CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018785	Escherichia coli SK1144 plasmid pSK1144, nearly complete genome	0 crisprs	RT	0	0	2	0
AP018784	Escherichia coli SK1144, complete genome	2 crisprs	DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	0	1	18	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82085 : 116217

Stx2-converting_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF21962.1\|82085_82790_+\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	5.8e-138	99.1
BBF21963.1\|82795_83047_+	secreted copper-sensitivity suppressor protein ScsC	NA	NA	NA	NA
BBF21964.1\|83036_83543_+	secreted copper-sensitivity suppressor membrane protein ScsD	NA	NA	NA	NA
BBF21965.1\|83725_84541_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
BBF21966.1\|84833_86774_+	high affinity Fe+2 binding protein permease component	NA	NA	NA	NA
BBF21967.1\|86814_87342_+	periplasmic protein p19	NA	NA	NA	NA
BBF21968.1\|87445_88825_+	high affinity Fe+2 binding protein membrane component	NA	NA	NA	NA
BBF21969.1\|88827_90111_+	high affinity Fe+2 binding protein permease component	NA	NA	NA	NA
BBF21970.1\|90100_91231_+	ABC-type antimicrobial peptide transport system	NA	NA	NA	NA
BBF21971.1\|91235_91931_+	molybdenum transport ATP-binding protein modC	G9BWD6	Planktothrix_phage	7.5e-29	38.9
BBF21972.1\|91917_92403_+	thiol-disulfide isomerase and thioredoxin	NA	NA	NA	NA
BBF21973.1\|92427_92913_+	predicted protein	NA	NA	NA	NA
BBF21974.1\|93034_93484_+	glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
BBF21975.1\|93458_93779_+	glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
BBF21976.1\|93817_94321_-	group II intron-encoded reverse transcriptase/maturase	A0A077SK28	Escherichia_phage	6.9e-24	93.2
BBF21977.1\|94951_95170_+	single-stranded DNA-binding protein	NA	NA	NA	NA
BBF21978.1\|95414_96914_+\|transposase	transposase	NA	NA	NA	NA
BBF21979.1\|96910_97666_+	insertion sequence ATP-binding protein	U5N3V8	Enterobacteria_phage	3.2e-33	33.9
BBF21980.1\|97807_98134_-\|transposase	transposase ORF A, IS629	Q6H9S4	Enterobacteria_phage	1.8e-54	97.2
BBF21981.1\|98198_98465_+\|transposase	IS1294 transposase	NA	NA	NA	NA
BBF21982.1\|98987_100100_-	enterotoxin TieB protein	NA	NA	NA	NA
BBF21983.1\|100231_102493_-	TonB-dependent colicin J protein CjrC	NA	NA	NA	NA
BBF21984.1\|102661_103438_-	TonB-dependent colicin J protein CjrB	NA	NA	NA	NA
BBF21985.1\|103445_104297_-	CjrA	NA	NA	NA	NA
BBF21986.1\|104652_105219_-	replication protein	NA	NA	NA	NA
BBF21987.1\|105795_105978_+	uncharacterized protein	NA	NA	NA	NA
BBF21988.1\|106563_106773_+	uncharacterized protein	NA	NA	NA	NA
BBF21989.1\|106790_107126_-	colicin Ia immunity protein	NA	NA	NA	NA
BBF21990.1\|107254_107602_+	hypothetical protein	NA	NA	NA	NA
BBF21991.1\|107621_108131_-	YdeA	NA	NA	NA	NA
BBF21992.1\|108127_108388_-	YdfA	NA	NA	NA	NA
BBF21993.1\|108489_108816_+	IS629 ORF1	Q6H9S4	Enterobacteria_phage	4.9e-55	99.1
BBF21994.1\|109037_109256_-	single-stranded DNA-binding protein	NA	NA	NA	NA
BBF21995.1\|109886_111410_+	group II intron-encoded reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
BBF21996.1\|111526_111883_+\|transposase	transposase ORF B, IS629	Q6H9S3	Enterobacteria_phage	3.6e-51	99.0
BBF21997.1\|111911_112316_+	ISSfl3 protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
BBF21998.1\|112312_112660_+	IS66 family element, orf2	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
BBF21999.1\|112708_112966_+\|transposase	IS66 family element, transposase	A0A0P0ZEB3	Stx2-converting_phage	2.3e-31	97.4
BBF22000.1\|112967_113726_+\|transposase	IS66 family element, transposase	A0A0P0ZBS5	Stx2-converting_phage	9.1e-129	96.9
BBF22001.1\|113739_114762_+\|transposase	transposase for insertion sequence	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7
BBF22002.1\|114761_115541_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
BBF22003.1\|115698_116217_+\|transposase	IS66 family element, transposase	A0A0P0ZEB3	Stx2-converting_phage	6.5e-94	99.4

DBSCAN-SWA_2

129878 : 135293

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF22015.1\|129878_130688_+	resolvase	I3WFA4	Macacine_betaherpesvirus	7.8e-54	95.5
BBF22016.1\|130825_131101_-	predicted protein	NA	NA	NA	NA
BBF22017.1\|131094_131739_-	putative partitioning protein	A0A222YXS3	Escherichia_phage	8.8e-40	43.5
BBF22018.1\|131967_132939_+	stable plasmid inheritance protein StbA	A0A222YXF2	Escherichia_phage	9.7e-67	42.9
BBF22019.1\|132943_133336_+	stable plasmid inheritance protein StbB	NA	NA	NA	NA
BBF22020.1\|133340_133589_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	5.0e-20	60.3
BBF22021.1\|133618_134611_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	7.3e-102	59.8
BBF22022.1\|134610_135048_-	ImpA UV protection protein	A0A1W6JNS2	Morganella_phage	1.1e-25	47.6
BBF22023.1\|135044_135293_-	ImpC	Q2A098	Sodalis_phage	1.2e-13	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. AP018784

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CRISPR-Cas detection and classification

Crispr_ID: AP018784_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018784_1

1627084-1627225

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018784_1

>merge|AP018784|1|1627084-1627225|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>AP018784|1|1|1627084-1627225|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
AP018784.1\|BBF18644.1\|1624538_1626305_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
AP018784.1\|BBF18641.1\|1623081_1623273_+\|citrate-synthase	unknown	unknown	unknown
AP018784.1\|BBF18652.1\|1636489_1639123_+\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|182093
AP018784.1\|BBF18650.1\|1633664_1634387_-\|transcriptional-regulator-of-succinyl-CoA-synthetase-operon	unknown	unknown	gnl\|CDD\|182065
AP018784.1\|BBF18653.1\|1639320_1640514_+\|TPR-domain-containing-protein	unknown	unknown	gnl\|CDD\|276809
AP018784.1\|BBF18647.1\|1630214_1631432_+\|dihydrolipoamide-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
AP018784.1\|BBF18651.1\|1634555_1636472_+\|PTS-system-fructose-specific-IIABC-components	unknown	unknown	gnl\|CDD\|182066
AP018784.1\|BBF18636.1\|1617746_1618943_+\|putative-altronate-hydrolase	unknown	unknown	gnl\|CDD\|377287
AP018784.1\|BBF18643.1\|1624191_1624539_+\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
AP018784.1\|BBF18637.1\|1618970_1619939_+\|putative-C4-dicarboxylate-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|270387
AP018784.1\|BBF18640.1\|1621816_1623100_-\|type-II-citrate-synthase	unknown	unknown	gnl\|CDD\|180164
AP018784.1\|BBF18648.1\|1631525_1632692_+\|succinyl-CoA-synthetase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
AP018784.1\|BBF18639.1\|1620459_1621770_+\|C4-dicarboxylate-transport-system-permease-large-protein	unknown	unknown	gnl\|CDD\|224509
AP018784.1\|BBF18645.1\|1626320_1627037_+\|succinate-dehydrogenase,-iron-sulfur-protein	unknown	unknown	gnl\|CDD\|235652
AP018784.1\|BBF18649.1\|1632691_1633561_+\|succinyl-CoA-synthetase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
AP018784.1\|BBF18655.1\|1643640_1644780_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
AP018784.1\|BBF18642.1\|1623793_1624198_+\|succinate-dehydrogenase-cytochrome-b556-large-membrane-subunit	unknown	unknown	gnl\|CDD\|181900
AP018784.1\|BBF18646.1\|1627398_1630200_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
AP018784.1\|BBF18638.1\|1619998_1620460_+\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|225632
AP018784.1\|BBF18654.1\|1642056_1643625_+\|cytochrome-bd-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052

Protein	Function_ID	Function_description	E-value
AP018784.1\|BBF18644.1\|1624538_1626305_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
AP018784.1\|BBF18650.1\|1633664_1634387_-\|transcriptional-regulator-of-succinyl-CoA-synthetase-operon	gnl\|CDD\|182065	PRK09764, PRK09764, GntR family transcriptional regulator.	1.54929e-163
AP018784.1\|BBF18653.1\|1639320_1640514_+\|TPR-domain-containing-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.01578e-17
AP018784.1\|BBF18647.1\|1630214_1631432_+\|dihydrolipoamide-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
AP018784.1\|BBF18643.1\|1624191_1624539_+\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
AP018784.1\|BBF18651.1\|1634555_1636472_+\|PTS-system-fructose-specific-IIABC-components	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	0
AP018784.1\|BBF18636.1\|1617746_1618943_+\|putative-altronate-hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	5.6924e-134
AP018784.1\|BBF18645.1\|1626320_1627037_+\|succinate-dehydrogenase,-iron-sulfur-protein	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
AP018784.1\|BBF18637.1\|1618970_1619939_+\|putative-C4-dicarboxylate-binding-periplasmic-protein	gnl\|CDD\|270387	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the hyperthermophilic bacterium Thermotoga maritima TRAP-type C4-dicarboxylate transport system TM0322 and its closely related proteins. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.46494e-145
AP018784.1\|BBF18640.1\|1621816_1623100_-\|type-II-citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
AP018784.1\|BBF18648.1\|1631525_1632692_+\|succinyl-CoA-synthetase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
AP018784.1\|BBF18639.1\|1620459_1621770_+\|C4-dicarboxylate-transport-system-permease-large-protein	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	2.11617e-118
AP018784.1\|BBF18652.1\|1636489_1639123_+\|alpha-mannosidase	gnl\|CDD\|182093	PRK09819, PRK09819, mannosylglycerate hydrolase.	0
AP018784.1\|BBF18649.1\|1632691_1633561_+\|succinyl-CoA-synthetase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
AP018784.1\|BBF18655.1\|1643640_1644780_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
AP018784.1\|BBF18642.1\|1623793_1624198_+\|succinate-dehydrogenase-cytochrome-b556-large-membrane-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	3.50714e-82
AP018784.1\|BBF18646.1\|1627398_1630200_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
AP018784.1\|BBF18638.1\|1619998_1620460_+\|uncharacterized-protein	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.66483e-21
AP018784.1\|BBF18654.1\|1642056_1643625_+\|cytochrome-bd-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0

>AP018784.1|BBF18645.1|1626320_1627037_+|succinate-dehydrogenase,-iron-sulfur-protein
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>AP018784.1|BBF18644.1|1624538_1626305_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>AP018784.1|BBF18643.1|1624191_1624539_+|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>AP018784.1|BBF18642.1|1623793_1624198_+|succinate-dehydrogenase-cytochrome-b556-large-membrane-subunit
MWALFMIRNVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>AP018784.1|BBF18641.1|1623081_1623273_+|citrate-synthase
MLLYQPFKVSLAPYCVRLPELKFAFAHQPGFTRLLFGSPLCERGENLGTELWALAGKGSIDDE
>AP018784.1|BBF18640.1|1621816_1623100_-|type-II-citrate-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYAQRDFKSDIKK
>AP018784.1|BBF18639.1|1620459_1621770_+|C4-dicarboxylate-transport-system-permease-large-protein
MTALSELLAGSWLDNWLMIIPLMFVCLFINMPVWLAMFCGILTYFLCYSNVPLMVAIQRLIATTQTPSLLAIPFFILLGTLMSYTGIAARILQIANVLIGRMRGGLGGANILVSTMMGGVSASNLADAAMLSRMMVPEMEQKGYSRGFAAAITASGSLITPIIPPGIALILYGLVADVSIGSMFMAGILPGLLCSAMLIVTVWLVAIRRGLKPSSEHWPKPKEVSVALVQAWPALFLIVAVIGGIRANIFTPTEAGAVAVLLVMFIGFVIYRELKISHVFTALSETARSTASVMLIIMASAALGWIFSLERAGITVAEFVTSLTDNKYVFLLIINLLLLVLGMFLEGSAILLILVPLLKPVVAHFGIDPVHFGIIMILNLSLGTLSPPVGTVMLLVCNTVQVSVGQFMREAVPLLISLILLLLVITYIPAISLLLV
>AP018784.1|BBF18638.1|1619998_1620460_+|uncharacterized-protein
MRLLGKMIEVAAVLTLFILVIMTIAAVIMRYCFHMPLQWTEEVSGLLMIWVVMFGAVVAERDNTHLSIPFLADALTSRGQRILAFLVSLMSIILLVVMAWSAWKLAAGTAFKTTQILKISWFWIDIAVTVGAIGVACFTALQLIKKTPRKEGE
>AP018784.1|BBF18637.1|1618970_1619939_+|putative-C4-dicarboxylate-binding-periplasmic-protein
MKKLLTPLLFLLALFSPMLNAAPVTIKIAYESNPGEPADTVVKHWAELVKKKSNGDIVFELYPSSQLGSKQDITEQALMGMNIITISDVGFLTDYDADLGILFGPYLTEDPQKLFAIYASDWFKQKEQKLREKGVHIVMSNYLYGTRQIIAKKPIRTPEDLKGMKIRVPNNVMQIKAIEAMGATPTPMPLGDVYPALTQGMIDGVENPVSVLYGQKLHEQAKYLSMVNYLTNTSLWLGGEAFFSTLTPAQLDIIHQTAYEAGLYSQKITTEQDATMLKTMQEQGVEIIYPDVAPFKEKALKVYQQFPEWTPGLYDTIQQQLK
>AP018784.1|BBF18636.1|1617746_1618943_+|putative-altronate-hydrolase
MEGYVRQNGRPGIRNTVQVIFMVECASHVAKKIAEGFPCHDVQYFGFSGCYPSDYGYRLVKNLATHSNVGGVLIISLGCENFDRRRLEQEVRESGRPCHTLVIQENKGTTNTITLGKQLVAEMLEQLADTPRCILNWSDLVVGTICGGSDGTSGITGNPAVGRAFDQLLEKGATCIFEESGELLGCEQHMMSRAASSQARDAIEVAMTKAERYYSLMGLGSFSNGNAEGGLTTQEEKSLGAYTKSGDALIAGVILPTQQTPFPGLWLMDVVPDGEPRFGYPNINDSSEALELIASGCHMVLFTTGRGSVIGSVIAPIIKVCNNPQTWEHLSDDMDVNAGRVISEGATLDDIADDIMQVIEHVANGQYCAAERLEHQEFVLTYKAFDYSKSAVCRADPR
>AP018784.1|BBF18646.1|1627398_1630200_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAISEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>AP018784.1|BBF18647.1|1630214_1631432_+|dihydrolipoamide-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDVVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>AP018784.1|BBF18648.1|1631525_1632692_+|succinyl-CoA-synthetase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>AP018784.1|BBF18649.1|1632691_1633561_+|succinyl-CoA-synthetase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>AP018784.1|BBF18650.1|1633664_1634387_-|transcriptional-regulator-of-succinyl-CoA-synthetase-operon
MGHKPLYRQIADRIREQITCGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVETHSEVLIFEVIPADNFLQQQLQISEQDRVWHVKRVRYRKQKPVALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGQVFEYSRNAFNTDDYKFTLIAQRKSPR
>AP018784.1|BBF18651.1|1634555_1636472_+|PTS-system-fructose-specific-IIABC-components
MNLTTLTHRDALCLNVRFTSREEAIHALTQRLAALGKISSTEQFLEEVYCRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMKLLTALTTRLADDELRARIQSATTPDELLSALDDKGDAQHTASFSYAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNIYVEKQGANGIEERLTAEQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGMLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGNNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRHHAVKHGNYLTDGVMP
>AP018784.1|BBF18652.1|1636489_1639123_+|alpha-mannosidase
MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKLVEGGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMEKLREIYPQRKFVMSRFEEVFEQIEAQRESLAILKGEFIDGKYMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFDYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRGSQFNLRDGRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQISQIVPSMGYRTLYIEANQPGNVVTPKSKTEGILENAFWQIALNEDGSLRLVDKDSGVRYDRVFQIEEGSDDGDEYDYSPAKEEWAITSANAKPQYDIIHEAWQSRAIIRYEIAVPRNLSERRAKQCSGRVGVETVITLSHNSRRIDADINLDNQADDHRIRVLIPTPFNTDVVLADTQFGSLTRPVKDCAMNVWQQEGWKEAPVPVWNMLNYAVLQEGRNGIAVFSEGLREFEVIGEENKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVSDSQLRGSFSCRLSLFSYIGTPVTAGVAQQARAWLTPVQCYNKIPWDAMKLNKAKFNVPESYSLLKMPPVGCLISALKKAEDRQELILRLFNPAELTSCDATVAFSRKVMTCTETMMNERFNTEKNEVLKELALFLPGQSRTFSYRIV
>AP018784.1|BBF18653.1|1639320_1640514_+|TPR-domain-containing-protein
MKKIVLPVALALLGMNAGAYAADVSIDILSATVKDKRIEGASVTLQRNGAQSVSGITNTSGSISLGTSFADNKDALLIVKKEGYSNLVVKCPCAGMTYAISPVMTNLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGPETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNGTTLDVRDLATVIMPATDSSAPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGVNAATTRANSYYNIAKIYETSGQNAEALQHYQLAYTEKNKPSYEEAIARVKTKM
>AP018784.1|BBF18654.1|1642056_1643625_+|cytochrome-bd-ubiquinol-oxidase-subunit-I
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>AP018784.1|BBF18655.1|1643640_1644780_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

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Crispr_ID: AP018784_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018784_2

1793291-1793373

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018784_2

>merge|AP018784|2|1793291-1793373|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>AP018784|2|2|1793291-1793373|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
AP018784.1\|BBF18796.1\|1793875_1794469_-\|uncharacterized-protein	unknown	unknown	unknown
AP018784.1\|BBF18787.1\|1782454_1782589_+\|uncharacterized-protein	unknown	unknown	unknown
AP018784.1\|BBF18803.1\|1798076_1799000_-\|IS102-transposase	unknown	unknown	gnl\|CDD\|290455
AP018784.1\|BBF18798.1\|1795086_1795614_-\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|337191
AP018784.1\|BBF18794.1\|1790451_1790772_+\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	unknown	unknown	gnl\|CDD\|178809
AP018784.1\|BBF18793.1\|1789904_1790129_-\|cold-shock-like-protein-cspD	unknown	unknown	gnl\|CDD\|77494
AP018784.1\|BBF18799.1\|1795854_1796133_-\|uncharacterized-protein	unknown	unknown	unknown
AP018784.1\|BBF18800.1\|1796129_1796609_-\|uncharacterized-protein	unknown	unknown	unknown
AP018784.1\|BBF18795.1\|1790802_1793079_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-clpA	unknown	unknown	gnl\|CDD\|236828
AP018784.1\|BBF18801.1\|1796746_1796938_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|310261
AP018784.1\|BBF18786.1\|1781577_1782477_-\|transporter	unknown	unknown	gnl\|CDD\|225287
AP018784.1\|BBF18804.1\|1799191_1799392_+\|uncharacterized-protein	unknown	unknown	unknown
AP018784.1\|BBF18789.1\|1784011_1785670_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
AP018784.1\|BBF18791.1\|1786773_1787889_+\|macrolide-specific-efflux-protein-macA	unknown	unknown	gnl\|CDD\|183211
AP018784.1\|BBF18790.1\|1785666_1786659_-\|enzyme	unknown	unknown	gnl\|CDD\|225537
AP018784.1\|BBF18802.1\|1797783_1798035_+\|uncharacterized-protein	unknown	unknown	unknown
AP018784.1\|BBF18792.1\|1787885_1789832_+\|putative-ABC-transporter-ATP-binding-component	unknown	unknown	gnl\|CDD\|182528
AP018784.1\|BBF18797.1\|1794470_1795085_-\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|222855
AP018784.1\|BBF18788.1\|1782891_1783587_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
AP018784.1\|BBF18805.1\|1799448_1799628_+\|uncharacterized-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018784.1\|BBF18803.1\|1798076_1799000_-\|IS102-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.3218e-55
AP018784.1\|BBF18798.1\|1795086_1795614_-\|uncharacterized-protein	gnl\|CDD\|337191	pfam08765, Mor, Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	1.95619e-11
AP018784.1\|BBF18794.1\|1790451_1790772_+\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
AP018784.1\|BBF18793.1\|1789904_1790129_-\|cold-shock-like-protein-cspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
AP018784.1\|BBF18801.1\|1796746_1796938_+\|hypothetical-protein	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	0.00010501
AP018784.1\|BBF18795.1\|1790802_1793079_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-clpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
AP018784.1\|BBF18797.1\|1794470_1795085_-\|uncharacterized-protein	gnl\|CDD\|222855	PHA02529, O, capsid-scaffolding protein; Provisional.	0.000410051
AP018784.1\|BBF18789.1\|1784011_1785670_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
AP018784.1\|BBF18791.1\|1786773_1787889_+\|macrolide-specific-efflux-protein-macA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
AP018784.1\|BBF18790.1\|1785666_1786659_-\|enzyme	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.26125e-132
AP018784.1\|BBF18792.1\|1787885_1789832_+\|putative-ABC-transporter-ATP-binding-component	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
AP018784.1\|BBF18786.1\|1781577_1782477_-\|transporter	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
AP018784.1\|BBF18788.1\|1782891_1783587_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144

>AP018784.1|BBF18795.1|1790802_1793079_+|ATP-dependent-Clp-protease-ATP-binding-subunit-clpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>AP018784.1|BBF18794.1|1790451_1790772_+|ATP-dependent-Clp-protease-adaptor-protein-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>AP018784.1|BBF18793.1|1789904_1790129_-|cold-shock-like-protein-cspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>AP018784.1|BBF18792.1|1787885_1789832_+|putative-ABC-transporter-ATP-binding-component
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>AP018784.1|BBF18791.1|1786773_1787889_+|macrolide-specific-efflux-protein-macA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>AP018784.1|BBF18790.1|1785666_1786659_-|enzyme
MVKSTSCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>AP018784.1|BBF18789.1|1784011_1785670_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>AP018784.1|BBF18788.1|1782891_1783587_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>AP018784.1|BBF18787.1|1782454_1782589_+|uncharacterized-protein
MINSPENMKTQSLQRRFEMRDDTLLKAEGRVKLQLKGNVMHKDR
>AP018784.1|BBF18786.1|1781577_1782477_-|transporter
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>AP018784.1|BBF18796.1|1793875_1794469_-|uncharacterized-protein
MKPVISLIEALNAVKNNLASLNEQKEKLSRRIGEINSEITTLQDMPLSLNDYCSFIPEYIERFGQEEYQSFKLALCNGSGSEGNAERWGNLENENGDISGLFRLVGLSGNVPLADVGMTVMRKLCFFFPDVVATRLTEALKKDKSVAWGNDNLPSLADRRKTVAALVNERTKLEIELKSVSEEIAGITEISNLSMTE
>AP018784.1|BBF18797.1|1794470_1795085_-|uncharacterized-protein
MKDIDIGNWKTIEIFRAGTHITMAGQEIAFSDEDIDNMAAAYNGYHRAGYGAPLCIGHPASNSPSYGETTGLISKNGRLFALVKPDETLLGLVRAGRYRKVSAAFYRPGEANNPAGIGAWYLQHIGFLGSQPPAVKGLAQVEFMESCYPVCFYHNESHVHFSEFDGIADSQRAAQHLLIKDVSAACNVSYSEALALTTPFIWSY
>AP018784.1|BBF18798.1|1795086_1795614_-|uncharacterized-protein
MITREGLYASSDTLGAMGDAIEVFLINKGYSRQQSCSAANHIVLGISDNLGGCQGYMAEHRERAPKAVRFLQELTESIEQTLGTIPYLCSQAEKLSPAITECLRNTFFRGNIYIPMGASKNTFDRNSKILADFYQGISIFELSKKYKRSIQCIYQIIAAERKKNKIQRDAKYGVI
>AP018784.1|BBF18799.1|1795854_1796133_-|uncharacterized-protein
MKATANFIACPHESQGTSYDVLFVNADAPSTEIWEAAFSRLEAVRRLNDELSVAVDDKSTQTPLALVNSILLSDAMAMINLIGNRLDQESKE
>AP018784.1|BBF18800.1|1796129_1796609_-|uncharacterized-protein
MANDKSNDSVATNQVDTIRLPLIKAQSEAINPPCIGEWYIEINSGMNAIVKECNGNTVVFSYEQYPQANHSFPLNAFVNIFERRDIPQQQLQNIDHKKTYCRELFRVALRYSGTTELDILTKSIEEFIACSLADKYSPGLNAASYEIYNKFIINRRTAK
>AP018784.1|BBF18801.1|1796746_1796938_+|hypothetical-protein
MSTILRDKSQKGAGKAPMFNVRISPDLKEQFEIQAKKEGVSLGNWLKELGRAELKRKGIEPKG
>AP018784.1|BBF18802.1|1797783_1798035_+|uncharacterized-protein
MPALAHLKSGNINNLMTPDVILNPELESTPNLMATAISQITDERDLLNQLLDQAQMADAFEQFSRTVRTSKLAFVKENKGFVE
>AP018784.1|BBF18803.1|1798076_1799000_-|IS102-transposase
MAKQKFKITNWPTYNKALINRGSITFWLDDEAIQAWYESATPSSRGRPQRYSDLAITTVLVIKRVFRLTLRAAQGFIDSIFTLMNVPLRCPDYTSVSKRAKSVNVSFKTFTRGEIAHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHLAVDSKTHEIICADLSLNNVTDSEAFPGLIRQTHRKIRAASADGAYDTRLCHDELRRKKISALIPPRKGAGYWPGEYADRNRAVANQRLTGSNARWKWTTDYNRRSIAETAMYRVKQLFGGSLTLRDYDGQVAEAMALVRALNKMTKAGMPESVRIA
>AP018784.1|BBF18804.1|1799191_1799392_+|uncharacterized-protein
MDIANLRTFGEKALESMPRMGSGYRELRQFRRLQDYQKSANVGAFGKSQTTLLFRFMKHLRHHKTK
>AP018784.1|BBF18805.1|1799448_1799628_+|uncharacterized-protein
MCNEEKIRSHLSRSAEEMLEAGQALVVSRNCLLHEEWLNFLSPLDLECCVAQRIAQAAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
AP018784_1	1.1\|1627131\|48\|AP018784\|CRISPRCasFinder	1627131-1627178	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

2. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

3. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

4. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

5. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

6. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

7. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

8. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

9. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

10. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

11. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

12. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

13. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

14. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

15. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

16. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

17. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

18. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

19. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

20. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

21. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

22. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

23. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

24. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

25. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

26. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

27. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

28. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

29. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

30. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

31. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

32. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

33. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

34. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

35. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

36. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

37. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

38. spacer 1.1|1627131|48|AP018784|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

500270 : 505183

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF17602.1\|500270_500492_-	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	2.1e-09	44.4
BBF17603.1\|500578_501055_-	radC-like protein yeeS	NA	NA	NA	NA
BBF17604.1\|501070_501556_-	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
BBF17605.1\|501610_502429_-	YubP	A0A2C9CX26	Yersinia_phage	1.5e-44	38.2
BBF17606.1\|502531_502720_+	hypothetical protein	NA	NA	NA	NA
BBF17607.1\|502847_503252_+	ISSfl3 protein	A0A0P0ZCV4	Stx2-converting_phage	1.1e-69	99.3
BBF17608.1\|503248_503596_+	IS66 family element, orf2	A0A0P0ZDM8	Stx2-converting_phage	7.5e-62	99.1
BBF17609.1\|503644_505183_+\|transposase	IS66 family element, transposase	A0A0P0ZEB3	Stx2-converting_phage	4.5e-292	98.6

DBSCAN-SWA_2

647335 : 698111

Escherichia_phage(25.0%)

integrase,tRNA,transposase

attL 639649:639664|attR 678996:679011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
639649:639664	attL	NA	NA	NA	NA
BBF17743.1\|647335_647791_-\|transposase	transposase	NA	NA	NA	NA
BBF17744.1\|647856_648243_-	endoribonuclease L-PSP	NA	NA	NA	NA
BBF17745.1\|648315_648777_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
BBF17746.1\|648789_649725_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	3.2e-51	39.9
BBF17747.1\|650143_650539_-	mRNA endoribonuclease	NA	NA	NA	NA
BBF17748.1\|650669_651383_-	oxidoreductase with NAD(P)-binding Rossmann-fold domain	NA	NA	NA	NA
BBF17749.1\|651453_652047_+	transcriptional regulator	NA	NA	NA	NA
BBF17750.1\|652191_652644_+	yjgK protein	NA	NA	NA	NA
BBF17751.1\|652766_653783_+	yjgL protein	NA	NA	NA	NA
BBF17752.1\|653793_654171_-\|transposase	InsAB' transposase	U5P0U6	Shigella_phage	8.4e-67	99.2
BBF17753.1\|654215_654491_-	IS1 protein InsA	Q71TE9	Escherichia_phage	2.0e-46	98.9
BBF17754.1\|654577_654886_+	yjgL protein	NA	NA	NA	NA
BBF17755.1\|654872_655103_+	yjgL protein	NA	NA	NA	NA
BBF17756.1\|655203_656208_-	ornithine carbamoyltransferase	NA	NA	NA	NA
BBF17757.1\|656369_656786_+	protein inhibitor of RNase E	NA	NA	NA	NA
BBF17758.1\|656831_657335_-	acetyltransferase	NA	NA	NA	NA
BBF17759.1\|657527_658724_+	inner membrane protein	NA	NA	NA	NA
BBF17760.1\|658777_661633_-\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	7.9e-141	36.7
BBF17761.1\|661632_662076_-	DNA polymerase III subunit chi	NA	NA	NA	NA
BBF17762.1\|662237_663749_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.2e-47	38.4
BBF17763.1\|664036_665116_+	permease YjgP/YjgQ family protein	NA	NA	NA	NA
BBF17764.1\|665115_666198_+	permease YjgP/YjgQ family protein	NA	NA	NA	NA
BBF17765.1\|666316_667819_-	ATPase	A0A248XCZ8	Klebsiella_phage	1.5e-82	44.3
BBF17766.1\|667896_668895_-	L-idonate regulatory protein	NA	NA	NA	NA
BBF17767.1\|668961_670281_-	Gnt-II system L-idonate transporter	NA	NA	NA	NA
BBF17768.1\|670345_671110_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
BBF17769.1\|671133_672165_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
BBF17770.1\|672381_672945_+	D-gluconate kinase, thermosensitive	NA	NA	NA	NA
BBF17771.1\|672948_673968_-	alcohol dehydrogenase, Zn-dependent and NAD(P)-binding	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	2.4e-44	30.4
BBF17772.1\|674397_675324_-\|integrase	phage integrase	NA	NA	NA	NA
BBF17773.1\|675313_676933_-	putative uncharacterized protein	NA	NA	NA	NA
BBF17774.1\|676942_678148_-	antirestriction protein	A0A1V0EEV1	Caulobacter_phage	2.8e-47	37.7
BBF17775.1\|678233_678527_-	uncharacterized protein	NA	NA	NA	NA
BBF17776.1\|678894_679767_-	hypothetical protein	NA	NA	NA	NA
678996:679011	attR	NA	NA	NA	NA
BBF17777.1\|680011_681835_-	putative uncharacterized protein	NA	NA	NA	NA
BBF17778.1\|681827_684797_-	histidine kinase	A0A1B5FPD5	Escherichia_phage	7.3e-81	32.9
BBF17779.1\|684890_686087_-	cytosine specific DNA methyltransferase	A0A191SAU1	Nostoc_phage	2.2e-36	30.8
BBF17780.1\|686359_686860_-	predicted protein	NA	NA	NA	NA
BBF17781.1\|686893_687931_+\|transposase	IS630 family transposase	NA	NA	NA	NA
BBF17782.1\|687914_688439_-	preprotein translocase subunit secA	NA	NA	NA	NA
BBF17783.1\|689428_689725_+	transcriptional regulator	NA	NA	NA	NA
BBF17784.1\|690354_691431_+	filamentation induced by cAMP protein Fic	NA	NA	NA	NA
BBF17785.1\|691481_692111_-	putative uncharacterized protein	NA	NA	NA	NA
BBF17786.1\|692203_692428_+	IS1 orfA	A0A2L1IV22	Escherichia_phage	1.2e-36	97.3
BBF17787.1\|692556_692850_+\|transposase	IS1 transposase orfB	U5P0U6	Shigella_phage	2.0e-44	89.7
BBF17788.1\|693021_693846_-	transcriptional regulator	NA	NA	NA	NA
BBF17789.1\|694011_695568_+	hypothetical protein	NA	NA	NA	NA
BBF17790.1\|695567_696257_+	putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
BBF17791.1\|696368_696533_+	inner membrane protein	NA	NA	NA	NA
BBF17792.1\|697817_698111_-\|transposase	transposase of ISEc21	NA	NA	NA	NA

DBSCAN-SWA_3

1404644 : 1448493

Bacillus_virus(11.11%)

protease,integrase,tRNA,tail

attL 1417056:1417071|attR 1459539:1459554

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF18438.1\|1404644_1405562_-\|protease	protease, membrane anchored	NA	NA	NA	NA
BBF18439.1\|1405707_1406385_+	transporter subunit: ATP-binding component of ABC superfamily	G3M9Y6	Bacillus_virus	2.4e-27	34.3
BBF18440.1\|1406371_1407151_+	inner membrane protein ybbM	NA	NA	NA	NA
BBF18441.1\|1407333_1408188_-	thioredoxin	NA	NA	NA	NA
BBF18442.1\|1408248_1409058_-	oxidoreductase ybbO	NA	NA	NA	NA
BBF18443.1\|1409047_1409704_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
BBF18444.1\|1409641_1410328_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-33	35.6
BBF18445.1\|1410324_1412739_+	permease	NA	NA	NA	NA
BBF18446.1\|1412907_1414911_+	HNH endonuclease domain-containing protein	NA	NA	NA	NA
BBF18447.1\|1414900_1415065_+	hypothetical protein	NA	NA	NA	NA
BBF18448.1\|1415052_1415559_+	uncharacterized protein	NA	NA	NA	NA
BBF18449.1\|1415565_1416234_+	uncharacterized protein	NA	NA	NA	NA
BBF18450.1\|1416240_1416909_+	uncharacterized protein	NA	NA	NA	NA
BBF18451.1\|1416960_1418067_-\|tRNA	tRNA 2-selenouridine synthase	NA	NA	NA	NA
1417056:1417071	attL	NA	NA	NA	NA
BBF18452.1\|1418135_1419062_-	DNA-binding transcriptional activator AllS	NA	NA	NA	NA
BBF18453.1\|1419291_1419774_+	ureidoglycolate hydrolase	NA	NA	NA	NA
BBF18454.1\|1419851_1420667_+	putative regulator of allantoin and glyoxylate utilization operons	NA	NA	NA	NA
BBF18455.1\|1420756_1422538_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	7.8e-38	27.2
BBF18456.1\|1422550_1423327_+	hydroxypyruvate isomerase	NA	NA	NA	NA
BBF18457.1\|1423426_1424305_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
BBF18458.1\|1424474_1425929_+	allantoin permease	NA	NA	NA	NA
BBF18459.1\|1425988_1427350_+	allantoinase	NA	NA	NA	NA
BBF18460.1\|1427405_1428707_+	uracil/xanthine transporter	NA	NA	NA	NA
BBF18461.1\|1428728_1429874_+	glycerate kinase	W6LM47	Streptococcus_phage	9.7e-50	43.0
BBF18462.1\|1430002_1430788_-	ylbA protein	NA	NA	NA	NA
BBF18463.1\|1430798_1432034_-	allantoate amidohydrolase	NA	NA	NA	NA
BBF18464.1\|1432055_1433105_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
BBF18465.1\|1433421_1435089_+	membrane protein FdrA	NA	NA	NA	NA
BBF18466.1\|1435098_1436358_+	ylbE protein	NA	NA	NA	NA
BBF18467.1\|1436368_1437184_+	carboxylase	NA	NA	NA	NA
BBF18468.1\|1437180_1438074_+	carbamate kinase	NA	NA	NA	NA
BBF18469.1\|1438607_1439675_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
BBF18470.1\|1439671_1440181_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	NA	NA	NA
BBF18471.1\|1440276_1440606_-	uncharacterized protein	NA	NA	NA	NA
BBF18472.1\|1440716_1441439_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
BBF18473.1\|1441441_1441936_-	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA
BBF18474.1\|1442109_1443495_+\|tRNA	cysteinyl-tRNA synthetase	M1PG92	Moumouvirus	3.9e-45	34.8
BBF18475.1\|1443530_1444052_-	inner membrane protein	NA	NA	NA	NA
BBF18476.1\|1444159_1444372_-	RNA-binding protein	NA	NA	NA	NA
BBF18477.1\|1444373_1445240_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
BBF18478.1\|1445594_1445903_-\|integrase	phage integrase	A0A088CD23	Shigella_phage	7.4e-37	81.8
BBF18479.1\|1445922_1446222_-\|integrase	phage integrase	B9UDL9	Salmonella_phage	5.0e-30	81.2
BBF18480.1\|1446279_1446585_+\|tail	tail fiber chaperone	K7PMH7	Enterobacteria_phage	4.0e-43	63.6
BBF18481.1\|1446639_1447296_-	unknown protein encoded within prophage	NA	NA	NA	NA
BBF18482.1\|1447539_1448493_-\|protease	outer membrane protease	NA	NA	NA	NA
1459539:1459554	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1790451 : 1833277

Bacillus_phage(16.67%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF18794.1\|1790451_1790772_+\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
BBF18795.1\|1790802_1793079_+\|protease	ATP-dependent Clp protease ATP-binding subunit clpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
BBF18796.1\|1793875_1794469_-	uncharacterized protein	NA	NA	NA	NA
BBF18797.1\|1794470_1795085_-	uncharacterized protein	A4JWJ9	Burkholderia_virus	1.3e-24	41.1
BBF18798.1\|1795086_1795614_-	uncharacterized protein	NA	NA	NA	NA
BBF18799.1\|1795854_1796133_-	uncharacterized protein	NA	NA	NA	NA
BBF18800.1\|1796129_1796609_-	uncharacterized protein	NA	NA	NA	NA
BBF18801.1\|1796746_1796938_+	hypothetical protein	NA	NA	NA	NA
BBF18802.1\|1797783_1798035_+	uncharacterized protein	J9RW58	Pseudomonas_phage	4.0e-09	84.2
BBF18803.1\|1798076_1799000_-\|transposase	IS102 transposase	Q1MVF0	Enterobacteria_phage	1.6e-172	97.1
BBF18804.1\|1799191_1799392_+	uncharacterized protein	J9RW58	Pseudomonas_phage	3.2e-09	72.7
BBF18805.1\|1799448_1799628_+	uncharacterized protein	NA	NA	NA	NA
BBF18806.1\|1800143_1800362_-	translation initiation factor IF-1	NA	NA	NA	NA
BBF18807.1\|1800646_1801351_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
BBF18808.1\|1801392_1803114_-	cysteine/glutathione ABC transporter	W8CYL7	Bacillus_phage	1.4e-20	25.0
BBF18809.1\|1803114_1804881_-	ATP-binding/permease protein cydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
BBF18810.1\|1805003_1805969_-	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
BBF18811.1\|1806512_1807007_+	leucine-responsive transcriptional regulator	NA	NA	NA	NA
BBF18812.1\|1807141_1811248_+	DNA translocase	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
BBF18813.1\|1811312_1811915_-\|transposase	transposase ORF B, IS3 family, IS150 group	A0A1B1P773	Bacillus_phage	1.7e-61	56.8
BBF18814.1\|1812139_1812313_-\|transposase	transposase ORF A, IS1397	NA	NA	NA	NA
BBF18815.1\|1812839_1813454_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
BBF18816.1\|1813464_1814808_+	recombination factor protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
BBF18817.1\|1814898_1816191_+\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
BBF18818.1\|1816429_1818874_+	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
BBF18819.1\|1818884_1819502_+	anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
BBF18820.1\|1819503_1820367_+	dimethyl sulfoxide reductase, anaerobic subunit C	NA	NA	NA	NA
BBF18821.1\|1820402_1821029_-	isochorismatase superfamily hydrolase	NA	NA	NA	NA
BBF18822.1\|1821342_1822491_+	MFS family transporter protein	NA	NA	NA	NA
BBF18823.1\|1822587_1823328_-	pyruvate formate lyase-activating enzyme 1	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
BBF18824.1\|1823519_1825802_-	pyruvate formate lyase I	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
BBF18825.1\|1825856_1826714_-	formate transporter	NA	NA	NA	NA
BBF18826.1\|1827119_1828880_-	hypothetical protein	NA	NA	NA	NA
BBF18827.1\|1829009_1829702_+	inner membrane protein	NA	NA	NA	NA
BBF18828.1\|1829900_1830989_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
BBF18829.1\|1831059_1832343_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
BBF18830.1\|1832512_1833277_+\|protease	metalloprotease ycal	NA	NA	NA	NA

DBSCAN-SWA_5

1859659 : 1905461

Burkholderia_virus(39.53%)

tRNA,tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF18852.1\|1859659_1861060_-\|tRNA	asparaginyl-tRNA synthetase	A0A2K9V902	Bandra_megavirus	6.9e-82	36.1
BBF18853.1\|1861228_1862431_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
BBF18854.1\|1862696_1865309_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.3e-19	22.8
BBF18855.1\|1865351_1865609_-	aliphatic sulfonates transport ATP-binding subunit	NA	NA	NA	NA
BBF18856.1\|1865692_1866265_-	Min	A0A0A7NPV4	Enterobacteria_phage	7.9e-85	84.6
BBF18857.1\|1866549_1866840_+\|tail	phage tail fiber protein	NA	NA	NA	NA
BBF18858.1\|1866880_1867363_+\|tail	phage tail fiber protein	K7P7Q7	Enterobacteria_phage	3.4e-28	45.3
BBF18859.1\|1867362_1867977_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	2.3e-61	61.5
BBF18860.1\|1867983_1869876_-\|tail	phage tail fiber protein	A0A0K2FIZ6	Escherichia_phage	1.3e-38	42.9
BBF18861.1\|1869878_1870457_-\|tail	putative bacteriophage tail fiber protein	A4JWL7	Burkholderia_virus	1.7e-66	66.8
BBF18862.1\|1870449_1871553_-\|plate	phage-related baseplate assembly protein J	Q6QI99	Burkholderia_phage	6.4e-107	55.2
BBF18863.1\|1871543_1871891_-\|plate	bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
BBF18864.1\|1871945_1872542_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	1.4e-36	45.7
BBF18865.1\|1872538_1873693_-	putative phage late genes expression control protein	Q6QIA2	Burkholderia_phage	3.2e-85	47.6
BBF18866.1\|1873680_1873893_-\|tail	phage tail protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
BBF18867.1\|1873892_1874777_-	P2 GpU	A4JWL1	Burkholderia_virus	6.8e-51	47.9
BBF18868.1\|1874776_1877989_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.3e-80	30.9
BBF18869.1\|1878146_1878482_-	phage-like protein	NA	NA	NA	NA
BBF18870.1\|1878579_1878861_-	phage-like protein	NA	NA	NA	NA
BBF18871.1\|1878863_1879385_-\|tail	bacteriophage tail core protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
BBF18872.1\|1879384_1880812_-\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
BBF18873.1\|1880801_1881053_-	phage-like protein	NA	NA	NA	NA
BBF18874.1\|1881052_1881517_-	conserved phage-related protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
BBF18875.1\|1881516_1881963_-	phage-like protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
BBF18876.1\|1881964_1882303_-	phage-like protein	NA	NA	NA	NA
BBF18877.1\|1882312_1883266_-	phage-like protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
BBF18878.1\|1883280_1884396_-	phage-like protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
BBF18879.1\|1884610_1885069_-	putative phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	3.4e-30	44.2
BBF18880.1\|1885071_1885893_-	phage Mu F virion morphogenesis protein	A4JWJ6	Burkholderia_virus	1.2e-97	61.2
BBF18881.1\|1885873_1887370_-	Gp29	A4JWJ5	Burkholderia_virus	2.6e-167	59.6
BBF18882.1\|1887369_1888893_-	Mu-like prophage FluMu protein gp28	A4JWJ4	Burkholderia_virus	6.2e-185	62.7
BBF18883.1\|1888889_1889432_-	Mu-like phage-related protein	A4JWJ3	Burkholderia_virus	4.9e-44	53.3
BBF18884.1\|1889434_1889746_-	phage protein	A0A0S4L0A3	Pseudomonas_phage	4.0e-30	60.6
BBF18885.1\|1889745_1890072_-	prophage membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
BBF18886.1\|1890068_1890722_-	lipoprotein	A0A0S4L1H0	Pseudomonas_phage	4.3e-10	31.9
BBF18887.1\|1890708_1891446_-	phage lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	2.9e-63	59.5
BBF18888.1\|1891448_1891799_-	phage-related membrane protein	A4JWP3	Burkholderia_virus	9.0e-23	53.9
BBF18889.1\|1891929_1892673_+	uncharacterized protein	NA	NA	NA	NA
BBF18890.1\|1892648_1893053_-	uncharacterized protein	NA	NA	NA	NA
BBF18891.1\|1893051_1893267_+	uncharacterized protein	NA	NA	NA	NA
BBF18892.1\|1893458_1894223_+	DNA adenine methylase subfamily	A2I2Y7	Vibrio_virus	4.0e-100	64.4
BBF18893.1\|1894339_1894753_-	uncharacterized protein	F6MII3	Haemophilus_phage	5.9e-05	34.4
BBF18894.1\|1894778_1894967_+	predicted transcriptional regulators	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
BBF18895.1\|1895013_1895328_+	phage-related protein helix-turn-helix domain superfamily	Q5ZR02	Pseudomonas_phage	3.6e-23	55.9
BBF18896.1\|1895338_1896250_+	phage protein	A4JWN3	Burkholderia_virus	2.0e-74	55.3
BBF18897.1\|1896253_1898023_+\|transposase	phage transposase	Q6QIE0	Burkholderia_phage	1.6e-229	68.7
BBF18898.1\|1898033_1899200_+	ExeA-like protein	A4JWN1	Burkholderia_virus	9.7e-122	59.7
BBF18899.1\|1899202_1899472_+	prophage protein	NA	NA	NA	NA
BBF18900.1\|1899499_1900030_+	Mu-like prophage host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
BBF18901.1\|1900127_1900322_+	uncharacterized protein	NA	NA	NA	NA
BBF18902.1\|1900318_1900591_+	uncharacterized protein	NA	NA	NA	NA
BBF18903.1\|1900600_1900897_+	uncharacterized protein	NA	NA	NA	NA
BBF18904.1\|1900911_1901127_+	uncharacterized protein	NA	NA	NA	NA
BBF18905.1\|1901123_1901807_+	phage associated protein	A0A2P9JZH4	Alteromonadaceae_phage	3.8e-33	36.5
BBF18906.1\|1901803_1902034_+	corresponds to STY1594 from Accession AL513382:Salmonella typhi CT18	NA	NA	NA	NA
BBF18907.1\|1902023_1902230_+	uncharacterized protein	NA	NA	NA	NA
BBF18908.1\|1902231_1902681_+	Mu-like prophage protein gp16	A4JWM5	Burkholderia_virus	1.4e-23	45.1
BBF18909.1\|1902652_1903051_+	DNA-binding protein rdgB	Q6QIE8	Burkholderia_phage	1.0e-30	55.9
BBF18910.1\|1903165_1903798_+	permeases of the major facilitator superfamily	NA	NA	NA	NA
BBF18911.1\|1903801_1903963_-	uncharacterized protein	NA	NA	NA	NA
BBF18912.1\|1904118_1904670_-	aliphatic sulfonates transport ATP-binding subunit	G3M9Y6	Bacillus_virus	1.2e-21	37.3
BBF18913.1\|1904666_1905461_-	alkanesulfonates transport system permease protein	G3M9Y4	Bacillus_virus	1.4e-15	24.5

DBSCAN-SWA_6

2075544 : 2176362

121

Enterobacteria_phage(50.0%)

integrase,terminase,tRNA,head,capsid,portal,holin,tail,lysis

attL 2097901:2097920|attR 2158988:2159007

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF19084.1\|2075544_2077986_-	exonuclease	V5UQJ3	Shigella_phage	3.1e-114	46.9
BBF19085.1\|2078079_2078271_-	Qin prophage	NA	NA	NA	NA
BBF19086.1\|2078267_2078456_-	cell division inhibition protein	NA	NA	NA	NA
BBF19087.1\|2079024_2079243_-	Qin prophage protein	NA	NA	NA	NA
BBF19088.1\|2079272_2079401_-	predicted protein	NA	NA	NA	NA
BBF19089.1\|2079402_2079639_-	Qin prophage	M4QQ57	Salicola_phage	4.6e-07	53.2
BBF19090.1\|2079823_2080243_-	phage repressor protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
BBF19091.1\|2080343_2080625_+	uncharacterized protein	K7PHA1	Enterobacteria_phage	8.5e-24	72.6
BBF19092.1\|2080608_2081034_+	phage regulatory protein	NA	NA	NA	NA
BBF19093.1\|2081105_2082170_+	replication protein	A0A088CD36	Shigella_phage	7.9e-62	64.6
BBF19094.1\|2082210_2082633_+	phage protein	A0A0U2QQN3	Escherichia_phage	3.3e-64	91.4
BBF19095.1\|2082690_2083047_+	putative bacteriophage protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
BBF19096.1\|2083140_2083323_+	putative uncharacterized protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
BBF19097.1\|2083315_2083492_+	uncharacterized protein	A0A2R2X2A8	Escherichia_phage	9.7e-26	93.1
BBF19098.1\|2084413_2084569_+	prophage maintenance protein	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
BBF19099.1\|2085307_2086357_+	Qin prophage	U5P0K4	Shigella_phage	2.9e-109	54.6
BBF19100.1\|2086369_2086726_+	Holliday junction resolvase	V5URS4	Shigella_phage	1.8e-34	61.8
BBF19101.1\|2086740_2087562_+	late gene regulator	K7P7B9	Enterobacteria_phage	6.1e-78	58.6
BBF19102.1\|2088866_2089202_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
BBF19103.1\|2089462_2089651_+	YjhS	H6WZJ9	Escherichia_phage	7.2e-27	95.2
BBF19104.1\|2089647_2089809_+	YjhS	Q08JA2	Stx2-converting_phage	2.0e-14	89.1
BBF19105.1\|2089958_2090174_+\|holin	holin protein	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
BBF19106.1\|2090178_2090523_+	phage protein	K7PGU6	Enterobacteria_phage	7.0e-36	92.9
BBF19107.1\|2090488_2090761_-	ybl58	NA	NA	NA	NA
BBF19108.1\|2090866_2091400_+	endolysin	K7PLY1	Enterobacteria_phage	4.8e-100	96.0
BBF19109.1\|2091396_2091864_+	endopeptidase	Q9AZ06	Salmonella_phage	5.0e-69	89.7
BBF19110.1\|2092206_2092731_+	rha protein	G8C7W4	Escherichia_phage	2.9e-86	93.6
BBF19111.1\|2093033_2093444_-	DLP12 prophage protein	C6ZCX4	Enterobacteria_phage	2.7e-55	77.8
BBF19112.1\|2093501_2093735_-	ynfO qin prophage	A0A0K2FIR8	Escherichia_phage	4.3e-21	94.4
BBF19113.1\|2094128_2094638_+\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	3.6e-12	32.7
BBF19114.1\|2094609_2096538_+\|terminase	terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	3.6e-262	66.4
BBF19115.1\|2096521_2096728_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
BBF19116.1\|2096724_2098317_+\|portal	portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
2097901:2097920	attL	NA	NA	NA	NA
BBF19117.1\|2098306_2099812_+\|head,tail	head-tail preconnector protein GP5	A0A2I6TC87	Escherichia_phage	3.6e-100	53.7
BBF19118.1\|2099848_2100196_+\|head	head-DNA stabilization protein	A0A2R9YJN3	Escherichia_phage	2.9e-21	55.9
BBF19119.1\|2100253_2101282_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.6e-114	61.9
BBF19120.1\|2101333_2101717_+	DNA packaging protein	NA	NA	NA	NA
BBF19121.1\|2101709_2102063_+\|head,tail	head-tail adaptor	A0A0K2FJB7	Enterobacteria_phage	1.1e-41	70.1
BBF19122.1\|2102078_2102612_+\|tail	minor tail protein	A0A2R9YJK4	Escherichia_phage	1.2e-55	64.1
BBF19123.1\|2102608_2103004_+\|tail	minor tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
BBF19124.1\|2103011_2103758_+\|tail	major tail protein V	Q687F6	Enterobacteria_phage	8.7e-124	93.4
BBF19125.1\|2103776_2104208_+\|tail	minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
BBF19126.1\|2104234_2104648_+\|tail	minor tail protein	S5MDP5	Escherichia_phage	1.6e-42	82.2
BBF19127.1\|2104628_2107190_+\|tail	tail length tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	90.0
BBF19128.1\|2107186_2107516_+\|tail	phage minor tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
BBF19129.1\|2107515_2108214_+\|tail	minor tail protein	S5M7Q4	Escherichia_phage	7.6e-130	97.0
BBF19130.1\|2108219_2108963_+\|tail	tail assembly protein	K7PLW1	Enterobacteria_phage	8.3e-143	93.4
BBF19131.1\|2108926_2109541_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	5.5e-92	92.1
BBF19132.1\|2109998_2113577_+	host specificity protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.5
BBF19133.1\|2113644_2114244_+	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	4.4e-102	92.5
BBF19134.1\|2114395_2116459_+\|tail	putative phage tail fiber protein	A0A1X7QGG5	Escherichia_phage	3.7e-148	62.7
BBF19135.1\|2116455_2116734_+	uncharacterized protein	A0A0E3JSQ1	Enterobacteria_phage	1.0e-21	50.5
BBF19136.1\|2116743_2117037_+	predicted protein	NA	NA	NA	NA
BBF19137.1\|2117229_2117886_-	unknown protein encoded within prophage	NA	NA	NA	NA
BBF19138.1\|2117954_2118221_+\|tail	tail fiber chaperone	K7PMH7	Enterobacteria_phage	2.3e-18	78.3
BBF19139.1\|2118452_2119316_-	potB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
BBF19140.1\|2119299_2120436_-	spermidine/putrescine import ATP-binding protein potA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
BBF19141.1\|2120685_2121912_+	peptidase T	NA	NA	NA	NA
BBF19142.1\|2121960_2123082_-	cupin 4 family protein	NA	NA	NA	NA
BBF19143.1\|2123157_2124618_-	sensor protein PhoQ	NA	NA	NA	NA
BBF19144.1\|2124617_2125289_-	virulence transcriptional regulatory protein phoP	NA	NA	NA	NA
BBF19145.1\|2125457_2126828_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	7.9e-107	44.9
BBF19146.1\|2126831_2127479_-	ycfC protein	NA	NA	NA	NA
BBF19147.1\|2127508_2128660_-\|tRNA	tRNA-specific 2-thiouridylase mnmA	NA	NA	NA	NA
BBF19148.1\|2128668_2129130_-	nudix hydrolase ymfB	NA	NA	NA	NA
BBF19149.1\|2129139_2129673_-	ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA
BBF19150.1\|2129964_2131215_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
BBF19151.1\|2131328_2132471_-\|integrase	integrase	Q77Z02	Phage_21	3.6e-206	100.0
BBF19152.1\|2132460_2132697_-	excisionase	NA	NA	NA	NA
BBF19153.1\|2132836_2133076_-	predicted protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
BBF19154.1\|2133059_2133386_-	phage related protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
BBF19155.1\|2133705_2133921_-	predicted protein	A0A1I9LJM7	Stx_converting_phage	5.5e-31	95.8
BBF19156.1\|2133997_2134189_-	phage protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
BBF19157.1\|2134340_2135021_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
BBF19158.1\|2135017_2135803_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
BBF19159.1\|2135808_2136105_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
BBF19160.1\|2136180_2136387_-	prophage Kil protein	K7P6H3	Enterobacteria_phage	3.5e-27	85.1
BBF19161.1\|2137289_2138315_-	uncharacterized protein	NA	NA	NA	NA
BBF19162.1\|2138408_2139164_-	regulatory protein CI bacteriophage origin	Q76H56	Enterobacteria_phage	1.8e-92	75.0
BBF19163.1\|2139202_2139433_+	predicted protein	A0A2H4FNF3	Salmonella_phage	2.1e-20	66.7
BBF19164.1\|2139502_2140042_+	regulatory protein CII from bacteriophage origin	M9NZI6	Enterobacteria_phage	4.0e-62	66.7
BBF19165.1\|2140038_2141058_+	phage replication protein O	M1FN81	Enterobacteria_phage	1.8e-111	68.0
BBF19166.1\|2141054_2141756_+	replication protein	A0A0P0ZD31	Stx2-converting_phage	5.1e-126	97.4
BBF19167.1\|2142006_2145915_+	attaching and effacing protein, pathogenesis factor	NA	NA	NA	NA
BBF19168.1\|2145951_2146995_-	alpha/beta hydrolase fold domain protein	NA	NA	NA	NA
BBF19169.1\|2147442_2147898_+	phage protein	I6PD71	Cronobacter_phage	1.2e-59	66.9
BBF19170.1\|2147897_2148068_+	prophage protein NinE	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
BBF19171.1\|2148060_2148351_+	82 prophage-derived protein ybcO	K7PGZ6	Enterobacteria_phage	1.3e-46	93.8
BBF19172.1\|2148347_2148710_+	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	7.3e-60	95.7
BBF19173.1\|2148932_2149316_+	antitermination protein Q	A0A088CD47	Shigella_phage	2.0e-55	82.5
BBF19174.1\|2149504_2150587_-	outer membrane porin protein from phage origin	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
BBF19175.1\|2151176_2151392_+\|lysis	DLP12 prophage phage lysis protein	A5LH82	Enterobacteria_phage	9.0e-34	100.0
BBF19176.1\|2151396_2151711_+	bacteriophage protein	K7PGU6	Enterobacteria_phage	8.3e-52	99.0
BBF19177.1\|2151707_2151947_-	predicted protein	NA	NA	NA	NA
BBF19178.1\|2152081_2152615_+	endolysin	K7PLY1	Enterobacteria_phage	5.8e-98	94.9
BBF19179.1\|2152611_2153073_+\|lysis	bacteriophage lysis protein	A0A0K2FJD0	Enterobacteria_phage	2.3e-74	97.4
BBF19180.1\|2153104_2153398_-	Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
BBF19181.1\|2153965_2154205_+	partial tonB-like membrane protein encoded within prophage	H6WZK5	Escherichia_phage	1.5e-29	78.7
BBF19182.1\|2154411_2154594_+	conserved hypothetical protein	NA	NA	NA	NA
BBF19183.1\|2155157_2155703_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
BBF19184.1\|2155857_2157603_+\|terminase	terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
BBF19185.1\|2157599_2157806_+\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
BBF19186.1\|2157802_2159404_+\|portal	portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	99.2
2158988:2159007	attR	NA	NA	NA	NA
BBF19187.1\|2159384_2160716_+\|capsid	minor capsid protein C	A0A0K2FI53	Enterobacteria_phage	3.0e-228	96.8
BBF19188.1\|2160725_2161109_+\|head	head-DNA stabilization protein	A0A2R9YJN3	Escherichia_phage	7.7e-44	89.7
BBF19189.1\|2161112_2162138_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	6.4e-186	96.2
BBF19190.1\|2162179_2162575_+	DNA packaging protein	A0A2R9YJP4	Escherichia_phage	2.6e-55	90.9
BBF19191.1\|2162586_2162940_+\|head,tail	head-tail adaptor	A0A2R9YJJ5	Escherichia_phage	1.9e-60	96.6
BBF19192.1\|2162950_2163529_+\|tail	minor tail protein	A0A2R9YJK4	Escherichia_phage	6.8e-76	95.3
BBF19193.1\|2163525_2163921_+\|tail	minor tail protein	A0A0K2FIF4	Enterobacteria_phage	1.3e-70	99.2
BBF19194.1\|2163928_2164669_+\|tail	major tail protein	A0A0K2FJ05	Enterobacteria_phage	1.1e-131	98.8
BBF19195.1\|2164684_2165107_+\|tail	minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	95.0
BBF19196.1\|2165088_2165523_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	7.6e-64	99.2
BBF19197.1\|2165515_2168083_+\|tail	tail length tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	91.9
BBF19198.1\|2168079_2168409_+\|tail	minor tail protein	A0A2R9YJM0	Escherichia_phage	1.6e-58	100.0
BBF19199.1\|2168408_2169107_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.6e-132	98.7
BBF19200.1\|2169220_2169856_+\|tail	tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	2.4e-127	97.6
BBF19201.1\|2169753_2170425_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.1e-104	99.1
BBF19202.1\|2170485_2173968_+	fibronectin type III domain-containing protein	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
BBF19203.1\|2174026_2176087_+\|tail	putative phage tail fiber protein	A0A0E3M194	Enterobacteria_phage	3.3e-125	53.5
BBF19204.1\|2176083_2176362_+	predicted protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	57.6

DBSCAN-SWA_7

2225733 : 2252206

Shigella_phage(28.57%)

integrase,transposase

attL 2218817:2218831|attR 2257913:2257927

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2218817:2218831	attL	NA	NA	NA	NA
BBF19265.1\|2225733_2226657_-\|transposase	IS102 transposase	Q1MVF0	Enterobacteria_phage	1.6e-172	97.1
BBF19266.1\|2227249_2229007_+	RNA-directed DNA polymerase	NA	NA	NA	NA
BBF19267.1\|2229028_2229196_+	uncharacterized protein	NA	NA	NA	NA
BBF19268.1\|2229253_2230381_+	uncharacterized protein	NA	NA	NA	NA
BBF19269.1\|2230377_2230893_+	phage protein	NA	NA	NA	NA
BBF19270.1\|2230894_2232781_+	uncharacterized protein	NA	NA	NA	NA
BBF19271.1\|2233348_2233594_-	uncharacterized protein	NA	NA	NA	NA
BBF19272.1\|2233660_2233996_-	uncharacterized protein	NA	NA	NA	NA
BBF19273.1\|2234026_2234386_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
BBF19274.1\|2234400_2234928_-	uncharacterized protein	NA	NA	NA	NA
BBF19275.1\|2234939_2235209_-	transcriptional regulator	A0A0C4UQU0	Shigella_phage	3.4e-14	58.7
BBF19276.1\|2235330_2235819_+	phage protein	NA	NA	NA	NA
BBF19277.1\|2236143_2236566_+	uncharacterized protein	NA	NA	NA	NA
BBF19278.1\|2236607_2237147_+	uncharacterized protein	NA	NA	NA	NA
BBF19279.1\|2237148_2237601_+	putative phageDNA repair protein	NA	NA	NA	NA
BBF19280.1\|2237662_2238577_+\|integrase	phage integrase	A0A1B1P7C7	Bacillus_phage	4.3e-08	28.5
BBF19281.1\|2238563_2239178_-	uncharacterized protein	NA	NA	NA	NA
BBF19282.1\|2239400_2239598_+	phage protein	A0A1V0E8E5	Vibrio_phage	2.5e-06	43.9
BBF19283.1\|2239599_2240067_+	uncharacterized protein	NA	NA	NA	NA
BBF19284.1\|2240154_2241009_+	uncharacterized protein	NA	NA	NA	NA
BBF19285.1\|2241585_2242983_+	uncharacterized protein	NA	NA	NA	NA
BBF19286.1\|2243160_2243358_+\|integrase	integrase, catalytic region	NA	NA	NA	NA
BBF19287.1\|2243979_2246637_+	predicted membrane protein	NA	NA	NA	NA
BBF19288.1\|2246633_2246846_+	transmembrane protein	NA	NA	NA	NA
BBF19289.1\|2246859_2248029_+	transmembrane protein	NA	NA	NA	NA
BBF19290.1\|2248215_2248407_-	hypothetical protein	NA	NA	NA	NA
BBF19291.1\|2248511_2248709_+	uncharacterized protein	NA	NA	NA	NA
BBF19292.1\|2248910_2249162_+\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	7.8e-37	92.8
BBF19293.1\|2249293_2249467_+	permease	NA	NA	NA	NA
BBF19294.1\|2249784_2250276_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.1e-54	63.5
BBF19295.1\|2250635_2250920_-\|transposase	ISEc14 transposase A	NA	NA	NA	NA
BBF19296.1\|2251030_2252206_-\|integrase	phage integrase	A0A1B0VMI6	Pseudomonas_phage	1.7e-73	39.4
2257913:2257927	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2543438 : 2552265

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF19555.1\|2543438_2544653_-	starvation sensing protein	Q6A202	Oenococcus_phage	8.2e-47	29.2
BBF19556.1\|2544858_2545185_-	membrane protein ynfA	A0A218MNG8	uncultured_virus	9.9e-24	55.6
BBF19557.1\|2545319_2545661_+	ynfB	NA	NA	NA	NA
BBF19558.1\|2545695_2546256_+	spermidine N(1)-acetyltransferase	NA	NA	NA	NA
BBF19559.1\|2546258_2547005_-	lipoprotein	NA	NA	NA	NA
BBF19560.1\|2547076_2547382_+	ynfD protein	NA	NA	NA	NA
BBF19561.1\|2547580_2550007_+	oxidoreductase subunit	A0A077SK27	Escherichia_phage	1.7e-213	49.2
BBF19562.1\|2550064_2550829_+	oxidoreductase subunit	A0A077SK27	Escherichia_phage	8.8e-47	48.1
BBF19563.1\|2550825_2551563_+	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.6e-45	41.1
BBF19564.1\|2551647_2552265_+	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	9.5e-76	59.6

DBSCAN-SWA_9

2676934 : 2723942

Enterobacteria_phage(74.42%)

integrase,terminase,tRNA,capsid,plate,portal,tail,holin,protease

attL 2679337:2679361|attR 2716583:2716607

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF19682.1\|2676934_2677684_-	vitamin B12 transporter ATPase	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	28.2
BBF19683.1\|2677683_2678235_-	btuE	NA	NA	NA	NA
BBF19684.1\|2678297_2679278_-	vitamin B12 ABC transporter permease	NA	NA	NA	NA
2679337:2679361	attL	NA	NA	NA	NA
BBF19685.1\|2679467_2679863_-	uncharacterized protein	NA	NA	NA	NA
BBF19686.1\|2679873_2680809_-\|integrase	integrase	A0A0M4RTQ0	Salmonella_phage	5.6e-80	50.8
BBF19687.1\|2680897_2681206_-	repressor protein	A0A0M5M1I9	Salmonella_phage	1.3e-22	53.1
BBF19688.1\|2681302_2681581_+	DNA-binding protein	NA	NA	NA	NA
BBF19689.1\|2681595_2681934_+	uncharacterized protein	A0A0A7NV42	Enterobacteria_phage	1.9e-49	84.5
BBF19690.1\|2681944_2682223_+	uncharacterized protein	A0A0A7NRX5	Enterobacteria_phage	9.9e-33	77.2
BBF19691.1\|2682234_2682477_+	uncharacterized protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
BBF19692.1\|2682674_2682878_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	9.5e-25	80.6
BBF19693.1\|2682874_2683093_+	uncharacterized protein	A0A0A7NRX6	Enterobacteria_phage	6.6e-08	56.2
BBF19694.1\|2683201_2683591_+	uncharacterized protein	NA	NA	NA	NA
BBF19695.1\|2683587_2686428_+	replication protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	88.4
BBF19696.1\|2686504_2687464_+	plasmid partition protein	A0A0A7NPX4	Enterobacteria_phage	1.1e-179	99.4
BBF19697.1\|2687468_2687780_+	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	7.2e-48	94.2
BBF19698.1\|2688158_2689241_+	ATPase, AAA-superfamily	R4TQL5	Phaeocystis_globosa_virus	8.4e-19	29.5
BBF19699.1\|2689237_2691442_+\|protease	proteases	NA	NA	NA	NA
BBF19700.1\|2691947_2692994_-\|portal	portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
BBF19701.1\|2692993_2694745_-\|terminase	phage terminase ATPase subunit	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.9
BBF19702.1\|2694899_2695736_+	scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	1.1e-146	97.8
BBF19703.1\|2695759_2696812_+\|capsid	phage major capsid protein	A0A0A7NQ82	Enterobacteria_phage	1.9e-193	97.1
BBF19704.1\|2696857_2697658_+\|terminase	phage terminase endonuclease subunit	A0A0A7NPX9	Enterobacteria_phage	6.6e-130	91.4
BBF19705.1\|2697760_2698255_+\|capsid	capsid completion protein	A0A0A7NPU2	Enterobacteria_phage	6.6e-88	98.8
BBF19706.1\|2698254_2698455_+\|tail	tail component protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
BBF19707.1\|2698457_2698781_+\|holin	holin protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
BBF19708.1\|2698777_2699170_+	endolysin	A0A0A7NQ86	Enterobacteria_phage	9.9e-71	99.2
BBF19709.1\|2699166_2699574_+	prophage lipoprotein	A0A0A7NPY2	Enterobacteria_phage	2.2e-65	97.8
BBF19710.1\|2699711_2700179_+\|tail	P2 phage tail completion protein R	A0A0A7NPU6	Enterobacteria_phage	2.6e-86	100.0
BBF19711.1\|2700162_2700807_+\|tail	phage tail completion protein S	A0A0A7NV60	Enterobacteria_phage	5.4e-114	99.1
BBF19712.1\|2700803_2701385_+\|plate	baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	4.3e-102	97.4
BBF19713.1\|2701381_2701732_+\|plate	phage baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.5e-59	99.1
BBF19714.1\|2701735_2702632_+\|plate	baseplate assembly protein J	A0A0A7NPY5	Enterobacteria_phage	3.9e-155	97.7
BBF19715.1\|2702624_2703152_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	2.8e-84	88.3
BBF19716.1\|2703162_2705898_+\|tail	phage tail fiber protein gpH	Q858V4	Yersinia_virus	0.0e+00	80.1
BBF19717.1\|2705901_2706429_+\|tail	tail fiber assembly protein	A0A077SK10	Escherichia_phage	3.9e-86	90.9
BBF19718.1\|2706682_2707171_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-86	100.0
BBF19719.1\|2707183_2709991_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.9
BBF19720.1\|2709977_2710214_-\|tail	phage tail protein	A0A0A7NQ96	Enterobacteria_phage	4.3e-21	94.1
BBF19721.1\|2710141_2710516_-\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.0e-37	73.2
BBF19722.1\|2710571_2711084_-\|tail	tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.1e-92	99.4
BBF19723.1\|2711083_2712268_-\|tail	tail sheath protein	A0A0A7NV69	Enterobacteria_phage	1.5e-226	99.7
BBF19724.1\|2712425_2713535_+\|tail	phage tail protein	A0A0A7NQ97	Enterobacteria_phage	1.0e-200	97.0
BBF19725.1\|2713885_2715469_+	putative uncharacterized protein	E5E3X3	Burkholderia_phage	2.9e-161	54.9
BBF19726.1\|2716177_2716318_+	prophage host toxic membrane protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
BBF19727.1\|2716624_2716924_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
2716583:2716607	attR	NA	NA	NA	NA
BBF19728.1\|2716928_2719316_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
BBF19729.1\|2719330_2720314_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-33	38.5
BBF19730.1\|2720764_2721121_-	50S ribosomal protein L20	NA	NA	NA	NA
BBF19731.1\|2721173_2721371_-	50S ribosomal protein L35	NA	NA	NA	NA
BBF19732.1\|2721467_2721902_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.1e-13	33.8
BBF19733.1\|2722013_2723942_-\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	1.6e-129	37.1

DBSCAN-SWA_10

2803831 : 2858652

Bacillus_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF19815.1\|2803831_2804527_-\|protease	glycoprotease	NA	NA	NA	NA
BBF19816.1\|2804584_2806495_-	ATP-dependent helicase	A0A127AW80	Bacillus_phage	1.7e-91	32.2
BBF19817.1\|2806623_2806971_+	endoribonuclease L-PSP	NA	NA	NA	NA
BBF19818.1\|2807392_2807692_+	uncharacterized protein yoaC	NA	NA	NA	NA
BBF19819.1\|2807811_2807991_-	yoaH	NA	NA	NA	NA
BBF19820.1\|2808064_2809426_+	aminodeoxychorismate synthase subunit I	S4VT78	Pandoravirus	1.7e-40	33.4
BBF19821.1\|2809429_2810008_+	NUDIX hydrolase	NA	NA	NA	NA
BBF19822.1\|2810191_2811556_+	L-serine deaminase I	NA	NA	NA	NA
BBF19823.1\|2811686_2813285_+	phosphodiesterase	NA	NA	NA	NA
BBF19824.1\|2813288_2814845_-	integral membrane protein TerC	A0A0R6PEZ3	Moraxella_phage	1.7e-41	45.4
BBF19825.1\|2815308_2816280_+	PTS system mannose-specific EIIAB component	NA	NA	NA	NA
BBF19826.1\|2816342_2817143_+	PTS system mannose-specific transporter subunit IIC	NA	NA	NA	NA
BBF19827.1\|2817155_2818007_+	mannose permease IID component	NA	NA	NA	NA
BBF19828.1\|2818061_2818520_+	membrane protein	NA	NA	NA	NA
BBF19829.1\|2818948_2819515_+	inner membrane protein	NA	NA	NA	NA
BBF19830.1\|2819511_2820321_-	23S rRNA methyltransferase A	NA	NA	NA	NA
BBF19831.1\|2820486_2820696_-	cold shock-like protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
BBF19832.1\|2821521_2821809_-	yebO protein	NA	NA	NA	NA
BBF19833.1\|2822185_2822425_+	yobH protein	NA	NA	NA	NA
BBF19834.1\|2822568_2823360_-	transcriptional regulator protein	NA	NA	NA	NA
BBF19835.1\|2823536_2824910_+	transporter	NA	NA	NA	NA
BBF19836.1\|2824955_2825837_-\|protease	protease htpX	NA	NA	NA	NA
BBF19837.1\|2826028_2828077_-\|protease	carboxy-terminal protease	A0A0R6PIZ1	Moraxella_phage	6.8e-86	33.5
BBF19838.1\|2828096_2828795_-	ProP osmoprotactant transporter activator protein	NA	NA	NA	NA
BBF19839.1\|2828891_2829389_-	GAF domain-containing protein	NA	NA	NA	NA
BBF19840.1\|2829563_2830802_+	inner membrane protein	NA	NA	NA	NA
BBF19841.1\|2830770_2833404_+	mce-like protein	NA	NA	NA	NA
BBF19842.1\|2833477_2834923_+	rRNA cytosine-C5-methyltransferase	NA	NA	NA	NA
BBF19843.1\|2835039_2835276_+	hypothetical protein	NA	NA	NA	NA
BBF19844.1\|2835296_2835572_+	hypothetical protein	NA	NA	NA	NA
BBF19845.1\|2835572_2835983_-	serine/threonine protein phosphatase	Q71TJ1	Escherichia_phage	2.1e-26	43.2
BBF19846.1\|2836623_2836965_-	yebY protein	NA	NA	NA	NA
BBF19847.1\|2836977_2837850_-	copper resistance D domain-containing protein	NA	NA	NA	NA
BBF19848.1\|2837853_2838228_-	protein yobA precursor	NA	NA	NA	NA
BBF19849.1\|2838366_2838597_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
BBF19850.1\|2838698_2839355_+	hydrolase	NA	NA	NA	NA
BBF19851.1\|2839378_2840041_+	exodeoxyribonuclease 10	Q6UAU3	Klebsiella_phage	2.0e-07	41.6
BBF19852.1\|2840037_2842098_-\|protease	protease II	NA	NA	NA	NA
BBF19853.1\|2842306_2842966_-	inner membrane protein	NA	NA	NA	NA
BBF19854.1\|2843292_2843649_-	yebF protein	NA	NA	NA	NA
BBF19855.1\|2843715_2844006_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
BBF19856.1\|2844139_2845318_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
BBF19857.1\|2845373_2846015_-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA
BBF19858.1\|2846051_2847863_-	phosphogluconate dehydratase	NA	NA	NA	NA
BBF19859.1\|2847825_2847984_+	putative uncharacterized protein	NA	NA	NA	NA
BBF19860.1\|2848097_2849573_-	glucose-6-phosphate 1-dehydrogenase	H6WFS4	Cyanophage	4.4e-79	37.5
BBF19861.1\|2849738_2849888_-	predicted protein	NA	NA	NA	NA
BBF19862.1\|2849910_2850780_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
BBF19863.1\|2850907_2852350_+	pyruvate kinase	NA	NA	NA	NA
BBF19864.1\|2852481_2853453_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
BBF19865.1\|2853571_2854894_-	peptidase	A8ATH6	Listeria_phage	1.2e-14	40.9
BBF19866.1\|2854909_2855857_-	high-affinity zinc transporter periplasmic component	NA	NA	NA	NA
BBF19867.1\|2855920_2856676_+	zinc import ATP-binding protein znuC	G3M9Y6	Bacillus_virus	1.3e-18	28.3
BBF19868.1\|2856672_2857458_+	znuB	NA	NA	NA	NA
BBF19869.1\|2857651_2858254_-\|transposase	transposase ORF B, IS3 family, IS150 group	A0A1B1P773	Bacillus_phage	1.7e-61	56.8
BBF19870.1\|2858478_2858652_-\|transposase	transposase ORF A, IS1397	NA	NA	NA	NA

DBSCAN-SWA_11

2863388 : 2929668

Escherichia_phage(27.59%)

terminase,tRNA,head,capsid,plate,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF19877.1\|2863388_2865161_-\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
BBF19878.1\|2865470_2866037_+	hydrolase	NA	NA	NA	NA
BBF19879.1\|2866033_2866852_+	hypothetical protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
BBF19880.1\|2866904_2867300_+	inner membrane protein	NA	NA	NA	NA
BBF19881.1\|2867340_2868084_+	methyltransferase	F5B419	Synechococcus_phage	4.6e-24	30.0
BBF19882.1\|2868080_2869052_+	S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA
BBF19883.1\|2869087_2871517_-	biotin sulfoxide reductase	NA	NA	NA	NA
BBF19884.1\|2871541_2872642_-	cytochrome c-type protein	NA	NA	NA	NA
BBF19885.1\|2873029_2873776_-	copper homeostasis protein cutC	NA	NA	NA	NA
BBF19886.1\|2873789_2874362_-	metal-binding enzyme	NA	NA	NA	NA
BBF19887.1\|2874571_2876305_+\|tRNA	arginyl-tRNA synthetase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
BBF19888.1\|2876357_2876750_-	flagellar protein FlhE	NA	NA	NA	NA
BBF19889.1\|2876749_2878828_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
BBF19890.1\|2878820_2879969_-	flagellar biosynthetic protein FlhB	NA	NA	NA	NA
BBF19891.1\|2880157_2880802_-	chemotaxis regulator protein	NA	NA	NA	NA
BBF19892.1\|2880812_2881202_-	chemotaxis regulator transmitting signal to flagellar motor component	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
BBF19893.1\|2881216_2882266_-	chemotaxis-specific methylesterase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
BBF19894.1\|2882268_2883129_-	chemotaxis protein methyltransferase	NA	NA	NA	NA
BBF19895.1\|2883419_2885081_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
BBF19896.1\|2885225_2885729_-	purine-binding chemotaxis protein	NA	NA	NA	NA
BBF19897.1\|2885749_2887708_-	chemotaxis protein	NA	NA	NA	NA
BBF19898.1\|2887718_2888645_-	flagellar motor protein	NA	NA	NA	NA
BBF19899.1\|2888641_2889529_-	flagellar motor protein MotA	NA	NA	NA	NA
BBF19900.1\|2889655_2890234_-	flagellar transcriptional activator flhC	NA	NA	NA	NA
BBF19901.1\|2890236_2890587_-	transcriptional activator flhD	NA	NA	NA	NA
BBF19902.1\|2891366_2891795_+	universal stress protein	NA	NA	NA	NA
BBF19903.1\|2891801_2893226_-	trehalose-6-phosphate synthase	NA	NA	NA	NA
BBF19904.1\|2893200_2894001_-	trehalose-phosphatase	NA	NA	NA	NA
BBF19905.1\|2894167_2895154_-	L-arabinose transport system permease protein araH	NA	NA	NA	NA
BBF19906.1\|2895168_2896683_-	L-arabinose transport ATP-binding protein	A0A285PWH2	Cedratvirus	1.3e-12	29.7
BBF19907.1\|2896752_2897742_-	L-arabinose-binding periplasmic protein	NA	NA	NA	NA
BBF19908.1\|2898538_2899042_+	ferritin-like protein	NA	NA	NA	NA
BBF19909.1\|2899119_2899371_-	yecJ protein	NA	NA	NA	NA
BBF19910.1\|2900330_2900828_+	ferritin-1	NA	NA	NA	NA
BBF19911.1\|2900865_2901105_-	yecH protein	NA	NA	NA	NA
BBF19912.1\|2901295_2902507_+	tyrosine-specific transport protein	NA	NA	NA	NA
BBF19913.1\|2902557_2903223_-	metal-binding protein	NA	NA	NA	NA
BBF19914.1\|2903694_2904114_-	uncharacterized protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
BBF19915.1\|2904280_2905324_-	uncharacterized protein	R9TNM7	Vibrio_phage	2.0e-33	28.5
BBF19916.1\|2905327_2905540_-	uncharacterized protein	NA	NA	NA	NA
BBF19917.1\|2905713_2906136_-	uncharacterized protein	E5FFG4	Burkholderia_phage	1.1e-14	37.6
BBF19918.1\|2906138_2907779_-	uncharacterized protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
BBF19919.1\|2907887_2908169_-	uncharacterized protein	NA	NA	NA	NA
BBF19920.1\|2908181_2908694_-\|tail	phage major tail tube protein	NA	NA	NA	NA
BBF19921.1\|2908711_2910214_-\|tail	major tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
BBF19922.1\|2910210_2910600_-	uncharacterized protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
BBF19923.1\|2910599_2911784_-	Uncharacterized protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
BBF19924.1\|2911776_2912403_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
BBF19925.1\|2912405_2913326_-\|plate	baseplate assembly protein J	D5LGZ3	Escherichia_phage	8.3e-68	47.8
BBF19926.1\|2913322_2913655_-\|plate	baseplate assembly protein W	Q8H9N4	Vibrio_phage	1.2e-19	51.1
BBF19927.1\|2913666_2914569_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
BBF19928.1\|2914549_2915086_-	uncharacterized protein	NA	NA	NA	NA
BBF19929.1\|2915082_2915763_-	uncharacterized protein	NA	NA	NA	NA
BBF19930.1\|2915794_2916175_-	uncharacterized protein	NA	NA	NA	NA
BBF19931.1\|2916171_2916591_-	uncharacterized protein	NA	NA	NA	NA
BBF19932.1\|2916625_2917660_-\|capsid	phage major capsid protein E	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
BBF19933.1\|2917718_2918048_-\|head	bacteriophage lambda head decoration protein D	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
BBF19934.1\|2918047_2919208_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.5e-90	54.0
BBF19935.1\|2919354_2920929_-\|portal	portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
BBF19936.1\|2920925_2921159_-	uncharacterized protein	NA	NA	NA	NA
BBF19937.1\|2921158_2923021_-\|terminase	phage terminase large subunit gpA	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
BBF19938.1\|2923007_2923574_-	uncharacterized protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
BBF19939.1\|2923942_2924188_+	uncharacterized protein	NA	NA	NA	NA
BBF19940.1\|2924449_2924929_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
BBF19941.1\|2924928_2925201_-	uncharacterized protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
BBF19942.1\|2925200_2925584_-	uncharacterized protein	NA	NA	NA	NA
BBF19943.1\|2925696_2926368_-	phage antitermination protein Q	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
BBF19944.1\|2926367_2926661_-	bacteriophage protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
BBF19945.1\|2926657_2927254_-	gifsy-2 prophage protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
BBF19946.1\|2927331_2927511_-	uncharacterized protein	NA	NA	NA	NA
BBF19947.1\|2927662_2928304_-	uncharacterized protein	NA	NA	NA	NA
BBF19948.1\|2928547_2928781_+	uncharacterized protein	NA	NA	NA	NA
BBF19949.1\|2929179_2929668_+	uncharacterized protein	A0A142KB62	Gordonia_phage	6.4e-27	42.7

DBSCAN-SWA_12

2933730 : 2945899

Pectobacterium_phage(66.67%)

integrase

attL 2943760:2943774|attR 2950512:2950526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF19954.1\|2933730_2934519_-	antirepressor	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
BBF19955.1\|2934791_2935013_-	uncharacterized protein	NA	NA	NA	NA
BBF19956.1\|2935200_2935425_-	uncharacterized protein	NA	NA	NA	NA
BBF19957.1\|2935421_2935733_-	uncharacterized protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
BBF19958.1\|2935729_2935966_-	uncharacterized protein	NA	NA	NA	NA
BBF19959.1\|2935967_2936378_-	uncharacterized protein	NA	NA	NA	NA
BBF19960.1\|2936416_2937832_-	putative replication protein P	H9C165	Pectobacterium_phage	6.6e-173	66.7
BBF19961.1\|2937821_2938577_-	putative replication protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
BBF19962.1\|2938573_2938798_-	adenylosuccinate synthase	H9C163	Pectobacterium_phage	6.1e-17	54.1
BBF19963.1\|2938837_2939314_-	uncharacterized protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
BBF19964.1\|2939372_2939603_-	antirepressor protein Cro	H6WRX5	Salmonella_phage	1.5e-21	63.2
BBF19965.1\|2939722_2940115_+	uncharacterized protein	A0A1B5FPF4	Escherichia_phage	6.3e-09	49.1
BBF19966.1\|2941125_2941446_+	uncharacterized protein	NA	NA	NA	NA
BBF19967.1\|2941476_2943693_+	uncharacterized protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
BBF19968.1\|2943689_2944259_+	Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
2943760:2943774	attL	NA	NA	NA	NA
BBF19969.1\|2944258_2944441_+	uncharacterized protein	NA	NA	NA	NA
BBF19970.1\|2944650_2944914_+	uncharacterized protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
BBF19971.1\|2944918_2945899_+\|integrase	integrase	H9C152	Pectobacterium_phage	2.1e-122	63.5
2950512:2950526	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2987482 : 3071867

Bacillus_phage(36.36%)

integrase,holin,transposase

attL 2998447:2998462|attR 3075917:3075932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF20021.1\|2987482_2987659_+\|holin	glucose-methanol-choline oxidoreductase	NA	NA	NA	NA
BBF20022.1\|2988376_2989492_+	outer membrane protein F	Q1MVN1	Enterobacteria_phage	1.4e-90	47.2
BBF20023.1\|2990084_2990936_+	chaperone protein HchA	NA	NA	NA	NA
BBF20024.1\|2991043_2992402_-	sensory kinase in two-component regulatory system with YedW	NA	NA	NA	NA
BBF20025.1\|2992401_2993184_-	DNA-binding response regulator in two-component system with YedV	W8CYM9	Bacillus_phage	6.2e-32	35.2
BBF20026.1\|2993205_2993619_+	hydroxyisourate hydrolase	NA	NA	NA	NA
BBF20027.1\|2993727_2994732_+	membrane-anchored, periplasmic TMAO, DMSO reductase	NA	NA	NA	NA
BBF20028.1\|2994732_2995368_+	membrane protein yedZ	NA	NA	NA	NA
BBF20029.1\|2995451_2996054_-\|transposase	transposase ORF B, IS3 family, IS150 group	A0A1B1P773	Bacillus_phage	1.7e-61	56.8
BBF20030.1\|2996278_2996452_-\|transposase	transposase ORF A, IS1397	NA	NA	NA	NA
BBF20031.1\|2997060_2997711_+	YodA domain-containing protein	NA	NA	NA	NA
2998447:2998462	attL	NA	NA	NA	NA
BBF20032.1\|2998677_2999361_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
BBF20033.1\|2999698_3000961_+\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	2.6e-72	38.5
BBF20034.1\|3001154_3002459_-	salicylate synthase Irp9	NA	NA	NA	NA
BBF20035.1\|3002486_3003767_-	putative cytoplasmic transmembrane protein	NA	NA	NA	NA
BBF20036.1\|3003759_3005562_-	inner membrane ABC-transporter YbtQ	W8CYL7	Bacillus_phage	6.1e-22	26.5
BBF20037.1\|3005548_3007261_-	yersiniabactin-iron ABC transporter permease and ATP-binding components	W8CYL7	Bacillus_phage	1.8e-31	27.0
BBF20038.1\|3007517_3008477_+	transcriptional regulator	NA	NA	NA	NA
BBF20039.1\|3008667_3014775_+	yersiniabactin biosynthetic protein	A0A2K9L3I8	Tupanvirus	1.8e-33	27.3
BBF20040.1\|3014862_3024354_+	yersiniabactin biosynthetic protein	D0R7J2	Paenibacillus_phage	1.6e-49	36.8
BBF20041.1\|3024350_3025451_+	thiazolinyl-S-HMWP1 reductase YbtU	NA	NA	NA	NA
BBF20042.1\|3025447_3026251_+	yersiniabactin biosynthetic protein	NA	NA	NA	NA
BBF20043.1\|3026254_3027832_+	2,3-dihydroxybenzoate-amp ligase protein	NA	NA	NA	NA
BBF20044.1\|3027962_3029984_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
BBF20045.1\|3030633_3031383_+	uncharacterized protein	NA	NA	NA	NA
BBF20046.1\|3031515_3032778_+	adhesin	NA	NA	NA	NA
BBF20047.1\|3032997_3033474_+	adhesin	NA	NA	NA	NA
BBF20048.1\|3033601_3034654_-	ADP-heptose:LPS heptosyl transferase	NA	NA	NA	NA
BBF20049.1\|3034968_3036285_+	shikimate transporter	NA	NA	NA	NA
BBF20050.1\|3036386_3037841_+	AMP nucleosidase	NA	NA	NA	NA
BBF20051.1\|3038183_3038900_+	yeeN	NA	NA	NA	NA
BBF20052.1\|3039529_3040912_-	multidrug efflux system YeeO	NA	NA	NA	NA
BBF20053.1\|3041290_3042241_-	HTH-type transcriptional regulator cbl	NA	NA	NA	NA
BBF20054.1\|3042342_3043260_-	nitrogen assimilation regulatory protein	NA	NA	NA	NA
BBF20055.1\|3043717_3044653_-	L,D-transpeptidase linking Lpp to murein	NA	NA	NA	NA
BBF20056.1\|3044714_3045794_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
BBF20057.1\|3045805_3046549_-	cobalamin synthase	NA	NA	NA	NA
BBF20058.1\|3046545_3047091_-	cobalamin biosynthesis protein cobU	NA	NA	NA	NA
BBF20059.1\|3048888_3050910_+	outer membrane receptor for iron compound or colicin	NA	NA	NA	NA
BBF20060.1\|3051280_3051925_-	ParB-like nuclease	A0A0F7L444	uncultured_marine_virus	8.2e-54	50.5
BBF20061.1\|3051909_3052887_-	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	1.9e-49	33.3
BBF20062.1\|3054184_3054838_+	LmbE-like protein	NA	NA	NA	NA
BBF20063.1\|3054851_3056048_+	glycosyl transferase family protein	NA	NA	NA	NA
BBF20064.1\|3056082_3056607_+	transferase	NA	NA	NA	NA
BBF20065.1\|3056608_3057382_+	outer membrane protein	NA	NA	NA	NA
BBF20066.1\|3058383_3059598_+	PfkB family DNA-binding protein/kinase	NA	NA	NA	NA
BBF20067.1\|3059611_3060370_+	cytoplasmic protein	NA	NA	NA	NA
BBF20068.1\|3060423_3061389_+	putative inner membrane protein	NA	NA	NA	NA
BBF20069.1\|3061391_3062426_+	phosphotriesterase	NA	NA	NA	NA
BBF20070.1\|3064740_3065151_-	predicted protein	NA	NA	NA	NA
BBF20071.1\|3065138_3065540_-	Aec60	NA	NA	NA	NA
BBF20072.1\|3065705_3066275_-	Aec61	NA	NA	NA	NA
BBF20073.1\|3066474_3066675_+	predicted protein	NA	NA	NA	NA
BBF20074.1\|3067389_3067623_-	uncharacterized protein	NA	NA	NA	NA
BBF20075.1\|3067854_3069051_+\|transposase	transposase	NA	NA	NA	NA
BBF20076.1\|3069246_3069453_+	regulatory protein	NA	NA	NA	NA
BBF20077.1\|3069546_3070149_+	Aec62	NA	NA	NA	NA
BBF20078.1\|3071174_3071867_-\|transposase	transposase/IS protein	A0A2L1IVB6	Escherichia_phage	1.7e-118	88.4
3075917:3075932	attR	NA	NA	NA	NA

DBSCAN-SWA_14

3122173 : 3128476

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF20131.1\|3122173_3122716_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8
BBF20132.1\|3122720_3123599_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.6e-107	64.5
BBF20133.1\|3123656_3124556_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
BBF20134.1\|3124555_3125710_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.6e-100	53.6
BBF20135.1\|3126013_3126907_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.0e-46	42.0
BBF20136.1\|3127081_3128476_-	colanic acid biosynthesis protein	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0

DBSCAN-SWA_15

3222653 : 3232098

Enterobacteria_phage(85.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF20208.1\|3222653_3223790_+	VWA containing CoxE family protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7
BBF20209.1\|3223786_3225790_+\|transposase	transposase	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
BBF20210.1\|3225914_3226376_+	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
BBF20211.1\|3226416_3226887_-	yehS protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
BBF20212.1\|3226933_3227653_-	two-component response-regulatory protein YehT	NA	NA	NA	NA
BBF20213.1\|3227649_3229350_-	sensory kinase in two-component system with YehT	B6DZC2	Enterobacteria_phage	2.4e-307	99.5
BBF20214.1\|3229556_3230288_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
BBF20215.1\|3230435_3231167_-	inner membrane ABC transporter protein	NA	NA	NA	NA
BBF20216.1\|3231171_3232098_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_16

3646445 : 3652770

Mycoplasma_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF20573.1\|3646445_3647729_-	aminopeptidase B	Q6GYZ8	Mycoplasma_phage	2.9e-34	37.8
BBF20574.1\|3647787_3647988_-	protein iscX	NA	NA	NA	NA
BBF20575.1\|3647999_3648335_-	2Fe-2S ferredoxin	NA	NA	NA	NA
BBF20576.1\|3648336_3648777_-	chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	2.1e-05	43.8
BBF20577.1\|3648773_3650174_-	chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.4e-89	42.7
BBF20578.1\|3650190_3650706_-	DnaJ-like molecular chaperone specific for IscU	NA	NA	NA	NA
BBF20579.1\|3650801_3651125_-	iron-sulfur cluster assembly protein	A0A2H4N7N5	Lake_Baikal_phage	5.4e-22	48.6
BBF20580.1\|3651141_3651528_-	scaffold protein	A0A218MKD1	uncultured_virus	1.4e-53	78.9
BBF20581.1\|3651555_3652770_-	cysteine desulfurase	A0A1X7C038	Faustovirus	8.8e-33	31.8

DBSCAN-SWA_17

3810009 : 3817149

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF20733.1\|3810009_3812571_+	DNA mismatch repair protein mutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
BBF20734.1\|3812676_3813333_+	serine/threonine protein phosphatase 2	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
BBF20735.1\|3813383_3814151_-	HTH-type transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
BBF20736.1\|3814346_3815255_+	NAD binding domain-containing protein	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
BBF20737.1\|3815251_3816514_+	YgbK domain protein	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
BBF20738.1\|3816510_3817149_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5

DBSCAN-SWA_18

4059785 : 4147037

Escherichia_phage(21.74%)

protease,integrase,tRNA,transposase

attL 4086099:4086113|attR 4153884:4153905

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBF20946.1\|4059785_4060694_+\|protease	SPFH domain containing serineprotease	A0A2C9D0H9	Yersinia_phage	9.7e-53	55.4
BBF20947.1\|4060912_4062904_-	transketolase	NA	NA	NA	NA
BBF20948.1\|4063181_4063940_+	peptidase	NA	NA	NA	NA
BBF20949.1\|4064143_4065064_-	agmatinase	NA	NA	NA	NA
BBF20950.1\|4065199_4065931_-	lipoprotein	NA	NA	NA	NA
BBF20951.1\|4066076_4067975_-	arginine decarboxylase	NA	NA	NA	NA
BBF20952.1\|4068847_4070002_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
BBF20953.1\|4070437_4071832_+	sugar transporter	NA	NA	NA	NA
BBF20954.1\|4071950_4072406_+	protein SprT	NA	NA	NA	NA
BBF20955.1\|4072500_4073208_+	DNA-specific endonuclease I	NA	NA	NA	NA
BBF20956.1\|4073287_4074019_+	16S ribosomal RNA methyltransferase RsmE	NA	NA	NA	NA
BBF20957.1\|4074031_4074982_+	glutathione synthetase	NA	NA	NA	NA
BBF20958.1\|4075090_4075654_+	yqgE	NA	NA	NA	NA
BBF20959.1\|4075653_4076070_+	Holliday junction resolvase-like protein	NA	NA	NA	NA
BBF20960.1\|4076243_4077224_-	transporter	NA	NA	NA	NA
BBF20961.1\|4077241_4077946_+	alanine racemase domain protein	NA	NA	NA	NA
BBF20962.1\|4077963_4078530_+	inner membrane protein	NA	NA	NA	NA
BBF20963.1\|4078526_4078817_+	hypothetical protein	NA	NA	NA	NA
BBF20964.1\|4078824_4079418_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA
BBF20965.1\|4079410_4080547_+	coproporphyrinogen III oxidase	NA	NA	NA	NA
BBF20966.1\|4080615_4081623_-	alpha helix chain	NA	NA	NA	NA
BBF20967.1\|4081739_4082786_-	L-asparaginase II	NA	NA	NA	NA
BBF20968.1\|4082961_4083681_-	yggN protein	NA	NA	NA	NA
BBF20969.1\|4083864_4084191_-	yggL protein	NA	NA	NA	NA
BBF20970.1\|4084190_4084910_-\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA
BBF20971.1\|4085070_4086123_+	adenine DNA glycosylase	NA	NA	NA	NA
4086099:4086113	attL	NA	NA	NA	NA
BBF20972.1\|4086150_4086426_+	Fe(2+)-trafficking protein	NA	NA	NA	NA
4086099:4086113	attL	NA	NA	NA	NA
BBF20973.1\|4086487_4087570_+	membrane-bound lytic murein transglycosylase C	NA	NA	NA	NA
BBF20974.1\|4087771_4089028_+	nucleoside permease nupG	NA	NA	NA	NA
BBF20975.1\|4089076_4091203_-	ornithine decarboxylase	NA	NA	NA	NA
BBF20976.1\|4091610_4092318_+	membrane protein YqgA	NA	NA	NA	NA
BBF20977.1\|4092696_4093962_+\|integrase	prophage P4 integrase	Q7M297	Enterobacteria_phage	2.1e-77	38.1
BBF20978.1\|4094187_4095261_+	SHI-2 pathogenicity island protein	NA	NA	NA	NA
4094697:4094711	attR	NA	NA	NA	NA
BBF20979.1\|4095790_4096066_+	IS1 protein InsA	Q71TE9	Escherichia_phage	2.0e-46	98.9
4094697:4094711	attR	NA	NA	NA	NA
BBF20980.1\|4096110_4096488_+\|transposase	InsAB' transposase	Q71TF0	Escherichia_phage	1.1e-66	99.2
BBF20981.1\|4096810_4097311_+	MarR family transcriptional regulator	NA	NA	NA	NA
BBF20982.1\|4097777_4098155_-\|transposase	InsAB' transposase	Q71TF0	Escherichia_phage	1.1e-66	99.2
BBF20983.1\|4098199_4098475_-	IS1 protein InsA	Q71TE9	Escherichia_phage	2.0e-46	98.9
BBF20984.1\|4098503_4098773_-	major pilin subunit PapA	NA	NA	NA	NA
BBF20985.1\|4098769_4099072_-	PapA protein	NA	NA	NA	NA
BBF20986.1\|4100009_4100231_+	pap operon regulatory protein PapI	NA	NA	NA	NA
BBF20987.1\|4100881_4101682_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	2.3e-146	97.0
BBF20988.1\|4101681_4102008_-\|transposase	IS629, transposase orfA	Q6H9S4	Enterobacteria_phage	1.3e-55	99.1
BBF20989.1\|4102747_4103494_-\|transposase	transposase	NA	NA	NA	NA
BBF20990.1\|4104045_4104306_+	predicted protein	NA	NA	NA	NA
BBF20991.1\|4104347_4104908_+	transcriptional regulator	NA	NA	NA	NA
BBF20992.1\|4104947_4105376_+	putative uncharacterized protein	NA	NA	NA	NA
BBF20993.1\|4106084_4106450_+	insertion sequence 2 OrfA protein	Q76S41	Shigella_phage	9.6e-60	100.0
BBF20994.1\|4106656_4107313_+\|transposase	insertion element IS2 transposase InsD	Q9ZXG3	Shigella_phage	5.8e-124	96.8
BBF20995.1\|4107425_4108619_-	ShiF	NA	NA	NA	NA
BBF20996.1\|4108754_4110479_+	IucA	NA	NA	NA	NA
BBF20997.1\|4110479_4111427_+	IucB	NA	NA	NA	NA
BBF20998.1\|4111426_4113169_+	IucC	NA	NA	NA	NA
BBF20999.1\|4113165_4114443_+	aerobactin siderophore L-lysine 6-monooxygenase IucD	NA	NA	NA	NA
BBF21000.1\|4114524_4116726_+	aerobactin siderophore ferric receptor protein IutA	NA	NA	NA	NA
BBF21001.1\|4117669_4121557_+\|protease	serine protease sat precursor	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
BBF21002.1\|4121828_4122197_+	IS600 ORF1	NA	NA	NA	NA
BBF21003.1\|4123038_4123305_+\|integrase	integrase	Q9MBM9	Staphylococcus_prophage	6.2e-16	56.1
BBF21004.1\|4123389_4124208_+\|transposase	ISSd1, transposase orfA/B, fusion	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
BBF21005.1\|4124219_4124675_+	predicted protein	NA	NA	NA	NA
BBF21006.1\|4125090_4125552_+\|transposase	IS3 family transposase	NA	NA	NA	NA
BBF21007.1\|4125588_4126128_+\|integrase	integrase catalytic region	NA	NA	NA	NA
BBF21008.1\|4126632_4126836_-	L-lactate permease	NA	NA	NA	NA
BBF21009.1\|4128085_4128301_-	predicted protein	NA	NA	NA	NA
BBF21010.1\|4128304_4128673_-	predicted protein	NA	NA	NA	NA
BBF21011.1\|4128963_4129206_-	predicted protein	NA	NA	NA	NA
BBF21012.1\|4130067_4132077_-	bifunctional enterobactin receptor/adhesin protein	A0A0P0I887	Acinetobacter_phage	1.9e-08	31.5
BBF21013.1\|4132657_4133314_-\|transposase	insertion element IS2 transposase InsD	Q9ZXG3	Shigella_phage	3.5e-121	95.4
BBF21014.1\|4133520_4133886_-	insertion sequence 2 OrfA protein	Q76S41	Shigella_phage	9.6e-60	100.0
BBF21015.1\|4134037_4135024_-	phage protein YjhS encoded within prophage CP-933O	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
BBF21016.1\|4135123_4135858_+	transcriptional regulator	NA	NA	NA	NA
BBF21017.1\|4135893_4136817_-	predicted protein	NA	NA	NA	NA
BBF21018.1\|4136878_4137988_-	N-acetylneuraminate epimerase 1	NA	NA	NA	NA
BBF21019.1\|4138000_4138711_-	N-acetylneuraminic acid outer membrane channel protein NanC	NA	NA	NA	NA
BBF21020.1\|4138756_4139587_-	predicted protein	NA	NA	NA	NA
BBF21021.1\|4139590_4141063_-	sialic acid transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
BBF21022.1\|4141111_4141987_-	N-acetylmannosamine kinase	NA	NA	NA	NA
BBF21023.1\|4142020_4142938_-	N-acetylneuraminate lyase	NA	NA	NA	NA
BBF21024.1\|4143661_4144024_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	3.3e-28	80.3
BBF21025.1\|4144020_4144371_+\|transposase	ISCro1 transposase B	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
BBF21026.1\|4144401_4145502_+\|transposase	IS66 family element, transposase	A0A0P0ZBS5	Stx2-converting_phage	1.4e-98	65.9
BBF21027.1\|4145498_4147037_+\|transposase	IS66 family element, transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
4153884:4153905	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP018785

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. AP018784

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection