6e-18	56.7
AZP49656.1\|756307_756502_-	hypothetical protein	NA	NA	NA	NA
AZP49657.1\|756650_758543_-	replication endonuclease	Q7Y4B8	Escherichia_virus	7.0e-178	50.3
AZP49658.1\|758636_758858_-	conjugal transfer protein TraR	A0A1S6L007	Salmonella_phage	4.6e-09	44.3
AZP49659.1\|758857_759133_-	hypothetical protein	NA	NA	NA	NA
AZP49660.1\|759265_759856_+	CI repressor	Q6K1G0	Salmonella_virus	1.8e-52	51.3
AZP49661.1\|760144_761221_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	3.9e-85	48.3
AZP49662.1\|761227_762349_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AZP49663.1\|762426_763581_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AZP49664.1\|763892_764237_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AZP49665.1\|764518_765253_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AZP49666.1\|765383_766361_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AZP49667.1\|766360_767098_+	polyphenol oxidase	NA	NA	NA	NA
AZP49668.1\|767228_769802_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.2e-126	35.1
AZP49669.1\|775631_776930_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.9e-42	30.3
AZP49670.1\|777119_778478_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AZP49671.1\|778559_781280_-	bifunctional acyl-CoA synthetase/GNAT family N-acetyltransferase	NA	NA	NA	NA
AZP49672.1\|781311_782016_-	DTW domain-containing protein	NA	NA	NA	NA
AZP49673.1\|782145_782565_-	thioredoxin TrxC	A0A191VYI2	Roseobacter_phage	4.5e-13	34.4
AZP49674.1\|782809_783913_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1961917 : 1972179

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP50676.1\|1961917_1962559_+	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-34	37.9
AZP50677.1\|1962596_1963178_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.5e-30	41.6
AZP50678.1\|1963221_1965072_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
AZP50679.1\|1965150_1966740_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	8.2e-39	43.6
AZP50680.1\|1967202_1968090_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.2e-60	46.9
AZP50681.1\|1968205_1969078_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.0e-107	65.6
AZP50682.1\|1969097_1970162_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.7e-101	53.7
AZP50683.1\|1970773_1971310_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.5e-56	57.0
AZP50684.1\|1971306_1972179_+	dTDP-4-dehydrorhamnose reductase	K7QJU0	Escherichia_phage	6.3e-41	37.5

DBSCAN-SWA_4

2769497 : 2798259

Cronobacter_phage(76.0%)

tail,holin,head,capsid,integrase,terminase,transposase,portal

attL 2770072:2770086|attR 2805383:2805397

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP51349.1\|2769497_2769938_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.1e-20	44.1
2770072:2770086	attL	NA	NA	NA	NA
AZP51350.1\|2772647_2773235_-	hypothetical protein	F1BUK5	Cronobacter_phage	3.5e-80	73.3
AZP51351.1\|2773227_2774412_-	hypothetical protein	F1BUK6	Cronobacter_phage	1.2e-162	73.6
AZP51352.1\|2774404_2774737_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	9.1e-33	71.7
AZP51353.1\|2774736_2777046_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.4e-164	45.0
AZP51354.1\|2777233_2777491_-	hypothetical protein	A5X9I7	Aeromonas_virus	1.7e-18	55.8
AZP51355.1\|2777487_2777667_-	hypothetical protein	F1BUL1	Cronobacter_phage	3.6e-12	60.0
AZP51356.1\|2777611_2777986_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.3e-22	54.4
AZP51357.1\|2777982_2778324_-	M15 family peptidase	F1BUL3	Cronobacter_phage	1.2e-43	79.2
AZP51358.1\|2778320_2778617_-\|holin	holin	C7BGD7	Burkholderia_phage	7.9e-20	55.3
AZP51359.1\|2778630_2779083_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.6e-51	65.1
AZP51360.1\|2779085_2780213_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	3.0e-144	70.1
AZP51361.1\|2780908_2781415_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.3e-40	48.8
AZP51362.1\|2781411_2781864_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.0e-46	61.3
AZP51363.1\|2781957_2782149_-	hypothetical protein	NA	NA	NA	NA
AZP51364.1\|2782145_2782859_-\|terminase	terminase	F1BUM0	Cronobacter_phage	1.8e-73	60.3
AZP51365.1\|2782861_2783896_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-137	75.4
AZP53329.1\|2783962_2784802_-\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	1.3e-43	52.2
AZP51366.1\|2784942_2786730_+\|terminase	terminase	F1BUM5	Cronobacter_phage	6.2e-253	71.5
AZP51367.1\|2786726_2787758_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.1e-136	66.2
AZP51368.1\|2787754_2788069_+	transcriptional regulator	F1BUM8	Cronobacter_phage	4.3e-24	54.9
AZP51369.1\|2788051_2788258_-	hypothetical protein	NA	NA	NA	NA
AZP51370.1\|2788360_2790517_-	replication endonuclease	F1BUM9	Cronobacter_phage	2.6e-245	64.4
AZP51371.1\|2790517_2790778_-	DUF2732 family protein	NA	NA	NA	NA
AZP51372.1\|2790851_2791283_-	hypothetical protein	NA	NA	NA	NA
AZP51373.1\|2791290_2791617_-	hypothetical protein	NA	NA	NA	NA
AZP51374.1\|2791619_2791823_-	DUF2724 domain-containing protein	NA	NA	NA	NA
AZP51375.1\|2791832_2792342_-	hypothetical protein	F1BUN6	Cronobacter_phage	3.9e-43	54.1
AZP51376.1\|2792374_2792596_-	regulator	NA	NA	NA	NA
AZP51377.1\|2792723_2793287_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	2.0e-32	37.0
AZP51378.1\|2793321_2794242_+	hypothetical protein	NA	NA	NA	NA
AZP51379.1\|2794281_2795331_+	hypothetical protein	NA	NA	NA	NA
AZP51380.1\|2795422_2796478_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	2.7e-107	56.4
AZP51381.1\|2797139_2798259_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.3e-50	42.0
2805383:2805397	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4004469 : 4087747

Erwinia_phage(42.86%)

tail,holin,protease,head,plate,capsid,lysis,integrase,terminase,tRNA,portal,coat

attL 4050839:4050863|attR 4085424:4085448

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP52425.1\|4004469_4004988_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AZP52426.1\|4004996_4005542_+	SCPU domain-containing protein	NA	NA	NA	NA
AZP52427.1\|4005561_4006359_+	molecular chaperone	NA	NA	NA	NA
AZP52428.1\|4006377_4008825_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AZP52429.1\|4008821_4009790_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AZP52430.1\|4009845_4010325_-	cold shock domain-containing protein	NA	NA	NA	NA
AZP52431.1\|4010434_4011088_-	DNA oxidative demethylase AlkB	A0A0H3Y8P5	Apricot_vein_clearing_associated_virus	7.1e-05	33.7
AZP52432.1\|4011225_4012044_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
AZP52433.1\|4012105_4013443_-	glucarate dehydratase	NA	NA	NA	NA
AZP53385.1\|4013471_4014812_-	glucarate dehydratase	NA	NA	NA	NA
AZP52434.1\|4014811_4016185_-	MFS transporter	NA	NA	NA	NA
AZP52435.1\|4016411_4017572_-	CdaR family transcriptional regulator	NA	NA	NA	NA
AZP52436.1\|4017809_4019261_-\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	3.9e-27	30.7
AZP52437.1\|4019468_4020983_-	dGTPase	NA	NA	NA	NA
AZP52438.1\|4021166_4021871_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
AZP52439.1\|4021870_4022683_+	vitamin B12 ABC transporter substrate-binding protein BtuF	NA	NA	NA	NA
AZP52440.1\|4023008_4023254_+	hypothetical protein	NA	NA	NA	NA
AZP53386.1\|4023361_4023706_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.7e-27	50.5
AZP52441.1\|4023809_4025273_-	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA
AZP52442.1\|4025459_4026740_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
AZP52443.1\|4026843_4028832_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
AZP52444.1\|4028828_4029731_-	Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA	NA	NA	NA
AZP52445.1\|4029732_4030545_-	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	W6JKT0	Anomala_cuprea_entomopoxvirus	1.3e-11	27.6
AZP52446.1\|4030640_4032863_-	ferrichrome porin FhuA	NA	NA	NA	NA
AZP52447.1\|4033159_4035793_-	bifunctional glycosyl transferase/transpeptidase	NA	NA	NA	NA
AZP53387.1\|4035983_4038428_-	ATP-dependent helicase HrpB	A0A2H4UU36	Bodo_saltans_virus	1.9e-42	31.1
AZP52448.1\|4038524_4039067_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
AZP52449.1\|4039115_4039850_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA
AZP52450.1\|4040080_4040536_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
AZP52451.1\|4040598_4041474_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
AZP52452.1\|4041606_4043313_+	polynucleotide adenylyltransferase PcnB	G3MAR3	Bacillus_virus	1.0e-26	37.4
AZP52453.1\|4043309_4043789_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AZP52454.1\|4043794_4045180_-	two-component system sensor histidine kinase QseC	NA	NA	NA	NA
AZP52455.1\|4045176_4045863_-	response regulator	NA	NA	NA	NA
AZP52456.1\|4046021_4046816_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
AZP52457.1\|4046830_4047685_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
AZP52458.1\|4047793_4048174_+	aspartate 1-decarboxylase	NA	NA	NA	NA
AZP52459.1\|4048317_4049088_-	ABC transporter permease	NA	NA	NA	NA
AZP52460.1\|4049087_4050011_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-21	31.3
AZP52461.1\|4050146_4050803_+	carbonate dehydratase	NA	NA	NA	NA
4050839:4050863	attL	NA	NA	NA	NA
AZP52462.1\|4050951_4051959_-\|integrase	integrase	Q83VS6	Escherichia_phage	4.9e-114	58.2
AZP52463.1\|4052034_4052334_-	XRE family transcriptional regulator	Q1JS61	Enterobacteria_phage	4.3e-34	70.7
AZP52464.1\|4052442_4052715_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-32	69.2
AZP52465.1\|4052751_4053087_+	hypothetical protein	NA	NA	NA	NA
AZP52466.1\|4053070_4053259_-	hypothetical protein	NA	NA	NA	NA
AZP52467.1\|4053399_4053564_+	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	3.9e-05	62.2
AZP53388.1\|4053604_4053898_+	hypothetical protein	NA	NA	NA	NA
AZP52468.1\|4053964_4054147_+	DUF2732 family protein	Q6K1F6	Salmonella_virus	2.5e-08	51.7
AZP52469.1\|4054146_4054371_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.3e-11	50.7
AZP52470.1\|4054450_4056703_+	replication endonuclease	S4TTC1	Salmonella_phage	1.0e-231	55.0
AZP52471.1\|4056707_4057607_-	hypothetical protein	NA	NA	NA	NA
AZP52472.1\|4058659_4060432_+	EAL domain-containing protein	NA	NA	NA	NA
AZP52473.1\|4060896_4061349_+	N-acetyltransferase	NA	NA	NA	NA
AZP52474.1\|4061561_4063124_-	diguanylate cyclase	NA	NA	NA	NA
AZP52475.1\|4063333_4064365_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	9.4e-161	80.1
AZP52476.1\|4064366_4066133_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	1.1e-270	77.7
AZP52477.1\|4066277_4067129_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	1.1e-87	61.8
AZP52478.1\|4067175_4068240_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	2.2e-144	74.0
AZP52479.1\|4068251_4068908_+	hypothetical protein	F1BUQ7	Erwinia_phage	3.6e-57	55.0
AZP52480.1\|4069003_4069474_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	9.5e-36	50.7
AZP52481.1\|4069473_4069677_+\|tail	phage tail protein	F1BUQ5	Erwinia_phage	3.3e-17	61.2
AZP52482.1\|4069682_4069892_+	hypothetical protein	F1BUQ4	Erwinia_phage	1.5e-09	51.7
AZP52483.1\|4069872_4070382_+	lysozyme	A0A218M4K3	Erwinia_phage	1.2e-55	63.9
AZP52484.1\|4070381_4070807_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	2.8e-26	48.2
AZP53389.1\|4070751_4070940_+\|holin	holin	F1BUQ0	Erwinia_phage	5.9e-13	55.7
AZP52485.1\|4070902_4071370_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.9e-53	67.1
AZP52486.1\|4071362_4071812_+	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	7.0e-44	66.7
AZP52487.1\|4071902_4072850_+	DUF4062 domain-containing protein	NA	NA	NA	NA
AZP52488.1\|4072934_4073576_+\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	2.8e-62	58.0
AZP52489.1\|4073572_4073923_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	9.9e-38	66.4
AZP52490.1\|4073926_4074835_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.4e-120	76.5
AZP52491.1\|4074827_4075355_+\|tail	phage tail protein I	Q37841	Escherichia_phage	4.0e-75	76.0
AZP52492.1\|4075364_4077881_+\|tail	phage tail protein	Q858V4	Yersinia_virus	1.0e-75	43.1
AZP53390.1\|4077890_4078346_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.9e-25	48.5
AZP52493.1\|4078477_4079647_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	7.3e-178	77.6
AZP52494.1\|4079660_4080170_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	6.2e-65	71.5
AZP52495.1\|4080236_4080518_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.3e-24	58.9
AZP52496.1\|4080550_4080673_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	1.4e-10	76.3
AZP52497.1\|4080665_4083140_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	1.5e-188	62.3
AZP52498.1\|4083152_4083623_+\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	6.0e-46	61.7
AZP52499.1\|4083619_4084780_+	phage late control D family protein	S4TRX8	Salmonella_phage	1.6e-145	68.0
AZP53391.1\|4085099_4085321_+	DNA-binding transcriptional regulator	F1BUT0	Erwinia_phage	3.1e-21	68.6
AZP52500.1\|4086273_4086606_+	hypothetical protein	NA	NA	NA	NA
4085424:4085448	attR	NA	NA	NA	NA
AZP52501.1\|4087210_4087747_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.3e-17	33.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034483

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection