CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020373	Shewanella sp. TH2012, complete genome	1 crisprs	csa3,WYL,DinG,cas3,DEDDh	0	0	6	0
CP020374	Shewanella sp. TH2012 plasmid pSTH1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP020373_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020373_1

3345200-3345296

Orphan

Consensus_repeat	Method
CAACTGAGCTAATGTCGCGTCTCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP020373_1

>merge|CP020373|1|3345200-3345296|CRISPRCasFinder
CAACTGAGCTAATGTCGCGTCTCGTGCTGTATCACCCATTTACCGATTTTAAGGTATCGCCCTTTCTTACCGGCAACTGAGCTAATGTCGCATCTCG

>CP020373|1|1|3345200-3345296|CRISPRCasFinder
CAACTGAGCTAATGTCGCGTCTCG	TGCTGTATCACCCATTTACCGATTTTAAGGTATCGCCCTTTCTTACCGG
CAACTGAGCTAATGTCGCATCTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP020373.1\|AZQ12005.1\|3335230_3336538_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|182934
CP020373.1\|AZQ12007.1\|3336929_3337868_-\|tRNA-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|234626
CP020373.1\|AZQ12017.1\|3348008_3348887_+\|Threonine/homoserine-exporter-RhtA	unknown	unknown	gnl\|CDD\|223769
CP020373.1\|AZQ12015.1\|3346095_3347109_+\|Putative-ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
CP020373.1\|AZQ12016.1\|3347145_3348009_+\|Phosphatidylserine-decarboxylase-proenzyme	unknown	unknown	gnl\|CDD\|234591
CP020373.1\|AZQ12012.1\|3343274_3343463_+\|hypothetical-protein	unknown	unknown	unknown
CP020373.1\|AZQ12014.1\|3345397_3345943_-\|Oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
CP020373.1\|AZQ12021.1\|3353303_3354230_+\|Glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240625
CP020373.1\|AZQ12019.1\|3352191_3352914_+\|Glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176499
CP020373.1\|AZQ12023.1\|3356261_3356453_+\|Bacterioferritin-associated-ferredoxin	unknown	unknown	gnl\|CDD\|381078
CP020373.1\|AZQ12020.1\|3352916_3353249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378746
CP020373.1\|AZQ12004.1\|3334065_3335199_-\|Modulator-of-FtsH-protease-HflK	unknown	unknown	gnl\|CDD\|236799
CP020373.1\|AZQ12022.1\|3354407_3355985_-\|Aerotaxis-receptor	unknown	unknown	gnl\|CDD\|214599
CP020373.1\|AZQ12010.1\|3341129_3341591_-\|tRNA-threonylcarbamoyladenosine-biosynthesis-protein-TsaE	unknown	unknown	gnl\|CDD\|182615
CP020373.1\|AZQ12008.1\|3337851_3339810_-\|DNA-mismatch-repair-protein-MutL	unknown	unknown	gnl\|CDD\|234630
CP020373.1\|AZQ12006.1\|3336570_3336846_-\|RNA-binding-protein-Hfq	unknown	unknown	gnl\|CDD\|179001
CP020373.1\|AZQ12018.1\|3348940_3352165_+\|Miniconductance-mechanosensitive-channel-MscM-precursor	unknown	unknown	gnl\|CDD\|236798
CP020373.1\|AZQ12013.1\|3343885_3344341_-\|hypothetical-protein	unknown	unknown	unknown
CP020373.1\|AZQ12009.1\|3339822_3341133_-\|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor	unknown	unknown	gnl\|CDD\|236692
CP020373.1\|AZQ12011.1\|3341656_3343147_-\|Bifunctional-NAD(P)H-hydrate-repair-enzyme-Nnr	unknown	unknown	gnl\|CDD\|182554

Protein	Function_ID	Function_description	E-value
CP020373.1\|AZQ12005.1\|3335230_3336538_-\|GTPase-HflX	gnl\|CDD\|182934	PRK11058, PRK11058, GTPase HflX; Provisional.	0
CP020373.1\|AZQ12007.1\|3336929_3337868_-\|tRNA-dimethylallyltransferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.88007e-170
CP020373.1\|AZQ12017.1\|3348008_3348887_+\|Threonine/homoserine-exporter-RhtA	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.29813e-15
CP020373.1\|AZQ12016.1\|3347145_3348009_+\|Phosphatidylserine-decarboxylase-proenzyme	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
CP020373.1\|AZQ12014.1\|3345397_3345943_-\|Oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	6.15116e-133
CP020373.1\|AZQ12021.1\|3353303_3354230_+\|Glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	1.90196e-119
CP020373.1\|AZQ12019.1\|3352191_3352914_+\|Glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176499	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases.	3.0362e-56
CP020373.1\|AZQ12023.1\|3356261_3356453_+\|Bacterioferritin-associated-ferredoxin	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	5.16835e-20
CP020373.1\|AZQ12020.1\|3352916_3353249_-\|hypothetical-protein	gnl\|CDD\|378746	pfam11872, DUF3392, Protein of unknown function (DUF3392). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.56592e-36
CP020373.1\|AZQ12004.1\|3334065_3335199_-\|Modulator-of-FtsH-protease-HflK	gnl\|CDD\|236799	PRK10930, PRK10930, FtsH protease activity modulator HflK.	6.61611e-163
CP020373.1\|AZQ12022.1\|3354407_3355985_-\|Aerotaxis-receptor	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.35542e-66
CP020373.1\|AZQ12010.1\|3341129_3341591_-\|tRNA-threonylcarbamoyladenosine-biosynthesis-protein-TsaE	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	5.4616e-71
CP020373.1\|AZQ12008.1\|3337851_3339810_-\|DNA-mismatch-repair-protein-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
CP020373.1\|AZQ12006.1\|3336570_3336846_-\|RNA-binding-protein-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	6.71399e-45
CP020373.1\|AZQ12018.1\|3348940_3352165_+\|Miniconductance-mechanosensitive-channel-MscM-precursor	gnl\|CDD\|236798	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional.	0
CP020373.1\|AZQ12015.1\|3346095_3347109_+\|Putative-ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
CP020373.1\|AZQ12009.1\|3339822_3341133_-\|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	4.76357e-94
CP020373.1\|AZQ12011.1\|3341656_3343147_-\|Bifunctional-NAD(P)H-hydrate-repair-enzyme-Nnr	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	3.71856e-153

>CP020373.1|AZQ12013.1|3343885_3344341_-|hypothetical-protein
MRIQQLRELLEYLATCRLEMAQLYGRLHAQADSSRVKLMLEYFQQQQKHVAQTLEDYVDDAPSRLLDTWYKDLIFEDFIKRCQSTMLPANMQEDDVLSLHLDLENRLIGLLEKTVETSQTEEIRSALADLVRVEKIQQQRLVHSTIRMDDI
>CP020373.1|AZQ12012.1|3343274_3343463_+|hypothetical-protein
MTGTRTMLLTLLILVLSVLLISLPLSSNILIQALLLLCVLLVAVGLYKAITLPLQDKDNDKS
>CP020373.1|AZQ12011.1|3341656_3343147_-|Bifunctional-NAD(P)H-hydrate-repair-enzyme-Nnr
MSALPISLPQSLYSAAQVKAAEQEAVKRGLCSLYELVEQAGSAAMATLESLASAHCQTVVLVGKGNNGADALVLARLLLTKGNRPRVLLFGEGKTAEYAEALQAFIAAGGTTEVFSEAALEGAEVIVDGLLGTGVAGELSEPLNQCIEAVNAQNAWVLSLDVPSGVNADTGNVNPMAIEADVTLCFGGLKQGLFTSRARHFAGKVLYASVGLGEILAETEPACQRVDASFLTDLLGRRARDSHKGKSGKVTIMGGNYGMAGAVRLAGEACLRSGAGLVTVISRPEHQLTVNANRPELMFWGCELVDMEVYLRLGWADVLVLGPGLGKDDWGYNLYKAVGLSDKPCVLDADALNLLAKEPCRQINRVLTPHPGEASRLLGLSTAEVEADRFDAIRRLQETFGGVVLLKGAGTLIFDGTTLVVAPVGNPGLASGGCGDVLSGIIAALMAQGLDTMTATVAGVVIHGEAADLAAEAGERGMLASDLMPFIRQLVNSDLI
>CP020373.1|AZQ12010.1|3341129_3341591_-|tRNA-threonylcarbamoyladenosine-biosynthesis-protein-TsaE
MTDVKIFLENDAQTVEIGQKLAQRIRPPLTLYLTGELGAGKTTLSRGLIQSLGHKGAVKSPTYTLVEPYELPGVEVYHFDLYRLADPEELEFMGIRDYFSDTSLCIVEWPDRGQGLLPEADLHLHLAYSGAGRELNIHAGSEAGRTVIEQLAE
>CP020373.1|AZQ12009.1|3339822_3341133_-|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor
MNRTINRLLFIFFLLFSIEGLAANKLEGVRIWAAPESTRVVFDLTAKPSYTQSTLVAPDRLVVDLDDTQTKLALDKIANNSKLVKRVRLSKPPKKGVLRVVIDLNRPVNANLFSLPPTDPYGNRLVVDLEEKTNDARTIVAPTESARDIIVAIDAGHGGDDPGSIGPSGLYEKKVALEIAKRVQKKIDATPGMKAVMTRTGDYFVNLNKRSDLARKHRADLLVSIHADAFTSPNPKGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNADNEQYLAMTLLDMSMDRSMAISHSIASDILKDLGKVTELHKSRPESASLAVLKSPDIPSILVETGFISNPKEESLLKNSAHQDKLARAIHAGVLRYFEANAPSDSLLAKRSGSSKHKVSRGESLSVIAAQYGVSVTALRQANNLKSDTLRIGQQLVIPKG
>CP020373.1|AZQ12008.1|3337851_3339810_-|DNA-mismatch-repair-protein-MutL
MAIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNGGGIPKDELALALARHATSKVQTLEDLEAILSFGFRGEALASISSVSRLTLTSRTAEQAEAWQAYAEGSEVALKVMPAAHPVGTTIEVADLFFNTPARRRFLKSDKTEFTHIDEWLKRIALVRSDVHFSLTHNGKPVRQFRAASTEAQYLQRLGQVAGRAFADTAIKVDCRHDGMHLGGYLQSPALNDSVDCHYFYVNGRLVRDRLVNHAVRQAFAECGALEQGGFVLRLDVDPHQVDVNVHPAKHEVRFHQARYVHDFILQVLQSALSQMRDLPLTTNALKDDFSSAQSRDNEPEPAKAVAESHAGYRTESAEYVDAFALGGGMQHSGVGSHNLRGAAPASASAGFGQTTSERGSYSTSSGQGSRYVRDNFAQPGFGDKSSRDRQLAAQHYGELLSTTAASPSTTASGMAANAAGQQLSVPSMPPLLDGQYWVLCEGANLKLLSLAKVAKDLLQQELIVRLPTGLIGQPLLMPVSVQADADWADILQSRDALLRKMGLELAIRYQQLIIKKVPPYLRDSQLARLIPELLAWIQHEAPADEALAHWLAAQVSGFEAAPRLWQRLQALDTDAQQRILESARELPWQTWLDEHKH
>CP020373.1|AZQ12007.1|3336929_3337868_-|tRNA-dimethylallyltransferase
MNTNTDRTDLPKVLFLMGPTASGKTALALELAEHHNCEIISVDSALIYRGMDIGTAKPTAAELARGPHRLIDILDPLESYSAADFRADAVREIEDILSRGKTPLLVGGTMMYFKTLLDGLSPLPSADDAVRAGIAADVEAKGWQALHDELKQIDPVAAERIHPNDPQRLSRAIEVYRITGKTLTELTQTKAESLPYRMVQFAIAPKERKTLHQLIGQRFEAMLEQGFIDEVAGLKDRGDLHLELPSMRCVGYRQVWQYLEGQYDHDTMVEKAVAATRQLAKRQLTWLRGWPDLQWLISGDEGNLEKLVQQSR
>CP020373.1|AZQ12006.1|3336570_3336846_-|RNA-binding-protein-Hfq
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAISTVVPSRPFNVGNHQGGGSNYNAQQDDSASEQ
>CP020373.1|AZQ12005.1|3335230_3336538_-|GTPase-HflX
MFDRYEAGETAVLVHIDFTDEGSREDLAELQLLVESAGARAVGVITGSRRAPDRKFFVGSGKAEELAAMVAATDANVVIFNHALSPAQERNLEQVCHCRVLDRTTLILDIFAQRARTHEGKLQVELAQLRHMSTRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRGRIKTINRRLEKVDKQREQSRRARQRSDMPAVSLVGYTNAGKSTLFNTLTSSEVYAADQLFATLDPTLRKLDLPDGAAILADTVGFIRHLPHDLVAAFKATLQETREADLLLHVIDCADEKMRDNIEQVQAVLKEIDADEIPQLIVCNKIDLVEGLQPAIDRDDTGKPFRVWLTAQQDQGLDLLRQAIQELVGNVIAELTLKIPATAGHYLGQFYRLDAIQQKEYDDLGNCILSVRMSDADWRRLAKQSQGELETFIVDTATDRVVC
>CP020373.1|AZQ12004.1|3334065_3335199_-|Modulator-of-FtsH-protease-HflK
MAWNEPGNKGQDPWGNKGGNDKGPPDLDEVFRNISKRFGGKGNGVGFGGLGIILALGAAVWFLSGFYTIKTAERGVHLRFGEYIGEVGPGLRWKATFIDEVFPVDVEAFRTIPAAGSILTSDENVVQVELAVQYKVTDAYQYLFSAVDANSSLREATDSALRYVVGHSRMDDILTTGRDKIRTDTWAELERIIEPYKLGLTIVDVNFLPARPPEEVKDAFDDAIAAQEDEQRYIREAEAYQREVEPRARGQEQRIAEDARAYKAQVVQQAQGAVARFDKMLPEYKAAPEVTRQRLYIEAMEEVLSGNNKVLIDAKNNGNLMYLPLDKLMNPAVGASNNGDSGVSSQNHVDSSASSRSTGMPVSGRPSREDRVRQGRE
>CP020373.1|AZQ12014.1|3345397_3345943_-|Oligoribonuclease
MAADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQELNILAQGPVLAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASTHTEADAIAQTIEFLSQYVPKGASPMCGNSVGQDRRFLNKYMRELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQALLDIQESIAELQFYREKVFKI
>CP020373.1|AZQ12015.1|3346095_3347109_+|Putative-ribosome-biogenesis-GTPase-RsgA
MRANHEKRLNRGKPEKQLPELQDSSLGAEEPAIVISRFGQHADVEVGSGEIIRCNIRRTVQSLVTGDKVIVRQAQDDGSAIGGVVEAVHPRTSSLTRPDLYDGVKIIAANIDQILIVTSVVPAFTTQIIDRYLVASEDTGIKPVIILNKMDLLDADSRNDIEQALKRYESLGYPVYQVSSKSKEGIETLQGLLKDKISVFVGQSGVGKSSMINALLPDAELLTGDVSENSGLGQHTTTTARLLHLPSGGDLIDSPGVREFALWHLPADRVSWCFVEFRDYLGTCKFRDCKHQDDPGCSIREALEDGKIHQDRFNNYHRIIASLDEQRHARHFRHSEE
>CP020373.1|AZQ12016.1|3347145_3348009_+|Phosphatidylserine-decarboxylase-proenzyme
MDKVKIALQYIMPKHLVSRIVGKFAAAEAGAATTAFIKWFIKQYGINMNEALHSEPEAYKTFNDFFTRELKPGLRPVTADKDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQADDAARFEGGDFATIYLAPKDYHRIHMPIRGTLSKMTYVPGELFSVNPLTARYVPGLFARNERVVAIFETEKGPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPDALTLEKGAEMGRFKLGSTVVMLFAKDAIDEFADGVEPEAVTRMGQPFAKLED
>CP020373.1|AZQ12017.1|3348008_3348887_+|Threonine/homoserine-exporter-RhtA
MSKGAPSGLLELHLAVLLFGGTALFSKLIPLGALDITVFRCAIATLVLALIVKLSRQPIRLRQLRDYGIALMLGVIVSLHWVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPWVNGTRLQLQDIICGIAVLTGVALLIPEASLGNDVTLGILIGILSAALFTARNLLHKRYFAQYSGPQAMFYQTAVAAVFLGSFVESNPTELDAHVWQLLLLLGVVFTAMPHALFTSALRHLSAKTVGLVSCLQPFYGTVLALLLLGESPSSSTLIGGLLVVATAVFETTQSHRSQRQKKA
>CP020373.1|AZQ12018.1|3348940_3352165_+|Miniconductance-mechanosensitive-channel-MscM-precursor
MPKPGAMLRILLIALVFSSFLCQANSPLQLDKRLGFTPTETQTQATPAQQTQDLLSSIETLSQMAGEYQDQLLSFDTEKATLNKALASAQKELQLARRQDLNQQASAAYLRLSELKETESQLSQQQSSLLQRHNQLPGAVSSARQALMQHQKAPLSAPDTAMGLLQQTQRQYYEQNLATLEAEQTSSQKRIELVQLRLKVVRAQLAQQELFIEKLNRAISNERQAITDATLADSLAPATSTDDALTRRLKANNELLGQKLQTLTLQIDNVVDQQEAAEKRYQEQSLQISNIQEQIAWVKTNSAFGERFLQMLQNLPKPPNQEALQNQIADTRLARYQMEQDLARNQEQLDEKAQFSDAQYQLLQAESKLLKQLLQGFDQLLSELAKLKVSQNNLTAQYHTLKNTLSEHLFWVPNAAPIGKLWVTDLHRSLIWLVQQAPWQQLSQALDEQSDYWSWWLILLVLCLVVQDIVKPRFDRALSRFIAPVGNVTQDDFIYTFETLLVTMGYALLRPSPVILAGAFFMLSQYNLVQAVGCGLLVMGCVYLVYRFMFLLSVEKGVLIGHFRRPKEVIEHGKQRLKSLMLITIPLVAIVSFTEILELSLVRNSLGRGAFIILCLQLFWFYRDILNFARKYRAEQQDPGKNRRLLQRLLWMVLLLTPVISAVLAWRGFYFTAFQLLLQLQLSLLLALGFLLLYQLIKRWMLIERRRIAFDRAKAKRAEKLAQRERGETVLADSQDVYEEPKVDLETISSQSLGLVRSLLILAFLASLIGLWTQTHSAMFSFLDGINLWNSTALIDGSEQLVPVTLKSVLFGILIMVFSLMIATNLPGLLELVLLQRLDLTPGTGFAITTVSRYLVVMVGTLVGFSTLGMEWSKLQWLIAALSVGLGFGLQEIFANFISGLIILFEKPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIVPNKAFITEQLINWSLSDPITRVIIKVAVARDSDPAKVEASLYQAIKECQHALHTPEPEVWFAGFGQHTQDYEVRAYAKDMGARWPLRHDLHKRISAKLKENNLELAFPQMEITINQTTNVPGRDSQLQLR
>CP020373.1|AZQ12019.1|3352191_3352914_+|Glycerophosphoryl-diester-phosphodiesterase
MLIFAHRGASGYAPENTLKAMELALSMGAEAIELDVHCVEGELVVFHDRHLAGKSNGKGLIHRQTLASLANVTVLGEAIPTLWQVLELVRGRCIVNIELKGVGTAAPLVKLYPRILRELGFTSAQLIISSFHHPMLAEFKAQLPEARVAPLLGSLPLDGAMIATRLDAYSLHLDVSFISQQIVDDAHQRGVLVYVYTVDDADDLRALRAMGVDGAFCNFPDRARDALSEPDQCDYRGWFE
>CP020373.1|AZQ12020.1|3352916_3353249_-|hypothetical-protein
METIKGLTHDLASYLYPWMSEIATAMVACILIVLAPDLNRAVKRLVGARAFVVRTLIFILVNAFGFGLLIVWASPHLAATLRSLSPVWLMAVLSFSFIFVGVWAERQRQA
>CP020373.1|AZQ12021.1|3353303_3354230_+|Glyoxylate/hydroxypyruvate-reductase-A
MRHKLLLLTRENDRYRSLLASCHLPDLELLNDDPAGIRRADIWLAEPGLAAPLLGHADRLRWMQSTFAGVDLLVKPRQRRDYLLTNVRGIFGPLMSEYLFGYLLARQREHQLYKSQQQQKVWLPGSYKTLQGSELLLLGTGSIAKHIAQTAKHFGMRVTGINRCAKPTVGFDEVSSLDALPELIQRADAIASILPSTEQTRGALNAHTLGLMKDDAVLFNLGRGDVLDLDALAMQMSQKPAQQAVLDVFNQEPLPEEHPIWSLDNVIITPHIAAPSFPEQVAEIFTNNYHKFLMGESLSHRVNFERGY
>CP020373.1|AZQ12022.1|3354407_3355985_-|Aerotaxis-receptor
MRKNLPVTQKENDYPSDWILLSTTDTKSIIKYANPAFCKVAGYELSQMEGQPHNMVRHPDMPPAAFEDLWSTIKKGNPWKGLVKNRCANGDHYWVDAFVTPITHNGQIVEYQSVRTKPTRASVERAEAAYKELNQKGSVSRLKVKTTMTQKLALVAALAMLPGLYLAFSSGGLGFVAWLLSVAILFGGGLMCLRRYHELVKKAQSIYNNPLMTYLYTGHTDCVAQIDLAMHMQSSELKAVLGRALDSCEQSSANAHSSAAKGEDVQGNSESLQYEMDQVATAIQEMTATLQDMACNCSDAANASQRASDESIAGDMIVTNTVKSIESMSTQLVDTSGVIADLEAQSKSIGTVLDVIQSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTHESTTEIQSMITLLQQGTNKAVASMHQGVDKAQACVELADKAGEALRSIREAVASITDMTHHIASAVEEQSSVSNEVSRNIVNASQLATSSSQLGEEMVHLNRGVVEKIGSQEALVKQFLLRSFKGK
>CP020373.1|AZQ12023.1|3356261_3356453_+|Bacterioferritin-associated-ferredoxin
MYVCVCYAVTDTQIQQAVHQGDTTLAAVRKRLGVGSQCGKCIQMTLEVIERQLDKEPNYYEVA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

642247 : 651009

Staphylococcus_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ09700.1\|642247_643375_-	diadenosine tetraphosphatase	A0A1V0SLL4	Klosneuvirus	2.4e-16	28.1
AZQ09701.1\|643574_645242_-	putative ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	2.4e-41	28.6
AZQ09702.1\|645484_646738_+	Serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.9e-102	55.1
AZQ09703.1\|646842_647292_+	Transcriptional repressor NrdR	NA	NA	NA	NA
AZQ09704.1\|647345_648488_+	Riboflavin biosynthesis protein RibD	A0A1V0SE20	Indivirus	2.1e-52	34.5
AZQ09705.1\|648525_649179_+	Riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.5e-26	31.6
AZQ09706.1\|649289_650396_+	Riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.5e-66	39.2
AZQ09707.1\|650532_651009_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-32	51.3

DBSCAN-SWA_2

673466 : 684130

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ09727.1\|673466_674213_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.8e-71	53.1
AZQ09728.1\|674209_674845_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.2e-35	48.3
AZQ09729.1\|674867_675758_+	Murein hydrolase activator NlpD precursor	NA	NA	NA	NA
AZQ09730.1\|675841_676825_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.8e-37	35.7
AZQ09731.1\|676923_679491_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	7.5e-34	25.4
AZQ09732.1\|679766_680831_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	4.4e-113	62.2
AZQ09733.1\|680842_681280_+	Regulatory protein RecX	NA	NA	NA	NA
AZQ09734.1\|681508_684130_+\|tRNA	Alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	9.0e-83	39.6

DBSCAN-SWA_3

1007106 : 1017006

Faustovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ09998.1\|1007106_1008321_+	Cysteine desulfurase	A0A0H3TPH2	Faustovirus	6.7e-33	31.8
AZQ09999.1\|1008351_1008735_+	NifU-like protein	A0A218MKD1	uncultured_virus	1.7e-54	79.8
AZQ10000.1\|1008747_1009071_+	Iron-binding protein IscA	A0A2H4N7N5	Lake_Baikal_phage	2.4e-22	45.8
AZQ10001.1\|1009080_1009605_+	hypothetical protein	NA	NA	NA	NA
AZQ10002.1\|1009662_1011522_+	Chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.7e-105	39.3
AZQ10003.1\|1011545_1011881_+	2Fe-2S ferredoxin	NA	NA	NA	NA
AZQ10004.1\|1012047_1012953_+	Ribosomal protein S6 modification protein	A0A1D8KN85	Synechococcus_phage	7.2e-40	33.8
AZQ10005.1\|1013103_1013265_+	hypothetical protein	NA	NA	NA	NA
AZQ10006.1\|1013439_1013871_+	Nucleoside diphosphate kinase	L7Y4C4	Megavirus	5.1e-20	43.2
AZQ10007.1\|1014351_1017006_+	Vitamin B12 transporter BtuB precursor	A0A0P0I887	Acinetobacter_phage	5.5e-80	29.2

DBSCAN-SWA_4

1144233 : 1184538

Vibrio_phage(91.3%)

plate,transposase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ10115.1\|1144233_1145007_-	putative HTH-type transcriptional regulator	A0A2I7S9A5	Vibrio_phage	5.3e-68	76.2
AZQ10116.1\|1145137_1145395_+	DNA-binding transcriptional regulator Nlp	A0A2I7S995	Vibrio_phage	4.4e-19	64.3
AZQ10117.1\|1145406_1147062_+\|transposase	Bacteriophage Mu transposase	A0A2I7S9A8	Vibrio_phage	3.7e-252	78.0
AZQ10118.1\|1147294_1149046_-\|tail	Phage-related minor tail protein	M4MHE6	Vibrio_phage	6.9e-188	59.5
AZQ10119.1\|1149095_1149998_-\|head	Mu-like prophage major head subunit gpT	A0A0A1IWZ9	Pseudomonas_phage	1.6e-71	47.3
AZQ10120.1\|1150000_1150816_-	Mu-like prophage I protein	A0A2P9JZJ0	Alteromonadaceae_phage	9.7e-36	41.4
AZQ10121.1\|1150927_1151299_-	hypothetical protein	NA	NA	NA	NA
AZQ10122.1\|1151299_1151683_-	Mor transcription activator family protein	A0A0C4UR27	Shigella_phage	7.1e-05	28.4
AZQ10123.1\|1151695_1152178_-	hypothetical protein	NA	NA	NA	NA
AZQ10124.1\|1152298_1152625_-	hypothetical protein	NA	NA	NA	NA
AZQ10125.1\|1152621_1153077_-	hypothetical protein	NA	NA	NA	NA
AZQ10126.1\|1154131_1154500_+	hypothetical protein	A0A2I7S9A8	Vibrio_phage	4.2e-31	63.1
AZQ10127.1\|1154534_1155479_+	hypothetical protein	M4M9P4	Vibrio_phage	7.3e-136	78.2
AZQ10128.1\|1155486_1155657_+	hypothetical protein	NA	NA	NA	NA
AZQ10129.1\|1155661_1155883_+	hypothetical protein	NA	NA	NA	NA
AZQ10130.1\|1155884_1156205_+	hypothetical protein	M4MB90	Vibrio_phage	5.3e-14	50.7
AZQ10131.1\|1156216_1156414_+	hypothetical protein	NA	NA	NA	NA
AZQ10132.1\|1156429_1157050_+	hypothetical protein	M4MHH7	Vibrio_phage	1.9e-76	71.6
AZQ10133.1\|1157062_1157335_+	hypothetical protein	M1PJ71	Vibrio_phage	4.4e-25	66.3
AZQ10134.1\|1157327_1157591_+	hypothetical protein	M1NVN4	Vibrio_phage	2.3e-15	57.1
AZQ10135.1\|1157544_1157751_+	hypothetical protein	NA	NA	NA	NA
AZQ10136.1\|1157740_1158412_+	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	5.9e-31	38.6
AZQ10137.1\|1158439_1158646_+	hypothetical protein	NA	NA	NA	NA
AZQ10138.1\|1158672_1158930_+	hypothetical protein	A0A2I7S9D2	Vibrio_phage	2.8e-21	66.7
AZQ10139.1\|1158939_1159194_+	hypothetical protein	NA	NA	NA	NA
AZQ10140.1\|1159193_1159709_+	hypothetical protein	A0A2I7S9B8	Vibrio_phage	6.5e-46	55.3
AZQ10141.1\|1159705_1160236_+	Mor transcription activator family protein	M4MHG9	Vibrio_phage	8.2e-52	76.3
AZQ10142.1\|1160246_1160696_+	hypothetical protein	A0A2I7S9E3	Vibrio_phage	1.1e-38	54.1
AZQ10143.1\|1160774_1161323_+	putative Peptidoglycan domain protein	A0A2I7S9B9	Vibrio_phage	3.7e-71	70.8
AZQ10144.1\|1161322_1161586_+	hypothetical protein	NA	NA	NA	NA
AZQ10145.1\|1161570_1162167_+	hypothetical protein	M4MB79	Vibrio_phage	2.3e-42	53.9
AZQ10146.1\|1162166_1162385_+	Prokaryotic dksA/traR C4-type zinc finger	M4MHG5	Vibrio_phage	5.1e-16	62.9
AZQ10147.1\|1162384_1162708_+	hypothetical protein	M4M9P7	Vibrio_phage	1.6e-13	44.3
AZQ10148.1\|1162716_1163007_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	1.2e-36	76.0
AZQ10149.1\|1163016_1163598_+	hypothetical protein	A0A2I7S9D1	Vibrio_phage	6.4e-66	73.7
AZQ10150.1\|1163624_1163909_+	hypothetical protein	NA	NA	NA	NA
AZQ10151.1\|1163908_1165504_+	Terminase-like family protein	M1NVQ0	Vibrio_phage	6.0e-223	73.6
AZQ10152.1\|1165500_1167096_+	hypothetical protein	M4M9P3	Vibrio_phage	5.8e-226	73.2
AZQ10153.1\|1167088_1167877_+	Phage Mu protein F like protein	M4M9M5	Vibrio_phage	1.8e-119	75.5
AZQ10154.1\|1168200_1169160_+	Mu-like prophage I protein	M1Q578	Vibrio_phage	1.3e-103	59.1
AZQ10155.1\|1169159_1170059_+\|head	Mu-like prophage major head subunit gpT	A0A2I7S9D0	Vibrio_phage	3.9e-139	81.0
AZQ10156.1\|1170136_1170397_+	hypothetical protein	NA	NA	NA	NA
AZQ10157.1\|1170399_1170954_+	hypothetical protein	M1Q569	Vibrio_phage	3.7e-47	56.1
AZQ10158.1\|1170979_1171642_+	cell envelope integrity inner membrane protein TolA	M4M9M3	Vibrio_phage	5.0e-22	62.1
AZQ10159.1\|1171662_1172097_+	hypothetical protein	A0A2I7S9E9	Vibrio_phage	1.4e-65	84.7
AZQ10160.1\|1172096_1172651_+	Phage virion morphogenesis family protein	A0A2I7S9D7	Vibrio_phage	2.4e-78	78.2
AZQ10161.1\|1172647_1173238_+	hypothetical protein	M4MHF0	Vibrio_phage	7.2e-73	63.8
AZQ10162.1\|1173318_1173504_+	hypothetical protein	A0A2I7S9K4	Vibrio_phage	3.5e-10	49.1
AZQ10163.1\|1173506_1174985_+\|tail	Phage tail sheath protein	M4M9L9	Vibrio_phage	4.5e-233	82.9
AZQ10164.1\|1175002_1175356_+\|tail	Phage tail tube protein	A0A2I7S9D5	Vibrio_phage	2.0e-46	75.2
AZQ10165.1\|1175355_1175700_+	Mu-like prophage FluMu protein gp41	M1NVT1	Vibrio_phage	3.7e-45	80.7
AZQ10166.1\|1175825_1177538_+\|tail	Phage-related minor tail protein	M4MHE6	Vibrio_phage	2.4e-177	59.5
AZQ10167.1\|1177574_1178897_+	hypothetical protein	M4M9N2	Vibrio_phage	1.4e-164	65.6
AZQ10168.1\|1178902_1179982_+	Phage late control gene D protein (GPD)	M1PVV2	Vibrio_phage	3.4e-161	76.2
AZQ10169.1\|1179975_1180578_+	Bacteriophage Mu Gp45 protein	M1Q572	Vibrio_phage	1.7e-82	77.4
AZQ10170.1\|1180597_1181056_+	Phage protein GP46	M4MB61	Vibrio_phage	4.6e-59	75.5
AZQ10171.1\|1181045_1182113_+\|plate	Baseplate J-like protein	M4MHE1	Vibrio_phage	2.2e-165	81.1
AZQ10172.1\|1182097_1182682_+	hypothetical protein	M4M9M8	Vibrio_phage	5.6e-86	76.2
AZQ10173.1\|1182747_1184538_+	hypothetical protein	M4M9L1	Vibrio_phage	6.2e-27	77.8

DBSCAN-SWA_5

1671836 : 1682939

uncultured_Caudovirales_phage(50.0%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ10574.1\|1671836_1674578_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.7e-84	49.6
AZQ10575.1\|1674601_1675213_+	Outer-membrane lipoprotein carrier protein precursor	NA	NA	NA	NA
AZQ10576.1\|1675222_1676551_+	Replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.4e-76	38.3
AZQ10577.1\|1676543_1676918_+	Putative fluoride ion transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-07	42.9
AZQ10578.1\|1676935_1678222_+\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.0e-96	43.7
AZQ10579.1\|1678250_1678373_+	hypothetical protein	NA	NA	NA	NA
AZQ10580.1\|1678468_1678807_-	Sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	6.0e-24	46.8
AZQ10581.1\|1678800_1679094_-	Protein TusB	NA	NA	NA	NA
AZQ10582.1\|1679093_1679450_-	Intracellular sulfur oxidation protein DsrF	NA	NA	NA	NA
AZQ10583.1\|1679459_1679879_-	Sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.7e-18	42.2
AZQ10584.1\|1679904_1680561_-\|protease	Modulator of FtsH protease YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-33	43.0
AZQ10585.1\|1680626_1681529_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
AZQ10586.1\|1681667_1682939_+	Inner membrane transport protein YdhC	S4TR35	Salmonella_phage	1.9e-17	24.0

DBSCAN-SWA_6

2269186 : 2281247

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ11086.1\|2269186_2269582_+	Glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	2.9e-17	38.8
AZQ11087.1\|2269620_2270859_+	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase	NA	NA	NA	NA
AZQ11088.1\|2270894_2271446_+	Lipoprotein NlpE precursor	NA	NA	NA	NA
AZQ11089.1\|2271501_2272521_-	UDP-glucose 4-epimerase	A0A1V0SKV4	Klosneuvirus	1.5e-25	28.6
AZQ11090.1\|2272549_2273908_-	UDP-glucose 6-dehydrogenase YwqF	A0A127AXI2	Bacillus_phage	3.4e-78	36.7
AZQ11091.1\|2274024_2274555_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.1e-43	45.3
AZQ11092.1\|2274621_2275542_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	3.6e-31	33.6
AZQ11093.1\|2275538_2276534_-	Glucose-1-phosphate thymidylyltransferase 2	K7QKA7	Escherichia_phage	6.4e-106	65.2
AZQ11094.1\|2276568_2277645_-	dTDP-glucose 4,6-dehydratase 2	A0A1D7XFE8	Escherichia_phage	1.4e-79	45.0
AZQ11095.1\|2277876_2279136_-	Phosphoglucosamine mutase	NA	NA	NA	NA
AZQ11096.1\|2279309_2281247_-	UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase	K7Y9E1	Megavirus	1.3e-17	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage