CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025472	Enterococcus mundtii strain Pe161 plasmid pPe16101, complete sequence	0 crisprs	NA	0	0	0	0
CP025473	Enterococcus mundtii strain Pe161 chromosome, complete genome	0 crisprs	csa3,cas14j,DinG,cas3,DEDDh,cas2	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

756667 : 765256

Streptococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP92316.1\|756667_757330_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.9e-58	52.2
AZP92317.1\|757326_757656_+	hypothetical protein	NA	NA	NA	NA
AZP92318.1\|757664_758603_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.0e-32	33.1
AZP92319.1\|758642_759467_+	signal peptidase	NA	NA	NA	NA
AZP92320.1\|759459_759807_+	DUF972 domain-containing protein	M1PFV3	Streptococcus_phage	1.1e-17	40.2
AZP92321.1\|759946_760816_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-94	62.7
AZP92322.1\|760977_762111_+	DNA polymerase IV	NA	NA	NA	NA
AZP92323.1\|762213_762816_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	1.4e-52	58.6
AZP92324.1\|763066_765256_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	6.2e-287	66.0

DBSCAN-SWA_2

1144305 : 1153338

Gordonia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP92646.1\|1144305_1145601_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	4.2e-17	32.0
AZP92647.1\|1145743_1146121_-	hypothetical protein	NA	NA	NA	NA
AZP92648.1\|1146376_1147108_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-45	41.4
AZP92649.1\|1147111_1147366_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AZP92650.1\|1147367_1148042_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AZP92651.1\|1148042_1150265_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.6e-149	41.0
AZP92652.1\|1150249_1151689_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.4e-53	33.3
AZP92653.1\|1151719_1152763_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.6e-62	43.3
AZP92654.1\|1152759_1153338_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.5e-26	35.9

DBSCAN-SWA_3

2142162 : 2227714

Enterococcus_phage(28.21%)

holin,integrase,transposase,tail,capsid,terminase

attL 2142088:2142147|attR 2195494:2196860

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2142088:2142147	attL	NA	NA	NA	NA
AZP93464.1\|2142162_2143324_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-79	51.3
AZP93465.1\|2143490_2143700_+	hypothetical protein	NA	NA	NA	NA
AZP94032.1\|2144276_2144591_+	hypothetical protein	NA	NA	NA	NA
AZP93466.1\|2144643_2145417_-	hypothetical protein	NA	NA	NA	NA
AZP93467.1\|2145522_2145768_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZP93468.1\|2145909_2148882_+	NACHT domain-containing protein	NA	NA	NA	NA
AZP93469.1\|2150753_2151916_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-79	51.3
AZP93470.1\|2152739_2152958_-	hypothetical protein	NA	NA	NA	NA
AZP93471.1\|2152972_2155648_-	hypothetical protein	NA	NA	NA	NA
AZP93472.1\|2155634_2155853_-	hypothetical protein	NA	NA	NA	NA
AZP93473.1\|2155867_2156752_-	DNA replication protein DnaD	A0A1P8BL54	Lactococcus_phage	5.6e-13	36.3
AZP93474.1\|2156900_2157203_-	DNA-binding protein	NA	NA	NA	NA
AZP93475.1\|2157399_2158197_+	transcriptional regulator	NA	NA	NA	NA
AZP93476.1\|2158247_2159390_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	4.6e-60	36.3
AZP93477.1\|2160206_2160581_+	hypothetical protein	NA	NA	NA	NA
AZP93478.1\|2160628_2161921_+	D-serine ammonia-lyase	NA	NA	NA	NA
AZP93479.1\|2162089_2162380_-	hypothetical protein	NA	NA	NA	NA
AZP93480.1\|2162704_2163070_+	hypothetical protein	NA	NA	NA	NA
AZP93481.1\|2163738_2164359_+	hypothetical protein	NA	NA	NA	NA
AZP93482.1\|2164909_2166460_-	hypothetical protein	NA	NA	NA	NA
AZP93483.1\|2166492_2167509_-	hypothetical protein	NA	NA	NA	NA
AZP93484.1\|2167509_2167773_+	hypothetical protein	NA	NA	NA	NA
AZP93485.1\|2167762_2168755_-	N-acetylmuramoyl-L-alanine amidase	Q8W5Y8	Listeria_phage	2.7e-11	31.2
AZP93486.1\|2168751_2169009_-	hypothetical protein	NA	NA	NA	NA
AZP93487.1\|2169043_2169376_-	hypothetical protein	A0A0U4JE55	Bacillus_phage	6.1e-05	40.5
AZP93488.1\|2169377_2169611_-	hypothetical protein	NA	NA	NA	NA
AZP93489.1\|2169628_2170435_-	hypothetical protein	NA	NA	NA	NA
AZP93490.1\|2170724_2171030_-	hypothetical protein	NA	NA	NA	NA
AZP93491.1\|2171031_2173137_-	DUF2479 domain-containing protein	A0A096XSZ6	Enterococcus_phage	4.5e-85	48.3
AZP93492.1\|2173155_2174199_-	hypothetical protein	NA	NA	NA	NA
AZP93493.1\|2174198_2175074_-	hypothetical protein	Q5K5I5	Oenococcus_phage	2.5e-13	34.7
AZP93494.1\|2175073_2177617_-	hypothetical protein	A0A0S2MYN1	Enterococcus_phage	1.9e-05	33.3
AZP93495.1\|2177686_2180122_-	hypothetical protein	A0A1X9IGH8	Lactococcus_phage	5.1e-40	35.2
AZP93496.1\|2180114_2180684_-	hypothetical protein	Q5YA62	Bacillus_phage	4.8e-42	48.4
AZP93497.1\|2180692_2181154_-	hypothetical protein	B3GW11	Streptococcus_phage	3.0e-10	37.0
AZP93498.1\|2181181_2181343_-	hypothetical protein	NA	NA	NA	NA
AZP93499.1\|2181297_2181774_-\|tail	phage tail protein	NA	NA	NA	NA
AZP93500.1\|2181784_2182162_-\|capsid	minor capsid protein	Q5YA65	Bacillus_phage	2.0e-12	32.8
AZP93501.1\|2182161_2182524_-\|capsid	minor capsid protein	A0A1S5SEB7	Streptococcus_phage	1.8e-13	35.9
AZP93502.1\|2182523_2182859_-\|capsid	minor capsid protein	NA	NA	NA	NA
AZP93503.1\|2182855_2183311_-	hypothetical protein	NA	NA	NA	NA
AZP93504.1\|2183342_2183507_-	hypothetical protein	NA	NA	NA	NA
AZP93505.1\|2183503_2184391_-\|capsid	capsid protein	U3PDP8	Lactobacillus_phage	1.2e-66	46.9
AZP93506.1\|2184404_2184995_-	hypothetical protein	D2J060	Enterococcus_phage	2.1e-16	36.5
AZP93507.1\|2185228_2186377_-\|capsid	phage capsid protein	U3PFU0	Lactobacillus_phage	9.4e-53	33.7
AZP93508.1\|2186381_2187920_-\|capsid	phage capsid protein	Q5YA75	Bacillus_phage	3.8e-97	40.9
AZP93509.1\|2187934_2189230_-\|terminase	PBSX family phage terminase large subunit	I1TLD6	Bacillus_phage	1.4e-129	55.6
AZP93510.1\|2189204_2190080_-\|terminase	small subunit of terminase	C9E2I6	Enterococcus_phage	6.7e-67	64.4
AZP93511.1\|2190126_2190813_-	hypothetical protein	NA	NA	NA	NA
AZP93512.1\|2190869_2191079_-	hypothetical protein	A8ATN7	Listeria_phage	8.0e-11	57.8
AZP93513.1\|2191216_2192488_-	DNA modification methylase	A0A1B0RXE5	Streptococcus_phage	2.7e-93	44.4
AZP93514.1\|2192477_2192720_-	hypothetical protein	NA	NA	NA	NA
AZP93515.1\|2192772_2193714_-	hypothetical protein	NA	NA	NA	NA
AZP93516.1\|2194315_2195478_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-79	51.3
AZP93517.1\|2196002_2196440_-	hypothetical protein	NA	NA	NA	NA
AZP93518.1\|2196773_2197049_+	hypothetical protein	NA	NA	NA	NA
2195494:2196860	attR	NA	NA	NA	NA
AZP93519.1\|2197063_2197354_-	hypothetical protein	NA	NA	NA	NA
AZP93520.1\|2197350_2197545_-	hypothetical protein	NA	NA	NA	NA
AZP93521.1\|2197541_2197865_-	hypothetical protein	NA	NA	NA	NA
AZP93522.1\|2197904_2198087_-	hypothetical protein	NA	NA	NA	NA
AZP94033.1\|2198055_2198244_-	hypothetical protein	NA	NA	NA	NA
AZP93523.1\|2198434_2198686_+	hypothetical protein	NA	NA	NA	NA
AZP93524.1\|2198724_2199084_-	DNA-packaging protein	A0A1S5SFT9	Streptococcus_phage	5.4e-31	53.0
AZP93525.1\|2199737_2200655_-	phage replisome organizer	C9E2N2	Enterococcus_phage	6.2e-55	51.4
AZP93526.1\|2200657_2201440_-	hypothetical protein	A0A0S2MYA3	Enterococcus_phage	4.4e-78	57.8
AZP93527.1\|2201472_2202357_-	DUF1351 domain-containing protein	A0A0S2MYB3	Enterococcus_phage	9.5e-29	32.1
AZP93528.1\|2202357_2203050_-	single-stranded DNA-binding protein	A0A0S2MYH3	Enterococcus_phage	1.2e-42	40.8
AZP93529.1\|2203278_2203464_-	hypothetical protein	NA	NA	NA	NA
AZP93530.1\|2203460_2203649_-	hypothetical protein	D2IZW5	Enterococcus_phage	2.2e-07	56.9
AZP93531.1\|2203660_2204416_-	phage repressor protein/antirepressor Ant	L0P8P6	Lactobacillus_phage	1.1e-76	57.8
AZP93532.1\|2204433_2204742_-	DUF771 domain-containing protein	NA	NA	NA	NA
AZP93533.1\|2204745_2204949_-	hypothetical protein	NA	NA	NA	NA
AZP93534.1\|2205254_2205590_+	XRE family transcriptional regulator	D2IZV9	Enterococcus_phage	7.8e-32	57.0
AZP93535.1\|2205599_2206004_+	ImmA/IrrE family metallo-endopeptidase	D2IZV8	Enterococcus_phage	1.0e-09	35.6
AZP93536.1\|2206057_2206240_+	hypothetical protein	NA	NA	NA	NA
AZP93537.1\|2206283_2207456_+	hypothetical protein	S5MBZ0	Brevibacillus_phage	6.6e-86	45.3
AZP93538.1\|2207541_2208933_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AZP93539.1\|2208937_2209408_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
AZP93540.1\|2209394_2210630_-	cysteine desulfurase	Q2XUY6	environmental_halophage	8.7e-105	44.7
AZP93541.1\|2210626_2211916_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
AZP93542.1\|2211930_2212704_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	5.3e-07	25.7
AZP93543.1\|2212916_2213765_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
AZP93544.1\|2213788_2214475_-	ABC transporter permease	NA	NA	NA	NA
AZP93545.1\|2214467_2215502_-	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-29	37.0
AZP93546.1\|2215886_2216225_-	glycine cleavage system protein H	NA	NA	NA	NA
AZP93547.1\|2216226_2216583_-	hypothetical protein	M1PLC0	Streptococcus_phage	6.1e-27	49.5
AZP93548.1\|2216589_2217777_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
AZP93549.1\|2217964_2218786_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZP93550.1\|2219076_2220045_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
AZP93551.1\|2221293_2221758_-	cysteine methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	7.5e-17	36.7
AZP93552.1\|2221954_2222908_+	glycosyltransferase	V5USA4	Oenococcus_phage	1.0e-81	49.3
AZP93553.1\|2223127_2223580_+	hypothetical protein	NA	NA	NA	NA
AZP93554.1\|2223728_2224235_+	hypothetical protein	NA	NA	NA	NA
AZP93555.1\|2224286_2226527_-	hypothetical protein	NA	NA	NA	NA
AZP93556.1\|2226564_2227233_-	hypothetical protein	NA	NA	NA	NA
AZP93557.1\|2227330_2227714_-\|holin	holin	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage