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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
AP018670 Sphingobium amiense DSM 16289 plasmid pSAMIE_7 DNA, complete genome 0 crisprs NA 0 0 0 0
AP018664 Sphingobium amiense DSM 16289 DNA, complete genome 1 crisprs csa3,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,WYL,DinG 1 21 10 0
AP018669 Sphingobium amiense DSM 16289 plasmid pSAMIE_6 DNA, complete genome 0 crisprs NA 0 0 0 0
AP018668 Sphingobium amiense DSM 16289 plasmid pSAMIE_5 DNA, complete genome 0 crisprs NA 0 0 0 0
AP018667 Sphingobium amiense DSM 16289 plasmid pSAMIE_4 DNA, complete genome 0 crisprs NA 0 0 0 0
AP018666 Sphingobium amiense DSM 16289 plasmid pSAMIE_3 DNA, complete genome 0 crisprs NA 0 0 2 0
AP018665 Sphingobium amiense DSM 16289 plasmid pSAMIE_2 DNA, complete genome 0 crisprs csa3 0 0 2 0

Results visualization

1. AP018664
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
AP018664_2 2655880-2658741 TypeI NA
43 spacers
cas1,cas4,cas7,cas8c,cas5,cas3

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Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
AP018664_2 2.40|2658478|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658478-2658511 34 AP018664.1 1817671-1817704 0 1.0

1. spacer 2.40|2658478|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to position: 1817671-1817704, mismatch: 0, identity: 1.0

gcgatgttcgtcacgccatgggcggcgcacgcca	CRISPR spacer
gcgatgttcgtcacgccatgggcggcgcacgcca	Protospacer
**********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
AP018664_3 3.1|3561511|27|AP018664|CRISPRCasFinder 3561511-3561537 27 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 1550043-1550069 0 1.0
AP018664_3 3.2|3561562|27|AP018664|CRISPRCasFinder 3561562-3561588 27 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 1550094-1550120 0 1.0
AP018664_3 3.2|3561562|27|AP018664|CRISPRCasFinder 3561562-3561588 27 NZ_CP035512 Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence 14213-14239 0 1.0
AP018664_3 3.1|3561511|27|AP018664|CRISPRCasFinder 3561511-3561537 27 NZ_CP035512 Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence 88516-88542 1 0.963
AP018664_2 2.12|2656636|33|AP018664|CRISPRCasFinder,CRT 2656636-2656668 33 NC_009508 Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence 28641-28673 6 0.818
AP018664_2 2.20|2657151|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657151-2657183 33 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4234489-4234521 6 0.818
AP018664_2 2.21|2657216|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657216-2657249 34 KX987127 Thermus phage G20c, complete genome 23399-23432 6 0.824
AP018664_2 2.21|2657216|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657216-2657249 34 EU100883 Thermus phage P23-45, complete genome 24026-24059 6 0.824
AP018664_2 2.21|2657216|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657216-2657249 34 NC_009804 Thermus phage P74-26, complete genome 23263-23296 6 0.824
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4507277-4507309 6 0.818
AP018664_2 2.40|2658478|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658478-2658511 34 NZ_CP028919 Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence 24126-24159 6 0.824
AP018664_3 3.2|3561562|27|AP018664|CRISPRCasFinder 3561562-3561588 27 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 1199848-1199874 6 0.778
AP018664_3 3.2|3561562|27|AP018664|CRISPRCasFinder 3561562-3561588 27 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 978688-978714 6 0.778
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 CP047139 Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence 1741432-1741465 7 0.794
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP021653 Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence 246715-246748 7 0.794
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP012688 Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence 246724-246757 7 0.794
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP032342 Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence 661093-661126 7 0.794
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP033321 Azospirillum brasilense strain Cd plasmid p3, complete sequence 513808-513841 7 0.794
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP033315 Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence 570481-570514 7 0.794
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 MH746817 Achromobacter phage vB_Ade_ART, complete genome 2803-2836 7 0.794
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 MK962633 Achromobacter phage vB_AxyS_19-32_Axy14, complete genome 32240-32273 7 0.794
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 MT241605 Achromobacter phage AMA1, complete genome 28321-28354 7 0.794
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 KP202969 Achromobacter phage JWX, complete genome 31370-31403 7 0.794
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 KP202970 Achromobacter phage 83-24, complete genome 31513-31546 7 0.794
AP018664_2 2.39|2658411|35|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658411-2658445 35 NZ_CP021811 Sinorhizobium meliloti strain Rm41 plasmid accessoryA, complete sequence 67562-67596 7 0.8
AP018664_2 2.39|2658411|35|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658411-2658445 35 NC_018682 Sinorhizobium meliloti Rm41 plasmid pRM41A, complete sequence 224584-224618 7 0.8
AP018664_2 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT 2656306-2656339 34 NC_017957 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence 604042-604075 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 CP047137 Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence 1680218-1680251 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP032686 Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence 181501-181534 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP032691 Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence 176461-176494 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3330786-3330819 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1512101-1512134 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 532507-532540 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1440331-1440364 8 0.765
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 MG757167 Mycobacterium phage Tesla, complete genome 21422-21455 8 0.765
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MN369759 Mycobacterium phage Mithril, complete genome 44439-44472 8 0.765
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 NC_028968 Mycobacterium phage BrownCNA, complete genome 44708-44741 8 0.765
AP018664_2 2.14|2656767|35|AP018664|CRISPRCasFinder,CRT 2656767-2656801 35 NC_049851 Burkholderia phage BcepSauron, complete genome 40847-40881 8 0.771
AP018664_2 2.14|2656767|35|AP018664|CRISPRCasFinder,CRT 2656767-2656801 35 NC_049850 Burkholderia phage BcepSaruman, complete genome 40140-40174 8 0.771
AP018664_2 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657086-2657118 33 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1668255-1668287 8 0.758
AP018664_2 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657086-2657118 33 NC_011881 Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence 123937-123969 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 KJ567045 Mycobacterium phage Emerson, complete genome 40498-40530 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1731435-1731467 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 644002-644034 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 729039-729071 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1315991-1316023 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1488381-1488413 8 0.758
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NC_016588 Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence 250841-250873 8 0.758
AP018664_2 2.28|2657678|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657678-2657711 34 NZ_CP029777 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence 323120-323153 8 0.765
AP018664_2 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658610-2658642 33 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1668255-1668287 8 0.758
AP018664_2 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658610-2658642 33 NC_011881 Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence 123937-123969 8 0.758
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MT897910 Mycobacterium phage VioletZ, complete genome 44524-44557 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MT818419 Mycobacterium phage Lolalove, complete genome 44432-44465 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MN428050 Mycobacterium phage Apex, complete genome 44637-44670 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MK524486 Mycobacterium phage Waleliano, complete genome 44440-44473 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MN234171 Mycobacterium phage Magpie, complete genome 44271-44304 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MH513970 Mycobacterium phage Hangman, complete genome 44529-44562 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 KX589269 Mycobacterium phage Fortunato, complete genome 44450-44483 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MT639648 Mycobacterium phage Heath, complete genome 44037-44070 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 NC_042035 Mycobacterium phage Zemanar, complete sequence 44421-44454 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 NC_022331 Mycobacterium phage Bane1, complete genome 44100-44133 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 KF279413 Mycobacterium phage Bane2, complete genome 44078-44111 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 KF493881 Mycobacterium phage JAMaL, complete genome 44599-44632 9 0.735
AP018664_2 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT 2656570-2656603 34 MT310870 Mycobacterium phage RawrgerThat, complete genome 44459-44492 9 0.735
AP018664_2 2.12|2656636|33|AP018664|CRISPRCasFinder,CRT 2656636-2656668 33 NZ_CP020716 Cnuibacter physcomitrellae strain XA(T) plasmid unnamed1, complete sequence 103114-103146 9 0.727
AP018664_2 2.15|2656834|34|AP018664|CRISPRCasFinder,CRT 2656834-2656867 34 NZ_CP043439 Cupriavidus campinensis strain MJ1 plasmid unnamed2, complete sequence 217105-217138 9 0.735
AP018664_2 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657086-2657118 33 NZ_CP015586 Roseomonas gilardii strain U14-5 plasmid 2, complete sequence 3392-3424 9 0.727
AP018664_2 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657086-2657118 33 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 440253-440285 9 0.727
AP018664_2 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657086-2657118 33 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 33786-33818 9 0.727
AP018664_2 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657282-2657315 34 MH598512 Bacillus phage Wes44, complete genome 14003-14036 9 0.735
AP018664_2 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657282-2657315 34 MG784342 Bacillus phage Carmen17, complete genome 13625-13658 9 0.735
AP018664_2 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657282-2657315 34 NC_017976 Bacillus phage PBC1, complete genome 30619-30652 9 0.735
AP018664_2 2.23|2657348|35|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657348-2657382 35 MT310896 Microbacterium phage Lynlen, complete genome 15718-15752 9 0.743
AP018664_2 2.25|2657482|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657482-2657515 34 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 396617-396650 9 0.735
AP018664_2 2.25|2657482|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657482-2657515 34 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 346665-346698 9 0.735
AP018664_2 2.25|2657482|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657482-2657515 34 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 403205-403238 9 0.735
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NC_012987 Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence 128669-128701 9 0.727
AP018664_2 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657613-2657645 33 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1083947-1083979 9 0.727
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 3949-3982 9 0.735
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 113225-113258 9 0.735
AP018664_2 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658610-2658642 33 NZ_CP015586 Roseomonas gilardii strain U14-5 plasmid 2, complete sequence 3392-3424 9 0.727
AP018664_2 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658610-2658642 33 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 440253-440285 9 0.727
AP018664_2 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658610-2658642 33 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 33786-33818 9 0.727
AP018664_2 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT 2656306-2656339 34 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1475985-1476018 10 0.706
AP018664_2 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT 2656306-2656339 34 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 261540-261573 10 0.706
AP018664_2 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT 2656306-2656339 34 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3854012-3854045 10 0.706
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 549630-549663 10 0.706
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 298935-298968 10 0.706
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1514129-1514162 10 0.706
AP018664_2 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT 2656504-2656537 34 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1263436-1263469 10 0.706
AP018664_2 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657282-2657315 34 MN270258 Streptococcus phage phi-SgaBSJ27_rum, complete genome 53067-53100 10 0.706
AP018664_2 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657282-2657315 34 MN270259 Streptococcus phage phi-SgaBSJ31_rum, complete genome 53103-53136 10 0.706
AP018664_2 2.30|2657813|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657813-2657846 34 NZ_CP054603 Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed4, complete sequence 54030-54063 10 0.706
AP018664_2 2.30|2657813|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657813-2657846 34 NZ_CP049043 Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_6, complete sequence 45485-45518 10 0.706
AP018664_2 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657282-2657315 34 MN270269 Streptococcus phage phi-SsuHCJ3_rum, partial genome 54127-54160 11 0.676
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 MT498057 Microbacterium phage Cicada, complete genome 40342-40375 11 0.676
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 MK016497 Microbacterium phage Johann, complete genome 40355-40388 11 0.676
AP018664_2 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR 2657945-2657978 34 MK016495 Microbacterium phage Goodman, complete genome 40355-40388 11 0.676
AP018664_2 2.39|2658411|35|AP018664|CRISPRCasFinder,CRT,PILER-CR 2658411-2658445 35 NZ_CP030354 Novosphingobium sp. P6W plasmid pP6W1, complete sequence 325062-325096 11 0.686

1. spacer 3.1|3561511|27|AP018664|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcgattgcaagttgtgatcgatgccg	CRISPR spacer
gtcgattgcaagttgtgatcgatgccg	Protospacer
***************************

2. spacer 3.2|3561562|27|AP018664|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgggcaacaagtgaagattagatcca	CRISPR spacer
tcgggcaacaagtgaagattagatcca	Protospacer
***************************

3. spacer 3.2|3561562|27|AP018664|CRISPRCasFinder matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcgggcaacaagtgaagattagatcca	CRISPR spacer
tcgggcaacaagtgaagattagatcca	Protospacer
***************************

4. spacer 3.1|3561511|27|AP018664|CRISPRCasFinder matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 1, identity: 0.963

gtcgattgcaagttgtgatcgatgccg	CRISPR spacer
atcgattgcaagttgtgatcgatgccg	Protospacer
.**************************

5. spacer 2.12|2656636|33|AP018664|CRISPRCasFinder,CRT matches to NC_009508 (Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence) position: , mismatch: 6, identity: 0.818

ccggatgcgactgacgatcgggtcaagcagatg	CRISPR spacer
gcgaatgcgactgacgatcgggtcgagcagcac	Protospacer
 **.********************.*****   

6. spacer 2.20|2657151|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.818

-ggtcgcgagggtgcgctcggaggtgaccgtcgg	CRISPR spacer
ggaccgcg-ggttgcgctcggaggtcaccgtcga	Protospacer
 *..**** ** ************* *******.

7. spacer 2.21|2657216|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to KX987127 (Thermus phage G20c, complete genome) position: , mismatch: 6, identity: 0.824

acctcgacgcttggcgtgtgcccctttccggcgc	CRISPR spacer
gcctgcccgcctggcgtgtgccgctttccggcgc	Protospacer
.***   ***.*********** ***********

8. spacer 2.21|2657216|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to EU100883 (Thermus phage P23-45, complete genome) position: , mismatch: 6, identity: 0.824

acctcgacgcttggcgtgtgcccctttccggcgc	CRISPR spacer
gcctgcccgcctggcgtgtgccgctttccggcgc	Protospacer
.***   ***.*********** ***********

9. spacer 2.21|2657216|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_009804 (Thermus phage P74-26, complete genome) position: , mismatch: 6, identity: 0.824

acctcgacgcttggcgtgtgcccctttccggcgc	CRISPR spacer
gcctgcccgcctggcgtgtgccgctttccggcgc	Protospacer
.***   ***.*********** ***********

10. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.818

atcgaactgctgcgcaacgccatggctctgacc---	CRISPR spacer
atcgaactgcagcgcaacgtcatg---ctgaacatg	Protospacer
********** ********.****   **** *   

11. spacer 2.40|2658478|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028919 (Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.824

-gcgatgttcgtcacgccatgggcggcgcacgcca	CRISPR spacer
ggcgata-tggtcgcgccatgcgcggcgcacgccg	Protospacer
 *****. * ***.******* ************.

12. spacer 3.2|3561562|27|AP018664|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.778

tcgggcaacaagtgaagattagatcca	CRISPR spacer
ctcgggagcaagtgaagattagatcct	Protospacer
.. ** *.****************** 

13. spacer 3.2|3561562|27|AP018664|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 6, identity: 0.778

tcgggcaacaagtgaagattagatcca	CRISPR spacer
ctcgggagcaagtgaagattagatcct	Protospacer
.. ** *.****************** 

14. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
aatgccgccgcgccgccgacgcccagcagccaag	Protospacer
 .*******************.*****.***   

15. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
aatgccgccgcgccgccgacgcccagcagccaag	Protospacer
 .*******************.*****.***   

16. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
aatgccgccgcgccgccgacgcccagcagccaag	Protospacer
 .*******************.*****.***   

17. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgccg-ccgcgccgccgacgtccagcggccccc	CRISPR spacer
-gtggagacggcgccgccgacgaccagccgccccg	Protospacer
 ***  * * ************ ***** ***** 

18. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgccg-ccgcgccgccgacgtccagcggccccc	CRISPR spacer
-gtggagacggcgccgccgacgaccagccgccccg	Protospacer
 ***  * * ************ ***** ***** 

19. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgccg-ccgcgccgccgacgtccagcggccccc	CRISPR spacer
-gtggagacggcgccgccgacgaccagccgccccg	Protospacer
 ***  * * ************ ***** ***** 

20. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MH746817 (Achromobacter phage vB_Ade_ART, complete genome) position: , mismatch: 7, identity: 0.794

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
tcgcccttcttgcgcaggtcgttgcggtaccagg	Protospacer
  *.************ *********.****.* 

21. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MK962633 (Achromobacter phage vB_AxyS_19-32_Axy14, complete genome) position: , mismatch: 7, identity: 0.794

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
tcgcccttcttgcgcaggtcgttgcggtaccagg	Protospacer
  *.************ *********.****.* 

22. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MT241605 (Achromobacter phage AMA1, complete genome) position: , mismatch: 7, identity: 0.794

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
tcgcccttcttgcgcaggtcgttgcggtaccagg	Protospacer
  *.************ *********.****.* 

23. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to KP202969 (Achromobacter phage JWX, complete genome) position: , mismatch: 7, identity: 0.794

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
tcgcccttcttgcgcaggtcgttgcggtaccagg	Protospacer
  *.************ *********.****.* 

24. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to KP202970 (Achromobacter phage 83-24, complete genome) position: , mismatch: 7, identity: 0.794

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
tcgcccttcttgcggaggtcgttgcgataccagg	Protospacer
  *.********** * **************.* 

25. spacer 2.39|2658411|35|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021811 (Sinorhizobium meliloti strain Rm41 plasmid accessoryA, complete sequence) position: , mismatch: 7, identity: 0.8

gaccttcgccgccgcctcacttccgaaaacggagt	CRISPR spacer
gaccttcgccgccggctcaattccgacgatggcga	Protospacer
************** **** ****** .*.** * 

26. spacer 2.39|2658411|35|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_018682 (Sinorhizobium meliloti Rm41 plasmid pRM41A, complete sequence) position: , mismatch: 7, identity: 0.8

gaccttcgccgccgcctcacttccgaaaacggagt	CRISPR spacer
gaccttcgccgccggctcaattccgacgatggcga	Protospacer
************** **** ****** .*.** * 

27. spacer 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.765

gtcgtaacgtcgatcggcatcaacgacgccaata	CRISPR spacer
gcgatgatctcgatcggcatcaacaacgccaatt	Protospacer
*. .*.*. ***************.******** 

28. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
aacgccgccgcgccgccgacgcccagcagccagg	Protospacer
 ..******************.*****.***   

29. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
ccggccgccgcgccgccgatgaccagcgagagcc	Protospacer
*  ****************.* ******.   **

30. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
ccggccgccgcgccgccgatgaccagcgagagcc	Protospacer
*  ****************.* ******.   **

31. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
cagccgcccgcgccgccgacggccagcagcccgc	Protospacer
*.  *  ************** *****.**** *

32. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc--	CRISPR spacer
cgggccgccgtgccgccgacgtcc--cagctcatcg	Protospacer
** *******.*************  *.**.* .  

33. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 8, identity: 0.765

cgtg-ccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
-atgcccgccgcgccgcccacgcccagcgtggcgc	Protospacer
 .** ************* ***.******   * *

34. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc--	CRISPR spacer
cgggccgccgtgccgccgacgtcc--cagctcatcg	Protospacer
** *******.*************  *.**.* .  

35. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to MG757167 (Mycobacterium phage Tesla, complete genome) position: , mismatch: 8, identity: 0.765

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
agtgccgccgcgccgcccaggtccaccagggcct	Protospacer
 **************** * ***** *.*  **.

36. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MN369759 (Mycobacterium phage Mithril, complete genome) position: , mismatch: 8, identity: 0.765

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccttcgtccaggc	Protospacer
 **.* ************** *********.    

37. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to NC_028968 (Mycobacterium phage BrownCNA, complete genome) position: , mismatch: 8, identity: 0.765

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccttcgtccaggc	Protospacer
 **.* ************** *********.    

38. spacer 2.14|2656767|35|AP018664|CRISPRCasFinder,CRT matches to NC_049851 (Burkholderia phage BcepSauron, complete genome) position: , mismatch: 8, identity: 0.771

atgtccgct-gatcggcgtgatcccgcgcggcacgc	CRISPR spacer
-catcggccagatcggcgtgatcacgcgcggtacgg	Protospacer
 ..** **. ************* *******.*** 

39. spacer 2.14|2656767|35|AP018664|CRISPRCasFinder,CRT matches to NC_049850 (Burkholderia phage BcepSaruman, complete genome) position: , mismatch: 8, identity: 0.771

atgtccgct-gatcggcgtgatcccgcgcggcacgc	CRISPR spacer
-catcggccagatcggcgtgatcacgcgcggtacgg	Protospacer
 ..** **. ************* *******.*** 

40. spacer 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

----tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
acagtcc----cgcgaaggacggcgcgatgacggcgg	Protospacer
    * *    ************ *********.** 

41. spacer 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_011881 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence) position: , mismatch: 8, identity: 0.758

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
tgacgctcgcgaagttcggggcgatgacgacca	Protospacer
** .*  *******  ***************  

42. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to KJ567045 (Mycobacterium phage Emerson, complete genome) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ttcgacctgctgcgcaacgccaaggcggcggca	Protospacer
 **** **************** ***  .*.* 

43. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ggcgacctgctgcgcaacgccatcgcctacacc	Protospacer
. *** ***************** **..  ***

44. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ggcgatctgctgcgcaacgccatcgcctacacc	Protospacer
. *** ***************** **..  ***

45. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ggcgacctgctgcgcaacgccatcgcctacacc	Protospacer
. *** ***************** **..  ***

46. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ggcgacctgctgcgcaacgccatcgcctacacc	Protospacer
. *** ***************** **..  ***

47. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ggcgatctgctgcgcaacgccatcgcctacacc	Protospacer
. *** ***************** **..  ***

48. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 8, identity: 0.758

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
accgccgccctgcgcaacggcatggccctgacc	Protospacer
*.**   . ********** ******.******

49. spacer 2.28|2657678|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

cgtatggaacgcctgaaggccgcgcaggcggaac	CRISPR spacer
cgccgggaacgcctggacgccgcgcaggcggccg	Protospacer
**.  **********.* *************   

50. spacer 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

----tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
acagtcc----cgcgaaggacggcgcgatgacggcgg	Protospacer
    * *    ************ *********.** 

51. spacer 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_011881 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence) position: , mismatch: 8, identity: 0.758

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
tgacgctcgcgaagttcggggcgatgacgacca	Protospacer
** .*  *******  ***************  

52. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MT897910 (Mycobacterium phage VioletZ, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

53. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MT818419 (Mycobacterium phage Lolalove, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

54. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MN428050 (Mycobacterium phage Apex, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

55. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MK524486 (Mycobacterium phage Waleliano, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

56. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MN234171 (Mycobacterium phage Magpie, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

57. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MH513970 (Mycobacterium phage Hangman, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

58. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to KX589269 (Mycobacterium phage Fortunato, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

59. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MT639648 (Mycobacterium phage Heath, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

60. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to NC_042035 (Mycobacterium phage Zemanar, complete sequence) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

61. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to NC_022331 (Mycobacterium phage Bane1, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

62. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to KF279413 (Mycobacterium phage Bane2, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

63. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to KF493881 (Mycobacterium phage JAMaL, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

64. spacer 2.11|2656570|34|AP018664|CRISPRCasFinder,CRT matches to MT310870 (Mycobacterium phage RawrgerThat, complete genome) position: , mismatch: 9, identity: 0.735

-agatgctcataaacggcctcgccttcgtctcccg	CRISPR spacer
taggt-ctcataaacggcctggccctcgtccaggc	Protospacer
 **.* ************** ***.*****.    

65. spacer 2.12|2656636|33|AP018664|CRISPRCasFinder,CRT matches to NZ_CP020716 (Cnuibacter physcomitrellae strain XA(T) plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ccggatgcgactgacgatcgggtcaagcagatg-----	CRISPR spacer
ccggatgcgactgaccatcggatc-----tctgtccgc	Protospacer
*************** *****.**       **     

66. spacer 2.15|2656834|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP043439 (Cupriavidus campinensis strain MJ1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

cgctgcagcactacgccggccgcgtagagacctt	CRISPR spacer
aagtgcagcacaacgccagccgcgtagtgggcat	Protospacer
 . ******** *****.********* *. * *

67. spacer 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.727

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
cggtgggcgctaaggccggggcgatgaacgcct	Protospacer
.* ******* **** ***********  .* .

68. spacer 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
tataaagcgcgaaggacgcgccgatgacgatga	Protospacer
*.. ..************ * *********.* 

69. spacer 2.19|2657086|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
tataaagcgcgaaggacgcgccgatgacgatga	Protospacer
*.. ..************ * *********.* 

70. spacer 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MH598512 (Bacillus phage Wes44, complete genome) position: , mismatch: 9, identity: 0.735

ttcatcatgaaaagtattaccgctgatactgacg	CRISPR spacer
ttccgtgcaaaaagtattaccgctaatacagaca	Protospacer
***  ....***************.**** ***.

71. spacer 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MG784342 (Bacillus phage Carmen17, complete genome) position: , mismatch: 9, identity: 0.735

ttcatcatgaaaagtattaccgctgatactgacg	CRISPR spacer
ttccgtgcaaaaagtattaccgctaatacagaca	Protospacer
***  ....***************.**** ***.

72. spacer 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_017976 (Bacillus phage PBC1, complete genome) position: , mismatch: 9, identity: 0.735

ttcatcatgaaaagtattaccgctgatactgacg	CRISPR spacer
ttctatggcaaaagtattaccgctaatacagaca	Protospacer
***  ..  ***************.**** ***.

73. spacer 2.23|2657348|35|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MT310896 (Microbacterium phage Lynlen, complete genome) position: , mismatch: 9, identity: 0.743

tctcacgcgcagccagcggcgcaatctactcgcga	CRISPR spacer
cgactaccgcagccagcggtgaaatctactcgcgc	Protospacer
.  *   ************.* ************ 

74. spacer 2.25|2657482|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 9, identity: 0.735

---acgattgggcgtccgattatgccgacgccttccg	CRISPR spacer
tgcccgttc---tgtccggtcatgccgacgccttccg	Protospacer
    ** *.   .*****.*.****************

75. spacer 2.25|2657482|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 9, identity: 0.735

---acgattgggcgtccgattatgccgacgccttccg	CRISPR spacer
tgcccgttc---tgtccggtcatgccgacgccttccg	Protospacer
    ** *.   .*****.*.****************

76. spacer 2.25|2657482|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 9, identity: 0.735

---acgattgggcgtccgattatgccgacgccttccg	CRISPR spacer
tgcccgttc---tgtccggtcatgccgacgccttccg	Protospacer
    ** *.   .*****.*.****************

77. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 9, identity: 0.727

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
atcgagctgctgcgcaacgccttgccgcccgag	Protospacer
*****.*************** ** * *. .  

78. spacer 2.27|2657613|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

atcgaactgctgcgcaacgccatggctctgacc	CRISPR spacer
ggcgacctgctgcgcaacgccatcgcctacacg	Protospacer
. *** ***************** **..  ** 

79. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 9, identity: 0.735

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
gcgtccttcttgcgcatgtctttgagacgaaaga	Protospacer
* ****************** *** **..  .* 

80. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 9, identity: 0.735

gggtccttcttgcgcatgtcgttgcgataccggc	CRISPR spacer
gcgtccttcttgcgcatgtctttgagacgaaaga	Protospacer
* ****************** *** **..  .* 

81. spacer 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.727

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
cggtgggcgctaaggccggggcgatgaacgcct	Protospacer
.* ******* **** ***********  .* .

82. spacer 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
tataaagcgcgaaggacgcgccgatgacgatga	Protospacer
*.. ..************ * *********.* 

83. spacer 2.42|2658610|33|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

tgctgggcgcgaaggacggggcgatgacgacgc	CRISPR spacer
tataaagcgcgaaggacgcgccgatgacgatga	Protospacer
*.. ..************ * *********.* 

84. spacer 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgtaacgtcgatcggcatcaacgacgccaata	CRISPR spacer
aaaagcacgtcgatcggcatcaaggacgccagcg	Protospacer
.  .  ***************** *******...

85. spacer 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.706

gtcgtaacgtcgatcggcatcaacgacgccaata	CRISPR spacer
aaaagcacgtcgatcggcatcaaggacgccagcg	Protospacer
.  .  ***************** *******...

86. spacer 2.7|2656306|34|AP018664|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgtaacgtcgatcggcatcaacgacgccaata	CRISPR spacer
aaggcggcgacgatcggcgtcaacgacgccacca	Protospacer
.  *...** ********.************ .*

87. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
acacccgccgcggcgccgacgtccaccgcctcgg	Protospacer
    ******** ************ ** *.*  

88. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
ggggccgccgcgccgccgccgtcctgctgatggg	Protospacer
 * *************** ***** ** * .   

89. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
ggggccgccgcgccgccgccgtcctgctgatggg	Protospacer
 * *************** ***** ** * .   

90. spacer 2.10|2656504|34|AP018664|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgccgccgcgccgccgacgtccagcggccccc	CRISPR spacer
acacccgccgcggcgccgacgtccaccgcctcgg	Protospacer
    ******** ************ ** *.*  

91. spacer 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MN270258 (Streptococcus phage phi-SgaBSJ27_rum, complete genome) position: , mismatch: 10, identity: 0.706

ttcatcatgaaaagtattaccgctgatactgacg	CRISPR spacer
ataatcatgaaacgtattaccgctaatcaatatc	Protospacer
 * ********* ***********.**    *. 

92. spacer 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MN270259 (Streptococcus phage phi-SgaBSJ31_rum, complete genome) position: , mismatch: 10, identity: 0.706

ttcatcatgaaaagtattaccgctgatactgacg	CRISPR spacer
ataatcatgaaacgtattaccgctaatcaatatc	Protospacer
 * ********* ***********.**    *. 

93. spacer 2.30|2657813|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054603 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

tctatgaaattcagcgccgcgccgggcggcacgt	CRISPR spacer
ctttgcaggctcagcgccgcgccggggtgcacgt	Protospacer
..*   *...****************  ******

94. spacer 2.30|2657813|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049043 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_6, complete sequence) position: , mismatch: 10, identity: 0.706

tctatgaaattcagcgccgcgccgggcggcacgt	CRISPR spacer
gtgatcgcggtcagcgccgcgccgggtgccacgt	Protospacer
 . ** . . ****************.* *****

95. spacer 2.22|2657282|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MN270269 (Streptococcus phage phi-SsuHCJ3_rum, partial genome) position: , mismatch: 11, identity: 0.676

ttcatcatgaaaagtattaccgctgatactgacg	CRISPR spacer
acaatcatgaaacgtattaccgctaatcaatatc	Protospacer
 . ********* ***********.**    *. 

96. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MT498057 (Microbacterium phage Cicada, complete genome) position: , mismatch: 11, identity: 0.676

gggtccttcttgcgcatgtcgttgcg-ataccggc	CRISPR spacer
ccgtccttcttgcgcttggcgttgcgcgcgtcca-	Protospacer
  ************* ** ******* ....* . 

97. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MK016497 (Microbacterium phage Johann, complete genome) position: , mismatch: 11, identity: 0.676

gggtccttcttgcgcatgtcgttgcg-ataccggc	CRISPR spacer
ccgtccttcttgcgcttggcgttgcgcgcgtcca-	Protospacer
  ************* ** ******* ....* . 

98. spacer 2.32|2657945|34|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to MK016495 (Microbacterium phage Goodman, complete genome) position: , mismatch: 11, identity: 0.676

gggtccttcttgcgcatgtcgttgcg-ataccggc	CRISPR spacer
ccgtccttcttgcgcttggcgttgcgcgcgtcca-	Protospacer
  ************* ** ******* ....* . 

99. spacer 2.39|2658411|35|AP018664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 11, identity: 0.686

gaccttcgccgccgcctcacttccgaaaacggagt	CRISPR spacer
cgagcacgccgccgcctgacctccgaaaacgaaag	Protospacer
 .  . *********** **.**********.*. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 68953 : 177717 96 Staphylococcus_phage(14.29%) protease,integrase,tRNA,transposase attL 105705:105720|attR 185366:185381
DBSCAN-SWA_2 329935 : 392128 51 Klosneuvirus(10.0%) tail,holin,head,tRNA,protease,capsid,portal NA
DBSCAN-SWA_3 1776969 : 1785800 11 Azospirillum_phage(12.5%) NA NA
DBSCAN-SWA_4 1914247 : 1983632 58 Lactococcus_phage(22.22%) protease,tRNA,transposase NA
DBSCAN-SWA_5 2033503 : 2041218 8 Stx2-converting_phage(50.0%) NA NA
DBSCAN-SWA_6 2624900 : 2697373 48 Paenibacillus_phage(16.67%) protease,transposase NA
DBSCAN-SWA_7 3130966 : 3150446 17 Lactococcus_phage(33.33%) integrase,transposase attL 3131486:3131502|attR 3158027:3158043
DBSCAN-SWA_8 3274919 : 3286764 8 Gordonia_phage(16.67%) NA NA
DBSCAN-SWA_9 3564694 : 3591719 22 uncultured_Mediterranean_phage(40.0%) integrase,transposase attL 3576650:3576665|attR 3599652:3599667
DBSCAN-SWA_10 4211530 : 4220961 10 Tupanvirus(16.67%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. AP018666
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3144 : 55218 48 Escherichia_phage(20.0%) integrase,transposase NA
DBSCAN-SWA_2 141257 : 189102 37 Escherichia_phage(22.22%) integrase,transposase,protease attL 137843:137858|attR 179349:179364
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. AP018665
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3494 : 39872 30 Leptospira_phage(27.27%) transposase,integrase NA
DBSCAN-SWA_2 128344 : 194461 59 Acanthocystis_turfacea_Chlorella_virus(12.5%) transposase,integrase attL 181923:181941|attR 204945:204963
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage