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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
AP018150 Mycoavidus cysteinexigens DNA, complete genome, strain: B1-EB 1 crisprs RT,DinG,DEDDh,PD-DExK,cas3 1 1 11 0

Results visualization

1. AP018150
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
AP018150_1 1307762-1307834 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 AP018150.1 2760426-2760452 1 0.963

1. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to position: 2760426-2760452, mismatch: 1, identity: 0.963

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
ttcattctaaaatagaaaaatgcggct	Protospacer
******************** ******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NC_011311 Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence 68381-68407 5 0.815
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP017256 Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence 81330-81356 5 0.815
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NC_010479 Synechococcus sp. PCC 7002 plasmid pAQ5, complete sequence 12476-12502 6 0.778
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP033739 Enterococcus sp. FDAARGOS_553 plasmid unnamed1, complete sequence 3252-3278 6 0.778
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP040783 Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence 69963-69989 7 0.741
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP014283 Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence 270670-270696 7 0.741
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP032614 Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence 444259-444285 7 0.741
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP023246 Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence 499730-499756 7 0.741
AP018150_1 1.1|1307785|27|AP018150|CRISPRCasFinder 1307785-1307811 27 NZ_CP016589 Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence 138854-138880 7 0.741

1. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NC_011311 (Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence) position: , mismatch: 5, identity: 0.815

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
ttcattttaaaatggaaaaaagcccca	Protospacer
******.******.*********  * 

2. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 5, identity: 0.815

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
ctcattataaaatagaaaaaagtagtt	Protospacer
.***** ***************..*.*

3. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NC_010479 (Synechococcus sp. PCC 7002 plasmid pAQ5, complete sequence) position: , mismatch: 6, identity: 0.778

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
tttattctaaaatagaaaaaaactatg	Protospacer
**.******************.* .. 

4. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP033739 (Enterococcus sp. FDAARGOS_553 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
ttttttctaaaatagaaaaaagcaata	Protospacer
**. *******************... 

5. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.741

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
atcattctaaaatataaaaaaggaagg	Protospacer
 ************* ******* ..  

6. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 7, identity: 0.741

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
atcattctaaaatataaaaaaggaagg	Protospacer
 ************* ******* ..  

7. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.741

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
atcattctaaaatataaaaaaggaagg	Protospacer
 ************* ******* ..  

8. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.741

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
atcattctaaaatataaaaaaggaagg	Protospacer
 ************* ******* ..  

9. spacer 1.1|1307785|27|AP018150|CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 7, identity: 0.741

ttcattctaaaatagaaaaaagcggct	CRISPR spacer
atcattctaaaatataaaaaaggaagg	Protospacer
 ************* ******* ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 342463 : 389454 35 Escherichia_phage(38.46%) integrase,protease attL 358523:358539|attR 393042:393058
DBSCAN-SWA_2 467797 : 473905 8 Burkholderia_phage(33.33%) integrase attL 448348:448369|attR 479590:479611
DBSCAN-SWA_3 484412 : 516625 46 Haemophilus_phage(27.78%) NA NA
DBSCAN-SWA_4 582234 : 593298 12 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_5 1522582 : 1574565 44 Burkholderia_virus(15.38%) integrase,protease,tRNA attL 1530091:1530105|attR 1560090:1560104
DBSCAN-SWA_6 1588827 : 1616848 40 Haemophilus_phage(34.38%) NA NA
DBSCAN-SWA_7 1747724 : 1778616 46 Haemophilus_phage(27.78%) head NA
DBSCAN-SWA_8 1790353 : 1821882 47 Haemophilus_phage(27.03%) NA NA
DBSCAN-SWA_9 1840138 : 1871642 46 Haemophilus_phage(28.12%) head NA
DBSCAN-SWA_10 1880527 : 1953868 46 Enterobacteria_phage(13.33%) integrase attL 1886371:1886413|attR 1953869:1953911
DBSCAN-SWA_11 1980619 : 1989530 9 Bordetella_phage(75.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage