CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
AP018829	Asticcacaulis excentricus M6 plasmid pASEM-1 DNA, complete geonome	0 crisprs	NA	0	0
AP018828	Asticcacaulis excentricus M6 DNA, chromosome 2, complete geonome	0 crisprs	NA	0	1
AP018827	Asticcacaulis excentricus M6 DNA, chromosome 1, complete geonome	4 crisprs	csa3,cas2,WYL,cas3,DinG,DEDDh	2	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

495446 : 554213

Acinetobacter_phage(14.29%)

protease,integrase

attL 493536:493555|attR 523732:523751

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
493536:493555	attL	NA	NA	NA	NA
BBF82027.1\|495446_496703_+\|integrase	integrase	Q858E8	Salmonella_phage	2.3e-108	50.1
BBF82028.1\|496845_496965_+	hypothetical protein	NA	NA	NA	NA
BBF82029.1\|497063_498515_+	mobile element protein	K4I413	Acidithiobacillus_phage	4.3e-10	24.1
BBF82030.1\|498511_499279_+	mobile element protein	A0A059NT77	Lactococcus_phage	1.3e-42	40.2
BBF82031.1\|499814_500942_-	succinate dehydrogenase subunit	NA	NA	NA	NA
BBF82032.1\|501084_502866_+	exoenzyme regulatory protein AepA precursor	NA	NA	NA	NA
BBF82033.1\|502903_505672_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	6.1e-130	33.9
BBF82034.1\|505876_507820_+	Isoaspartyl aminopeptidase	NA	NA	NA	NA
BBF82035.1\|508146_508419_+	MOSC domain protein	NA	NA	NA	NA
BBF82036.1\|508758_509124_+	arsenic resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	7.4e-52	78.5
BBF82037.1\|509181_509574_+	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	NA	NA	NA	NA
BBF82038.1\|509617_509965_+	glutathione-dependent thiol reductase	NA	NA	NA	NA
BBF82039.1\|510099_510495_+	hypothetical protein	NA	NA	NA	NA
BBF82040.1\|510523_511111_+	RNA polymerase sigma-70 factor, ECF subfamily	NA	NA	NA	NA
BBF82041.1\|511115_511541_+	hypothetical protein	NA	NA	NA	NA
BBF82042.1\|511588_512410_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
BBF82043.1\|512598_513330_+	hypothetical protein	NA	NA	NA	NA
BBF82044.1\|513371_514787_+	outer membrane protein YfgL	NA	NA	NA	NA
BBF82045.1\|514879_516466_+	GTP-binding protein EngA	NA	NA	NA	NA
BBF82046.1\|516676_516871_+	hypothetical protein	NA	NA	NA	NA
BBF82047.1\|516883_517720_-	phenazine biosynthesis protein	NA	NA	NA	NA
BBF82048.1\|517716_519060_-	acetylornithine aminotransferase	NA	NA	NA	NA
BBF82049.1\|519131_519884_-	oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-06	23.9
BBF82050.1\|519904_521401_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.0e-50	34.0
BBF82051.1\|521516_522014_-	colicin V production protein	NA	NA	NA	NA
BBF82052.1\|522208_523582_-	DNA repair protein RadA	NA	NA	NA	NA
BBF82053.1\|523994_525470_-	replicative DNA helicase	O80281	Escherichia_phage	2.1e-81	39.0
523732:523751	attR	NA	NA	NA	NA
BBF82054.1\|525575_525941_-	hypothetical protein	NA	NA	NA	NA
BBF82055.1\|525940_527587_-\|protease	carboxyl-terminal protease	NA	NA	NA	NA
BBF82056.1\|527700_530097_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	6.6e-08	34.5
BBF82057.1\|530634_531171_+	hypothetical protein	NA	NA	NA	NA
BBF82058.1\|531171_532482_-	rieske (2Fe-2S) domain-containing protein	NA	NA	NA	NA
BBF82059.1\|532478_533171_-	hypothetical protein	NA	NA	NA	NA
BBF82060.1\|533351_534596_+	Na+/H+-dicarboxylate symporter	NA	NA	NA	NA
BBF82061.1\|534765_536106_+	cell division trigger factor	NA	NA	NA	NA
BBF82062.1\|536227_536737_+	hypothetical protein	NA	NA	NA	NA
BBF82063.1\|536869_537499_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	7.4e-60	59.6
BBF82064.1\|537495_538107_-	CicA protein	NA	NA	NA	NA
BBF82065.1\|538357_539617_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.2e-130	59.0
BBF82066.1\|539933_541334_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-08	62.1
BBF82067.1\|541330_542005_-	hypothetical protein	NA	NA	NA	NA
BBF82068.1\|542106_542907_-	27kDa outer membrane protein	NA	NA	NA	NA
BBF82069.1\|542919_544323_-\|protease	putative Zn-dependent protease	NA	NA	NA	NA
BBF82070.1\|544465_547147_-	cytoplasmic axial filament protein CafA	NA	NA	NA	NA
BBF82071.1\|547539_547692_+	hypothetical protein	NA	NA	NA	NA
BBF82072.1\|547875_549108_+	N-acetylmuramoyl-L-alanine amidase	M4ZRP4	Bacillus_phage	4.0e-09	33.5
BBF82073.1\|549277_549781_-	cytochrome C553	NA	NA	NA	NA
BBF82074.1\|549954_550224_-	hypothetical protein	NA	NA	NA	NA
BBF82075.1\|550347_551412_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
BBF82076.1\|551675_551879_-	hypothetical protein	NA	NA	NA	NA
BBF82077.1\|551867_554213_+\|protease	ATP-dependent protease La type I	A0A0R6PGP8	Moraxella_phage	9.2e-196	47.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. AP018827

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CRISPR-Cas detection and classification

Crispr_ID: AP018827_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018827_1

74200-74322

Orphan

Consensus_repeat	Method
TGACGGTGGTGCCTTTTCCCACCGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of AP018827_1

>merge|AP018827|1|74200-74322|CRISPRCasFinder
TATGTGTGGTGTCATATCCCACCGTACCGCTAACGAAAGAGGCTTTGACGGTGGTGCCTTTTCCCACCGTGGCGGGGTTTTAGGCGGTTCCTTTCGGGTGACGGTGGTGCCATTTCCCACCGT

>AP018827|1|1|74200-74322|CRISPRCasFinder
TATGTGTGGTGTCATATCCCACCGT	ACCGCTAACGAAAGAGGCTT
TGACGGTGGTGCCTTTTCCCACCGT	GGCGGGGTTTTAGGCGGTTCCTTTCGGG
TGACGGTGGTGCCATTTCCCACCGT

Protein	Signature genes	Signature genes Name	Protein_function
AP018827.1\|BBF79500.1\|61609_62479_-\|iron-ABC-transporter,-ATP-binding-protein	unknown	unknown	unknown
AP018827.1\|BBF79507.1\|71966_72170_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79505.1\|69045_69234_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79512.1\|77796_78315_+\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase,-FabA-form	unknown	unknown	gnl\|CDD\|179953
AP018827.1\|BBF79502.1\|64059_64665_-\|Smr-family-protein	unknown	unknown	gnl\|CDD\|225396
AP018827.1\|BBF79515.1\|80766_80943_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79517.1\|81482_81662_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79501.1\|62543_63563_+\|fructokinase	unknown	unknown	gnl\|CDD\|238573
AP018827.1\|BBF79503.1\|64788_66201_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182468
AP018827.1\|BBF79508.1\|72390_72507_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79504.1\|66277_68929_-\|sensory-box-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|179385
AP018827.1\|BBF79514.1\|79625_80444_+\|enoyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|223696
AP018827.1\|BBF79513.1\|78350_79574_+\|3-oxoacyl-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|181184
AP018827.1\|BBF79516.1\|80939_81362_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|240572
AP018827.1\|BBF79509.1\|73886_74021_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79518.1\|81718_82405_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198303
AP018827.1\|BBF79510.1\|75879_76863_-\|glyoxylate-reductase	unknown	unknown	gnl\|CDD\|240626
AP018827.1\|BBF79519.1\|82495_83320_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153375
AP018827.1\|BBF79506.1\|69596_70883_+\|integrase	unknown	unknown	gnl\|CDD\|271177
AP018827.1\|BBF79511.1\|76965_77652_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226329

Protein	Function_ID	Function_description	E-value
AP018827.1\|BBF79518.1\|81718_82405_-\|glutathione-S-transferase	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	1.85231e-52
AP018827.1\|BBF79512.1\|77796_78315_+\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase,-FabA-form	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.3114e-125
AP018827.1\|BBF79502.1\|64059_64665_-\|Smr-family-protein	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	3.87083e-29
AP018827.1\|BBF79501.1\|62543_63563_+\|fructokinase	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	1.89082e-109
AP018827.1\|BBF79516.1\|80939_81362_+\|acetylglutamate-kinase	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	6.44598e-42
AP018827.1\|BBF79519.1\|82495_83320_-\|hypothetical-protein	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	2.54649e-115
AP018827.1\|BBF79504.1\|66277_68929_-\|sensory-box-histidine-kinase/response-regulator	gnl\|CDD\|179385	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase.	8.14777e-11
AP018827.1\|BBF79513.1\|78350_79574_+\|3-oxoacyl-[acyl-carrier-protein]-synthase	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
AP018827.1\|BBF79503.1\|64788_66201_-\|hypothetical-protein	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	1.95155e-123
AP018827.1\|BBF79514.1\|79625_80444_+\|enoyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	8.39347e-130
AP018827.1\|BBF79510.1\|75879_76863_-\|glyoxylate-reductase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	5.09789e-158
AP018827.1\|BBF79506.1\|69596_70883_+\|integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.97791e-27
AP018827.1\|BBF79511.1\|76965_77652_+\|hypothetical-protein	gnl\|CDD\|226329	COG3807, COG3807, Uncharacterized protein conserved in bacteria [Function unknown].	7.72174e-43

>AP018827.1|BBF79509.1|73886_74021_+|hypothetical-protein
MLAYIAWKLGDLFKEVKSIRWMMNIDRNLNPRDGSELRSRNFEE
>AP018827.1|BBF79508.1|72390_72507_+|hypothetical-protein
MARMGLIRDSGLRGMGEGGCKAIKWVATTGETKGGEHV
>AP018827.1|BBF79507.1|71966_72170_+|hypothetical-protein
MHTIENAPGTACVRGGGGELRGYITSDSVILAARKALMGRLSRTAGLPPSIARLTVELALGGANGRT
>AP018827.1|BBF79506.1|69596_70883_+|integrase
MPKKSAFRITKEAVDALPADKDAVYWDRDVKGFGVRVKPGGQKSYLVQYRNREGRSRRLTLGQHGHITPKEAERLARAALGQVAGGADPVESGKQLKQELTVAALCAEYVEAVELGLRDPKRAVVFGKSGAPKKASTHQEDLYRINRHIIPHLGKRKVGAVTSADVRRFMDAVAQGRTATRAKDPATKKRGTVRTTGGSGVAARTVGLLGGIFSYAVDRGHLETNPCRGVKRPPDKRREVRLSAEQYALLGKALRASEVAGEVWQAVGVFRLIALTGCRLGEAQNLKWTEVDLPGQVLRLSDTKTGCSVRPIGSAVVALLNSLPREGDYVFPSPLDQNTPYGGLPGAWKRVLGRLNTDEEANLNGLTPHGLRHAYASTGGDLGLTEITISALLGHSSAGVTQRYIHFLDTALIAAANQVSREIEFMMA
>AP018827.1|BBF79505.1|69045_69234_-|hypothetical-protein
MTSANTRQLPFAIAFAVLSLITVALGALTMQQAGLSAGLWLRNPVVWLGVAELFAKSPTQSA
>AP018827.1|BBF79504.1|66277_68929_-|sensory-box-histidine-kinase/response-regulator
MLLESEADLIVVLGVLAALLLGAAIVAGLIAIIKTSQVRQFQDLLFKAERKIDQLERRMFNVLNAVPVALVETDATGKFIFANKTAHQLLGRKDNELIGLRFHSATWGITYPDGRVIPPDLLPIARTLRGQTVKGFQHLIVNHGSRTKVLVSVTSMPIMNTNGEVIGSTTALVEIETQTGEGVGDISGVWRGHWFTAAPVPFWGLDQNGTVLDLNPRVGHLLDTPRDQAMNANWAKVFVADADFQKAVDFLADLTPEDQGGRPASINLSLKDVRGQAHPVILTAWIVHTQDGEAQGITVAAIPTTQTLTVSETPALAAPVAPALSDEAQQALEDLQKAELARAALGVGVWSYDPVSDSIVEDEGMRRLIGREFDGGPTRITAEDQLRANEVFGDLMSGQSDTLDLDLTIPQPDGTLRYVSLKGQAQRVDGRRELFGVAIDVTHAKAAAAPAPLPVPEPVVIEDTAKIEALEADLAALGTARSEAEAERDALRAELEALKDAASRSETAEPGENPELEALRTELEALKAEPKSEPEESPLSVALEASLAEIETLKARAAELTALESELETLRQDYATLAQTAAAEAQPDTRDAEIEALKAEIAELQGLKALESELSALKDEKAELEAEFAALQAAPVPEAKPERHLSDIAGDLSPLHRQWKSDGTLTRLSTGWQALTGCGAPEFFGEGWLDSLHPDDQDRIHAELAVHLAQKTAGELSYRVKTPDGFAPLLERLSPVVTDGQFEGLLGVAFDLSAHLPPPPPPVVEAGPDRLEFLTMKARTGQLELEIAQLQLAKLELERQAERLDTALALSQRYETVGRLAGDVAADFSQMLNVMNAALDMIGRQADSPDLRRLSEAALAAGKRGERLTRQLLAFTTEAKEKA
>AP018827.1|BBF79503.1|64788_66201_-|hypothetical-protein
MTDSAPLTFGWEEWVGLPDLALPAIKAKVDTGARTSALHAVDIEVFGTPERPRVRFVVNPVPGRYDIEVACSADLKDQREITSSNGETEWRYVIETHISIDGVNHPIEVSLTNRANMAYRMLIGRQALESLGALVDPTAGQRLPVLSYDVYNRADAPKAVKRPLRLAVLTQDAGNYSIRALIRAAQNRDHVIEAIETSRCYMNINVTRPEVHYDGKPLPQFDAIIPRIGVPMTSYGLAVVRQFETTGAYCLNRSSAISASRDKLHALQVLARKGIPMPVTAFAKSPKDTDFVVQLVGGAPLVIKLTKGAQGRGVVLADTHLAAASVISAFRDLDAELLTQEFIREADGEDLRCLVIGSKVVAAMKRKAKIGDFRANLHQGGKALSVEITPEEADIAVKAARALGLQVAGVDILRSHSGPKVLEVNSSPGLQGIEKASGVDVADLIIRHVESKLRPVQHLPKQNPRAKRRD
>AP018827.1|BBF79502.1|64059_64665_-|Smr-family-protein
MKRFGLKDEDLKLWHLVTATVRPHALSKKKPAPAKPPFAQPEIETVTIKGLPEGQNTLSAPRIERPLPLVPFKIGEAVRPQSGFRLSEATSFSPDPIEPKRKRRISRERDPIEARLDLHGLNQIQAEQRLKAFVQQAWANDYRAVLVITGKGMAENGILKRNAPEWLSDPALAHIVAGISQAHARHGGSGALYVALKRRQG
>AP018827.1|BBF79501.1|62543_63563_+|fructokinase
MSSEYDVTAVGNAIVDVLAPASEAFIVSEGLPKGGMTLIDQHRALNLYGKMVARSEANTEDLTQESGGSAGNTIAGVASFGGKAAYIGKVAHDELGEVFSRDLKKSGVHFDVPFLHDDPTHTGRCLINVTEDGQRTMATFLGAAALVQPEDVDPQLIRASQITYLEGYLFDTPSGRAAFAKACEIAQSAGRKTAMTLSDSFVVDRWRTDLLAFIDQHIDLVFANESELLSLFQTEDFDKAARYLKSKADLAFVTRSERGSVALKADLSHDIPVYPVAEVVDTTGAGDQYAAGVMYGLTQGLHLETCGRLGALAAAEVISHYGPRPQVSYAQLAKQNGLI
>AP018827.1|BBF79500.1|61609_62479_-|iron-ABC-transporter,-ATP-binding-protein
MKKSLLILTPNPAHPSHHGRWPAVLEAYRAAFAAFEVEAQPWSEPLTRPYDLVLPLVAWGYHNAPDDFRRALAHIKAKGYRMHNPAEIVSWNVDKAYLRDLAEGGIRIVPTLFADSLTPETLSRARADFGQDTLVLKPRISAGAKKTLVWAGADVPEGAPEAEAMLQPFLSAIQSEGEWSLIFFGGDFSHAVLKTPKPGDFRSQPDYDAHLRVQTPPVAAVELAYQVLEYVGQTLLYARVDMVRNAAGDFCLMELELIEPDLYLKYEDAAPARLSHAVEHALGLCGHQH
>AP018827.1|BBF79510.1|75879_76863_-|glyoxylate-reductase
MNKKLKVVMTVKLPDGVETRFRELFNTTLWLTKDPMPRDKMIEAAQTAEVLVSSINDRIDAEFIDACGEQLKMIANFGVGYDHIDVAKAVEKGIIVTNTPGVLTEDTAEMTMGLIIAVARRFVEGAETVQRGEFSAWSPTFMMGRRIYGKRLGIVGMGRIGQALARRARAFGMQVHYHNRKPVSQRISDELEATYWDDLDQMLSRMDVVSINAPGGPHTFHLLDAERLAKLQPHAILVNTARGQIVDEEALAHLLRGNKIAGVGLDVYERLPGINPELFGLPNAVLLPHMASSTIEARTDMGDRVILNIKTLQDGHRPPDRVIPAML
>AP018827.1|BBF79511.1|76965_77652_+|hypothetical-protein
MSKTFPRPLNRLLLPMPTLFSLFFSVKSPHHRPCPRVKSGWARAAVLALSLGMVCGGVAPAAQAGSAEEESFNTPSKQPVPRWASLRSNEVYARSGPTKENKVLWTYRQKNLPVQIISETREWRMICDPDGGIAWVSRSMLKSQRSVVSMGTQKIDLLSAAKPTAKVKARLNPRALATLDKCKKGYCKVSVGNVDGWAPQDRLWGAQEGAACKRPDPFTRLGTPLGVR
>AP018827.1|BBF79512.1|77796_78315_+|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase,-FabA-form
MSDRPSSFDYEALLACSRGEMYGPGNAQLPAPPMLMMDRITQITQDGGAFNKGYIEAELDINPDLWFFACHFIGDPVMPGCLGLDAMWQLVGFFLGWSGNPGRGRALGVGDVKFTGQVTPSVKKVTYKIDMKRVMTGKLIMGIGEGVVLADDKPIYSASGLRVGLFDAKDLV
>AP018827.1|BBF79513.1|78350_79574_+|3-oxoacyl-[acyl-carrier-protein]-synthase
MRRVVITGLGIVSSIGTGADEVAASLRDAKSGIVAAPDYAELGFKCQVHAKPTIGDWTPLVDRRAARFLSDGLAYGHVSLEQAIRSAGLEESDISNERTGIIFGAGGPSTRTIVEAADTTREKKSPKRIGPFAVPKAMSSGPSAVLATWFKIRGINYSISSACATSVHCIGAAAEQIMLGRQDVMFAGGTEELDWTLSNLFDAMGAMSSNFNDTPSVASRAYDKNRDGFVIAGGAGAVVLEDYERAKARGANILAEIVGYCANSDGYDMVAPSGEGAERCMREALRQAGGRKIDYLNPHGTSTPVGDEREMGAVRNVFGEASPLISSTKSLTGHSLGAAGAQEVIYCLLMMQHGFAAKSAHIEELDPAFDGMPILRERRDGALETVMSNSFGFGGTNGSIILSQADL
>AP018827.1|BBF79514.1|79625_80444_+|enoyl-[acyl-carrier-protein]-reductase
MAEDGWKFPKGELMKGKKGLVMGVANDKSIAWGIASQLAAQGADMAFSYMGESLLRRVGPLAESIGVKHLIECDVTDDASMDAAFAKLKEIYGEIDFVIHSVAFANKNELQGSFVENTTREGFLLAMNVSAFSFVDVSRRAAELMPNGGSLVTLSYLGSERVIPNYNTMGVAKAALEASTRYIARDLGPKKIRVNAISAGAMRTLSLAGISGGRSLHAKSGQFSLLKEETSMEGVAGAALWLASDLGLSTTGEVVHVDAGFHVVGLPEDVEI
>AP018827.1|BBF79515.1|80766_80943_+|hypothetical-protein
MNREDVSAYANHALTVLREAVSEAIERKRRLGQYWVVWDGEKPVEVYPENAVDRPAAE
>AP018827.1|BBF79516.1|80939_81362_+|acetylglutamate-kinase
MSQTAFGPPPSLGDIEAVARDTLSKLPEPFAGYLRDVVLIVEDFPAEDLLADLGIEDPFELTGLYTGRPAETETFTGDLPPMIHLFRRPILDEWAETGVPLGDLVAHILIHEAGHHFGLSDDDMEWLEDELKNGSTSSVH
>AP018827.1|BBF79517.1|81482_81662_+|hypothetical-protein
MRTPDPFMAPQLSPDSRARPAPLKRAATFTEISIPPHSSGLHGFAQTVKRLMRRFCCGV
>AP018827.1|BBF79518.1|81718_82405_-|glutathione-S-transferase
MYDLYIANKNYSSWSLRPWVLLKTLGIPFTEHLHYFSTPIGENVQFKAFSPSSLVPALHDQGLTIWDSLAIAEYVYQAHPAVWPADREARAFARSAAAEMHSGFSVLRTICTMTCGLRVKLHTISPALQRNIDRLDALFSEGLSRFGGPFLAGDTFTAVDAFYCPVAFRVQTYGLRLSPPAQAYIERLLALPAMQDWYAAALAETAREPEHEAEVTEAGVVLADYRAV
>AP018827.1|BBF79519.1|82495_83320_-|hypothetical-protein
MTSQNPLPTLYIPHGGGPCFFMEWNPPHLWDRMGDYLRDIPRQVGQRPKAILVISAHWMTERFTVQTKAKPGMLFDYYGFPDHTYRLNYPAPGSPELAERVIALAAEAGIPVDRDATRDYDHGVFVPFLLMYPEADIPVVQLSIKSNWDPQAHIALGKALAPLRDEGVLIVASGMSFHDLKALIRLSLAHEPVNGSHHFNDWLNDTLTAHTGEAREALLRDWSKGAGARIAHPHEDHLVPLFVAAGAASDAKAVRTYDETLKPMNTAVSGFQFG

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Crispr_ID: AP018827_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018827_2

157710-157877

Unclear

Consensus_repeat	Method
GTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC	PILER-CR
GTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC	CRISPRCasFinder

2 spacers

cas2

The CRISPR arrays of AP018827_2

>merge|AP018827|2|157710-157877|PILER-CR,CRISPRCasFinder
GTTTCGGTTGGGCTCTGACGTCGTTTCTGCTAAGACCTAGTCGGGAGGGCGTTAAACTCCCAACTAGTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGACATCGGGCAACTGATCATTATGGCAAAACAGGTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC

>AP018827|2|1|157710-157877|PILER-CR
GTTTCGGTTGGGCTCTGACGTCGTTTCTGCTAAGAC	CTAGTCGGGAGGGCGTTAAACTCCCAACTA
GTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC	ATCGGGCAACTGATCATTATGGCAAAACAG
GTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC

>AP018827|2|2|157710-157877|CRISPRCasFinder
GTTTCGGTTGGGCTCTGACGTCGTTTCTGCTAAGAC	CTAGTCGGGAGGGCGTTAAACTCCCAACTA
GTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC	ATCGGGCAACTGATCATTATGGCAAAACAG
GTTGCGGTTGGGCTCCGACGTCGTTTCTGCTAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
AP018827.1\|BBF79595.1\|166933_167818_+\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
AP018827.1\|BBF79596.1\|167912_169190_+\|Xaa-Pro-dipeptidase	unknown	unknown	gnl\|CDD\|238624
AP018827.1\|BBF79578.1\|149894_150356_+\|non-specific-DNA-binding-protein-Dps	unknown	unknown	gnl\|CDD\|223854
AP018827.1\|BBF79581.1\|151326_151827_+\|acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|223532
AP018827.1\|BBF79589.1\|158719_158833_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79594.1\|165786_166833_+\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|377332
AP018827.1\|BBF79577.1\|148516_149632_-\|quinolinate-synthetase	unknown	unknown	gnl\|CDD\|236489
AP018827.1\|BBF79583.1\|153013_154219_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
AP018827.1\|BBF79587.1\|157949_158282_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
AP018827.1\|BBF79590.1\|159711_160944_+\|outer-membrane-protein-A-precursor	unknown	unknown	gnl\|CDD\|225439
AP018827.1\|BBF79591.1\|161145_162771_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
AP018827.1\|BBF79582.1\|151816_152872_-\|undecaprenyl-phosphate-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133464
AP018827.1\|BBF79585.1\|154938_155325_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79593.1\|165618_165795_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79580.1\|150905_151337_+\|hypothetical-protein-YaeJ	unknown	unknown	gnl\|CDD\|181730
AP018827.1\|BBF79584.1\|154507_154954_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79579.1\|150361_150874_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79592.1\|163144_165622_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
AP018827.1\|BBF79586.1\|155321_157247_+\|ParB-like-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
AP018827.1\|BBF79588.1\|158278_158530_-\|CRISPR-associated-protein-Cas1	unknown	unknown	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
AP018827.1\|BBF79596.1\|167912_169190_+\|Xaa-Pro-dipeptidase	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	6.14743e-125
AP018827.1\|BBF79578.1\|149894_150356_+\|non-specific-DNA-binding-protein-Dps	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	4.84345e-58
AP018827.1\|BBF79581.1\|151326_151827_+\|acetyltransferase,-GNAT-family	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.46508e-13
AP018827.1\|BBF79577.1\|148516_149632_-\|quinolinate-synthetase	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	2.06438e-160
AP018827.1\|BBF79583.1\|153013_154219_-\|aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
AP018827.1\|BBF79587.1\|157949_158282_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.1704e-20
AP018827.1\|BBF79586.1\|155321_157247_+\|ParB-like-nuclease-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	3.88797e-25
AP018827.1\|BBF79591.1\|161145_162771_-\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	3.27864e-31
AP018827.1\|BBF79582.1\|151816_152872_-\|undecaprenyl-phosphate-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133464	cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.	1.68819e-38
AP018827.1\|BBF79580.1\|150905_151337_+\|hypothetical-protein-YaeJ	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	1.45916e-60
AP018827.1\|BBF79594.1\|165786_166833_+\|agmatine-deiminase	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	1.53808e-145
AP018827.1\|BBF79588.1\|158278_158530_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.02027e-06
AP018827.1\|BBF79592.1\|163144_165622_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.37544e-40
AP018827.1\|BBF79590.1\|159711_160944_+\|outer-membrane-protein-A-precursor	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	9.81668e-33
AP018827.1\|BBF79595.1\|166933_167818_+\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0

>AP018827.1|BBF79586.1|155321_157247_+|ParB-like-nuclease-domain-containing-protein
MTDAKGNRTAFQYDNFNRQVRTSYPTASNGASTNSGDYEQIDYSGARVGSVRLRDGQVIGFHYDGLGRLSYKDNAVSETFTYNNFNQITSHTANSLTSNYSYNSLGWLKTDAQPLGTVTYDHDGFGRRTKMTYPGGFEVNYSYNDGDELTDINAGGAWLNFVYDNLGRRTQLNRSNGQTTSYGFDGSFRLNSVGFGSNTVSLGYNDADQIASRTNSNGAFNYNPGTVLITYGIDGLNRIATVNSANMSYDLRGNFTSDGASTFTYNTNNLMTSATQSGVMSHLTYDAENRLHSISKYDTTKFLYDGADIIAEYNGSNQLLRRYVHGPGMDEPLIWFEGSSTSDKRFFHADNQGSIIATTDSSGNTYATVYDEYGIRYASNETYAGRFSYTGQAYLPEIGMYYYKARMYNPIIGRFMQTDPIGYGAGLNWYNYVGSDPVNYTDPWGLQEEEKQDDCAPGETRGSDGVCATDVTVVGQRGRDLLSNDLGPLCAKIPAFCEYDVDILPIDPLVGETCEASTAGNKALGSPSYRQRVREMMKASLENWGGIVEYGFITDADTGLIGPLFTSGDRRKISNSAVRSPSGAPVAAVRSNFSNWVYTHSHPNNNPPSPLSSGDRKNAEFFGWTVIAVDKSFTVHCTRQR
>AP018827.1|BBF79585.1|154938_155325_+|hypothetical-protein
MARHLELSGADIIRRNMRFLVGLGLSAGLLTGLISLWPHWPGDMIVPFRLQLVGLAVAGLLLSLCLARRALMGFAAVVLMLHATPVALRLMQRPVLPATSDAGRPLSLVFSNATKSLASTTPMARWTM
>AP018827.1|BBF79584.1|154507_154954_+|hypothetical-protein
MPVASASGGITLLRDALSVSVAELETKAASGDARAQFSTSLVYQYGLQGTPADPVKATTYRQQALSAKGYMPITQYIAGLNGNPGRTAIINVPRYDVTAGEAQAAYRCAQAVARRVAPAVGAAACGAIEVYAELVSQWSGEESRWPVI
>AP018827.1|BBF79583.1|153013_154219_-|aspartate-aminotransferase
MTFVESDTLKRVKPSPTLAVTAKARELARQGKKVISLGAGEPDFDTPENICDAAIKAIKRGETRYTDVDGIPELKAAIVEKFKRENGLEYKTTQVSVSPGGKPVIYNALMASVNVGDEVIIPAPYWVSYPDMVLLAGGTPVFAVGDMSTGFKLKPETLEAAITPKTKWLILNSPSNPSGAAYTEAELKALGEVLKRHPQVWILTDDMYEHLTFDGFKYTTIAQVCPELYDRTLTMNGVSKAYSMTGWRIGYAAGPEPLIKAMSKIISQSTSNPCSIAQWAAVEALNGPQDFIPERAAVFQKRRDLVVAGLNACEGIHCPTPEGAFYVYPSIEGLIGKTAPSGKVIQTDEDFASELLQQETVAVVHGAAFGLSPFFRISYATSEAVLTEACERIQRFCASLK
>AP018827.1|BBF79582.1|151816_152872_-|undecaprenyl-phosphate-N-acetylglucosaminyl-1-phosphate-transferase
MWLLSPLACLSIVAIAAVLAALLAQLAIRGGPVDIPRDRGAHKAPTPTSGGLAVMAASGLAIAFGVMKLSVPGPQTGLWLFGFAALAGLSGAIDDVLDLPAKARLLFQIILCAGFANHYPVHELILAPGLTLAVPFPLGVLAATAWLVLGLNAINFMDGSNGLAIGTQAVCLLIYAGFVLAFGSQPVSMLGGVLLVFLATGGAFAGLLPFNLPLNRVFQGDAGSLFGGALVTGGALVLSTHEIASIWLGGFLLAPLLVDVLLTLLWRAQRNRNLFEAHKDHLYQQWLIHRDPDHGRLALKIWGLCALSCAIGTGARLIGITTGVELRFAALCLVVAALCYGWFRVRKTLTA
>AP018827.1|BBF79581.1|151326_151827_+|acetyltransferase,-GNAT-family
MTTEIRPATAADADAILTLYREVARLSGGLARTEAEITPDYITGNLTAALKRGVCLIAESDGRCVGEIHAYAPMPKQFAHVLSDLTVAVSPATQGQGVGRRLFEALIAHSRQQTHIRRIELLCREGNARGITLYESLGFVREGRLKGRVHLPDGTVEDDLFFGLTL
>AP018827.1|BBF79580.1|150905_151337_+|hypothetical-protein-YaeJ
MIFITPKISVDEAELSESFVRASGAGGQNVNKVSTAVELRFSIWENQTIPYEVKQRLIVLGGRRVTQDGVLVLFVQTHRTQDMNRKAARERFVELLQRAAAPPPPPRIKTKPTQGAVRRRLVAKSIRSGIKSGRQKPLGEDDD
>AP018827.1|BBF79579.1|150361_150874_+|hypothetical-protein
MFSDALNLNGVDWPLLQNGAVNLFKNLTYFVDTQTDLKTAGYEVGYVDCHSGIKAFCAQLSDILNWSEQFGYDEWSGNLDALDDAFCTYPFSESGKSVLAFEAFDQIVNEDAYFASGILDVIERSSRNHLLFSRRLIALVQTNDPGYSCENIGGRSANWNPKEWFQADRF
>AP018827.1|BBF79578.1|149894_150356_+|non-specific-DNA-binding-protein-Dps
MPKAAETPDTPVCLELSKVLADSYNLYLKTHGYHWNVRGPQFNSLHAMFMAQYTEMWTALDEIAERIRALGELAPMSGAAFGNLSSIKEGDATKSANEMLKELADGHKTLIATLKNALKVAEEASDDPTVDLLTVRLGSHEKHLWMISASLED
>AP018827.1|BBF79577.1|148516_149632_-|quinolinate-synthetase
MLHSKNPIVDEALGALAFTPDIEAETAEIYARLKGKVSPIEWQIQAPLIAAINRLKRETNAVVLAHNYMTPDIFHGVGDYVGDSLGLAREAAKSDAKIIVQGGVHFMAETSKILAPEKTVLIPDLRAGCSLASSLTGEQLRLIKQRYPGLPVVSYVNTTADVKAETDICCTSANAVQVVEWAAKEWGVDRVILVPDEFLARNVARQTNIGIIAYKGACEVHERFNAQDIADVRAAHPDAVVLGHPECPPDVIAACDFTGSTTAMADYVTQNKPKQVVLITECSMADNVTADAGDGVEFLRPCNLCPHMKRITLEGIYASLLTMTHEVTVDAAIIDKARLSVQRMIDMPPTTTPARYDMIRARHHVDVELIS
>AP018827.1|BBF79587.1|157949_158282_-|CRISPR-associated-protein-Cas2
MTHLSAYRIMWIMALFDLPVVTSAERKRAGKFRLFLLDQGFEMVQLSVYARFAFSREKAEAITRKIGKAVPAHGKVDILYFTDKQYAQIVSFRGQSESALPKNPEQLALF
>AP018827.1|BBF79588.1|158278_158530_-|CRISPR-associated-protein-Cas1
MEPFRPAVDMVAKTLWEAGDTELTPAVKRQLTRMLSLDYQTANGRTPLSVCLSRLTNSLAKAYLKEVDKLDLPRPLIPLRDEA
>AP018827.1|BBF79589.1|158719_158833_-|hypothetical-protein
MISLRPPILTDLSEPSAMRSYKNERPKPLALTASSMR
>AP018827.1|BBF79590.1|159711_160944_+|outer-membrane-protein-A-precursor
MKLNLLAGAALVALAMASGAAAQEAEGWYGAVDLGYNQKSEYGAKSANNMPDGSPFAYDVSTENDWAGFARLGYRYNPNWRVEFEGGYRPGDVDAARGFARVYGPAATFGTGTAPRDTALCTPGVTRTASTPCGSPVGSFDQTTFMANLIYDFIPESKFHPFVGLGIGLDRVKADFTGQYSVNPGGTGRNLTISGEDTVAAYQALAGFAWALSDRLNLDLTYRYLTTEEVNLNATSTTTALNPGSFSGKFDDQTLTVGLRWSFGAPPPPPPPPPPPPPPPPPPPPPPPPPPVVEEAVKYEAREFIVYFEFDQSTLTADAQAIVQQAADYAKAGNATRVVVVGHADTSGSAAYNIRLSERRAKTVADALAGLGVSGSILAVDWKGESAPAVATGDGVKEPLNRRSTIDIAF
>AP018827.1|BBF79591.1|161145_162771_-|hypothetical-protein
MSQHTAPAPLSAPARYVLWGLGLLFLLRVALLFSTYTNLYPDEAQYWLWSRQLDFGYYSKPPMIAWLIHLSTLGSDAEPFVRLFAPFLHLGAALCLWGAGQRLFNEATGLCAAIIYSLMPGVVLSSAVISTDAPLMFFLSATLYFYSVFLTTNAEKARLKAALGMGLAFGAAFLSKYACLYFLIGAAAHAVLVPSVRRSWNLRSLALFAGAFVVLMSPNLYWNATHGFQTVSHTADNANWHWGKLFNPTSLLKFWRDQLGVFGPVPVVLMLLGIAGLVRPRAGLLHREADAAQRSALIGLACLTLPPLIFVSVQALLSRANANWAASAYVPASLLVAAFVVTGFSVAIRSHRLWRPALGVGLAIQVAIMAIFMLGAVSETLTHTLGLGNTVKRARGWDTLTHAVIAKAQTEVRPTAIAVDNRNVYNALAYYGRDWFTANPDVPLKAWVREAHPKSQAETETPLTADTGQNVLIVSYVDGFIPDIRRDFAATGPGESLKIALDHKRTRDFTLFRAYGFQRAPRDPRTGHPLGSSLEAPDDDQ
>AP018827.1|BBF79592.1|163144_165622_+|TonB-dependent-receptor
MKMNKWIMAGTALTGLFASHGAFAQSTASQEVEKVTEVVVTGQRNVGSTKRERGTKAKTTIGQDYLSQSSSGQTFADALNLVPGYNFTNNDAYGSSGGEIMMRGLDSARISLAVDGIQLNDSGNYAIYTNQMIESELLCSASVQTGATDVDSISASATGGTVNVSTCNPETVMGGVVKVAVGQENHKSGFLRFDTGKFGPWGTTAYVAYTGAYTDTWTVETPDNLRLQKNQYNAMIHQNVGDNGSFISMALHWNENRNHFIGTQSKAQIATRGYGVSTSTLASVNPSDTGNIRIKSKWVLSDKLTLTVDPSFQYVMALGGSTGTLSESSPQLIGSRVGDTTVLKLSGTTRYFDTNGNNTLDTLSIYRPNITNTHRYGLQSGLIYRFTDTQLIRFNASFDRANHRQTGEATLLDANGAPIDLFAGKENTSLRIKTADGFHFRRRDRFSKANVDVFSIEYSGRFFDEKLFVSLGLRNQKLERELNQFCYTQVNTNGSINPYCSTQNWSSQKTTADGKYKVVTLQQQGTPSTIQYIAPYANSISFEKTMPNIGLTWNFENGGQVFATYAESLSSPRTDALYDVDYDAASNSVKIRNPNPETSETVEVGYRYTTANFNATATAFSSLDKDRLVEAFVQDDPTDVGYSAFTNIGKVKRNGYELSSNYRPVPNLTLNAGLTYTDTELQQDIPNGFRNGVQRLLPTKGKALTGMPKWMWTAGVDFDPTDKLSINLNAKYVGDRFYTFVNDEVAPHYVLWNASARYDLPFFKEGTYVQLNIVNLFDEQYLTGTGYQNTALGFIDNAGGTVSASTVFYQQGAPRTVSIALRTKF
>AP018827.1|BBF79593.1|165618_165795_-|hypothetical-protein
MAHAGPRKKAKLGLRPFYTASSGLTMPFRDDRSQNATQKKSGPPFPESRSCSSNRIRS
>AP018827.1|BBF79594.1|165786_166833_+|agmatine-deiminase
MSQNPNLSRIVPAEWEPHKAMWVGFPSHENLWQEDLIEAQAEVAALVRVLAEAGDEHVKLMVMGEAARKAAQSLLSDVKKVEIVDGRFGDIWFRDTGPIYVNVEDAQDRHAALPVAFLNNGWGGKYHLKYDDQVAAQVAEHDGYVPETQEFVLEGGSLEHDGFGTVLTTRQCLLNPNRNPDWTQSTAERALQDALGARKIIWLDDGLLNDHTDGHIDNLARFVAPGVVVCPVGYGADDPNADLYNAVAKTLSQQTDARGVKLQVVRIPSPGRTVDEDGEIIPASHMNFLIANDCVIVPVYNERPGEMAVEALQTLFAERQVFGLPSNAILTGGGSFHCISQQVPLIKA
>AP018827.1|BBF79595.1|166933_167818_+|N-carbamoylputrescine-amidase
MTRIVSVAALQTAYGPDMAANIAKTEALVREAAAKGAQIILPSELFQGEYFCVSQEERWFATAFPWRSHPCVLAMQKLAAELNVVIPTSIYEKEGPHYFNSLVMIDAGGELLGVYRKSHIPDGPGYQEKYYFRPGDTGFKVWDTRFARVGVGICWDQWYPEAARAMALLGAEILFYPTAIGSEPHDAELDTAAPWQRVMQGHAVANVIPVVASNRIGTESLISPQNGCGQTFYGHSFIANHRGDKVVEYGKGEEGVLVAEFDLDYLNTHRAAWGFFRDRRTDLYGALASPRPVA
>AP018827.1|BBF79596.1|167912_169190_+|Xaa-Pro-dipeptidase
MKMRKAGVAWAVMMLMAGAAQAATVAVKADRLIEVETGKVIEQPLVIVTDGRITAVGSALTMKPPAGADYVDLPGVTLLPGLIDMHVHLDNSPEYGGYSGLSHTDRFWAFVAAANAEKTLRAGFTTVRNVGAGDYNDIGLREAIDEGVLPGPRIVAAGLSFGATGGHCDSTWLPPSFDAKNPLNADSPWEARKSVRTLKKYGADVIKICATSGVFSRGASVGAQQLTFEEMAAVADEAHMAGMKVAAHAHGADGIKMALRAGVDTIEHASLVDDEGIRLAKEKGAYFSMDIYNTDYTQSEGQRNGVAEESLRKDREIAELQRQNYGKALKAGVKMVYGTDAGIYPHGDNARQFAVMVRYGATPLQAIQSATVIAAEALGRSEDVGSLKPGHYGDMVGVVGNPLKDVTLLERPVFVMKAGDVITKP

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Crispr_ID: AP018827_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018827_3

268261-268381

Orphan

Consensus_repeat	Method
GCGAGAGGACACCATTCTCATGCGGGACCCGTTTGCGGACTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018827_3

>merge|AP018827|3|268261-268381|CRISPRCasFinder
GCGAGAGGACACCATTCTCATGCGGGACCCGTTTGCGGACTGACGGTCGAGTGGTGGCCTCCGGAAACTAAAAAAGTCGCGAGAGGACACCATTCTCATGCGGGACCCGTTTGCGGACTGA

>AP018827|3|3|268261-268381|CRISPRCasFinder
GCGAGAGGACACCATTCTCATGCGGGACCCGTTTGCGGACTGA	CGGTCGAGTGGTGGCCTCCGGAAACTAAAAAAGTC
GCGAGAGGACACCATTCTCATGCGGGACCCGTTTGCGGACTGA

Protein	Signature genes	Signature genes Name	Protein_function
AP018827.1\|BBF79682.1\|260606_260957_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79691.1\|265753_265906_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79688.1\|263181_264360_+\|phosphoserine-aminotransferase	unknown	unknown	gnl\|CDD\|235103
AP018827.1\|BBF79695.1\|270416_272102_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133150
AP018827.1\|BBF79702.1\|278335_278797_+\|iron-sulfur-cluster-assembly-scaffold-protein-IscU	unknown	unknown	gnl\|CDD\|223892
AP018827.1\|BBF79687.1\|263006_263183_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79693.1\|268508_269309_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
AP018827.1\|BBF79699.1\|275391_276072_-\|GTP-cyclohydrolase-I-type-1	unknown	unknown	gnl\|CDD\|236472
AP018827.1\|BBF79684.1\|261322_261562_-\|protein-of-unknown-function-DUF1653	unknown	unknown	gnl\|CDD\|377930
AP018827.1\|BBF79700.1\|276289_277759_+\|cysteinyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234705
AP018827.1\|BBF79690.1\|265102_265717_+\|transposase	unknown	unknown	gnl\|CDD\|372298
AP018827.1\|BBF79694.1\|269389_270298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133150
AP018827.1\|BBF79683.1\|260957_261320_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79697.1\|273285_274290_-\|ribosomal-large-subunit-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|161659
AP018827.1\|BBF79686.1\|262544_262955_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79685.1\|261639_262419_+\|hydroxymethylpyrimidine-phosphate-kinase-ThiD	unknown	unknown	gnl\|CDD\|369938
AP018827.1\|BBF79689.1\|264364_264637_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF79701.1\|277762_278200_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176864
AP018827.1\|BBF79698.1\|274707_275145_-\|biopolymer-transport-protein-ExbD	unknown	unknown	gnl\|CDD\|223917
AP018827.1\|BBF79696.1\|272179_273214_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838

Protein	Function_ID	Function_description	E-value
AP018827.1\|BBF79684.1\|261322_261562_-\|protein-of-unknown-function-DUF1653	gnl\|CDD\|377930	pfam07866, DUF1653, Protein of unknown function (DUF1653). This is a family of hypothetical bacterial proteins of unknown function.	6.09603e-25
AP018827.1\|BBF79688.1\|263181_264360_+\|phosphoserine-aminotransferase	gnl\|CDD\|235103	PRK03080, PRK03080, phosphoserine transaminase.	0
AP018827.1\|BBF79695.1\|270416_272102_+\|hypothetical-protein	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	5.12953e-11
AP018827.1\|BBF79702.1\|278335_278797_+\|iron-sulfur-cluster-assembly-scaffold-protein-IscU	gnl\|CDD\|223892	COG0822, IscU, NifU homolog involved in Fe-S cluster formation [Energy production and conversion].	1.11746e-33
AP018827.1\|BBF79696.1\|272179_273214_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
AP018827.1\|BBF79693.1\|268508_269309_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	4.46909e-09
AP018827.1\|BBF79699.1\|275391_276072_-\|GTP-cyclohydrolase-I-type-1	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	7.877e-108
AP018827.1\|BBF79700.1\|276289_277759_+\|cysteinyl-tRNA-synthetase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
AP018827.1\|BBF79690.1\|265102_265717_+\|transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	2.50433e-34
AP018827.1\|BBF79694.1\|269389_270298_+\|hypothetical-protein	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	4.83262e-13
AP018827.1\|BBF79697.1\|273285_274290_-\|ribosomal-large-subunit-pseudouridine-synthase-D	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	4.18381e-109
AP018827.1\|BBF79685.1\|261639_262419_+\|hydroxymethylpyrimidine-phosphate-kinase-ThiD	gnl\|CDD\|369938	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes.	1.07318e-113
AP018827.1\|BBF79701.1\|277762_278200_+\|hypothetical-protein	gnl\|CDD\|176864	cd07822, SRPBCC_4, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	8.89888e-26
AP018827.1\|BBF79698.1\|274707_275145_-\|biopolymer-transport-protein-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.9934e-38

>AP018827.1|BBF79691.1|265753_265906_-|hypothetical-protein
MTEKVKDSKEFSEAEIAARRDDVVRRMIGTAPKDHPKKTAKGRVGRPIAS
>AP018827.1|BBF79690.1|265102_265717_+|transposase
MAHRIREAMLANDETPMGGDGGVVEADETFFGRDPEAKESRMAIRSMNKIVTLLDRNSGKTRSVVVKEITVKSVTEILNANVSEKANLVTDEAHHYKAPGKTFSSHKSVNHAQKEYVNKEDKTITTNQIEGFFGIFKRGMRGIYQHCKSHHLRRYLAEFDFRYSNREALGCDDTERTNRAVMGVVGRRLMYQRPERQQAINALV
>AP018827.1|BBF79689.1|264364_264637_-|hypothetical-protein
MWTFLTIVAGVFVTIGLGGLIWGVTGRTEARRKQGLRMLQTGMAAGGTCLLLKGFSGDTESIIYGAVLLVFGTAVTGIGPKADKGGKPEA
>AP018827.1|BBF79688.1|263181_264360_+|phosphoserine-aminotransferase
MSAKPATIPERPWFSSGPTAKRPGWTPEALSGAPVGRSNRSKVTVGRIRQALDMTREILRLPADYQVFMVPGSDTGAFEAAMWNLLGARKVQLLAFENFGQLWADDATKHLKLDAEVLSAPYGELPDLTQIDPQADLVFPWNGTTSGVRVPNSDFLNGHAVADSGLVLCDATSAAFCMDLPWEKLDVATFSFQKALGGEAGIGVLILSPKAVERLNSFDSGRAIPKVLRLKKGNAADAAILGGDAINTFSFLVIEDYLDALRWAQREGGLDGLIQRCNEAAGALFDWVEKTPWIDFVAVDQATRSTTSVCLKFVDPAIQALPAEAQAKLAARVGSLLELEGVAFDITGYRAAPPGLRVWCGCTVEAEDVEALLPWLEWAYAAAVAELGLVAA
>AP018827.1|BBF79687.1|263006_263183_-|hypothetical-protein
MVWPSSWVIVSPGGAPGDLRKQAAFAAKSAQVQAEIDGANPEPKMNRTVQLRFEWRLL
>AP018827.1|BBF79686.1|262544_262955_-|hypothetical-protein
MTKLKTIAAAAVAIAGLTAITPAFAAGQYDRYDRYDRYDRYDRREDVRDYRDNRVDARIDRLEDRLDMGRRSGRLTRSEYGRLSSELNGIERLSNQYERSGRGIDRQEMANLSYRLDRFEQKLHWERNDRDTAWRR
>AP018827.1|BBF79685.1|261639_262419_+|hydroxymethylpyrimidine-phosphate-kinase-ThiD
MRRVLIIAGSDPSGGAGIQADLKAVTCLGGYAMTAITALTVQNTLGVTDVMPVPEALITAQAEACLSDIGADAVKTGMLGTTSVVETVAALLDKAGVFAVVDPVMVAKGGHPLLPDEAIDAIRTLLIPRAGLLTPNAPEAAVLTGIEVVDEASQQRAGEALLNMGAKAVLMKGGHIDGPEVVDWLLWADDARRYVSERIETRHTHGTGCTLASACAVLAGPDRSLGDSVDLARDYVMGAIITAPNLGGGHGPLRHNWVL
>AP018827.1|BBF79684.1|261322_261562_-|protein-of-unknown-function-DUF1653
MTRPITDYPSALATGLYRHYKGKDYVVYGSVTHSETEEVLVLYAPVTQADPARLWVRPLAMFSESVDSDGEIVPRFRKL
>AP018827.1|BBF79683.1|260957_261320_-|hypothetical-protein
MNENTDDSRWNELVPEAFAEASDPMVRVLLGKMLVVRLNQIGTHDELLSFELIGGRVIRANRKEGLVLSLVGTRQGEDFFLPLVPEAYLMLDPGDYALTCGTVIRNPDFSAAFDIYAQIN
>AP018827.1|BBF79682.1|260606_260957_+|hypothetical-protein
MMKRVLTKKPQFSKTVLPDRQKRNLKFSHAPQEVEVETPGPHILTGPVEMEVPAYEWASAEDTVPPAVIAQQSRSLFQWIVAIVLPVAALGVIALSVVALAQAGGYDADFIASRFR
>AP018827.1|BBF79693.1|268508_269309_+|response-regulator
MYGQNPATAQKLRATLKLVLLVEANPNYARMLSDMLRMLGAEQISHYRDHEEALDKAPGLLYTLIVCSHQAPECDALAFTKGLRRSNASCRKSPIITIAPEITMSLLNDIRDSGADEFMRKPFTWGDLQKRVEHVALKARPWIEAVGYVGPDRRRFNSGDYTGPRKRAADNKDQKTAQIEQAVRILKAAFEQYNSDPLQARRAMFAQLEVLVPACKTIASQSFHNDVRTILTQLREEWPDLKQIRPAILSLAAFMKIEDRHPSNAA
>AP018827.1|BBF79694.1|269389_270298_+|hypothetical-protein
MITRRHLCAGSAAAGLGLWAGHAAAQAKIIRVPLTLSSSKKPIVEVTLNGKGPYRFILDTGASHTVIRASLASELGLAVAGQGRNRSLKGTEYTTRYIVSDVTVGGQLGLHDWEVFASKGFEAAEYDGLLSADLLTRLPCQLDQTGGEIRYYLGGDMPLEGFAPLDSYYKRDITGGADKVHIRLRFAGHELDCLLDTGASRPLYIRGDFVRKHGLWEKYPLLNESALTGVNGQQVKVRHVEVRDLQIGGIAVPRLLVALGDPHDRAAFGEEGDRAEGIVGAPFLSGFVLAFTAQRSLQVRRV
>AP018827.1|BBF79695.1|270416_272102_+|hypothetical-protein
MVRVPFTRSKSLMPVVAVTLNGKGPYQFVIDTGASATIVRQSLVKELGLRRNGEARGSSLSGTEVLSRHVATEVVIGGKLRVGELSVYASEGFEKQGFDGLLTANILTRLPCQLDYRAGEVRYYLDATQPMPLDGFGEIHASYITERGIDADKITVSIGFAGHSIDCLMDTGAGSALMLRGDYVRDYNLWDKYPLISEGQLRGVNGKALKTRLVEVKDIQVAGLWVPRMAVALGDPYDREGYNVRAPFQGILGAPFLSAFQLAFQPKSAVHIKASGGFAALAPPEKHVSNLPQTTPDRPVIPFRLGEDRRFNFVAEIDGKPLTGLLNLGDGTSSIGAETAAKFGLSKLAGGYDGAALSFGGVRRPGLTLRKARQPKQDLYLGADFVQMTPCRLDLDNKYMMCYLKGAPETTGYDRLPAQWLSDGTLMISGSLMDKPMRFRLDTGWGYGLILSSEAVKAHDLWDAFPKAENRLSGDGKGGMKKIRYTGAPRLDFGPYRIDPAPLTLNDPTGGGEEGYKGVDGVIGIGVLWRFNMIFVHDEVWFKPNQRFGYSPTSLPSKPAE
>AP018827.1|BBF79696.1|272179_273214_-|RNA-polymerase-sigma-factor-RpoH
MEKEDKSLSYTRSHRLSSQGDAPMPDTNSGSNSGPFDGSEGDATMSTSSLTSNALSMPNPSVLSPDGGLNRYLSEIRKFPMLAKDEEFMLAKRWAEHADPKAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFDPDKGFRLATYAMWWIKAAIQEYVLRSWSLVKMGTTAAQKKLFFNLRKVKSEISALEDGDMRHEQVAQIATKLGVSEDDVISMNRRMSSPDSSLNAPLRASEGDSEWQDWLADDSTPSQETVLADSEEYKLRMSLLEEAMGELNERERAILTARRLQENPTTLEDLADRFGVSRERVRQIEVRAFEKLQKAMMASAEG
>AP018827.1|BBF79697.1|273285_274290_-|ribosomal-large-subunit-pseudouridine-synthase-D
MTPDDDIDDDLPLASDGETHDLVLTAEMAGDRLDRALLPLLPDLSRARLQALISDGHLSHDGQALSDGKHKARAGLYRLFVPAPVSAIPEAQNLPLEVLYEDAHLIVVNKPAGMAAHPAPGTPDGTLVNALLFHCGESLSGIGGVLRPGIVHRLDKDTSGVMVAAKSDAAHRGLSDLFSRHDIDRAYEALVRGAPKIASGTVTTRIGRSPHDRKKMAVLKSGGREAITHYRTLDSFGGEKPVAARVRCTLETGRTHQIRVHMAYLGCPCLGDPVYGSGAPHKAVAEALKTRSFARQALHAAHLGFVHPITGARLAFEAPLPADMAELLSALKSL
>AP018827.1|BBF79698.1|274707_275145_-|biopolymer-transport-protein-ExbD
MGAKLGGGGGSRYNVEQNSEINVTPFVDIMLVLLIIFMVSAPMATVSIKLDMPPPVPNLTQQEKPKDPVFISIQGTDDIYIGAKKTSLATLPADLAVALESSNPTEERVLVRGDADIEYNDFMSVLNTLQDNGYFKVALINEDLS
>AP018827.1|BBF79699.1|275391_276072_-|GTP-cyclohydrolase-I-type-1
MDSLDPNSRPNSEDPLTQALAQNLAQTRSKGFSEILNVERPSKEEAMAAVRTLLAWAGDDPTREGLIDTPKRVVEAYDEWFSGYQADPAKELSRTFEDVQGYDDMVMLRHIDVESHCEHHMASFLGKAYVAYMPTAKVVGISKIARVVEIFSKRLQTQETLTKQIADAIEQSLAPLGVAVLIDAEHQCMTTRGVHHKNVTTVTTRFTGVFKTDLALQDRFMRFCQA
>AP018827.1|BBF79700.1|276289_277759_+|cysteinyl-tRNA-synthetase
MKLRLSDTLKRQKVDFVPKNPQRVTMYVCGPTVYNYAHIGNARPVVVFDVLFRLLRHLYGEEAVIYARNITDVDDKINQKALAEGVDIDVITSKFADIYNADMRALNALEPTIQPRVTQNMNAIVAQIEALIRNGHAYAAEGHVLFDVESYKAYGALSNRSLDDMIAGARVEVAPYKKNPQDFVLWKPSKPGEPKWPSPWGEGRPGWHIECSAMIEANLGLPIDIHGGGHDLIFPHHENEIAQGVCAQHGHSHQEESYARYWMHNGFLTMDAEKMSKSLGNVLLVHDLIKEFPGEVIRLALLSAHYRAPLDWNNDLLVQTRKTLDRLYGTLREAKRVIEAHPLPDGWEIKRHTLDGKYVEPRLDRMVDILCDDINTPQAIADLFMLRDMLRGEFEASPLEERGFHTKKYMDLMVNAGALLGILQTDPEEWFKGGADDDLSAKVEALLEARKTARAEKNWAEADRIRNELTALNVEVMDGPAGATWKLKA
>AP018827.1|BBF79701.1|277762_278200_+|hypothetical-protein
MALKVEKRIGIQTPVDTVYEILQDIEGWVQWSPIHKEAKGKLGFGAPVRFMEHYEGLGDWEINGFVSDWSPLSHIHIGVPKKFYEGSLIRFYELNILSDTACDFAIGAQFSGFLSEREGKKYRSYLREGFAKFAEALKAKAEGTI
>AP018827.1|BBF79702.1|278335_278797_+|iron-sulfur-cluster-assembly-scaffold-protein-IscU
MIDELYSREILRRATQLAHVGRLEAPDGAADRTARLCGSTIHVEVKLADGVITDFAQEVEACALGQAAAAILSQSVIGAPITEVVAARDAMKAMLKGGEFAYPERFADFAILQSVKDFPARHASTLLALEATVEAIRGKSPCDKNASEMVEGD

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Crispr_ID: AP018827_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018827_4

1942124-1942262

Orphan

Consensus_repeat	Method
CGCGCTCAAAGAGCGAAGCGTTAGCGCAACAAAAAAGCGGCGACCTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018827_4

>merge|AP018827|4|1942124-1942262|CRISPRCasFinder
CGCGCTCAAAGAGCGAAGCGTTAGCGCAACAAAAAAGCGGCGACCTAAGCCTTACGTTTGAAAGGTACTTTAAGCGTCAGATAGGTCGCTCGCGCTCAAAGAGCGAAGCGTTAGCGCAACAAAAAAGCGGCGACCTAAG

>AP018827|4|4|1942124-1942262|CRISPRCasFinder
CGCGCTCAAAGAGCGAAGCGTTAGCGCAACAAAAAAGCGGCGACCTAAG	CCTTACGTTTGAAAGGTACTTTAAGCGTCAGATAGGTCGCT
CGCGCTCAAAGAGCGAAGCGTTAGCGCAACAAAAAAGCGGCGACCTAAG

Protein	Signature genes	Signature genes Name	Protein_function
AP018827.1\|BBF81181.1\|1932300_1933014_+\|tRNA-(guanine46-N7-)-methyltransferase	unknown	unknown	gnl\|CDD\|234649
AP018827.1\|BBF81197.1\|1950351_1951026_+\|pentapeptide-repeat-protein	unknown	unknown	gnl\|CDD\|224276
AP018827.1\|BBF81196.1\|1948924_1950136_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239819
AP018827.1\|BBF81185.1\|1936204_1936933_+\|predicted-nucleic-acid-binding-protein	unknown	unknown	gnl\|CDD\|236401
AP018827.1\|BBF81180.1\|1931065_1932238_+\|S-adenosylmethionine-synthetase	unknown	unknown	gnl\|CDD\|235374
AP018827.1\|BBF81188.1\|1940470_1941349_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
AP018827.1\|BBF81182.1\|1933118_1933739_+\|putative-membrane-protein	unknown	unknown	unknown
AP018827.1\|BBF81183.1\|1933902_1934571_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234627
AP018827.1\|BBF81189.1\|1941498_1942095_+\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF81187.1\|1937096_1940312_+\|translation-initiation-factor-2	unknown	unknown	gnl\|CDD\|235401
AP018827.1\|BBF81186.1\|1936943_1937078_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF81198.1\|1951187_1953413_+\|TonB-dependent-receptor-domain-protein	unknown	unknown	gnl\|CDD\|379720
AP018827.1\|BBF81192.1\|1944072_1945026_+\|tRNA-pseudouridine-synthase-B	unknown	unknown	gnl\|CDD\|235442
AP018827.1\|BBF81193.1\|1945059_1945329_+\|SSU-ribosomal-protein-S15p	unknown	unknown	gnl\|CDD\|180170
AP018827.1\|BBF81184.1\|1934586_1936227_+\|transcription-termination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
AP018827.1\|BBF81200.1\|1954738_1955167_-\|LSU-ribosomal-protein-L19p	unknown	unknown	gnl\|CDD\|235418
AP018827.1\|BBF81194.1\|1945674_1947927_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
AP018827.1\|BBF81195.1\|1948100_1948265_-\|hypothetical-protein	unknown	unknown	unknown
AP018827.1\|BBF81191.1\|1943598_1944069_+\|ribosome-binding-factor-A	unknown	unknown	gnl\|CDD\|234787
AP018827.1\|BBF81199.1\|1953458_1954589_-\|PQQ-dependent-oxidoreductase,-gdhB-family	unknown	unknown	gnl\|CDD\|369642

Protein	Function_ID	Function_description	E-value
AP018827.1\|BBF81181.1\|1932300_1933014_+\|tRNA-(guanine46-N7-)-methyltransferase	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	5.66327e-75
AP018827.1\|BBF81197.1\|1950351_1951026_+\|pentapeptide-repeat-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.42175e-22
AP018827.1\|BBF81196.1\|1948924_1950136_-\|hypothetical-protein	gnl\|CDD\|239819	cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.	1.33035e-58
AP018827.1\|BBF81185.1\|1936204_1936933_+\|predicted-nucleic-acid-binding-protein	gnl\|CDD\|236401	PRK09190, PRK09190, RNA-binding protein.	9.67311e-71
AP018827.1\|BBF81188.1\|1940470_1941349_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.86928e-171
AP018827.1\|BBF81183.1\|1933902_1934571_+\|hypothetical-protein	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.28937e-45
AP018827.1\|BBF81198.1\|1951187_1953413_+\|TonB-dependent-receptor-domain-protein	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	2.74372e-66
AP018827.1\|BBF81187.1\|1937096_1940312_+\|translation-initiation-factor-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
AP018827.1\|BBF81180.1\|1931065_1932238_+\|S-adenosylmethionine-synthetase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
AP018827.1\|BBF81192.1\|1944072_1945026_+\|tRNA-pseudouridine-synthase-B	gnl\|CDD\|235442	PRK05389, truB, tRNA pseudouridine synthase B; Provisional.	4.34145e-156
AP018827.1\|BBF81193.1\|1945059_1945329_+\|SSU-ribosomal-protein-S15p	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	4.94241e-51
AP018827.1\|BBF81184.1\|1934586_1936227_+\|transcription-termination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
AP018827.1\|BBF81200.1\|1954738_1955167_-\|LSU-ribosomal-protein-L19p	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.18626e-67
AP018827.1\|BBF81194.1\|1945674_1947927_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
AP018827.1\|BBF81199.1\|1953458_1954589_-\|PQQ-dependent-oxidoreductase,-gdhB-family	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	1.9291e-176
AP018827.1\|BBF81191.1\|1943598_1944069_+\|ribosome-binding-factor-A	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.32341e-40

>AP018827.1|BBF81189.1|1941498_1942095_+|hypothetical-protein
MGRLSDGALYLTQRGLARLCGVQNAHIGTISRDWDSDKPRIRAIKTRLSDMNEERAAAHSVLTYQGRRQYCYDVAVCQAILSYYAHDAGRHVQDEAAAHVYDGAGLNAYIAHALEGFVAPVETPPIRFQPVAETPVDEADIVVGYEVNDAISRMVMAYYQLSFAMAQAYVNWLRTLMQAASWNRLGLYVPLNAFISRG
>AP018827.1|BBF81188.1|1940470_1941349_+|formyltetrahydrofolate-deformylase
MPDTTFFDPSHYVLIIKCPDTRGIVAAVSGYLNDNDISIVESNQFNDSQGDMFYVRVVFKQAGARMPPMSILREGFKPIAHRFSMEWDIHNLSVRPRVIIAVSKFGHCLYELLHRWRSGLLPVEIAAVVSNHEDMRSFVEWNGLPYVHLPITKDTKAEQEAQFLSLIETHQADLVVLARYMQILSDNFSRRLEGRCINIHHSFLPSFKGAKPYHQAHQRGVKIIGATAHYVTSDLDEGPIIEQDVQRVHHGLTPEQLVAIGQDIEARVLARAVTWHAERRVIINGSKTIVFS
>AP018827.1|BBF81187.1|1937096_1940312_+|translation-initiation-factor-2
MSDPKDDKPEAPKGDNTRAPLSLKPRVGGNVSTGTVKQSFSHGRSKTVVVETKRRIGTPPQGAPSGGAQGTGGAPRAGGENLARPRPAAPQGAPSAPRPAPSGGNAGGLRQDELERRARVLEQARVDQERREAEARRQAEQRAREEAARRAAAAEAAPKSEAPAPAPAPSEPAPQAPAPAQAEAPRRSPIEEALSRPAQRAPREDRRDGFRDDRAPRSDRPQGDRPQGQYGDRPRGDRPQGDRPQGQYGDRPRGDRPQGDRPPFNRDGNRPQGDRPQGQYGDRPRDGNRGDRPQGDRPPFNRDGNRPQGDRPNYGERTPRGDRPQGDRPPFNRDGNRPQGDRGPRDPNRPQGDRGPRPAGETVRYSANSPRPPRGPAGVAPNAPAVSEVDRIRSSRGSPAGKPGDVRARTGDDDDRGRRGGKAGAPTKAVSQTRGEPKRREGRLTLQAVVGDDEGAADRMRSLASVRRAREREREKRKGVTTEQARVSRDVVIPDVITVQELSNRMAVRAVDIIKMLMKQGMMLKINDVIDSDTAELVATEFGHNVKRVSEADVLEGFIDAADHDDDTVVRPPVVAVMGHVDHGKTSLLDALRKEDVAAGEAGGITQHIGAYQIKVPSGERITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTIEAINHARAAKTPIIVAVNKMDKHEANPQRVINELLQHEVVVEALGGETQIVEVSAKTGMGLDNLVEAILLQAEVLDLRANPDRTAEGVVIEAKLDKGRGPVATVLVKRGTLKRGDIIVAGGAWGRVRALIDERNAQLPEAGPSQPVEILGLDQAPDPGEAFAVVENDARAREITEYRQRVKREKMVAPVGVSLSDMMSKLKDNKVKELQLIVKADVQGSAEAIIGSLEKVGNEEVRARIIHSGAGGITESDVQLAKGSNSPIIGFNVRASKQARDLAEREGVEIRYYAIIYDLIDDIKGVLSGMLAPIQRETFLGNAEVLEVFDITKVGKVAGCRVTEGRVEKGARVRILRDDVVIQEMGVLTTLKRFKDEVNSVVVGQECGMSFGPFQDIKKGDFIECFTVEEIKRTL
>AP018827.1|BBF81186.1|1936943_1937078_-|hypothetical-protein
MMKPAFRLRFGQSLFGLSDRAVINATYSLDTSLWPRSDREKITP
>AP018827.1|BBF81185.1|1936204_1936933_+|predicted-nucleic-acid-binding-protein
MTPSLNNETLIDLNDDLAEAGDTPSQTVSVRVTHRRDVASHQSVPRDGLIRFVVGPDGFVVPDLKETLPGRGLWLKADADSLALAIKKNLFSRAAKRAVKTPEGLDTLVPALIRRRLLEQLGLARREGNLVTGFEKVATALKLGKTAAHAAGRAAWLIEASDGAEDGRSKLLNLSNGQTPSVGLCGLFSNDELSLALGLENVIHAALIEGRRAAAFSREAERLGGFEALFPAQWRERPFNSN
>AP018827.1|BBF81184.1|1934586_1936227_+|transcription-termination-protein-NusA
MSFTGISANRQELLQIADAVAREKQIDKSVVLASIEEAVQKAARSRYGADHDIRVRVDPRTGEMTITRYVTVVPDEELENEYAQRGLTEALREDKEAFVGKTYEEVLPPFELGRVQSQMARQVVTHKVREAERERQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVNDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIKSVARDPGSRAKMAVLSNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIQWSPDEATFIVNALAPAEVSKVVLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQVDIITESQDSERRQKEFAERTALFQEALDADEVIAQLLVTEGFSTVEDLAYVDQMEIAAIEGFDEDTAAELQARARDYLERFEAEQNAKRVELGVEDEVLNVPGITLAMAVALGEAGVKTVEDLADLATDEVRGGFEQRGAEKVRVPGALESFSLSVADAEALILNARIAAGWIEAPEPEEAYEESEESYEEEGANDAIPEQ
>AP018827.1|BBF81183.1|1933902_1934571_+|hypothetical-protein
MRAKTTEDRKLIEAFDPIAEALGLDIVRVRLMGSNKPGGARRLQIMAERKTDGDITVNQCARLSRALSAWLEESDPITGEYILEVSSPGIDRPLTRLKDFDTYSGLEARLELDRLAEGRKRFRGILNGTEDGEYVAIDLEGEEDTAMIPFDWIIDAKLVLNDELLKIGAEKAALRREQGEDDEEEDEDLDFGDDADAEFDDEDFDDADDDFGDDDDDKLTKN
>AP018827.1|BBF81182.1|1933118_1933739_+|putative-membrane-protein
MESLHKVSAGFVFAFLCLHMANHFVGLQGLDTHIAFMAVARMVYRHPVVEMVVLLAFLVQILTGWALAREIWAKKKDFVHQLQAASGTYIAFFAITHVAFIFYVRQLLTVDSDIYLIVAGLMQSGWMYALIPYYGLAIFALFVHMGCILFDIFKKTLRPVSWGLLVATVGVGGYATWLLMMFYTGHTAALHVPAEYFDLYPLIRMK
>AP018827.1|BBF81181.1|1932300_1933014_+|tRNA-(guanine46-N7-)-methyltransferase
MSDETPPAISPSWGPMRSFGRIKSRTLKPRQADLFDTLLPTIEVNDALIAQLAAGDLGDYSELWLEIGFGGGEHLAAQAERNPQALILGFEPFLNGVGSLLRHVDERGLNNVRLMPGDARPVIDRLNAASVDKVFILFPDPWPKARHHKRRFIQTETLDALARVMKDGARLRFATDWADYADWTLERATAHAAFDWPAQSQAEWNTPPADHVTTRYEEKKLGDCAPVFLDFYRHARN
>AP018827.1|BBF81180.1|1931065_1932238_+|S-adenosylmethionine-synthetase
MRPSYIFTSESVSEGHPDKVADRVSDVVVDAFLREDPEARVACETLVTTERVILAGEVRAADDKMREIIAGLEDKVRAAIKDIGYAQKGFHWATAHYACHLHAQSADIAMGVDSAENKDEGAGDQGIMFGYASDETAELTSAPLQWSHNILRRLAEARHGGDHRLEPDAKSQVTVQYENGVPSRILKVLISHQHKEGLTPKDVEAIVKPYALEVLPQGMVTADTEWLVNPTGNFVIGGPDGDAGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKVDRSAAYALRYLAKNVVAAGLAKRCTLQVSYAIGVSRPLSFYVNTHGTGQVDEAKLEALLPELIGGLTPRGIRLHLGLNKPIYERTAAYGHFGRTPEADGGFSWERTDLVDALKREF
>AP018827.1|BBF81191.1|1943598_1944069_+|ribosome-binding-factor-A
MKRHSDKTRGHKAEAQGPSQRQLRAGELVRHALVEILREEELHDEALQGVSITITEVRCSPDLRHATVFVEPLGAGLGGVTISKDKIAPAIEALNRHAKFLRGILGRMIDMKFTPDLRFLHDESFNEAARIDALFMRPDVARDLRNDPRPEDEDED
>AP018827.1|BBF81192.1|1944072_1945026_+|tRNA-pseudouridine-synthase-B
MARKKKGDLVNGWVCLDKPVGMGSTQAVSFVRRLFNAQKAGHAGTLDPMASGILPIALGEATKTVPYLMDADKVYRFTVRWGQRTASYDLEGEILEQDDLRPSEAEIREVLPQFIGEIEQAPPAFSAIKVDGQRAYDLAREGVEVELEARPVVVHGLTLERILSADEAEFRLHCGKGTYVRAIARDLALELGVLGVVSALRRERVGSFDINLSAGVEKLEDLRHRDAALDALLPVETALDDIPALPVTEDEATRLKQGREIPLSFSRTQTAEDALKIRSQSGKSEHGRTLWAHRDGDIVALGELRLGQFYPTRLINL
>AP018827.1|BBF81193.1|1945059_1945329_+|SSU-ribosomal-protein-S15p
MSITLERKAELIKTHARSENDTGGSEVQIAILSERIANLTEHFKTHKKDNHSRRGLLKLVSQRRRLLDYLKATDTARYTAIVETLGLRR
>AP018827.1|BBF81194.1|1945674_1947927_+|polyribonucleotide-nucleotidyltransferase
MFDIKRKTIEWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLTVNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSHDMENDPDILGMVAASAALTLSGVPFMGPIGGARVGVINDEYVLNPTLDQMKESALDLVVAGTQDALMMVESEAQELSEDKMLGALMFAHAGMQPVIDAIIELAEHAAKEPFEFEAEDFSDVVAKIKELVGPDIIAAYAHKGKHERHAAVGEAKKKAAAVLVKSEENQEGVEAAVFGSAFKECEADVLRRDIIDHGKRVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSAEEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPVSGIAMGLILEKDGYAVLSDILGDEDHLGDMDFKVAGTELGITSLQMDIKVPGITEEIMTKALRQANEGRLHILGEMNKAISGAREELGEFAPKIETIKIATDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIAASEQSKIDAARDWIKSIASEPEIGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQIKNEKVAKTSDVLSEGDEVKVKFLGFDDRGKTKLSMKVVDQETGEDLTEKLAAEKAARDEARAASGEAPEADGDEGGEERSGGDRPRRSRRPRRD
>AP018827.1|BBF81195.1|1948100_1948265_-|hypothetical-protein
MAALPETPCARVYIDIVPPETFEGTAKITFPKGMFDASPPPAPYNPLGSPNPEA
>AP018827.1|BBF81196.1|1948924_1950136_-|hypothetical-protein
MFRYAENRNHTLNFWFNTLFYPESALIGETEMTEPAHSLLYHTCVDVTPPPPTDKRTAPDGALRLGLPTTKLWDVGRTLDFHFLGGTEAQKQNVRQSALKWSEAANLLMRFDVPIEGAEFRVAFNAVGNWSYVGLDNLGIKSPDPTMNIEQDGSALHEVGHALGCIHEHQQPASTIEWNKPVVYQALGGPPNYWDQAKVDFNVFNKYSAAQTQYSAFDPNSIMLYFFPDNWTTNGRGTHANSTLSAVDLAFIRRCYPGCTADFSKPQIATAACKVSVGPGTQFNNYYGNSWLMNFPNQSFIEVRFNQPKQYAGKNIYSRALLRLVHLTSMLYPNPGFSPIDIIVNGTTIKSDYSPPSGNYLTEEWDITANMKDGDNVIRLNFKNARSNYWIHKLQVDCVRILD
>AP018827.1|BBF81197.1|1950351_1951026_+|pentapeptide-repeat-protein
MHTLSDQILDRGAILLLANRGEPVRLVGCEAEGLDLSDFILNGWVFEDCILRKTKFRGTKLEQAQFISCKGGQADFTSADLTEAQFTACDFNNTPFKGAGLAQARFLRCKLTGADFSHSRNMDVNFEDCRLNDARLKNFSFVKQTLKSLDLTNADLQGCDFRQAVFEECSLRDALLDHARFEGADLRGTDIGGVRLEDARRFKGATISRSQAAELLSELGLKVR
>AP018827.1|BBF81198.1|1951187_1953413_+|TonB-dependent-receptor-domain-protein
MSSSKRLAGTSLSVLASLLLVSAAAAQTTTAPAEKPAEQKATEKTPEKVEEPTTVTVTGAKSQNRIDRQVYDNSKNADAAIGTAADTLNKVPGVTVDANGNVALRGNTNVQVYIDGKPSAMMQGDNRAGAIQAMSGGDIASVEVMNNPGAQFSSEGTGGIINLVMRKNRRPGGFGSANVAVGDGRYNGGVNGSYTVGKISLNGGINYRDESGTGRTTRRLINRDANGNIVSRTDSNGEGTGGFTNFALNGGIDYNLDDTNTLSAQVTYNKREFTSEGTGVSATYNALGAATQRFINQSRSKNPGSDQSLALTWSHTGNLPGETLKADLRISRSTGGSEYVNINNFTVPTVSTTTDTKISSRALSSTVFSIDYNRPVGTDQLTTGIQITRDDNTVSNESTGIGADGLSNDLLSSRFQYKQTISAAYATYQKPFGEKWVVLGGVRVENLDLDTLLASTGTRTSINYTKVSPSLFATYLLSDTAKLRFSYARRLQRPNPQALNAAITYVDAQNVSQGNPNLKPQETDSFEVGYEVTKPKINYQIRGYYRENNDVITQTSRFLTGNVLLTTQENGGSSTAGGVEVNINGQVTPKLNLSLGGDVARTELTTPANGTQEADSVNGRMNFTYTLTPKDTLQAFFFARGKTLTGQGYTEPFGMGNITYARKLTPKATLTVTVRDPLNTGKSVSYTDTKTVYSESSRSQQASVFYVGLRYTFGGPAPANAQQNQMRMMGGPGMGPRPGGM
>AP018827.1|BBF81199.1|1953458_1954589_-|PQQ-dependent-oxidoreductase,-gdhB-family
MKRRDLLLTGLSLSLLLTTPACAQTASHPAPESNAFEASVFAEGIEQPWGMAFLPDGRLLVTEKAGGIKLISKDGKSLQSISGGPTVVDYGQGGLLGVAVDPKFSENGLVYFSFSEEGENDTAGTAVARGKLDGSAITGLQVIWRQTPKVESANHWGSRIVFSKDGQYLFITVGDRANQRPLVQRLDTTVGKTLRIHPDGSIPDDNPFVKTARAKPEIWSLGHRNQQGAFVHPETGDLWTNEHGPQGGDEINIVKPGKNYGWPLITYGEEYGGGKIGQTAKEGLEQPLYYWTPSMAPGNMVFYNGPYKQWQGKVFVASLKFRYLGMITLENGKVVKEEKLLTNFRERIRDVVQGPDGALYAAFDNAEGRIVRVVPK
>AP018827.1|BBF81200.1|1954738_1955167_-|LSU-ribosomal-protein-L19p
MNLLQKIEAEEVAKLKAGKTVPAFQPGDTVRVNVKIKEGDRERVQAYEGVVIARAGTGINETFTVRKISFGEGVERKFPLLSPNIDSIEVKRRGVVRRAKLYYLRDRRGKSARIVERSQNSTRGSKGDELRAQMAASESTEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018827_1	1.2\|74270\|28\|AP018827\|CRISPRCasFinder	74270-74297	28	NC_049470	Arthrobacter phage TripleJ, complete genome	26840-26867	3	0.893
AP018827_2	2.2\|157812\|30\|AP018827\|PILER-CR,CRISPRCasFinder	157812-157841	30	NC_010070	Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence	11488-11517	9	0.7
AP018827_2	2.2\|157812\|30\|AP018827\|PILER-CR,CRISPRCasFinder	157812-157841	30	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	160998-161027	9	0.7
AP018827_2	2.2\|157812\|30\|AP018827\|PILER-CR,CRISPRCasFinder	157812-157841	30	NZ_CP028810	Burkholderia contaminans strain SK875 plasmid p875, complete sequence	7603-7632	9	0.7
AP018827_2	2.2\|157812\|30\|AP018827\|PILER-CR,CRISPRCasFinder	157812-157841	30	NZ_CP028965	Burkholderia sp. IDO3 plasmid p1, complete sequence	186099-186128	9	0.7
AP018827_2	2.2\|157812\|30\|AP018827\|PILER-CR,CRISPRCasFinder	157812-157841	30	NC_010802	Burkholderia multivorans ATCC 17616 plasmid pTGL1, complete sequence	101969-101998	9	0.7
AP018827_2	2.2\|157812\|30\|AP018827\|PILER-CR,CRISPRCasFinder	157812-157841	30	NZ_CP042167	Burkholderia contaminans strain ZCC plasmid unnamed1, complete sequence	198242-198271	9	0.7

1. spacer 1.2|74270|28|AP018827|CRISPRCasFinder matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 3, identity: 0.893

ggcggggttttaggcggttcctttcggg	CRISPR spacer
cgcggggttttaggcggtcccgttcggg	Protospacer
 *****************.** ******

2. spacer 2.2|157812|30|AP018827|PILER-CR,CRISPRCasFinder matches to NC_010070 (Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggcaactgatcattatggcaaaacag	CRISPR spacer
ttcgggcaactgatcatcatggtcgtgtac	Protospacer
 ****************.****. . ..*

3. spacer 2.2|157812|30|AP018827|PILER-CR,CRISPRCasFinder matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggcaactgatcattatggcaaaacag	CRISPR spacer
ttcgggcagctgatcattatggtggtgtac	Protospacer
 *******.*************... ..*

4. spacer 2.2|157812|30|AP018827|PILER-CR,CRISPRCasFinder matches to NZ_CP028810 (Burkholderia contaminans strain SK875 plasmid p875, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggcaactgatcattatggcaaaacag	CRISPR spacer
ttcgggcaactgatcatcatggtcgtgtac	Protospacer
 ****************.****. . ..*

5. spacer 2.2|157812|30|AP018827|PILER-CR,CRISPRCasFinder matches to NZ_CP028965 (Burkholderia sp. IDO3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggcaactgatcattatggcaaaacag	CRISPR spacer
ttcgggcaactgatcatcatggtcgtgtac	Protospacer
 ****************.****. . ..*

6. spacer 2.2|157812|30|AP018827|PILER-CR,CRISPRCasFinder matches to NC_010802 (Burkholderia multivorans ATCC 17616 plasmid pTGL1, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggcaactgatcattatggcaaaacag	CRISPR spacer
ttcgggcaactgatcatcatggtcgtgtac	Protospacer
 ****************.****. . ..*

7. spacer 2.2|157812|30|AP018827|PILER-CR,CRISPRCasFinder matches to NZ_CP042167 (Burkholderia contaminans strain ZCC plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggcaactgatcattatggcaaaacag	CRISPR spacer
ttcgggcaactgatcatcatggtcgtgtac	Protospacer
 ****************.****. . ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

732716 : 743169

uncultured_Mediterranean_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF80091.1\|732716_734102_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.3e-100	46.2
BBF80092.1\|734263_735163_-	twin-arginine translocation protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.6e-39	37.4
BBF80093.1\|735159_735753_-	twin-arginine translocation protein TatB	NA	NA	NA	NA
BBF80094.1\|735839_736037_-	twin-arginine translocation protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	3.6e-05	60.5
BBF80095.1\|736166_736838_-	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	2.5e-37	46.4
BBF80096.1\|736989_737847_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.2e-32	33.9
BBF80097.1\|737850_738942_-	beta N-acetyl-glucosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	4.6e-25	44.9
BBF80098.1\|738956_739748_-	hypothetical protein	NA	NA	NA	NA
BBF80099.1\|739990_740479_+	hypothetical protein	NA	NA	NA	NA
BBF80100.1\|740618_741536_-	abortive infection protein	NA	NA	NA	NA
BBF80101.1\|741591_743169_-	ATP-dependent DNA ligase LigC	C5IHN5	Burkholderia_virus	8.0e-10	31.7

DBSCAN-SWA_2

1522275 : 1545767

Rhodobacter_phage(22.22%)

portal,terminase,head,protease,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF80807.1\|1522275_1523775_-\|protease	HtrA protease/chaperone protein	A0A1B1IT49	uncultured_Mediterranean_phage	1.8e-27	29.1
BBF80808.1\|1523999_1524434_-	cytochrome c heme lyase subunit CcmL	NA	NA	NA	NA
BBF80809.1\|1524508_1526491_-	cytochrome c heme lyase subunit CcmF	NA	NA	NA	NA
BBF80810.1\|1526487_1526982_-	cytochrome c-type biogenesis protein CcmE, heme chaperone	NA	NA	NA	NA
BBF80811.1\|1527034_1528099_-	cytochrome c heme lyase subunit CcmH	NA	NA	NA	NA
BBF80812.1\|1528169_1529525_-	hypothetical protein	NA	NA	NA	NA
BBF80813.1\|1529602_1531012_-	sensor histidine kinase	NA	NA	NA	NA
BBF80814.1\|1531054_1531735_-	two-component system response regulator QseB	NA	NA	NA	NA
BBF80815.1\|1531734_1532079_-	hypothetical protein	NA	NA	NA	NA
BBF80816.1\|1532243_1533197_-	DnaJ-class molecular chaperone CbpA	A0A1V0SBY2	Catovirus	2.0e-08	39.5
BBF80817.1\|1533264_1536930_-	gene transfer agent host specificity protein	A0A0K1Y6G6	Rhodobacter_phage	1.9e-192	36.5
BBF80818.1\|1536917_1537442_-	gene transfer agent NlpC/P60 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.0e-22	38.6
BBF80819.1\|1537453_1538032_-	gene transfer agent FAD/FMN-containing dehydrogenase	NA	NA	NA	NA
BBF80820.1\|1539269_1539425_-	hypothetical protein	NA	NA	NA	NA
BBF80821.1\|1539435_1539723_-	hypothetical protein	NA	NA	NA	NA
BBF80822.1\|1539712_1540120_-\|tail	gene transfer agent tail protein	I3UM07	Rhodobacter_phage	1.5e-21	44.4
BBF80823.1\|1540159_1540585_-	gene transfer agent protein	NA	NA	NA	NA
BBF80824.1\|1540586_1540910_-	hypothetical protein	NA	NA	NA	NA
BBF80825.1\|1540906_1541176_-	hypothetical protein	NA	NA	NA	NA
BBF80826.1\|1541302_1542511_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	1.6e-79	42.7
BBF80827.1\|1542538_1542967_-\|head,protease	gene transfer agent prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	2.9e-15	35.8
BBF80828.1\|1542966_1543191_-	gene transfer agent associated protein	NA	NA	NA	NA
BBF80829.1\|1543183_1544380_-\|portal	gene transfer agent portal protein	W8ECU7	Geobacillus_phage	2.3e-65	39.1
BBF80830.1\|1544396_1545767_-\|terminase	gene transfer agent terminase protein	A0A1V0DY66	Dinoroseobacter_phage	4.9e-64	37.5

DBSCAN-SWA_3

2161859 : 2167465

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF81373.1\|2161859_2162150_+	mobile element protein	A0A218MNE7	uncultured_virus	1.7e-11	41.3
BBF81374.1\|2162401_2162944_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	9.9e-37	45.3
BBF81375.1\|2162973_2164023_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-89	47.7
BBF81376.1\|2164028_2164913_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	5.6e-29	34.1
BBF81377.1\|2164981_2165803_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.4e-82	53.5
BBF81378.1\|2165963_2166701_+	O-antigen export system permease protein RfbD	NA	NA	NA	NA
BBF81379.1\|2166718_2167465_+	ABC O-antigen transporter, ATP-binding component	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP018828

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. AP018827

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection