CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP019009	Serratia marcescens AS-1 DNA, complete genome	0 crisprs	cas3,RT,DEDDh,DinG,csa3,WYL	0	0	3	0
AP019010	Serratia marcescens AS-1 plasmid pSERAS01 DNA, complete genome	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3427241 : 3447878

Klebsiella_phage(23.53%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG70341.1\|3427241_3429263_-	hypothetical protein	A0A1I9SF20	Klebsiella_phage	2.0e-29	46.7
BBG70342.1\|3429259_3430417_-	hypothetical protein	A0A1V0E5M2	Salmonella_phage	3.3e-45	57.8
BBG70343.1\|3430466_3433955_-	host specificity protein	F1C571	Cronobacter_phage	0.0e+00	66.2
BBG70344.1\|3434107_3434362_-	hypothetical protein	F1C572	Cronobacter_phage	1.5e-27	74.4
BBG70345.1\|3434776_3434878_-	hypothetical protein	NA	NA	NA	NA
BBG70346.1\|3435152_3435857_-	peptidase P60	K7PGR2	Enterobacteria_phage	4.8e-108	76.2
BBG70347.1\|3435866_3436616_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.2e-95	64.1
BBG70348.1\|3436628_3436967_-	hypothetical protein	Q6UAW6	Klebsiella_phage	1.1e-33	60.0
BBG70349.1\|3436966_3439393_-	hypothetical protein	Q6UAW7	Klebsiella_phage	2.3e-16	43.1
BBG70350.1\|3439531_3439897_-	hypothetical protein	Q7Y401	Yersinia_phage	1.9e-23	44.2
BBG70351.1\|3440013_3440469_-	hypothetical protein	Q6UAX0	Klebsiella_phage	1.2e-56	74.8
BBG70352.1\|3440510_3440903_-	hypothetical protein	Q7Y404	Yersinia_phage	9.4e-21	46.8
BBG70353.1\|3440899_3441289_-	hypothetical protein	Q7Y405	Yersinia_phage	4.8e-25	42.1
BBG70354.1\|3441345_3441786_-	lysozyme	A0A0M5M782	Salmonella_phage	2.0e-43	63.4
BBG70355.1\|3441782_3442088_-	hypothetical protein	F1C5D1	Cronobacter_phage	2.4e-40	81.6
BBG70356.1\|3442891_3443254_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.7e-38	64.6
BBG70357.1\|3443496_3444174_+	hypothetical protein	K7PK07	Enterobacteria_phage	6.0e-07	44.6
BBG70358.1\|3444576_3444906_-	transcriptional regulator	NA	NA	NA	NA
BBG70359.1\|3445033_3445501_-	hypothetical protein	NA	NA	NA	NA
BBG70360.1\|3445607_3446186_+	TetR family transcriptional regulator	NA	NA	NA	NA
BBG70361.1\|3446179_3446596_-	lactoylglutathione lyase	NA	NA	NA	NA
BBG70362.1\|3446747_3447878_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.4e-104	53.9

DBSCAN-SWA_2

4376564 : 4417369

Erwinia_phage(50.0%)

tRNA,tail,plate,integrase,head,portal,terminase,capsid

attL 4383195:4383243|attR 4417462:4417510

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG71208.1\|4376564_4377578_-\|tRNA	tRNA N6-adenosine threonylcarbamoyltransferase	A0A0R6PI74	Moraxella_phage	2.2e-109	59.5
BBG71209.1\|4377903_4378119_+	30S ribosomal protein S21	NA	NA	NA	NA
BBG71210.1\|4378255_4380004_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.5e-73	38.6
BBG71211.1\|4380161_4382003_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
BBG71212.1\|4382058_4382511_-	polyketide cyclase	NA	NA	NA	NA
BBG71213.1\|4382528_4383017_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4383195:4383243	attL	NA	NA	NA	NA
BBG71214.1\|4383439_4383670_-	prophage late control protein OgrK	Q37973	Salmonella_virus	9.4e-21	64.5
BBG71215.1\|4383753_4384914_-	late control protein D	A0A218M4J7	Erwinia_phage	7.1e-125	62.6
BBG71216.1\|4384910_4385393_-\|tail	tail assembly protein	A0A0F7LDE8	Escherichia_phage	7.5e-52	62.8
BBG71217.1\|4385398_4388245_-	hypothetical protein	A0A0M3UL85	Salmonella_phage	2.0e-107	50.7
BBG71218.1\|4388392_4388674_-	hypothetical protein	A0A0F7LDQ8	Escherichia_phage	1.4e-26	70.1
BBG71219.1\|4388728_4389238_-\|tail	major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
BBG71220.1\|4389253_4390423_-\|tail	tail sheath protein	F1BUU3	Erwinia_phage	1.8e-184	81.7
BBG71221.1\|4391152_4391371_+	hypothetical protein	NA	NA	NA	NA
BBG71222.1\|4391387_4391486_+	hypothetical protein	NA	NA	NA	NA
BBG71223.1\|4391538_4392084_-	hypothetical protein	A0A222YWC2	Escherichia_phage	6.5e-36	44.1
BBG71224.1\|4392085_4394704_-	hypothetical protein	Q858V4	Yersinia_virus	1.4e-59	54.4
BBG71225.1\|4394713_4395247_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	4.8e-76	76.0
BBG71226.1\|4395239_4396148_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	5.6e-109	68.5
BBG71227.1\|4396152_4396503_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	3.8e-37	67.2
BBG71228.1\|4396499_4396640_-	hypothetical protein	NA	NA	NA	NA
BBG71229.1\|4396650_4397280_-\|plate	baseplate assembly protein	A0A0M4S6F6	Salmonella_phage	1.6e-75	71.5
BBG71230.1\|4397352_4397799_-	virion morphogenesis protein	O80313	Escherichia_phage	7.9e-40	57.7
BBG71231.1\|4397785_4398262_-\|tail	tail fiber protein	F1BUP9	Erwinia_phage	3.4e-49	64.1
BBG71232.1\|4398357_4398786_-	lysozyme	F1BUQ1	Erwinia_phage	7.1e-14	36.6
BBG71233.1\|4398782_4399295_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-58	66.9
BBG71234.1\|4399278_4399488_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.6e-09	43.5
BBG71235.1\|4399492_4399696_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
BBG71236.1\|4399695_4400184_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
BBG71237.1\|4400277_4400937_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	5.2e-80	69.4
BBG71238.1\|4400939_4402118_-\|capsid	phage capsid protein	F1BUQ8	Erwinia_phage	1.7e-158	78.9
BBG71239.1\|4402160_4402976_-\|capsid	phage capsid protein	S4TP53	Salmonella_phage	1.9e-71	53.8
BBG71240.1\|4403082_4404891_+	oxidoreductase	F1BUR2	Erwinia_phage	1.9e-289	81.5
BBG71241.1\|4404890_4405925_+\|portal	phage portal vertex protein	F1BUR7	Erwinia_phage	5.0e-162	79.8
BBG71242.1\|4405969_4406314_-	hypothetical protein	NA	NA	NA	NA
BBG71243.1\|4407022_4408024_+	hypothetical protein	NA	NA	NA	NA
BBG71244.1\|4408023_4409103_+	hypothetical protein	NA	NA	NA	NA
BBG71245.1\|4409113_4409257_-	hypothetical protein	NA	NA	NA	NA
BBG71246.1\|4410066_4410303_-	hypothetical protein	NA	NA	NA	NA
BBG71247.1\|4410341_4412558_-	phage replication protein	A0A0F7LBQ2	Escherichia_phage	2.0e-240	58.5
BBG71248.1\|4412554_4412881_-	hypothetical protein	NA	NA	NA	NA
BBG71249.1\|4412877_4413195_-	hypothetical protein	NA	NA	NA	NA
BBG71250.1\|4413184_4413466_-	hypothetical protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
BBG71251.1\|4413641_4413755_-	hypothetical protein	NA	NA	NA	NA
BBG71252.1\|4413754_4414066_-	hypothetical protein	NA	NA	NA	NA
BBG71253.1\|4414065_4414308_-	hypothetical protein	A0A218M4I9	Erwinia_phage	2.8e-07	49.2
BBG71254.1\|4414875_4415385_-	hypothetical protein	A0A1S6L008	Salmonella_phage	7.1e-45	53.6
BBG71255.1\|4415415_4415637_-	hypothetical protein	NA	NA	NA	NA
BBG71256.1\|4415746_4416331_+	repressor	F1BUS8	Erwinia_phage	1.1e-28	40.2
BBG71257.1\|4416334_4417369_+\|integrase	integrase	F1BUS9	Erwinia_phage	5.0e-122	62.9
4417462:4417510	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4698021 : 4706948

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG71531.1\|4698021_4700100_+	membrane protein	H9YQA8	environmental_Halophage	1.3e-52	71.9
BBG71532.1\|4700140_4701358_-	acetylornithine aminotransferase	A0A1V0SKB7	Klosneuvirus	3.6e-26	26.1
BBG71533.1\|4701489_4702065_-	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	4.0e-68	62.3
BBG71534.1\|4702137_4703661_-	hypothetical protein	A0A248XCZ8	Klebsiella_phage	2.5e-77	42.6
BBG71535.1\|4703812_4704538_-	DNA-binding response regulator	NA	NA	NA	NA
BBG71536.1\|4704537_4706223_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	9.8e-224	72.7
BBG71537.1\|4706378_4706948_-	peptidyl-prolyl cis-trans isomerase	A0A1V0S9I2	Catovirus	1.3e-07	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage