CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018005	Candidatus Rickettsiella viridis DNA, complete genome, strain: Ap-RA04	0 crisprs	cas3,DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

226166 : 295282

Pseudomonas_phage(14.29%)

protease,integrase

attL 273377:273393|attR 281439:281455

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBB14756.1\|226166_227153_+\|integrase	putative phage integrase	K4PAZ9	Burkholderia_phage	2.8e-77	47.2
BBB14757.1\|227410_229555_-	uncharacterized protein	NA	NA	NA	NA
BBB14758.1\|229907_232892_-	uncharacterized protein	NA	NA	NA	NA
BBB14759.1\|233218_234058_+	phenazine biosynthesis protein PhzF family	NA	NA	NA	NA
BBB14760.1\|234338_234935_-	hypothetical protein	NA	NA	NA	NA
BBB14761.1\|234993_235839_+\|integrase	phage integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	1.3e-38	34.6
BBB14762.1\|236032_236158_+	hypothetical protein	NA	NA	NA	NA
BBB14763.1\|236216_236735_-	uncharacterized protein	NA	NA	NA	NA
BBB14764.1\|236790_238101_-	uncharacterized protein	NA	NA	NA	NA
BBB14765.1\|238789_239017_-	hypothetical protein	NA	NA	NA	NA
BBB14766.1\|239281_239488_+	hypothetical protein	NA	NA	NA	NA
BBB14767.1\|240915_252564_-	Rhs family protein	NA	NA	NA	NA
BBB14768.1\|252648_255003_-	uncharacterized protein	NA	NA	NA	NA
BBB14769.1\|255611_256256_+	uncharacterized protein	NA	NA	NA	NA
BBB14770.1\|256239_257931_+	type IV secretory pathway VirD4 components-like protein	NA	NA	NA	NA
BBB14771.1\|258507_259242_+	hypothetical protein	NA	NA	NA	NA
BBB14772.1\|259546_259870_+	type IV secretory systen protein VirB2	NA	NA	NA	NA
BBB14773.1\|259894_260194_+	type IV secretory systen protein VirB3	NA	NA	NA	NA
BBB14774.1\|260212_262636_+	type IV secretion system protein VirB4	NA	NA	NA	NA
BBB14775.1\|262629_263331_+	type IV secretory systen protein VirB5	NA	NA	NA	NA
BBB14776.1\|263355_263475_-	hypothetical protein	NA	NA	NA	NA
BBB14777.1\|263500_263875_+	hypothetical protein	NA	NA	NA	NA
BBB14778.1\|263871_264882_+	type IV secretory systen protein VirB6	NA	NA	NA	NA
BBB14779.1\|264882_265626_+	type IV secretory systen protein VirB8	NA	NA	NA	NA
BBB14780.1\|266347_267433_+	type IV secretion system protein VirB10	NA	NA	NA	NA
BBB14781.1\|267439_268411_+	type IV secretion system protein VirB11	NA	NA	NA	NA
BBB14782.1\|268433_269393_-	uncharacterized protein	A0A1B2LRR6	Wolbachia_phage	2.0e-96	71.6
BBB14783.1\|269561_269966_-	putative sensory histidine-kinase / response regulator	NA	NA	NA	NA
BBB14784.1\|270081_270528_-	autoinducer-binding domain protein	NA	NA	NA	NA
BBB14785.1\|271008_273081_-	hypothetical protein	NA	NA	NA	NA
BBB14786.1\|273098_273965_-	DNA modification methylase	A0A1S6UAA7	Serratia_phage	1.9e-37	32.8
273377:273393	attL	NA	NA	NA	NA
BBB14787.1\|273978_274644_-	bacteriophage protein	I3PUZ9	Vibrio_phage	4.4e-26	35.5
BBB14788.1\|274637_275690_-	uncharacterized protein	V5URT9	Shigella_phage	5.1e-37	46.8
BBB14789.1\|275693_276611_-	uncharacterized protein	NA	NA	NA	NA
BBB14790.1\|277018_278149_+\|integrase	site-specific recombinase phage integrase family	A0A059VF45	Pseudomonas_phage	1.7e-86	48.9
BBB14791.1\|278848_282289_+	AMP-dependent synthetase and ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-18	24.0
281439:281455	attR	NA	NA	NA	NA
BBB14792.1\|282304_283600_-	putative ATPase	G3MBE0	Bacillus_virus	1.7e-74	38.1
BBB14793.1\|283659_284550_-	ribosomal protein S6 modification protein 1	I3ULC9	Synechococcus_phage	1.9e-37	32.5
BBB14794.1\|284559_284988_-	S6 modification enzyme RimK	NA	NA	NA	NA
BBB14795.1\|284989_285382_-	stringent starvation protein B	A0A1S5R3H3	Pseudomonas_phage	1.7e-25	46.9
BBB14796.1\|285386_286043_-	K03599 stringent starvation protein A	NA	NA	NA	NA
BBB14797.1\|286685_287126_-	30S ribosomal protein S9	NA	NA	NA	NA
BBB14798.1\|287141_287576_-	50S ribosomal protein L13	NA	NA	NA	NA
BBB14799.1\|287920_288922_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
BBB14800.1\|289137_290475_+	trigger factor	NA	NA	NA	NA
BBB14801.1\|290560_291226_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-53	51.5
BBB14802.1\|291391_292651_+\|protease	ATP-dependent Clp protease ATP-binding subunit	G3M9Z9	Bacillus_virus	5.0e-116	53.6
BBB14803.1\|292816_295282_+\|protease	lon protease	A0A0R6PGP8	Moraxella_phage	2.4e-215	50.6

DBSCAN-SWA_2

412568 : 421867

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBB14901.1\|412568_414884_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.5e-169	42.3
BBB14902.1\|415150_416437_-	isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	2.8e-13	68.5
BBB14903.1\|416626_417073_+	hypothetical protein	NA	NA	NA	NA
BBB14904.1\|417140_417776_+	peptidase M50	NA	NA	NA	NA
BBB14905.1\|417793_418609_+	segregation and condensation protein	A0A1B1IVW1	uncultured_Mediterranean_phage	2.3e-08	26.3
BBB14906.1\|418605_419358_+	putative oxidoreductase short-chain dehydrogenase/reductase family protein	A0A1E1ETD6	Acanthamoeba_castellanii_mimivirus	2.7e-08	30.7
BBB14907.1\|419498_421049_+	mitogen-activated protein kinase kinase	A0A2H4UW49	Bodo_saltans_virus	3.6e-07	23.6
BBB14908.1\|421045_421867_-	purine nucleoside phosphorylase	Q5YBA4	Grouper_iridovirus	8.8e-53	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage