CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018562	Staphylococcus argenteus 58113 DNA, complete genome	10 crisprs	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	1	7	8	1
AP018563	Staphylococcus argenteus 58113 plasmid p1 DNA, complete genome	0 crisprs	NA	0	0	0	0
AP018564	Staphylococcus argenteus 58113 plasmid p2 DNA, complete genome	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP018562_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_1

46523-46850

TypeIII

Consensus_repeat	Method
TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	PILER-CR
TATTCGATAACTACCCCGAAGAANAGGGGACGAGAAC	CRT
ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	CRISPRCasFinder

4 spacers

cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT

The CRISPR arrays of AP018562_1

>merge|AP018562|1|46523-46850|PILER-CR,CRT,CRISPRCasFinder
TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAACCTATAATAGTTACTGCTTTTGTAACCGTCCATATCATTCGATAACTACCCCGAAGAAGAGGGGACGAGAACAAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTATATTCGATAACTACCCCGAAGAAGAGGGGACGAGAACTGCCCACTTAATTAATTCATCTAGTCTCATTTCTTTATTCGATAACTACCCCGAAGAAAAGGGGACGAGAACTTAAAGATCTCAACAATAGCGTCCCATATTTTCTGTATTCGATAAATACCCCGGAGAACAGGGGGCGAAAAC

>AP018562|1|1|46523-46778|PILER-CR
TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	CTATAATAGTTACTGCTTTTGTAACCGTCCATAT
CATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTA
TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	TGCCCACTTAATTAATTCATCTAGTCTCATTTCTT
TATTCGATAACTACCCCGAAGAAAAGGGGACGAGAAC

>AP018562|1|1|46523-46850|CRT
TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	CTATAATAGTTACTGCTTTTGTAACCGTCCATAT
CATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTA
TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	TGCCCACTTAATTAATTCATCTAGTCTCATTTCTT
TATTCGATAACTACCCCGAAGAAAAGGGGACGAGAAC	TTAAAGATCTCAACAATAGCGTCCCATATTTTCTG
TATTCGATAAATACCCCGGAGAACAGGGGGCGAAAAC

>AP018562|1|1|46524-46850|CRISPRCasFinder
ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	CTATAATAGTTACTGCTTTTGTAACCGTCCATATC
ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTAT
ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT
ATTCGATAACTACCCCGAAGAAAAGGGGACGAGAAC	TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT
ATTCGATAAATACCCCGGAGAACAGGGGGCGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD84909.1\|52477_54043_+\|2,4-dichlorophenol-6-monooxygenase	unknown	unknown	gnl\|CDD\|366675
AP018562.1\|BBD84901.1\|45635_46391_+\|CRISPR-associated-endoribonuclease	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
AP018562.1\|BBD84904.1\|49486_49645_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD84903.1\|49223_49400_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD84895.1\|39068_41354_+\|type-III-A-CRISPR-associated-protein	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
AP018562.1\|BBD84893.1\|37856_38762_+\|type-II-CRISPR-associated-endonuclease	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
AP018562.1\|BBD84911.1\|55168_55798_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD84897.1\|41783_42428_+\|type-III-A-CRISPR-associated-RAMP-protein	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
AP018562.1\|BBD84892.1\|35831_36575_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
AP018562.1\|BBD84894.1\|38761_39067_+\|CRISPR-associated-endonuclease	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
AP018562.1\|BBD84898.1\|42498_43347_+\|type-III-A-CRISPR-associated-RAMP-protein	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
AP018562.1\|BBD84908.1\|51836_52166_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225612
AP018562.1\|BBD84896.1\|41356_41782_+\|type-III-A-CRISPR-associated-protein	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
AP018562.1\|BBD84900.1\|44371_45676_+\|type-III-A-CRISPR-associated-protein	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
AP018562.1\|BBD84902.1\|47585_49112_+\|reverse-transcriptase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
AP018562.1\|BBD84899.1\|43331_44372_+\|type-III-A-CRISPR-associated-RAMP-protein	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
AP018562.1\|BBD84906.1\|50323_51310_-\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
AP018562.1\|BBD84905.1\|49831_50113_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD84910.1\|54205_54631_+\|HTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|197670
AP018562.1\|BBD84907.1\|51617_51821_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD84909.1\|52477_54043_+\|2,4-dichlorophenol-6-monooxygenase	gnl\|CDD\|366675	pfam01494, FAD_binding_3, FAD binding domain. This domain is involved in FAD binding in a number of enzymes.	2.93422e-87
AP018562.1\|BBD84901.1\|45635_46391_+\|CRISPR-associated-endoribonuclease	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.9996e-14
AP018562.1\|BBD84895.1\|39068_41354_+\|type-III-A-CRISPR-associated-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
AP018562.1\|BBD84893.1\|37856_38762_+\|type-II-CRISPR-associated-endonuclease	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.18681e-113
AP018562.1\|BBD84897.1\|41783_42428_+\|type-III-A-CRISPR-associated-RAMP-protein	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.36392e-106
AP018562.1\|BBD84892.1\|35831_36575_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.7114e-71
AP018562.1\|BBD84894.1\|38761_39067_+\|CRISPR-associated-endonuclease	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	1.36081e-20
AP018562.1\|BBD84898.1\|42498_43347_+\|type-III-A-CRISPR-associated-RAMP-protein	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.19091e-35
AP018562.1\|BBD84908.1\|51836_52166_+\|transcriptional-regulator	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	9.01883e-20
AP018562.1\|BBD84896.1\|41356_41782_+\|type-III-A-CRISPR-associated-protein	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	9.85864e-21
AP018562.1\|BBD84900.1\|44371_45676_+\|type-III-A-CRISPR-associated-protein	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	6.39347e-128
AP018562.1\|BBD84902.1\|47585_49112_+\|reverse-transcriptase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	4.24644e-33
AP018562.1\|BBD84899.1\|43331_44372_+\|type-III-A-CRISPR-associated-RAMP-protein	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	6.57487e-17
AP018562.1\|BBD84906.1\|50323_51310_-\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	2.29059e-97
AP018562.1\|BBD84910.1\|54205_54631_+\|HTH-domain-containing-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.04707e-13

>AP018562.1|BBD84901.1|45635_46391_+|CRISPR-associated-endoribonuclease
MINKITVELNLPNSIRFQYLGSILHGVLMDYLPNDIADQLHHEFAYSPLKQRIYHKNKKVIWEIVCMSDRLFNEIAKLFTSKNRLFLKYYQVYIEIYSFNIEIYSFNIEKVNVQNIMNQLLQTEELNRYVRINIQTPMSFKYQSSYMIFPEVKRFFRSIMIQFDAFFEEYKMYDKETLDFLEKNINIVDYKLKSTRFNLEKVKIPSFTGEIVFKIKGPLPFLQLTHFLLKFGEFSGSGMKTSLGMGKYSII
>AP018562.1|BBD84900.1|44371_45676_+|type-III-A-CRISPR-associated-protein
MKVLFSPIGNSDPWSNDRDGAMLHIVRHYQPDIVVLFFTESIWEGNKNIPGRKNFDWESIILKVSPGTKVNIKVDNIKYENDFDSYKDLFHFYINEIRTEYSEAEILLNVTSGTPQMESTLCLEYISNPNNMQCIQVSTPAPTEGPRRSFAKPETLIEDLNKVNDNEKVATNRSKSIDIISFREVMVRSQIKGLVDNYDYEGALNLVSNQKSFRNGKLLRKKLLALTNQIKTHEVFPEINVKYNNAALKKSLFHYLLVNMRYNRLDVAETLIRVKSIAEFILKTYLENHWTHLMIEVDGKPYLNAEDNLSFIYKYKLLLEKRKQNLDTSRILGLPAFIDMLSILEPKSKLLKEVKAVNDINGLRNSIAHNLEVLHLDENKNYKKIMLSVEAIKNMLNISFPEIDEQDYNYFEEKIRNLKNYYDKQNYSRIKPTK
>AP018562.1|BBD84899.1|43331_44372_+|type-III-A-CRISPR-associated-RAMP-protein
MVGGISMTIKNYEVVIKTLGPVHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNLLDTYQNFLRNPPKNPRENGLKDYLDAQNVKQSEWKAFVSYSEKVNQGKKYGNIRPKPLNDLHLMIRDGQNKVYLPGSSIKGAIKIALVSKYDNEKNKDIYSKIKVSDSEPIDESHLAIYQKIDINKSEKPMPLYRECVDVDTEIKFKLTIEDEIYSINEIEQSIRDFYKNYYDKWLVGFKETKGGRRFALEGGMPDVLNQNILFLGAGAGFVSKTTHYQLKSREQAKRDSFKELTKKFRRTYGKMKEIPSNVPVALKGTTNQSRRTSYQQGMCKISFQELNNEVL
>AP018562.1|BBD84898.1|42498_43347_+|type-III-A-CRISPR-associated-RAMP-protein
MSDGEMTITSDTLFSALSIETLQLGKETGWLLNDLIISDTFPYENELYYLPKPLIKIESKEEGNHKAFKKLKYVPVHHYNQYLNGEISAEDATDLNDIFNIGYFSLQTKVSLSAQEIDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDHLKDIMTSLQYSGLGGKRNAGYGQFEYEMVNNQQLFKLLNQKGEYSILLSTAMAKEEEIESALKEARYILNKRSGFIQSTNYSEILVKKSDFYSFSSGSVFKNIFNGDIFNVGHNGKHPVYRYAKPLWLEV
>AP018562.1|BBD84897.1|41783_42428_+|type-III-A-CRISPR-associated-RAMP-protein
MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRSLLAKHFGLKMKQENHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENAINRLTAVANPRQIERVTRGSEFDFVLIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFNDINIETVVGEYDSTNLKIK
>AP018562.1|BBD84896.1|41356_41782_+|type-III-A-CRISPR-associated-protein
MILAKTKSGKTIDLTFAHEIVKNNVKNVKDRRGREKQVLFNGLTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIQKESKKFFLDYCKYFEALVAYAKYYQKED
>AP018562.1|BBD84895.1|39068_41354_+|type-III-A-CRISPR-associated-protein
MEVTMDKKTTLMYGSLLHDIGKIIYRSNGHAFARGTHSKLGHKFLSQFSEFKDNELIDSVAYHHYKELAKANLANDNTAYITYIADNIASGIDRRDIIEEGDEEYEKQPFNFDKYTPLYSVFNIVNSEKLKQISGKFKFSNESNIEYPKTENIQYSSGNYTALMKDMSYDLEHKLSIKEDTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFTKYENTKAFYQKEAFLLLSMDMSGIQDFIYNISGSKTLKSLRSRSFYLELMLEVIVDQLLEKLELTRANLLYTGGGHAYLLVSNTDKVKEKINQFNTELKNWFMLEFTTDLSLSIAFEKCSGSDLMNTNGNYRTIWRNVSSKLSDIKAHKYSAEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFDKFISVIDYEEAEILAQNNNQIRIYSKNKPYIGVGISTNLWMCDYDYASQNQDMREKSIGSYVEREEGIKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITTIYSGGDDLFLIGAWDDIIEASVYINDKFKKFTLGKLTMSAGVGMFSGKYPVSKMAFETGLLEEAAKTDEKNQIALWVQEKVYNWDEFKKYILEEKLLVLQQGFLQTDEHGKAFIYKMLALLRNNEVINIARLAYLLARSKMSEEFTSKIFNWAQNDKDKDQLITALEYYVYQIREAD
>AP018562.1|BBD84894.1|38761_39067_+|CRISPR-associated-endonuclease
MYLLVSFDLPRDTKFERKMASVYRTRLLELGFSMKQFSLYERYVSDVQKKDKILEILQQEIPDTGSITLYVLPDEVNNSQITILGKEVKVVVRKEPKLIFL
>AP018562.1|BBD84893.1|37856_38762_+|type-II-CRISPR-associated-endonuclease
MKDVIYVENHYFVTVKENSIKFRNVIDKSEKFYLFEEIEAIIFDHYKSYFSHKLVIKCIENDIAIIFCDKKHSPLTQLISSYGMTHRLQRIQSQFQLSGRTRDRIWKKIVVNKIINQSKCLENNLHNENVKLLVNLAKDVSSGDKSNKEAQAARIYFKDLYGKQFKRGRYNDIINSGLNYGYSILRSFIKKELALHGFEMSLDIKHHSKENPFNLADDIIEVFRPFIDNIVYDIVFKNNINTFDINEKKLLLNVLYEKCIIDKKVVRLLDSIKIVVQSLIKCYDENTPTPLSLPKMIEVGN
>AP018562.1|BBD84892.1|35831_36575_-|type-I-restriction-endonuclease-subunit-R
MPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVVVTSDGINTKVGSLTANYDRFMTWRSKDGETESSSSLASLDVLIHGMLNPETLLDLIRYFVLFQDNGKGHISKILAAYHQYYAVNKAVDRALLASSGRGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVITDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESDGIVFTTMQNLNLNKMKRPWRP
>AP018562.1|BBD84902.1|47585_49112_+|reverse-transcriptase
MDKLKLITEMSNKEARAFLLKSQSYCSIDLPGYFNFDCILEEINNKFEKINENNVKNYVKMNNLKEQDDINCKIYANKDGNFDWRPLEIINPYLYIYLVRYLTRTDVWYQLVNCFNNNKVERITVASIPVESQISTKDKKEQIYNWWDEVEQESIVYALDYKKIIHLDISNCYGSIYTHVISWAIHGKNHAKNQKRNKNLLGNKIDYLIQLMQNNQTNGIPQGSILMDFVAEIILTYADKLLENKIGDYDIDYKIIRYRDDYRIFANDSETINIVTKALNVVLMTLNFKLNSKKTVYSEDIIISSIKEDKISYQDIISSIYTKISPNELVFHLNLPKHLLKILMFSKRYPNSGSVMKMLNEFHVYRLDDIKLNEHTYNIQCISILTEIMMTNLKTTPLCIAIISSFINSFDICEKQKIIEKIIKKVSSTPNVDLVNIWLQRLTIKELNSLKYDTNLCEFVCGNREKIFNISWIKGIKNQVELKNIIDTDYIENMENIISPEETSLFLY
>AP018562.1|BBD84903.1|49223_49400_+|hypothetical-protein
MSTYNYEEVVKKLECVDEYILQDKIKRFRNLDIRNMNNNDLNKEIFKTLCDGKKVLVI
>AP018562.1|BBD84904.1|49486_49645_+|hypothetical-protein
MQNPQDFWNPPEKLVKKPGRLNKIGESLLYVSPIDPYVCINELKIKPGQFFY
>AP018562.1|BBD84905.1|49831_50113_+|hypothetical-protein
MQKNFFDLPPEVIQDAWAYISTFDKKSYNVCFRSEIAKKKMNLVGGIIAKLDDKNKINCLLFTPGYDEKYNETIFYELGSDYQKELFPEIKKY
>AP018562.1|BBD84906.1|50323_51310_-|tRNA-dihydrouridine-synthase
MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSDDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVLEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL
>AP018562.1|BBD84907.1|51617_51821_+|hypothetical-protein
MGDLKQSLKGLGWWDLFFAVPMFLLFAYLPNYNFITIFLNIVIIIFFSIGLILTTHIMIDKIKSNSK
>AP018562.1|BBD84908.1|51836_52166_+|transcriptional-regulator
MIKHKTEGAITMATEQDINDLFLNLVNSSDVKTRKMMGEYIIYYDGVVIGGLYDNRLLVKATQSARHQLQDNTLVSPYPGAKEMILIPDFAEATNLTDIFKIVKNDLKK
>AP018562.1|BBD84909.1|52477_54043_+|2,4-dichlorophenol-6-monooxygenase
MNNRDNHTSVLVVGGSLVGLSTSAFLSNQKVKNIVIERHPSSALHPKAMGFTPRTMEIFDKIDIAKLIPQSPSNFRLRRARIESLDGEWFEETEWTPGDVDESKVSYSPFNGAAIAQDKLEPIIMNRAIELGSDIRMNTELVSFSQDKYGVTATVRNRENNEEYEITADYLVAADGNRSPIREKLGIEREGVGDLRIMRSVLFKAPLDAYLESGVRQFDIDQEDLKAFLTSYGDSRWVLMFKDDIERTEKEMHKDIIKAIGRNDLDIEIITSGRWELAALIAKTFSVGRIFLAGDSAHTLPPTRGGFGANTGIQDAYNLAWKLAAVISKKATPDLLDTYDKERRPVANMRHDQTFARPDYKSYTQNNYDIAVIDDDAIEFGELYRSDAIIGADDSLPSALRLDQWKGQPGTRVPYLTFNNQNKESSTLDIVGDNWIILTADKVWKDIAQEIVGQFEATIDIFQVTNKNVGKQTFCDAFGISEEGAVVVRPDGVIAWRSENRPEDTRGILKSALDKLLFKDK
>AP018562.1|BBD84910.1|54205_54631_+|HTH-domain-containing-protein
MTNYAVQTIREIQEIALKSKFDANEAIQDLGLSAQQGRIIKYIYTHQDQSVSQKDLADYFNVSTASIGGSLKVLEKHNYIKRTRKHENARQYDIIVLPLGESIIDDFDKKIKENNEKYKSFLSEEDFKTLHELLVKIKTQF
>AP018562.1|BBD84911.1|55168_55798_+|hypothetical-protein
MFENIDEQVNDMLISLVVPVFALLVIGGIIWALIEGIVHISKKNKAIDNFFNQVNKVSETYKFATTFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGIIFLMPYGLCFLPFYTQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKVTNKNKEAETVDNTIEG

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Crispr_ID: AP018562_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_2

662933-663012

Orphan

Consensus_repeat	Method
ACTTTCCGCCAGCTTCTGTGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018562_2

>merge|AP018562|2|662933-663012|CRISPRCasFinder
ACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTAATGTCAGCTAACTTTCCGTCAGCTTCTGTGTTGG

>AP018562|2|2|662933-663012|CRISPRCasFinder
ACTTTCCGCCAGCTTCTGTGTTGG	GGCCCCGCCAACTTGCACATTAATGTCAGCTA
ACTTTCCGTCAGCTTCTGTGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD85446.1\|654768_655521_-\|membrane-protein	unknown	unknown	gnl\|CDD\|315961
AP018562.1\|BBD85449.1\|657636_658539_+\|teichoic-acids-export-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224596
AP018562.1\|BBD85462.1\|673147_673510_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit	unknown	unknown	gnl\|CDD\|184702
AP018562.1\|BBD85459.1\|670325_671342_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
AP018562.1\|BBD85456.1\|667391_668225_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
AP018562.1\|BBD85454.1\|663523_665251_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
AP018562.1\|BBD85452.1\|660858_661257_+\|glycerol-3-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|173922
AP018562.1\|BBD85453.1\|661340_662585_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
AP018562.1\|BBD85445.1\|654049_654694_+\|metal-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224240
AP018562.1\|BBD85447.1\|655757_656522_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224833
AP018562.1\|BBD85458.1\|669378_670329_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
AP018562.1\|BBD85448.1\|656585_657380_-\|teichoic-acids-export-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184131
AP018562.1\|BBD85444.1\|653184_653928_-\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
AP018562.1\|BBD85450.1\|658733_659738_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|224799
AP018562.1\|BBD85455.1\|665618_666848_+\|nucleoside-permease	unknown	unknown	gnl\|CDD\|224883
AP018562.1\|BBD85461.1\|672570_673155_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
AP018562.1\|BBD85457.1\|668495_669293_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
AP018562.1\|BBD85463.1\|673626_674124_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85460.1\|671560_672526_+\|dihydroxyacetone-kinase-subunit	unknown	unknown	gnl\|CDD\|237724
AP018562.1\|BBD85451.1\|659734_660802_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|132997

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD85446.1\|654768_655521_-\|membrane-protein	gnl\|CDD\|315961	pfam13398, Peptidase_M50B, Peptidase M50B-like. This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B.	2.25871e-29
AP018562.1\|BBD85449.1\|657636_658539_+\|teichoic-acids-export-ABC-transporter-permease-subunit	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	6.21446e-60
AP018562.1\|BBD85462.1\|673147_673510_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	3.47738e-52
AP018562.1\|BBD85459.1\|670325_671342_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.77422e-79
AP018562.1\|BBD85456.1\|667391_668225_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	2.13657e-76
AP018562.1\|BBD85454.1\|663523_665251_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.12308e-162
AP018562.1\|BBD85452.1\|660858_661257_+\|glycerol-3-phosphate-cytidylyltransferase	gnl\|CDD\|173922	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.	2.10132e-65
AP018562.1\|BBD85453.1\|661340_662585_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.22359e-89
AP018562.1\|BBD85445.1\|654049_654694_+\|metal-dependent-transcriptional-regulator	gnl\|CDD\|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	3.66176e-47
AP018562.1\|BBD85447.1\|655757_656522_+\|glycosyltransferase	gnl\|CDD\|224833	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane].	3.79617e-95
AP018562.1\|BBD85458.1\|669378_670329_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.24409e-77
AP018562.1\|BBD85448.1\|656585_657380_-\|teichoic-acids-export-ATP-binding-protein	gnl\|CDD\|184131	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH.	0
AP018562.1\|BBD85444.1\|653184_653928_-\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	4.97485e-99
AP018562.1\|BBD85450.1\|658733_659738_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	5.78102e-35
AP018562.1\|BBD85455.1\|665618_666848_+\|nucleoside-permease	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.4834e-143
AP018562.1\|BBD85461.1\|672570_673155_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	3.14061e-82
AP018562.1\|BBD85457.1\|668495_669293_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	7.57943e-137
AP018562.1\|BBD85460.1\|671560_672526_+\|dihydroxyacetone-kinase-subunit	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
AP018562.1\|BBD85451.1\|659734_660802_+\|glycosyl-transferase	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	4.34577e-13

>AP018562.1|BBD85453.1|661340_662585_-|D-alanyl-D-alanine-carboxypeptidase
MTPNAQAANSTETPVQVANQYGYAGLSAAYQPTSAINVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLNDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILANKVSKNTSDFVDLMNNKAKALGMTNTHFVNPTGAENSRLRTFAPTKYKNQERTVTTARDYAILDLHVLKETPKILDFTKQLAPTTHAVTYYTFNYSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGGEKQRNMMGNALMEQSFDQYKYVKILSKGEQKINGKKYYVENDLYDVLPNNFSKKDYKLVVDDGKAHVDYPRQFINKDYGPPTVDVHQPIIQKANAVAKNMWTEHPIFTIIGGACLVGGLALIIHMLIKLIFRKRK
>AP018562.1|BBD85452.1|660858_661257_+|glycerol-3-phosphate-cytidylyltransferase
MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFLKDKCEVIYLKRTEGISTTKIKQELYGKDAK
>AP018562.1|BBD85451.1|659734_660802_+|glycosyl-transferase
MRLTIIIPTLNNETTIRQLLVSIDSKEHYRILCIDGGSTDQTIPLVEKLQKELKHITLIQLQNASKASCINKGIKEIETTEGHYSDAFIVLNPTSILLPNKLDLLTSTFKNNENIDIVIGQRAIDYHGEWKLNDIDSYIKNNHIVTLSQLPELLSSLTFDNKLLSVKFADLRCDESVENVYNHEMLVKALQKATDIQLVSQLVIGDNQVNEADFNNVLELYQYSKEIMSVRQRVMEMLLLLEQRLIYSDLVDRQLFNTHLKRYLLLHPEMTETMISLVSDYIMSMQHSDYLSHNMFEIINTVEFLGVNWNKETYEKWREMLIQVGINRPSYRKFLIQLKGRKIVHQTKSILKRLN
>AP018562.1|BBD85450.1|658733_659738_+|CDP-glycerol-glycerophosphotransferase-family-protein
MMTFPEDILPIIKSLNTSLYDVTVLTAPKNKFHLSAINNLNVVEMSNKTLVKQIKALKSAQLIIIDNYYLLLGGYKKAPHQRVIQTWHASGALKNFGLTDNQVDLSNKAMIQQYRQVYQATDFYLVGSPNMAHCFKQSLAARDDQMLYFGIPRINKYFTVDREAIKTQLKEQYGIKNKLALYVPTYREDSADNREINKTYFENELPGYTLLNKLHPSIEVSESDQLTSIDTSTLMLMADLIISDYSSLPIEASLLNIPTIFYVYDESTYDKVRGLNKYYFGIPENYKVYSEADLITAIKANKHTLKPLFKDWHIYNTEHSLPQLLEYIDKMVTK
>AP018562.1|BBD85449.1|657636_658539_+|teichoic-acids-export-ABC-transporter-permease-subunit
MYSDSIYNNYYNTIKLSREIVKHLKVWFNGMSAIGTVFKEHVKNFYLIQRLAQFQVKIINHSNYLGVAWELINPVMQIMVYWMVFGLGIRSNAPIHGVPFVYWLLVGISMWFFINQGILEGTKAITQKFNQVSKMNFPLSIIPTYIVTSRFYGHLGLLLLVIIACMFTGIYPSIHIIQLLIYVPFCFFLTASVTLLTSTLGVLVRDTQMLMQAILRILFYFSPILWLPKNHGISGVIHEIMKYNPVYFIAESYRAAILYHEWYFMDHWKLMLYNFGIVAIFFAIGSYLHMKYRDQFADFL
>AP018562.1|BBD85448.1|656585_657380_-|teichoic-acids-export-ATP-binding-protein
MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKDFRNKLDESRFVIK
>AP018562.1|BBD85447.1|655757_656522_+|glycosyltransferase
MTVEETSNTSKVDILGVNFDNTTMLQMVENIKTFFAHQSTNNLFIVTANPEIVNYATTHQAYLELINRASYIVADGTGVVKASHRLNRSLSQRIPGIELMDECLKIAHVNHQKVFLLGATNEIVEAAQYALQQRYPNITFAHHHGYIDLEDETVVKRIELFKPDYIFVGMGFPKQEEWIMTHEQQFVSTVMMGVGGSLEVFAGAKKRAPFIFRKLNIEWVYRALIDWKRIGRLKSIPIFMYKIAKIKRKNKKSK
>AP018562.1|BBD85446.1|654768_655521_-|membrane-protein
MNYLTNFLNTTTELNIYIIVFVAIIYIVIHHFRHKPLLNYLDIILNYIPVLTHEFGHVLFNKIAGGRAKDLVIVTSPRERQQTLQQGFAVTQSRHLAGQWLTTLGGYLMPPLMLLIGLASSHYQIPSIFIFSYLLIFIYFLILTSRKGSPIIVITLISIMLYFILKDDNILAIQMIVTISYQFILGVLLGEVLQSSWTIAKLTIQRPSPQWDGSALKDLSHVPIFIYSTIWIIFNLYAVNILLKYTHLIS
>AP018562.1|BBD85445.1|654049_654694_+|metal-dependent-transcriptional-regulator
MLTEEKEDYLKAILTNNGDKNFVTNKILSQFLNIKPPSVSEMVGRLEKAGYVETKPYKGVRLTEDGLAHTLDIIKRHRLLELFLIEILKYNWEEVHQEAEILEHRISKLFVERLDSLLNFPETCPHGGVIPRNNEYKEKYVTTILNYEPGDLVTIKRVRDKTDLLVYLSSKDISIGNEVEIVSKDEMNKVIIIKRNDNVIIISYENAMNMFAEK
>AP018562.1|BBD85444.1|653184_653928_-|metal-ABC-transporter-ATP-binding-protein
MLETKDLNLFLGNKHVLKNISLSIPVRGEIIGIMGPNGAGKSSLIKSLIGEFNATGTKLLYNKPIQQQLQHITYIPQKAHIDLDFPISVEQVILSGCYKEIGWFRRPNKSARDKLKQLLSDLELETLRHRQISELSGGQLQRVLVARALMSESEVYFLDEPFVGIDFSSEKLIMTKIENLKQQGKLILIIHHDLSKAKQYFDRIILLNQTLRYFGDSEEAMSVTRLNETFMSSTDCSDPSQRSNITC
>AP018562.1|BBD85454.1|663523_665251_+|ABC-transporter-ATP-binding-protein
MKRENPLFFLFKKLTWPVGLIVAAITISSLGSLSGLLVPLFTGRIVDKFSVSHINWNLIALFGGIFVLNALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQLKMPFFDKNESGQLMSRLTDDTKVINEFISQKLPNLLPSIVTLIGSLIMLFILDWKMTLLTFITIPIFVLIMIPLGRVMQKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLELDNAHKNLNEIYKLGLKQAKIAAVVQPISGIVMLLTIAIILGFGALEIATGAITAGTLIAMIFYVIQLSMPLINLSTLVTDYKKAVGASSRIYEIMQEPIEPTEDLEDSKNVLIDDGVLSFEHVDFKYDVKKILDDVSFQILQGQVSAFVGPSGSGKSTIFNLIERMYEIESGDIKYGLESVYDIPLSKWRRKIGYVMQSNSMMNGTIRDNILYGINRHVTDEELINYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQRIDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTIVIAHRLSTIKKAGQIIFLDKGQVTGKGTHSELMASHDKYKNFVVSQKLTD
>AP018562.1|BBD85455.1|665618_666848_+|nucleoside-permease
MFLLINIIGLIVFLGIAVLFSRDRKNIQWTSIGILVVLNLFLAWFFIYFEWGQIVVKGAANGIAWVVQSAHAGTGFAFASFINVKMMDMAVTALFPILLIVPLFDILMYFNILPKIIGGIGWLLAKVTRQPKFESFFGIEMMFLGNTEALAVSSEQLKRMNEMRVLTIAMMSMSSVSGAIVGAYVQMVPGELVLTAIPLNIVNAIIVACLLNPVSVEEKEDIIYSLKNNEIERQPFFSFLGDSVLAAGKLVLIIIAFVISFVALADLFDRLINLITGLVAGWIGVKGSFGLDQILGVFMYPFALLLGLPFDEAWLVAQQMAKKIVTNEFVVMGEISKDIASYTPHHRAVITTFLISFANFSTIGMIIGTLKGIVDKKTSDFVSKYVPMMLLSGILVSLLTAAFVGLFAW
>AP018562.1|BBD85456.1|667391_668225_+|YitT-family-protein
MNKTVKDLILVVLGSFIFAAGVNAFIISGNLGEGGVTGLAIILYYAFHLSPAITNFVVNAVLIAIGYKFLSKRSMYLTILVTVLISIFLSLTESWQVETGNSIVNAIFGGLSVGLGIGVIILAGGTTAGTTILARIATKYLDVSTPYALLFFDMIVVAISLTVIPLDKVLVTVISLYIGTKVMEYVIEGLNTKKAMTIISTNPDKLAKAIDEQIGRGLTILNGHGYYTREEKDVLYVVISKTQVSKAKRLIKNIDKDAFLVIHDVRDVYGNGFLADE
>AP018562.1|BBD85457.1|668495_669293_+|ABC-transporter-ATP-binding-protein
MSRLHGQQVKIGYGDSTIINKLDVEIPDGKVTSIIGPNGCGKSTLLKALSRLLAVKEGEVFLDGQNIHTQSTKEIAKKIAILPQSPEVADGLTVGELVSYGRFPHQKGFGRLTEEDKKEIDWAMEVTGTDAFRHRSINDLSGGQRQRVWIAMALAQRTDIIFLDEPTTYLDICHQLEILELVQKLNQEQGCTIVMVLHDINQAIRFSDHLIAMKSGDIVAHGSTEDVLTQEILEKVFNIDVVLSKDPKTGKPLLVTYDLCRRAYS
>AP018562.1|BBD85458.1|669378_670329_+|iron-ABC-transporter-permease
MSILLVIALFISTLLGDAKIQASTILEAVFNYDPTNQQQNVINEIRIPRNIAAVIVGMALAVSGAIIQGVTRNGLADPALIGLNSGASFALALTYALLPGTSFLVLMFAGFLGAILGGAIVLMMGRSRRDGFNPMRIILAGAAVSAMLTALSQGIALAFRLNQTVTFWTAGGVAGTTWTHLKWAIPLIGVALLVILMFSKQLTILNLGESLATGLGQNVTVIRGICLIIAMILAGISVAIAGQVAFVGLMVPHIARFLIGTDYTKILPLTALLGGLLVLVADVIARYLGEAPVGAIISFIGVPYFLYLVKKGGRTI
>AP018562.1|BBD85459.1|670325_671342_+|iron-ABC-transporter-permease
MINSNNIRKQWIALVVFSVLLFLGCTWSITSGEYNIPVERFFKTLIGQGDPTDELILLDFRLPRMLITILAGAALSISGAIVQSVTKNPIAEPGILGINAGGGFAIALFIAIGKINADNFVYVLPLISILGGITTALIIFIFSFNKNEGVTPASMVLIGVGLQTALYGGSITIMSKFDDNQSEFIAAWFAGNIWGDEWPFVIAFLPWIIIIIPYLLIKSNTLNIIHTGDNIARGLGVKLSRERLILFFIAVTLSSAAVAVAGSISFIGLMGPHIAKRIVGPRHQLFLPIAILVGACLLVIADTIGKIALQPGGIPAGIVVAIIGAPYFLYLMYKTKNV
>AP018562.1|BBD85460.1|671560_672526_+|dihydroxyacetone-kinase-subunit
MKKLINKKETFLTDMLEGLLIAHPELDVVANTVVVKKAKKENGVAIVSGGGSGHEPAHAGFVAEGMLDAAVCGEVFTSPTPDKILEAIKAVDTGDGVLLVVKNYAGDVMNFEMAQELAEMEGIKVETVIVRDDIAVANEEQRRGVAGTVFVHKLAGYLAEKGHSLSDIKTRVEAFLPEIKSIGMAIEPPLVPTTGKYGFDIENDKMEIGIGIHGEKGIHREEMKDVEHIVEALFNELFKEVNYDDVILMVNGMGGTPLSELNIVTKYIQHHLVTRKVNVAKWFVGDYMTSLDMQGFSITILPNKPEYLEAFLAPTTSRYFK
>AP018562.1|BBD85461.1|672570_673155_+|dihydroxyacetone-kinase-subunit-L
MNVNEMKTRLLQLEETFKIHESELTELDRAIGDGDHGVNMVRGFSSVKDKIDDSSMQALLKSIGMALMSNVGGASGPLYGFSFVKMASVAKDDMNHQDIITLIKTFAEAISARGKVNLNEKTMYDVVARVAEKLENGETLSLNQLQQLADNTKDMVATKGRAAYFGEESKGYIDPGAQSMVFVLNALIGDENNG
>AP018562.1|BBD85462.1|673147_673510_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit
MAKIILVSHSKDIANGTKALLQQMAGDVDILALGGLTDGSIGTSFDLIQEALTDLDDDALCFYDIGSSEMNVDMAIEMYDGDYRVIKVDAPIVEGSFIAAVRLSVGGTVDDALAEIKQSF
>AP018562.1|BBD85463.1|673626_674124_+|hypothetical-protein
MQHLIKKHVLNGEFDLVRQLMSETDFMEFEEAYISSAHEVESMMFYTCILDMIKHEESSEMHDLAFLLLVYPLSEYEGALDSAYYHADASIKLTDGKEVKSLLQMLLLHAIPTPVISDKKAFDIAKQILKLDPNNNVARNVLKDTAKRMDNVVVDINELHQRNAR

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Crispr_ID: AP018562_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_3

695806-695890

Orphan

Consensus_repeat	Method
ACAACTGCATAAGAGCCCCTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018562_3

>merge|AP018562|3|695806-695890|CRISPRCasFinder
ACAACTGCATAAGAGCCCCTAATCGCTATAGCTCAAGGGGAAAAAGGAATACAGTTGGCAAAGCAACTGCATAAGAGCCCCTAAT

>AP018562|3|3|695806-695890|CRISPRCasFinder
ACAACTGCATAAGAGCCCCTAAT	CGCTATAGCTCAAGGGGAAAAAGGAATACAGTTGGCAAA
GCAACTGCATAAGAGCCCCTAAT

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD85483.1\|695930_697127_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341024
AP018562.1\|BBD85474.1\|685194_686202_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
AP018562.1\|BBD85488.1\|699575_699875_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372177
AP018562.1\|BBD85492.1\|701769_702453_-\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85487.1\|699079_699436_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
AP018562.1\|BBD85479.1\|692184_692901_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
AP018562.1\|BBD85477.1\|689338_691489_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
AP018562.1\|BBD85490.1\|700741_701308_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
AP018562.1\|BBD85486.1\|698545_698989_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
AP018562.1\|BBD85489.1\|699956_700499_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
AP018562.1\|BBD85481.1\|694089_694746_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
AP018562.1\|BBD85491.1\|701308_701767_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
AP018562.1\|BBD85482.1\|694832_695723_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
AP018562.1\|BBD85480.1\|692900_693380_+\|cupin	unknown	unknown	gnl\|CDD\|380376
AP018562.1\|BBD85485.1\|697728_698418_-\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85484.1\|697141_697630_+\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
AP018562.1\|BBD85475.1\|686830_687628_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
AP018562.1\|BBD85473.1\|684561_685179_+\|DUF47-domain-containing-protein	unknown	unknown	gnl\|CDD\|224310
AP018562.1\|BBD85476.1\|688071_688638_+\|membrane-protein	unknown	unknown	gnl\|CDD\|223742
AP018562.1\|BBD85478.1\|691592_691994_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD85483.1\|695930_697127_+\|MFS-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.83784e-101
AP018562.1\|BBD85474.1\|685194_686202_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	9.2875e-103
AP018562.1\|BBD85488.1\|699575_699875_+\|hypothetical-protein	gnl\|CDD\|372177	pfam12543, DUF3738, Protein of unknown function (DUF3738). This family of proteins is found in bacteria. Proteins in this family are typically between 251 and 457 amino acids in length.	0.00476406
AP018562.1\|BBD85487.1\|699079_699436_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000377104
AP018562.1\|BBD85479.1\|692184_692901_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	3.99757e-136
AP018562.1\|BBD85477.1\|689338_691489_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.7542e-20
AP018562.1\|BBD85490.1\|700741_701308_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.76466e-61
AP018562.1\|BBD85486.1\|698545_698989_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.68521e-09
AP018562.1\|BBD85489.1\|699956_700499_+\|N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.66844e-29
AP018562.1\|BBD85481.1\|694089_694746_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	2.86225e-88
AP018562.1\|BBD85491.1\|701308_701767_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	3.85085e-76
AP018562.1\|BBD85482.1\|694832_695723_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.80964e-40
AP018562.1\|BBD85480.1\|692900_693380_+\|cupin	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	3.87309e-69
AP018562.1\|BBD85484.1\|697141_697630_+\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	9.58911e-41
AP018562.1\|BBD85475.1\|686830_687628_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.04427e-40
AP018562.1\|BBD85473.1\|684561_685179_+\|DUF47-domain-containing-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.27806e-54
AP018562.1\|BBD85476.1\|688071_688638_+\|membrane-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	5.83668e-23
AP018562.1\|BBD85478.1\|691592_691994_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	5.38901e-23

>AP018562.1|BBD85482.1|694832_695723_+|LysR-family-transcriptional-regulator
MNNLWGEIMKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNSQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANSHLFNDDHYFIYPKDKRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKQMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTYMSYDPSMLQLPQVDSFVNLMSNFVEKPKG
>AP018562.1|BBD85481.1|694089_694746_+|DUF402-domain-containing-protein
MTVKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMYALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNNHKPQNKPNNEKSKALNPKQYKHNNNKHQHQKNIK
>AP018562.1|BBD85480.1|692900_693380_+|cupin
MKAAQQWIDELNLISHPEGGFYKETIREVTTNDQRAPFSSIYFLLTDDNISHFHRIDAEEVWYYHAGSSLTIHMIDKEGQYKAVTLGSDIENGDVLQYVVPKGTIFASSIESENTYSLVGCMCHPAFEFEHFELFTQSELLNQFPHLKSVIEKYALKQI
>AP018562.1|BBD85479.1|692184_692901_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDDILETLMEQDVDVKDVIDDNGLTIVYAEPDQFAVVQDALREAGVEEFKVAEFEMLPQTDIELSEDDQATFEKLIDALEDLEDVQNVFHNVDIK
>AP018562.1|BBD85478.1|691592_691994_+|MarR-family-transcriptional-regulator
MTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKFCKEEKVLMQSFLKTAMDELELSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLDEEDISKFNALFEDVEQFLNI
>AP018562.1|BBD85477.1|689338_691489_+|AraC-family-transcriptional-regulator
MANSCLHILTNSEYATTRCQDGIVLFWPIEGEIELQKFRKSKIIEDDIYIINHLDVFSVKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLEKQPLNDADIRKIQEIITIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFLSKSNLSSQFHLQMGMGFKKYIDTLKIGKSIEILLTTDSTVSNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKFDKCIMLKPEVLKEEKVNEIKEVVIDYIDHYKNHLTDVIHIDEDKFQTPKSFQTIIQINTYTEMKLVFLEGIFKTLLKTDSQVVFFIMPSILNSQNTISEVEKVEIIKTIIEGNLKVAFNVNEIETIYYVEEAFMKVCRQLSSSELEHSNKYEVHFIFDLSVMEIRTIYRMILKLHNIMLNVKLGLNITCLLEKPSEYKSLVSQIKRLKFDSLIIDNASLSSPYLMGESDELLLKNILHFKNLKQVINELDLEHEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQSFNAMHLFDKNGFKTTLGLILEKFIEFVSKPKYENSYYSIIDIENYYCLVVYDWRVIESETVISDFEDSQVYINFKNNVLNDKYLIIIETLDEISGNINHLISKDLRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSNDSLNINVTFNALYIIKIGKK
>AP018562.1|BBD85476.1|688071_688638_+|membrane-protein
MYYWIIFGVGCYLGQFLPLSWRQPLSFGLLIIILATLIFNRARRFGLIISNLYAVGIGLLSYATFATYLQNLGPDIFYKNIALAVFAFIAFGIIGYFVVGDASSIGKYLFVTLIALIIASIIGIFLRNPIFYTVITVVSLLLFLLYTLYDFNRLKRGEYSPQEMGFNLFINLLNIIKDILYLANTFRR
>AP018562.1|BBD85475.1|686830_687628_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAVTATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQQYNTSVESIKQSNHLDNNLVFPGQVISVGGSGAQSTSNTSSQYGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLSGYLIMPNQTLQIPNGGSGGTTPTVATSTNGNTSSFNHQNLYTEGQCTWYVFDRRAQAGKPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERINGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>AP018562.1|BBD85474.1|685194_686202_+|inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLVFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIVWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFSVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQTDGSVEPQLWVKVACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISAILAALLFYILNLFF
>AP018562.1|BBD85473.1|684561_685179_+|DUF47-domain-containing-protein
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS
>AP018562.1|BBD85483.1|695930_697127_+|MFS-transporter
MFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKFIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLILQIFFYKDLKIKHPISTQQHVEKAAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSKLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSSASILVGMILIFFTKDQKFTK
>AP018562.1|BBD85484.1|697141_697630_+|DUF456-domain-containing-protein
MTLVLWLLIIAAFIFAFIGLIKPIIPSVLVLWIGFLIYQFGFHNQHLSWIFYVSMALLTVLILCADFLANKYFVSRFGGSKFGEYAALIGVIIGCFVLPPFGIIIVPFVLVFIVELLQGYSFEKAIKVSLGSIVAFLTSSVAQAIIMFIMIVWFFVDALWVN
>AP018562.1|BBD85485.1|697728_698418_-|hypothetical-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFDHDPKAHAKKELKAMPNETFKNIFKYIFQHIVLLIGIVSFLKGFLGFFMEKNGSNLYFFSFPFSIIVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSVLAFGPYIQVSNWVFIILSFIIMPIGFRIERNISKKHSHTFL
>AP018562.1|BBD85486.1|698545_698989_+|N-acetyltransferase
MRALNKNERDYIHQIANIHETLLTETESGYQHTSLSVALRFEMICSRLEYSNDKIYIVENETQLCAFIWGHFNSEKQIVSIELLYVKPQFRNRGLATILKCGIETWAKSIKAKQIFSTVHKDNVTMISLNKRLGYQLSHVKMYKDIE
>AP018562.1|BBD85487.1|699079_699436_+|hypothetical-protein
MAMMILLAGCGKSQEKASLEKDIDKLQKENKNLKDKKEKLKQEKDKLEDKQKDLEKEVKDLKPSKEDTKENNKDDKKDDKKDKSTSQNKDTKDKSKADDNKKTTTKDKEQKSNDKNQS
>AP018562.1|BBD85488.1|699575_699875_+|hypothetical-protein
MHEQDFKILEGQNITLPELGRELENITGRTIVDSTGEIKRVIAQLPNFESETDTFVATYRLNHQQDFIDATFTALKSDRSRLKEVPVHVELISYISKSE
>AP018562.1|BBD85489.1|699956_700499_+|N-acetyltransferase
MIYCETDRLILRDWHEDDLLHFQKMNANHDVRKYFPSLLSYRRSELDMRKMDTIIKDYGIGLFAVEEKASRQWIGFIGLNYIPETSEYPFKELPLYEIGWRLLPQYWGQGMATEGAKAVLELAKKHNIQDVYSFTAEANKASQRVMEKIGMSYYDQFELPHLSKYHLLKRQVRYYIDLSK
>AP018562.1|BBD85490.1|700741_701308_-|TIGR00730-family-Rossman-fold-protein
MKRIAVYCGASKGHNPSYVKKAYELGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKVIGVMPKMLDEREITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFDPLQSMIYHMIEEGFIDPKYRALAPLCDSKESLVEAILNFKPLGTRTYD
>AP018562.1|BBD85491.1|701308_701767_-|YaiI/YqxD-family-protein
MTNIIIDGDACPVVNSIIDLTTETGIFVTIIRSFSHYSNQVYPPHVSTVYVDDGPDAVDYKIVQLSKDEDIVITQDYGLASLLIEKVDTVMHHNGKIYTPKNIQQLLDKRYLNAQIRKQGGRHKGPPPFTKQDKKTFEMSLSKIIHQARERN
>AP018562.1|BBD85492.1|701769_702453_-|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLFVERKRIKQHPDVQKVTNATSKVASKTSTVISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKEREKNQLQRIKDMKKSQKYEEKVGLTPAKLDEKTEKKGDKLAEKNRKEIDKMNKKLQKNIEKRHKEEQKQQQEAEKARIKSFKKYKDYVTKSPKTQNKSNDTEA

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Crispr_ID: AP018562_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_4

915197-915302

Orphan

Consensus_repeat	Method
AGTAAAAAGAAACAAAAGCATCA	PILER-CR

2 spacers

The CRISPR arrays of AP018562_4

>merge|AP018562|4|915197-915302|PILER-CR
AAAAGAAACAAAAGCATGGTGCTGCAGATCATTTATAATAGTAAAAAGAAACAAAAGCATCAAGGTGAAATTCGTTGGTATGAGTAAAAAGAAACAAAAGCATCAG

>AP018562|4|2|915197-915302|PILER-CR
AAAAGAAACAAAAGCATGGTGCTG	CAGATCATTTATAATAGTAAAA
AGAAACAAAAGCATCAAGGTGAAA	TTCGTTGGTATGAGTAAAAA
GAAACAAAAGCATCAG

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD85730.1\|919653_920046_+\|DUF1027-domain-containing-protein	unknown	unknown	gnl\|CDD\|226876
AP018562.1\|BBD85724.1\|914068_915109_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
AP018562.1\|BBD85715.1\|908197_908473_+\|phage-holin	unknown	unknown	gnl\|CDD\|130653
AP018562.1\|BBD85719.1\|910336_910537_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85722.1\|912345_912660_-\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85728.1\|917212_918532_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|223808
AP018562.1\|BBD85732.1\|920488_920923_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225293
AP018562.1\|BBD85716.1\|908600_909872_+\|amidase	unknown	unknown	gnl\|CDD\|376559
AP018562.1\|BBD85733.1\|920922_921702_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
AP018562.1\|BBD85721.1\|912203_912314_+\|chorismate-mutase	unknown	unknown	unknown
AP018562.1\|BBD85731.1\|920124_920391_-\|DUF3055-domain-containing-protein	unknown	unknown	gnl\|CDD\|378617
AP018562.1\|BBD85729.1\|918615_919533_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
AP018562.1\|BBD85727.1\|916358_917186_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
AP018562.1\|BBD85734.1\|921735_922695_+\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
AP018562.1\|BBD85718.1\|910239_910350_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85726.1\|915497_916346_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
AP018562.1\|BBD85723.1\|912987_914028_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226911
AP018562.1\|BBD85717.1\|910040_910169_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85720.1\|911172_911730_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232
AP018562.1\|BBD85735.1\|923272_923425_+\|teichoic-acid-D-Ala-incorporation-associated-protein	unknown	unknown	gnl\|CDD\|372124

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD85730.1\|919653_920046_+\|DUF1027-domain-containing-protein	gnl\|CDD\|226876	COG4470, COG4470, Uncharacterized protein conserved in bacteria [Function unknown].	6.4625e-53
AP018562.1\|BBD85724.1\|914068_915109_+\|nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	4.36687e-105
AP018562.1\|BBD85715.1\|908197_908473_+\|phage-holin	gnl\|CDD\|130653	TIGR01592, Uncharacterized_9.5_kDa_protein_in_ORF3_5'region, holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others. [Mobile and extrachromosomal element functions, Prophage functions].	1.49577e-31
AP018562.1\|BBD85735.1\|923272_923425_+\|teichoic-acid-D-Ala-incorporation-associated-protein	gnl\|CDD\|372124	pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein. This family of proteins is found in bacteria. Proteins in this family are approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important.	1.57454e-07
AP018562.1\|BBD85731.1\|920124_920391_-\|DUF3055-domain-containing-protein	gnl\|CDD\|378617	pfam11256, DUF3055, Protein of unknown function (DUF3055). This family of proteins with unknown function appear to be restricted to Firmicutes.	4.6972e-38
AP018562.1\|BBD85732.1\|920488_920923_+\|DUF86-domain-containing-protein	gnl\|CDD\|225293	COG2445, COG2445, Uncharacterized conserved protein [Function unknown].	4.28268e-37
AP018562.1\|BBD85716.1\|908600_909872_+\|amidase	gnl\|CDD\|376559	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.	9.82231e-24
AP018562.1\|BBD85728.1\|917212_918532_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	1.51991e-89
AP018562.1\|BBD85729.1\|918615_919533_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
AP018562.1\|BBD85727.1\|916358_917186_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.88011e-32
AP018562.1\|BBD85734.1\|921735_922695_+\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.92884e-163
AP018562.1\|BBD85733.1\|920922_921702_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.12171e-130
AP018562.1\|BBD85726.1\|915497_916346_+\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	5.13349e-88
AP018562.1\|BBD85723.1\|912987_914028_+\|HlyC/CorC-family-transporter	gnl\|CDD\|226911	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism].	3.75958e-155
AP018562.1\|BBD85720.1\|911172_911730_+\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	5.52846e-10

>AP018562.1|BBD85724.1|914068_915109_+|nitronate-monooxygenase
MLNIKYPIIQAGMAGSTTPQLVASVSNSGGLGTIGAGYFNTKQLDEEIDRVRELTKNVFGVNIFVPSHQSYTSSQIDNMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIEKQVPVCCFTFGIPSEKIINRLKEANIKLVGTATCVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKTQNQVPMIGTISLVPQIVDAVTIPVIAAGGIMDGRGILASIILGAEGVQMGTAFLTSQDSKASKLLRDAIINSKETDTVVTKAFSGKFARGINNRFIEEMSQFEGDIPDYPIQNELTSSIRKAAANLGDKELTHMWSGQSPRLATTHPANTIMSNLINQINQIMQHK
>AP018562.1|BBD85723.1|912987_914028_+|HlyC/CorC-family-transporter
MIIAIIILIFISFFFSGSETALTAANKTKFKTEADKGDKKAKGIVRLLEKPSEFITTILIGNNVANILLPTLVTIMALRWGISVGIASAVLTVIIILISEVIPKSVAATFPDKITRLVYPVINICVFVFRPITLLLNKLTDSINRSLSKGQPQEHQFSKEEFKTMLAIAGHEGALNEIETNRLKGVINFENLKVKDVDTTPRVNVTAFASNATYEEVYETVMNKPYTRYPVYEGDIDNIIGVFHSKYLLAWSNNKENQITNYSAKPLFVNEHNKAEWVLRKMTISRKHLAIVLDEFGGTEAIVSHEDLIEELLGMEIEDEMDKKEKEKLSRQQIQYQQRKKRNISI
>AP018562.1|BBD85722.1|912345_912660_-|hypothetical-protein
MYFVLAIFTIISASVSLGYSIRACASSHNINAYYALSRSLPLFLLAVFSLVIHSAIFLITISIAMILVQFLDAIVGYKSKDVFKTYGPLATSVVNLILLIVFLF
>AP018562.1|BBD85721.1|912203_912314_+|chorismate-mutase
MVDKATTQIQHDCGIRVMVFIKLIENYIKYSLKIIR
>AP018562.1|BBD85720.1|911172_911730_+|hypothetical-protein
MGNITYLKINSENDVDLQDILNDFINCFCKGYVEIKTKYKLLPIFKINFHKNNLPHLLGLHYTHKKVSAKKIIGRIAEGKITHESIKKHYEYSNIKDRLINYNFLHKCFIDKEIRLCVIVPKNSINPQKIDVAFIDDKNSQVMILGLRKSNNNDFYSPATMYVLGKNSSYRRMRRTHVISIEWKN
>AP018562.1|BBD85719.1|910336_910537_+|hypothetical-protein
MDVDNMSDYKLKIIELIKSDITGYQIHKQTGVAQYVISQLRQGKREVDNLTLNTTEKLYSYARQVL
>AP018562.1|BBD85718.1|910239_910350_+|hypothetical-protein
MTEQMYLLLFLLSLPLLLFIGRKTHFYCLDKKNGRR
>AP018562.1|BBD85717.1|910040_910169_+|hypothetical-protein
MLDIIKTLLEHQVLAVLIIPEVLKQLREWHLGYLDRKPNNKD
>AP018562.1|BBD85716.1|908600_909872_+|amidase
MKGVGAADIPTWNDFTNEATVYENTVSFQALPGDVVIFNRNYGGGYGHVGIVISATLDSITILEQNWLGGAYWSPPEVTTRRTHGYDFPMWFIRPFYAKETTANKLRSAVTPVKQDKLSKGKKIMLVAGHGIGAYSNDPGAVANGENERDFNRKNIIPRVKKYLESVGNTVLLYGGNSMNQDLYQDTLYGQRVGNYKDYGMYWIKNEVKPDAIIEFHLDSASPQASGGHVIISDRFPADDIDKALSSALDKTVGKIRGVTPRGDLLNANVSADLNLNYRLIELGFITSTKDLNYIKNNLDSFTKRIAEAINGRQIDAPSSKPSADKITWNWKGVFYPNPEKAIRVRKTAGLTGTVVEEDSWLYTKDDWVKFDQVIKKDGYWWIRFKYQREGSSTNDFYCAVCRITDKEQKIKNEKYWGTIEWA
>AP018562.1|BBD85715.1|908197_908473_+|phage-holin
MDIGTIVRTILLIVAWINQFLAIKHISPIPVDEVFISTVVTGIVSIWTWWKNNNFTHASKKGQQKIYEVKAGIQSTGGAPKVNGDDNNAVG
>AP018562.1|BBD85726.1|915497_916346_+|DUF72-domain-containing-protein
MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYAIQPERNILKWIKETPDTFEFVVKIHQALTLHADYKAFADTRQELFEQFKKMLEPLQTHHKLAMVLVQFPPWFDCNAQNIKYILYVRQQLQSFPMCVEFRHQSWFSDAFKEQTLAFLTEHEIIHAVVDEPQVKEGSIPLVNRITNEIAFVRYHGRNRYGWTKKDMSDQEWRDVRYLYDYNEQELTDLAQKAQILEQKAKKVYVIFNNNSGGHAANNAKTYQQLLNIDYEGLAPQQLKLF
>AP018562.1|BBD85727.1|916358_917186_+|sulfite-exporter-TauE/SafE-family-protein
MLLTITLLVLIGGLSAIIGSIVGIGGGIIIVPTMVYLGVEHGLLHGITTQVAIGTSSVILIVTGLSSSLGYLKTKQVDIKNGSIFLFGLLPGSLLGSFISRYLTFESFNLYFGIFLIFVAILLMIRNKIKPFKIFDKPKYQKTYVDAKGKTYHYSVPPLFAFITTFLIGILTGLFGIGGGALMTPLMLIVFRFPPHVAVGTSMMMIFFSSVMSSIGHIAQGHVAWGYAIILIISSYFGAKIGVKVNQSIKSDTVVTLLRTVMLLLGIYLIIRALI
>AP018562.1|BBD85728.1|917212_918532_+|bifunctional-metallophosphatase/5'-nucleotidase
MQLTIYHTNDIHSHLHEYERIKAYMAEHRPQLNHPSLYVDLGDHVDLSAPITEATVGKKNVSLLNEAHCDVATIGNNEGMTISHEALNHLYDDANFKVTCSNVIDESGHLPNNIVSSYIKEIADTKILFVAATAPFTPFYRALDWIVTDPLEAIKEEVERQRGKYDVLIILSHCGIFFDETLCQELPEIDVIFGSHTHHYFEHGELNNGVLMAAAGKYGNYIGEVNLVIEENKVVSKSATIIPLEDLPQVETSFDEDGKALMSTPVIEHPVILKRGINHITEAAYILAQSVCEYTHAQCAIINAGLLVTDIEKELVTEYDIHQMLPHPINMVRVRLSGLKLKEIIEKSNKQEYMYEHAQGLGFRGNIFGGYILYNLGYINSTGKYYMNGQEIEDDQLYVLGTIDMYTFGRYFPSLKELPKEYLMPEFLRDIFKEKLLEY
>AP018562.1|BBD85729.1|918615_919533_+|lipoyl-synthase
MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEAKCPNIHECWGARRTATFMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGSNVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTPRVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEIYETMDDLRANDVDILTIGQYLQPSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGEAQLNS
>AP018562.1|BBD85730.1|919653_920046_+|DUF1027-domain-containing-protein
MKNLIKVDQHYFELIENYRECFNEEQFIARYSDILDKYDYIVGDYGYDQLRLKGFYKDSNKKAEMSKRFSNIQDYIFEYCNFGCPYFVLRHLSKQEVKKLIEEYDQPDVIDEENKLQDVKIKPTIQDAEH
>AP018562.1|BBD85731.1|920124_920391_-|DUF3055-domain-containing-protein
MIDMYLYDDNEESQVQFVGFVGEHSRYDLMLVHTNRHYGKTLVLNMQTNKFGIIGTDDLNEEGYIAHVLGVSHDEGEEITEYLNEVIH
>AP018562.1|BBD85732.1|920488_920923_+|DUF86-domain-containing-protein
MYFVDKDKLTQKLTYLQTLTDDYQESKNNQYAFERIAQMLIESSVDIGNMIIDAFILRDPGNYKDVIDILELENVITKETQQAINKTVDIRKQFTYDYTTLDIETIVPMFDEALPYYKQFILEVTTFLQQENVPVTAFGKGENQ
>AP018562.1|BBD85733.1|920922_921702_+|TIGR01457-family-HAD-type-hydrolase
MKQYKAYLIDLDGTMYMGTDEIDGAKQFIDYLNDKDIPHLYVTNNSTKTPEQVTEKLREMNIDAKPEEVVTSALATAEYISEQSPGASVYMLGGSGLNTALTEAGLEIKDDEHVDYVVIGLDEKVTYEKLAIATLGVRNGATFISTNPDVSIPKERGLLPGNGAITSVVSVSTGIQPQFIGKPEPIIMIKALEILGLDKSEVAMVGDLYDTDIMSGINVGMDTIHVQTGVSSLEDVQNKNVPPTYSFKDLNETIAELEK
>AP018562.1|BBD85734.1|921735_922695_+|D-glycerate-dehydrogenase
MVKIVVSRKVPDKFYQQLCELGNVEMWHESLVPMPRQQFETALHDADACFITLSEHISAQTLAKAPKLKVIANMAVGYDNIDVESATAHNVIVTNTPDVLTETTAELGFTLMLATARRIVEAEKYIEADAWQSWGPYLLSGKDVYNSTVGIFGMGDIGKAFAKRLKGFNTKILYHNRSRNKNAEIQYDATYVSFEKLLAESDFIICTAPLTKETKYKFNADAFKQMKNDAIFINIGRGLIVDETALIEALDNKEILSCGLDVLATEPIDHLHPLMGRDNVIITPHIGSASVMTRDNMIQLCVDNIKAVLNHLSPRTPIN
>AP018562.1|BBD85735.1|923272_923425_+|teichoic-acid-D-Ala-incorporation-associated-protein
MKSKSKQPPNKYVEAFKPYLLTILYLAIFITLYLIYGSGDTHNNFIYNEF

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Crispr_ID: AP018562_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_5

1047937-1048019

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCGCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018562_5

>merge|AP018562|5|1047937-1048019|CRISPRCasFinder
TGCAAGTTGGCGGGGCGCCAACACAGAGAAATTGGAACCCTAAATTCTACAGGCAATGCAAGTTGGCGGGGCCCCAACACAGA

>AP018562|5|4|1047937-1048019|CRISPRCasFinder
TGCAAGTTGGCGGGGCGCCAACACAGA	GAAATTGGAACCCTAAATTCTACAGGCAA
TGCAAGTTGGCGGGGCCCCAACACAGA

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD85853.1\|1053472_1054483_-\|acyltransferase	unknown	unknown	gnl\|CDD\|226122
AP018562.1\|BBD85858.1\|1060611_1061817_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224235
AP018562.1\|BBD85842.1\|1040971_1041184_-\|NINE-protein	unknown	unknown	gnl\|CDD\|225196
AP018562.1\|BBD85857.1\|1060086_1060575_-\|DUF2538-domain-containing-protein	unknown	unknown	gnl\|CDD\|287742
AP018562.1\|BBD85845.1\|1043062_1044433_+\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
AP018562.1\|BBD85846.1\|1044419_1046093_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|224087
AP018562.1\|BBD85850.1\|1048698_1049829_-\|cysteine-protease	unknown	unknown	gnl\|CDD\|368490
AP018562.1\|BBD85854.1\|1054635_1055055_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
AP018562.1\|BBD85848.1\|1046875_1047697_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
AP018562.1\|BBD85844.1\|1041951_1042890_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
AP018562.1\|BBD85851.1\|1049968_1051030_-\|serine-protease	unknown	unknown	gnl\|CDD\|226119
AP018562.1\|BBD85841.1\|1040774_1040891_-\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD85852.1\|1051563_1052649_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|236075
AP018562.1\|BBD85856.1\|1059496_1059934_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
AP018562.1\|BBD85839.1\|1038946_1039303_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
AP018562.1\|BBD85855.1\|1055484_1059270_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|226656
AP018562.1\|BBD85847.1\|1046079_1046883_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
AP018562.1\|BBD85840.1\|1039766_1040726_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226959
AP018562.1\|BBD85843.1\|1041342_1041900_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
AP018562.1\|BBD85849.1\|1048331_1048661_-\|cysteine-protease	unknown	unknown	gnl\|CDD\|370248

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD85853.1\|1053472_1054483_-\|acyltransferase	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	7.08355e-71
AP018562.1\|BBD85858.1\|1060611_1061817_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	3.1693e-79
AP018562.1\|BBD85842.1\|1040971_1041184_-\|NINE-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	9.90175e-09
AP018562.1\|BBD85857.1\|1060086_1060575_-\|DUF2538-domain-containing-protein	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	4.01689e-105
AP018562.1\|BBD85845.1\|1043062_1044433_+\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	3.67725e-150
AP018562.1\|BBD85846.1\|1044419_1046093_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
AP018562.1\|BBD85850.1\|1048698_1049829_-\|cysteine-protease	gnl\|CDD\|368490	pfam05543, Peptidase_C47, Staphopain peptidase C47. Staphopains are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme.	1.51752e-103
AP018562.1\|BBD85854.1\|1054635_1055055_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.56011e-20
AP018562.1\|BBD85848.1\|1046875_1047697_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
AP018562.1\|BBD85844.1\|1041951_1042890_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	2.90766e-124
AP018562.1\|BBD85851.1\|1049968_1051030_-\|serine-protease	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	1.70001e-58
AP018562.1\|BBD85852.1\|1051563_1052649_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|236075	PRK07683, PRK07683, aminotransferase A; Validated.	1.83187e-163
AP018562.1\|BBD85856.1\|1059496_1059934_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	4.7448e-26
AP018562.1\|BBD85839.1\|1038946_1039303_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.25127e-17
AP018562.1\|BBD85855.1\|1055484_1059270_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	2.17687e-84
AP018562.1\|BBD85847.1\|1046079_1046883_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.07946e-113
AP018562.1\|BBD85840.1\|1039766_1040726_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226959	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism].	2.58242e-133
AP018562.1\|BBD85843.1\|1041342_1041900_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.04474e-08
AP018562.1\|BBD85849.1\|1048331_1048661_-\|cysteine-protease	gnl\|CDD\|370248	pfam09023, Staphostatin_B, Staphostatin B. Staphostatin B inhibits the cysteine protease Staphopain B, produced by Staphylococcus aureus, by blocking the active site of the enzyme. The domain adopts an eight-stranded mixed beta-barrel structure, with a deviation from the up-down topology of canonical beta-barrels in the amino-terminal part of the molecule.	5.74216e-50

>AP018562.1|BBD85848.1|1046875_1047697_+|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MTNRQWETLREYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLDQVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP
>AP018562.1|BBD85847.1|1046079_1046883_+|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MLHYKFYEAKVDTSQILILLHGFLSDSRTYRDHIDTFTNACHVVTIDLPGHGEDKSPTDVDWSFDYITASLDQILEQFKDKSISMLGYSMGGRVALYYALHGRIKLSKLILESTSPGIKLEVDQIERRLIDEARAKVLEIAGIEVFVNDWEKLPLFQTQYQLSEDKQLQIREQRLSQSPIKMAKALRDYGTGKMPNLWSQIPELKMPVLILAGEYDEKFVQIAEKMANLISNSKCKLFSAVGHTIHVEDNVEFDTMILGFLKEEQND
>AP018562.1|BBD85846.1|1044419_1046093_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MGNHKEALTKQVYTFASELYAYGVREVVISPGSRSTPLALAFEAHPNIKTWIHPDERSAAFFAVGLIKGSERPVAILCTSGTAAANYTPAIAESQISRIPLIVLTSDRPHELRSVGAPQAINQVNMFNNYVSYEFDMPLADDSKETIDAIYYQMQIASQYLYGPHKGPIHFNLPFRDPLTPDLTTTDLLKSEIKILPHYQKCINATALKNILSKPKGLIIVGDMQHQEVDQILSYSTMYDLPILADPLSHLRKFDHPNVISTYDLLYRSGLELNVDFVIRVGKPVISKKLNQWLKKTEAFQILVQNNDKIDVFPIAPNISYEISANDFFRSLMDDTIVDRKDWLELWRHLERKARVEINQYLEHATDESAFVGELINKTSDAEALFISNSMPIRDIDNLLLNKNIDIYANRGANGIDGIISTALGMAVHKRITLLIGDLSFYHDMNGLLMSKLNHINMNIVLLNNDGGGIFSYLPQKDSASDYFERLFGTPTGLDFEYAAKLYDFGFKRFKHISEFKNEKLSNEYSTIYEMITNREVNYEQHQILYKKLSEMIHATL
>AP018562.1|BBD85845.1|1043062_1044433_+|isochorismate-synthase
MKWMATGVTEDDIVKEIYDSSKEWVSVEVKLSQSLDPSTLFHLTDNEAGDRFYMRLNDNQTSYFGYKAIQLFKNNFKNKQSIFREWEKLKHEIAFIHPQSGRHHLRIVGGFQFSSHKSDDEWREFGLNHFVLPEVLITTEDEGTFLTYTVQRENFDMDSFKALVEFFNNAIEIDVEDQNGEIIRNEDIYKDDWRQLVEEAIESINKEEKIVLARRRLIKFDKDISIPYILKQAFSKEKNSYIFLLESQDSIFFSQTPEQLLKVNNRILSTKAVAGTIKRSHNEEEDKKHVEAFLKDNKNLVEHRFVVESILHDIEPYITELDYDKTPKILKNDHLYHLYTEIKAPLKDDSYIGLIDNLHPTPALGGYPKAFAIDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKTQATLFAGCGIVKDSDPDSELAETNLKFSPMMNALGVDMNGKS
>AP018562.1|BBD85844.1|1041951_1042890_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MSNQYQQYSTVKKYWHLMRPHTLTASVVPVLVGTAASKIYFLGSEDHIKITLFVAMLLACLLIQAATNMFNEYYDYKKGLDDHESVGIGGAIVRNGMSPQLVLRLAIAFYIVAALLGIFLAVNTSFWLLPVGLVCMAVGYLYTGGPFPISWTPFGELFSGVFMGMFIIVIAFFIQTGNIQSYAIWLSIPIVITIGLINMANNIRDRVKDKASGRKTLPILLGKKASLAFMAIMYFIAYAFIVLTIIVKPGGSLFYLLALLSFPMPVKVIRRFKKNDTPATMMPAMAAAGKTNTFFGVLYALGIYISAIFAGI
>AP018562.1|BBD85843.1|1041342_1041900_+|N-acetyltransferase
MKMIRQARPGDRFEIAKLVYMVWEDMELDMVKAVLKDKILTAIEKSCVDVRYRTYYEHIYVYEVDDKIAGCIISYNGKYELEYEKTWEQLNLPEEFQQYGTPLPVKEAKDDECYIETIATFENYRGRGIATKLLINLLESNTNVKWSLNCDVNNEAALKLYQKVGFTSDGYIELYKHKYHHLIVK
>AP018562.1|BBD85842.1|1040971_1041184_-|NINE-protein
MKVNKAIYVIVALFLGGLGIHKFYADKFGQGLLHLLFFWTGIPTIISIIHAIIIIFTKKADKDGYIVFPK
>AP018562.1|BBD85841.1|1040774_1040891_-|hypothetical-protein
MRQFIKKIAKAILIGYVIKFIRQKLSGKSSHSSDNQHK
>AP018562.1|BBD85840.1|1039766_1040726_+|ABC-transporter-substrate-binding-protein
MSKKVIRLIVTLIVIVIIAAGCGKDTDKNEKEMLTIKDALGTEKITKNPKRIVVLEYSFADYLASLNVKPVGIADDGNAKNITKTVRDKIGKYESVGSRPQPNLEIISKLKPDLIIADVSRHKKIKSELNKIAPTIMLVSGTGDYNENIDSFKTVAKAIGKEKEGEKRLEKHEEILAAVRKKIEHSSLKSAFAFGISNTGMFINNEDTFMGQFLIKMGIKPEVTKDKTAHIGERKGGPYIFLNNEELANLNPKVMILATNGKTDKNRSKFIEPSVWNSLQAVKDHKVYDVDRNKWMQSRGIIASESMADDLEKIVDKIK
>AP018562.1|BBD85839.1|1038946_1039303_-|DoxX-family-protein
MKLGMLLIRWMLATSFLVHGTLKFVDLDGTIHFLGSLGLPPAIAVLMSIGEVVGGLALIIGFLTPYVNVFYICVMLGSIFTLKLTRGYVSGYEFEIIHIVMNLACISSYSWKKWLQFY
>AP018562.1|BBD85849.1|1048331_1048661_-|cysteine-protease
MYQLQFINFIYDKSNLTHLEQNNINLFIGNWSNHQLQKTICIRHGDNTSQNQYRILFIDTAHQRIKFSPLHHDQFIYILDYDDSQHILMQTSSEDGIGTSRPILYERLI
>AP018562.1|BBD85850.1|1048698_1049829_-|cysteine-protease
MLILSLGAFANNNNAKADSQSKQLEIKVKSDKVPQKVDDLAHQQFSGYAKALDKQNNTQSSKYELGEAFKIYKFNGEEDNSYYYPVIKDGKIVYILTLSPKNKDDLNKSKDDRNYSVKISNFIAKELNEIKDKDTNITVLTDEKGFYFEEDGKVRLVKATPLVNNIKEKESSKTVSPQLKQDLKATVTPSKIEESETIQNEEDQVQYENTLKNFKIREQQFDNTWCAGFSMAALLNATKNTDTYNAHDIMRTLYPNVSEEELVNCSTFPNQMIEFGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKIIYWNPWDTEVSIQDADSSLLHLSFNRDYNWYGSMIGY
>AP018562.1|BBD85851.1|1049968_1051030_-|serine-protease
MKGKFLKVSSLLVATLTTVTLVNSPSANALSSNSLDSHAKQTQSDKQQSPKIQKGNNLKPIEQREHANVILPNNDRHQIEDTTNGHYGPVTFIQVESATGTFIASGVVVGKDTLLTNKHVVDATHGNPQALTAFPSAKSQDNYPNGGFRAEQITKYTGEGDLAIVKFSPNDKNQHIGEVVKPATMSNNAETQVNQPITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNDKNEVIGIHWGGVPNEFNGAVFINENVRNFLKENIQDIHFTDGDNNNPDQPNNPDNPNNPDQPNNPDNPNNPDQPNNPDQPNNPDQPNNPDQPNNPDNGDNNNSDNPDAA
>AP018562.1|BBD85852.1|1051563_1052649_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MKDLDDCINLTIGQPDFPMPDVVKQAYINAIENNKTTYSHNKGLLETREAISQYFKNRYQFYYDPEEVIVTNGASEALDTALRSIIEPGDEILIPGPIYAGYIPLIEVLGGIPIYIDTTTTQFKITPDAIERHITPRTKAILLNYPTNPTGVVLRRNEVEDLVNLLKHYPIFIISDEIYAENTFSGKHVSFAEFEDIRDQLLLIGGLSKSHSATGIRIGFLLGPEYLIEKLTFMHAYNCICANVPAQIACIAALKEGIESPKYMNEAYIERRNYLVSELTKLGFNITAQPEGAFYIFPSIKHITDDDFKFCVDLLESVHLAIVPGSAFTDAGKGFVRISYAYEMDVLREGINRLSQFLNTK
>AP018562.1|BBD85853.1|1053472_1054483_-|acyltransferase
MTSLKERDYFFDNARAILILLVVFGHMLQPYTSGDKFLSALYLVIYSFHMPTFLFISGYFAKNIDKPYYLEKIAKRLLVPYMIFFAFFSIYYFLTGKSDELQLDPFNPVFALWFLITLFFFHVILVIVRRFSPYKVLTVSIIISIAAGFSENIDSYLSISRTIVFFPIFYIGFIFTRKQTNIFKSKKLIPVSIITFIIFYVIYVIHPINADWLLGSSPYTSLEHEGQSIFSPFKRLILYAIILIAMTAFLNLIPEKKQFYTYIGSRTLYIYLLHGLIIGIVRGFEWYPFDKPISMMTYIFLISISVVIVYVLSTNFICKWTNPIINLQKPSQFKSS
>AP018562.1|BBD85854.1|1054635_1055055_+|MarR-family-transcriptional-regulator
MYKQLEKLITLTNNDLNLVNRRFGQRTDITSEQLELLRILYNFDRLSQYDLTMKISREQSIVSRWIKKLVLKGYITSQQSSEDLRCKELILTNQARDLISQINKARCELIEARCQCLSEGELDNLNQLLDKLNQRRISL
>AP018562.1|BBD85855.1|1055484_1059270_-|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MAKKFNYKLPSMVALTLVGSAVTAHQVQAAETTQDQTANKNVLDSNKVKATTEQAKAEVKNPTQNISGTQVYQDPAIVQPKAASKTTNTQVNTKVDTTQVNGDTSATKSTTTNKVQPVAKSTSTTTPKANTNVTSAGYSLVDDEDDTTTNTNAEINPELIKSAAKPAALNTQYKAAAPKATTTSAPKTAATATPKVMTFSATAQPRTAAAAPKTSLPKYKPQVNSSINDYIRKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDNSTINGEISYMKNNYQNAFVHAFVDGNRIVETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKPDSAEYDGKGTVWTHYAVSKYLGGTDHADPHGYLRSHNYSYDQLYDLINEKYLIKMGKVAPWGTQSTTTPTTPTKPSTPSTPTTGKLTVAANNGVAQIKPTNSGLYTTVYDKTGKATSEVQKTFAVSKTATLGNQKFYLVQDYNSGNKFGWVKEGDVVYNTAKTPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGTGNQTFKASKQQQIDKSIYLYGSVNGKSGWVSKAYLVDIAKPTPAPTPKPTTPTTNNKLTVSALNGVAQINSKNNGLFTTVYDKTGKPTKEVQKTFAVTKEASLGGNKFYLVKDYNSPTLIGWVKQGDVVYNNAKSPESVMQTYTVKPGTKLYSVPWGTYKQEAGSVTGSGNQTFKATKQQQIDKSIYLYGTVNGKSGWVSKAYLAVPAAPKKAVAQPKTAVKAYSVVKPQATQTTQTVSKIAQVKANNTGIRASVYEKTAKSGAKYADRTFYVTKQRAHGNETYVLLNNSSHNIPLGWFNVKDLNMQNLGTEVKTSQKYTVNKSNSGLSMVPWGTKNQVILPGNNIAQGTFNAAKQVSVGNDVYLYGTINNRTGWVNVKDLTAPTAVKPTNSKATDYNYTYVIKNANGYYYVTPNADNAKYSLKAFNEQPFAVVKQQVINGQTWYYGKLANGKLAWIKSTDLAKELIKYNQTGMTLNQVAQLQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISVDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNNKVVTNAATKFHNVFGIAAYDNDPLREGIKYAKQSGWDTVSKAIIGGAKFIGNSYVKAGQNTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQYK
>AP018562.1|BBD85856.1|1059496_1059934_-|GNAT-family-N-acetyltransferase
MFKKVINQQMLEDCFSIRKKVFVEEQGVPEENEIDDYESISVHLIGYDQHNQPIATARIRPINETLVKIERVAVVKSYRGTGIGRKLMQAVDSLAKDEGYENATMHAQCHAIPFYESLNFKKRGNIFLEEGIEHVEMMKKLTSHN
>AP018562.1|BBD85857.1|1060086_1060575_-|DUF2538-domain-containing-protein
MKGASYMSRKTYEKIANINGMFNVLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKDSIENPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFRPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAM
>AP018562.1|BBD85858.1|1060611_1061817_-|LytR-family-transcriptional-regulator
MNKFLKYFLILLALVLIVVPIVYATLLFKTSQDAFESSQDSKNANRQSNLRDKKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVKIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLREDLELSPINDKNDFLDQRVINHYGSLIPLTPLDSSLLRKEQNDTTDKEKDKSSDDNSDANSQQQSGTDQNTNQNQNNAQQTPQSSNNQTGVTN

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Crispr_ID: AP018562_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_6

1242261-1242349

Unclear

Consensus_repeat	Method
CAGTAATCAATAAAATTGATAACTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of AP018562_6

>merge|AP018562|6|1242261-1242349|CRISPRCasFinder
CAGTAATCAATAAAATTGATAACTGATCAGAGGAATACCTGAGCTAAAGCTCAAGGAAAAGATGCAGTAATCAATAAAATTGATAACTG

>AP018562|6|5|1242261-1242349|CRISPRCasFinder
CAGTAATCAATAAAATTGATAACTG	ATCAGAGGAATACCTGAGCTAAAGCTCAAGGAAAAGATG
CAGTAATCAATAAAATTGATAACTG

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD86034.1\|1250967_1251471_+\|ribosome-maturation-factor	unknown	unknown	gnl\|CDD\|234650
AP018562.1\|BBD86019.1\|1233452_1233641_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
AP018562.1\|BBD86020.1\|1234084_1234459_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
AP018562.1\|BBD86023.1\|1238758_1239331_+\|transcription-factor	unknown	unknown	gnl\|CDD\|179847
AP018562.1\|BBD86029.1\|1243649_1247219_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
AP018562.1\|BBD86030.1\|1247215_1248466_+\|signal-recognition-particle-docking-protein	unknown	unknown	gnl\|CDD\|236686
AP018562.1\|BBD86032.1\|1248809_1250177_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
AP018562.1\|BBD86031.1\|1248452_1248785_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
AP018562.1\|BBD86018.1\|1232558_1233203_+\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
AP018562.1\|BBD86035.1\|1251470_1252208_+\|tRNA-(guanosine(37)-N1)-methyltransferase	unknown	unknown	gnl\|CDD\|234581
AP018562.1\|BBD86025.1\|1240314_1241241_+\|[acyl-carrier-protein]-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
AP018562.1\|BBD86022.1\|1236293_1238354_+\|DNA-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
AP018562.1\|BBD86028.1\|1242786_1243518_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
AP018562.1\|BBD86021.1\|1234473_1236120_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
AP018562.1\|BBD86017.1\|1231907_1232552_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
AP018562.1\|BBD86033.1\|1250505_1250781_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
AP018562.1\|BBD86024.1\|1239335_1240322_+\|phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|235414
AP018562.1\|BBD86027.1\|1242437_1242671_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
AP018562.1\|BBD86026.1\|1241227_1241968_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
AP018562.1\|BBD86036.1\|1252310_1252661_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD86034.1\|1250967_1251471_+\|ribosome-maturation-factor	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	4.70945e-70
AP018562.1\|BBD86019.1\|1233452_1233641_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
AP018562.1\|BBD86020.1\|1234084_1234459_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.26105e-36
AP018562.1\|BBD86023.1\|1238758_1239331_+\|transcription-factor	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	1.76105e-97
AP018562.1\|BBD86029.1\|1243649_1247219_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
AP018562.1\|BBD86030.1\|1247215_1248466_+\|signal-recognition-particle-docking-protein	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
AP018562.1\|BBD86032.1\|1248809_1250177_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
AP018562.1\|BBD86031.1\|1248452_1248785_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	1.25059e-46
AP018562.1\|BBD86018.1\|1232558_1233203_+\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.09695e-71
AP018562.1\|BBD86035.1\|1251470_1252208_+\|tRNA-(guanosine(37)-N1)-methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.1991e-163
AP018562.1\|BBD86025.1\|1240314_1241241_+\|[acyl-carrier-protein]-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	4.19656e-131
AP018562.1\|BBD86022.1\|1236293_1238354_+\|DNA-helicase	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
AP018562.1\|BBD86028.1\|1242786_1243518_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	2.78686e-115
AP018562.1\|BBD86021.1\|1234473_1236120_+\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	0
AP018562.1\|BBD86017.1\|1231907_1232552_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	3.48418e-112
AP018562.1\|BBD86033.1\|1250505_1250781_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
AP018562.1\|BBD86024.1\|1239335_1240322_+\|phosphate-acyltransferase	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	5.25347e-176
AP018562.1\|BBD86027.1\|1242437_1242671_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
AP018562.1\|BBD86026.1\|1241227_1241968_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	2.46872e-139
AP018562.1\|BBD86036.1\|1252310_1252661_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70

>AP018562.1|BBD86026.1|1241227_1241968_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMFM
>AP018562.1|BBD86025.1|1240314_1241241_+|[acyl-carrier-protein]-S-malonyltransferase
MGKTAIIFPGQGAQKVGMAQDLYNNNELATEILTSAANTLDFDILETMFTDEDGKLGETENTQPALLTHSSALLVALRNLNPDYTMGHSLGEYSSLVAANVLSFEDAVKIVRKRGQLMAKAFPTGVGSMAAVLGLDYKEVDNICKSLSTEDMIIEPANINCPGQIVVSGHKELIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFLNYINQFEWNDAKFPVVQNVNAQGETDKEVIKLNMVKQLYSPVQFIKSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>AP018562.1|BBD86024.1|1239335_1240322_+|phosphate-acyltransferase
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDKAKYTLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGNIYAQKIRGINNPKISLLNIGTEPAKGNSLTKKSYSLLDQEDTLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKIAGAILKKDLDAFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVRTMKETVGESNG
>AP018562.1|BBD86023.1|1238758_1239331_+|transcription-factor
MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFNVSIQTIRLDRTFLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNDKAQSILDITSDSVFHKSGIARGHVLFAQANSLCVALIKQPTVLTHESTIQFIEKVKLNDTVRAEAQVVNQTTKHYYVEVKSYVKHKLVFKGNFKMFYDKRG
>AP018562.1|BBD86022.1|1236293_1238354_+|DNA-helicase
MAKVNLIESPYSLRELKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQATVTIVGQVYTAPIVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSESVQSTENSDIQLEPVYRIKEGIKQKQLRDQIRQALSDVTIHEWLTDELREKYKLETLDFTLNTLHHPKNKSELLRARRTYAFTELFLFELRMQWLNRLEKSSDDAIEIDYDLNEVKAFIERLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLISLFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFQNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTAELKKGRQAYVICPLIESSEHLEDVQNVVALFESLQQYYGVSRVGLLHGKLSADEKDDVMQKFSNHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIHSGVFFENTYQHLRHFIEENLLHRSFD
>AP018562.1|BBD86021.1|1234473_1236120_+|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADFVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAHAAVEKAQNTEDCIELMAYIIDKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVEKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDDEIVKVHVHTEHPGDVFNYGQQYGELIKLKVENMREQHREVIRKEQHTTKPEMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSQCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDASLEDNKVQMTEAVNAVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQFATISELLNVMLAEDSEILTVIIGQDADKAVTDEMLNWVEEQYPDVEVEVHEGGQPIYQYFFSVE
>AP018562.1|BBD86020.1|1234084_1234459_+|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIFVQGVRVNNTGKKI
>AP018562.1|BBD86019.1|1233452_1233641_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>AP018562.1|BBD86018.1|1232558_1233203_+|thiamine-diphosphokinase
MHINLLCSERHLPQDIWVKHIGEKWGGVDRGALILLKHQITPFFSVGDFDSVSNKERQLLTEQLEIKPVQAEKADTDLALAVDKAVALGFDSITIFGATGGRLDHFFGAVQLLLKKAYYKKDVHIKLVDQQNKIVLLPKGQYQVEKDASYPYISFIPMTDDVELSLSGFKYNLTRQMLNIGSTLTISNEVGNAQAMINVHEGLLLQIRSADLKE
>AP018562.1|BBD86017.1|1231907_1232552_+|ribulose-phosphate-3-epimerase
MTKLFPSLLSVDFLNLQHELNKLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTSLPIDVHLMIENPENYIASFVEHGADMISIHVESTSHIHRAIQMIKHLNKKAGVVINPGTPVAIIEPILDIVDYVLVMTVNPGFGGQSFITQCVEKIAHLNAIKMERQLNFEIEVDGGVNNDTAKVCIDNGATMLVTGSFFFNQNDYKKVTQQLKG
>AP018562.1|BBD86027.1|1242437_1242671_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>AP018562.1|BBD86028.1|1242786_1243518_+|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYHNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGAMYLDQGLDVVWRFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGQAIAEGKGKTKKESEQRAAESAYKQLKQIK
>AP018562.1|BBD86029.1|1243649_1247219_+|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSNKLSVDENEVVVTRRLYRSGESEYYLNNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAVAKEYKTLSQQMKHSDIVVTVHDINQYTNDNQQLDQRLNDLKGQQAAKESDKQSLSQKIQQYKGERQQIDNDVESMNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLNELLENIINEQTEAKSALETLKTKQKELNGIIRQLEEQLYISDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKEIQGQIETTKKDYQKVSKELAIVDKEIKDIEKALTDTKKSQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKHKDLKGIHGAVAEIIDVPSKLTQAIETALGASLQHIIVDSEKDGRNAIQFLKERNLGRATFLPLNVIQSRVIATEIKSIASNTDGFISIASEAVKVAPEYQNIIGSLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRSQLEDYLRQTESFEQQFKDLKTKSDQLSEQYFEKSQKHNVLKEQVHHLEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKEAQLESIKVSLKRLEDEIERYTKLSKEGKESVTKTQQSLHQKQSDLAVVKERIKAQQQTIERLNNQHQQTKHQLKEVKEKIEFFNSDEVMGEQAFQNIKNQINGQQETRTRLSDELDKLKQQRIDLNAQIDTQEAMLQECHQDILSIENHYQDIKAEQSKLDVLIHHAMDHLNDEYQLTVERAKAEYVSEESIDTLRKKVKLMKMSIEELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIINEMDQEVTERFKETFHAIQGHFTTVFKQLFGGGQAELQLTESDYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQS
>AP018562.1|BBD86030.1|1247215_1248466_+|signal-recognition-particle-docking-protein
MSFFKRLKDKFATNKENEEVKSLNEEQSQDKVDDTRSNDSTQDVNEVEETVEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKNIDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPEIYVYGLFADMIEQNEDITTVEDNKDEADEKDVQHGPK
>AP018562.1|BBD86031.1|1248452_1248785_+|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYRKFEQRRDIYEQMKQHLNDPEQIKRYIQQLEDLE
>AP018562.1|BBD86032.1|1248809_1250177_+|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTETDIKTMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALQHAKDEHLDFVIIDTAGRLHIDEALMNELKEVKEIAKPNEIMLVVDSMTGQDAVNVAESFDNQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>AP018562.1|BBD86033.1|1250505_1250781_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>AP018562.1|BBD86034.1|1250967_1251471_+|ribosome-maturation-factor
MRVEVGQIVNTHGIKGEIKVKSNSDFTDIRFQPGQVLTVVYNNKDIEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIELEENEFYYSDIIGCTVFDNEGTPIGRVINIFETGANDVWVIKGAKEYLIPYIADVVKEVDVENKKIIITPMEGLLE
>AP018562.1|BBD86035.1|1251470_1252208_+|tRNA-(guanosine(37)-N1)-methyltransferase
MKIDYLTLFPEMFDGVLNHSIMKRAQENGKLQVNTVNFRDYAVNKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSNAEHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTKVDKQILERYKLGLKKD
>AP018562.1|BBD86036.1|1252310_1252661_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

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Crispr_ID: AP018562_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_7

1379400-1379484

Orphan

Consensus_repeat	Method
TTCTCTGTGTTGGGGCCCACCCAAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018562_7

>merge|AP018562|7|1379400-1379484|CRISPRCasFinder
TTCTCTGTGTTGGGGCCCACCCAAACTTGTATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACCCCAACTTG

>AP018562|7|6|1379400-1379484|CRISPRCasFinder
TTCTCTGTGTTGGGGCCCACCCAAACTTG	TATTGCTTGTAGAATTTCTTTTCGAAA
TTCTCTGTGTTGGGGCCCACCCCAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD86156.1\|1387231_1388083_+\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
AP018562.1\|BBD86153.1\|1380545_1382561_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235542
AP018562.1\|BBD86161.1\|1393295_1394279_+\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224235
AP018562.1\|BBD86155.1\|1385360_1386674_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
AP018562.1\|BBD86142.1\|1365086_1367075_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
AP018562.1\|BBD86143.1\|1367370_1367613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367606
AP018562.1\|BBD86154.1\|1382560_1384963_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
AP018562.1\|BBD86159.1\|1389908_1392431_+\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase	unknown	unknown	gnl\|CDD\|225451
AP018562.1\|BBD86158.1\|1389467_1389599_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD86144.1\|1367857_1368259_+\|DUF1453-domain-containing-protein	unknown	unknown	gnl\|CDD\|227183
AP018562.1\|BBD86148.1\|1373166_1374813_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
AP018562.1\|BBD86146.1\|1369508_1372538_+\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
AP018562.1\|BBD86151.1\|1378972_1379269_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227178
AP018562.1\|BBD86149.1\|1375392_1378098_+\|aconitate-hydratase	unknown	unknown	gnl\|CDD\|236445
AP018562.1\|BBD86160.1\|1392640_1393168_-\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|237597
AP018562.1\|BBD86145.1\|1368383_1369505_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
AP018562.1\|BBD86152.1\|1379755_1380364_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|234691
AP018562.1\|BBD86157.1\|1388277_1389426_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
AP018562.1\|BBD86147.1\|1372601_1372964_-\|large-conductance-mechanosensitive-channel-protein	unknown	unknown	gnl\|CDD\|172460
AP018562.1\|BBD86150.1\|1378270_1378738_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD86156.1\|1387231_1388083_+\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	6.57486e-45
AP018562.1\|BBD86153.1\|1380545_1382561_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
AP018562.1\|BBD86161.1\|1393295_1394279_+\|LytR-family-transcriptional-regulator	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	4.7634e-75
AP018562.1\|BBD86155.1\|1385360_1386674_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
AP018562.1\|BBD86142.1\|1365086_1367075_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
AP018562.1\|BBD86143.1\|1367370_1367613_+\|hypothetical-protein	gnl\|CDD\|367606	pfam03672, UPF0154, Uncharacterized protein family (UPF0154). This family contains a set of short bacterial proteins of unknown function.	1.28868e-21
AP018562.1\|BBD86154.1\|1382560_1384963_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
AP018562.1\|BBD86159.1\|1389908_1392431_+\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	1.05486e-179
AP018562.1\|BBD86144.1\|1367857_1368259_+\|DUF1453-domain-containing-protein	gnl\|CDD\|227183	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones].	1.20349e-68
AP018562.1\|BBD86148.1\|1373166_1374813_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
AP018562.1\|BBD86146.1\|1369508_1372538_+\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	3.08782e-90
AP018562.1\|BBD86151.1\|1378972_1379269_-\|hypothetical-protein	gnl\|CDD\|227178	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown].	2.05091e-37
AP018562.1\|BBD86149.1\|1375392_1378098_+\|aconitate-hydratase	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
AP018562.1\|BBD86160.1\|1392640_1393168_-\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.31179e-89
AP018562.1\|BBD86145.1\|1368383_1369505_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	6.99579e-70
AP018562.1\|BBD86152.1\|1379755_1380364_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	9.46886e-64
AP018562.1\|BBD86157.1\|1388277_1389426_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.54099e-61
AP018562.1\|BBD86147.1\|1372601_1372964_-\|large-conductance-mechanosensitive-channel-protein	gnl\|CDD\|172460	PRK13954, mscL, large conductance mechanosensitive channel protein MscL.	2.13165e-62
AP018562.1\|BBD86150.1\|1378270_1378738_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.81399e-42

>AP018562.1|BBD86151.1|1378972_1379269_-|hypothetical-protein
MQIELTDAAVSWFKNELELPENNKVLVFFVRYGGEFQLKQGFSPAFTVEPKENVDVGYEQHYDGLNIVVAEKDLWYFEDDHIIVNVVDHEDEISYTAK
>AP018562.1|BBD86150.1|1378270_1378738_+|acyl-CoA-thioesterase
MIYSITEIEARYAETDKMGVIYHGNYATWFEVARLDYITKLGFSYADMEKQGIISPVTELNVNFKKSIFYPEKVKIKTWVEHYSRLRSVYKYEIFNEQGELATTGSTELICIKEDTFKPIRLDRYFPDWHEAYHKVSELNEAGTTFEVVDGIESL
>AP018562.1|BBD86149.1|1375392_1378098_+|aconitate-hydratase
MAANFKEQSKKHFDLNGQSYTYYDLKAVEDRGITKVSNLPYSIRVLLESLLRQEDDFVITDEHIKALSQFGEDGNEGEVPFKPSRVILQDFTGVPAVVDLASLRKAMDDVGGDISKINPEVPVDLVIDHSVQVDSYANPEALERNMKLEFERNYERYQFLNWATKAFDNYNAVPPATGIVHQVNLEYLASVVHVRDVDGEKTAFPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQPSYFPIPEVIGVRLVNSLPQGATATDLALRVTQELRKKGVVGKFVEFFGPGVQHLPLADRATIANMAPEYGATCGFFPVDDESLKYMKLTGRSDEHIALVKEYLQQNHMFFDVEKEDPNYTDVIELDLATVEASLSGPKRPQDLIFLSDMKTAFEDSVTAPAGNQGHGLDKSEFDKKAEIEFKDGSKASMKTGDIAIAAITSCTNTSNPYVMLGAGLVAKKAVEKGLKVPEYVKTSLAPGSKVVTGYLRDSGLQTYLDDLGFNLVGYGCTTCIGNSGPLLPEIEKAIADEDLLVTSVLSGNRNFEGRIHPLVKANYLASPQLVVAYALAGTVDIDLQNEPIGKGKDGEDVYLQDIWPTIKEVSDTVDSVVTPELFIEEYKNVYNNNELWNEIDVTDQPLYDFDPNSTYIQNPSFFQGLSKEPGKIVPLSGLRVMGKFGDSVTTDHISPAGAIGKDTPAGKYLLEHDVPIREFNSYGSRRGNHEVMVRGTFANIRIKNQLAPGTEGGFTTYWPTNEVMPIFDAAMKYKEDGTGLVVLAGNDYGMGSSRDWAAKGTNLLGVKTVIAQSYERIHRSNLVMMGVLPLEFRKGESADALGLDGTEEISVNIDENVQPHDFVKVTAKKQNGELVEFDAMVRFDSLVEMDYYRHGGILQMVLRNKLAQ
>AP018562.1|BBD86148.1|1373166_1374813_+|BCCT-family-transporter
MNSSSPENPNGKKYSPVFIYSAIVVAIVVLLGAFLPEQFNYVTNNIKIWITEKLGWYYLILTTIIVFFCIFLIFSPIGKLKLGKPNDKPEFNTISWFAMLFSAGMGIGLVFYGAAEPMAHFAAPPTADPKTTEAYTEALRSTFFHWGFHAWAVYGVVALALAYAQFRKGEPGLLSRTLRPILGDKVEGPIGILIDVLSVFATIVGVAVSLGMGALQINGGLHYLFNVPNNTFVQAIIIIVVTILFIASAWSGLSKGIQYLSNLNIGLGTILMIAALIVGPTVLILNMLTSSTGSLLNTFLFNSFDTAALNPQKREWMSSWTLYYWGWWLSWSPFVGVFIARVSKGRSIREFISGVLLVPAIVSFIWFSVFGVLGIETGKKHKEIFDMTPETQLFGVFNHVPFGIVLSLIALLLIASFFITSADSATFVLGMQTTFGSLNPSSMVKVVWGISQALIAFVLLLAGGGNGAEALNAIQSAAIISAFPFSFVVILMMISFYKDANQERKFLGLTLTPNKHRLQEYIKSQQEDYESDILEKRQSRRNLEKKDN
>AP018562.1|BBD86147.1|1372601_1372964_-|large-conductance-mechanosensitive-channel-protein
MLKEFKEFALKGNVLDLAIAVVMGAAFNKIVTSLVENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSIIDFIIIAFALFIFVKIANTLMKKEEAEEEAVVEENVVLLTEIRDLLREKK
>AP018562.1|BBD86146.1|1369508_1372538_+|SMC-family-ATPase
MKPLHLTLKNFGPFLKEEIDFSKIDNNELFLISGKTGSGKTMIFDAMTYALFGQASTKQREENDLRSHFADGKEPMSVTFQFELNHRVYKLHRQGPYIKEGNTTKTNAKFDVFELVDDKFEIRESKVQAGNQFIIDLVGVNAEQFRQLFILPQGEFKKFLISKSSDKQGILRTLFDSNKFEEVREILKEEVKKEKAQIENRYQQIDLLWHEIETFNNEEIKSLMNISSQQTDKLLENIPLLETNFNQQLKNVYEEKEVATRTFENIEKKNQENKLLQENIRQLDSYKNSFVQLKENQPEIDRIEEKLKLLQEITSLLNFIDAKKHIEAKMIKVNDAIKETKNKISEVDINRQSIDKEYEVLKEKEHTIDKKIAFIDKTKPIKNNITKYRESFNKVDGLTIENKQLKKELSNLNKSLEEIEIAISKNDSNYEHIVVLNHEMNQINDDINTIKENENAKSELIRLMDSKQELEKSINNEKTVLSDLEVKLEHFDKSKLDLNDKASFIREIKSAVKIGDQCPICGNEIHNLGEHIDFESIAKRKADIKEIETKISSIKSSIAVKLSEMNHINEKISNINVNEHLDISVEVLNERLTEKEVELNKQIATNKHVEKLKSDKEKLTAKLHQSQLLFNRNESELKLSQQLIIEFETLSEYRDISGFEADYNKSVQEVNTHQELSKQIENKLTQLTQQRLIEENNLNHYKQQSTTYNNELKENEQAIENEMTKLNLSQDSDVEEIMTWRDDKIRLKKVVDEYKKQYNELELEINRLESLVKGKVVINPVELEKDYQQSKENLNALIDKYSAVHYQCESNVKKLKSIESHINYLNQELKDQQQIFQLSEIVSGKNNKNLTLENFVLIYYLDKIIAQANLRLATMTDNRYQLIRREAVSQGLSGLEIDVFDLHSNKARHISSLSGGETFQSSLALALGMSEIVQQQSGGISLESIFIDEGFGTLDQETLETALDTLLNLKSTGRMVGIISHVTELKNRIPLVLEVKSNQYQSSTIFRRN
>AP018562.1|BBD86145.1|1368383_1369505_+|exonuclease-SbcCD-subunit-D
MKIIHTADWHLGKILNGKQLLEDQAYILDKFVEQMIIEKPDVIVIAGDLYDTTYPSKDAIMLLERTIGKLNLELNIPIIIISGNHDGKERLNYGASWFEHSQLYIRTDFTTIKSPITINEVNFYTLPYATVSEMKHYFEDESIENHQQGISRCIDEIQHLLDPKAINILIGHLTVQGGKTSDSERPLTIGTVESVQKNVFNVFDHIMLGHLHHPFSINDKKIKYSGSLLQYSFSEVGQSKGYRRIIIDGDDISDKFIPIEPLRQLEIITGEYSEVINEKIAVNNKENYFHFKLTNMSHITDPMMHLKQVYPNTLALTNETFNYNEEKNVIDISRKDDMTIIEQFYNYITDTGLSEVQSKKIKNILEDKLSKED
>AP018562.1|BBD86144.1|1367857_1368259_+|DUF1453-domain-containing-protein
MKAQNYPVNEKKIILPPFFMSTGTLMYVVPYFRLTGSEMLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDPGELGGMFFLLAFCMIVPWRLAMLYKYKKLKKTLIN
>AP018562.1|BBD86143.1|1367370_1367613_+|hypothetical-protein
MATWLAIILIIGALILGLIGGFLLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNMDQNMKSAKK
>AP018562.1|BBD86142.1|1365086_1367075_+|transketolase
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVSGSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKDGYNVVDHYTYVLASDGDLMEGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKERFEAYGWNYLLVKDGNDLEEIDQAITKAKSQEGPTIIEVKTTIGFGSPNKAGTNGVHGAPLGEDERKLTFENYGLDPEKRFNVSEEVYEIFQSTMLQRANEDESKWNALLEKYAEAYPELAEEFKLAVSGKLPNNYKDELPRFELGHSGASRADSGAIIQAISKTVPSFFGGSADLAGSNKSNVNNAIDYSSETPEGKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPENVVEEGVRKGAYTVYGTEETPEFLLLASGSEVSLAIEAAKDLEKQGKSVRVVSMPNWNAFEQQSDEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENILNQVMSL
>AP018562.1|BBD86152.1|1379755_1380364_-|glycerol-3-phosphate-acyltransferase
MMIIVMLLLSYLIGAFPSGFVIGKVFFKKDIRQFGSGNTGATNSFRVLGRPAGFLVTFLDIFKGFITVFFPLWLPVHADGPISTFFTNGLIVGLFAILGHVYPIYLKFQGGKAVATSAGVVLGVNPILLLILAIIFFVVLKIFKYVSLASIVAAICCVIGSLIIQDYILLVVSFLVSIILIIRHRSNIARIFRGEEPKIKWM
>AP018562.1|BBD86153.1|1380545_1382561_+|DNA-topoisomerase-IV-subunit-B
MQEAKSLAMNKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINQDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWVEVEIHRDGNIYHQSFKNGGTPTSGLVKKGKTKKTGTKVTFKPDGTIFKASTSFNFDVLSERLQESAFLLKNLKISLKDLRSGKEREEYYHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKAKRIEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDNSEVQVLENDQFDEEEI
>AP018562.1|BBD86154.1|1382560_1384963_+|DNA-topoisomerase-IV-subunit-A
MSEVIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSQLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIENPDISVSQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVDEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDQVIELIRSSKNKRDAKENLIDVYDFTEEQAEAIVMLQLYRLTNTDIVALQEEHKELEALIQQLRHILDNHDALLNVIKEELTEIKKKFKSDRLSQIEAEIAEIKIDKEVMVPSEEVILSMTRHGYIKRTSVRSFNASGVAEIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEMVINVFNEKDFNTNAFYVFATQNGMIKKSTVPQFKTTRYNKPLVATKLKDSDELISVMRFDKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKDEDYVIMTEGISEKDSILMATQRGSLKRIGFKVLQVAKRAQRGLTLLKELKKNPHRIVAAHVVTNEHNQYTLYSKSNEEHGLINDIHKSEQYTNGSFIVDTDDFGIVTDMYID
>AP018562.1|BBD86155.1|1385360_1386674_+|alanine:cation-symporter-family-protein
MLPEMFRALVERPETLEDGKKGISPFQAFAISAGSRVGTGNIAGVATAIVLGGPGAVFWMWVIAFIGAASAFIEATLAQVYKVHDKDGGFRGGPAYYITKGLNQKWLGIVFAILITITFAFVFNTVQSNTIAESLNTQYNISPVVTGIILAIVTAIIIFGGVRSIATLSSLIVPIMAIIYIGMVLVILLFNLDQIVPMIGTIVKSAFGIEQVTGGAVGAAVLQGIKRGLFSNEAGMGSAPNAAATAAVPHPVKQGLIQSLGVFFDTMLVCTATAIMILLYSGLKFGASAPQGVAVTQSALNEHLGSAGGIFLTIAVTLFAFSSVVGNYYYGQSNIEFLSTNRMVLFIFRCLVVVLVFIGAVVKTETVWNTADLFMGLMAIVNIISIIGLSNVAFALMKDYQKQKKEGKNPVFKPENLEINLFGISAWGANNNKKLDK
>AP018562.1|BBD86156.1|1387231_1388083_+|transcription-antiterminator
MGEYIVTKTLNNNVVVCTNDGQEVILIGKGIGFNKKEGMVLNNQAITIDKIYKLESEQQKEHYKSLVEIADDNVLQVIIESLNFISNTAMNVDSKQLVVSLTDHIIFAYKRIKQNQVISNPFVMETKQLYSEAYHIAKQVIDQLNAALDVHFPEDEIGFIALHIASNTEDLSMREMTLINDLIKRSIDIIESDLVTTVDKQSLQYQRFIRHVQFLIRRLRKKEYIHAQDDFVSMIKNHYPICYNTAFKILTMIQKQFDVHISESEIIYLTLHIHHFEAKINQS
>AP018562.1|BBD86157.1|1388277_1389426_+|AI-2E-family-transporter
MKFIGGNDLVFSLIALVLLGIVIFIFEKVSYVFDPFIIVFKTIAAPIIVSLILFYLFNPIVNLMERYRIPRVAGISIIYLAVVGIITLIVNLLIPIIGSQVDSLVKNSPHYLEKLINSIDKIANNTFFSSYYSQINDWLNSLPKKIPSMLSEFTDGFGSKIATFAETIANIGVVIVTTPFVLFFMLKDGHHFKEFSTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIAAVTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHPLTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRFYGNDVGEYDIKESNKIVE
>AP018562.1|BBD86158.1|1389467_1389599_+|hypothetical-protein
MSIVILLCGNVFGVKFNHVNIVKYLCEVLVKYGISIDLKILMV
>AP018562.1|BBD86159.1|1389908_1392431_+|bifunctional-lysylphosphatidylglycerol-flippase/synthetase
MNQEVKNKIFSILKITFATALFIFVVITLYRELSGINFKDTLVEFGKINRMSLVLLFIGGGASLVILSMYDVILSRALKMDISLGKVLRVSYIINALNAIVGFGGFIGAGVRAMVYKNYTHDKKKLVHFISLILISMLTGLSLLSLLIVFHVFDASLILDKITWVRWVLYAVSFFLPLFIIYSMVKPPDKNNRFVGLYCTIVSCVEWLAAAVVLYFCGVIVDAHVSFMSFIAVFIIAALSGLVSFIPGGFGAFDLVVLLGFKTLGVPEEKVLLMLLLYRFAYYFVPVIIALILSSFEFGTSAKKYIEGSKYFIPAKDVTSFIMSYQKDIIAKIPSLSLAILVFFTSMIFFVNNLTIVYDALYDGNHLTYYLLLAVHTSACLLLLLNVVGIYQQSRRAIIYAMISILLITVATFFTYASYILIAWLAIIFILLIVAFRRARKLKRPIRIRNLVAMFLFSVFVLYVNHIFIAGTLYALDIYTIEMHTSVLRYYFWITILIIALIVGAIAWLFDYQFSKVRISSNIEDCEAIINQYGGNYLSHLIYSGDKQFFTNEDKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLGYDVVFYQVTDQHMPLYHNFGNQFFKLGEEAIIDLTQFSTSGKKRRGFRATLNKFDELNISFEIIEPPFNTEFLNELQHVSDLWLDNRQEMHFSVGQFNEAYLSKAPIGVMRNENNEVIAFCSLMPTYFNDAISVDLIRWLPDLDLPLMDGLYLHMLLWSKEQGYTKFNMGMATLSNVGQLHYSYLRERLAGRVFEHFNGLYRFQGLRRYKSKYNPNWEPRFLVYRKDSSLWESLSKVMRVIRHK
>AP018562.1|BBD86160.1|1392640_1393168_-|peptide-methionine-(S)-S-oxide-reductase
MSKMNINTAYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHVKKPTYEQVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDPLDSDGQYQDRGPQYQTAIFYTNEHQKKQAEVYIEQLKNTINADKAIATKIVPASEFYKAEEYHQDFYKKNPERYAEEQKIRQEYKNKQQRL
>AP018562.1|BBD86161.1|1393295_1394279_+|LytR-family-transcriptional-regulator
MDKENNDNEYRRQSENVTSTPKRKKKKKIRKLPIILLIVVIILIALVAYIVHSYNSGVEYAKQHAKDVKVHQFNGPVKNDGKISILVLGADKAQGGQSRTDSIMVVQYDFINKKMKMMSVMRDIYADIPGYGKHKINSAYALGGPELLRKTLNKNLGINPEYYAVVDFTGFEKMIDELMPDGVPINVEKDMSKNIGVSLKKGNHRLNGKELLGYARFRHDPEGDFGRVRRQQQVMQTLKKEMVNFRTVIKLPKVAGILRGYVNTNIPDSGIFQTGLSFGIRGDKDVKSLTVPIKNSYQDINTNTDGSALQINKNTNRQAIKDFLDEE

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Crispr_ID: AP018562_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_8

2017123-2017207

Orphan

Consensus_repeat	Method
AGCTGACATTCCGTCAACTTCTGTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018562_8

>merge|AP018562|8|2017123-2017207|CRISPRCasFinder
AGCTGACATTCCGTCAACTTCTGTGTTGGGGCCCCAGCCCCAACTTGCACATTATTGTTAGCTGACATTCCGTCAGCTTCTGTGT

>AP018562|8|7|2017123-2017207|CRISPRCasFinder
AGCTGACATTCCGTCAACTTCTGTGT	TGGGGCCCCAGCCCCAACTTGCACATTATTGTT
AGCTGACATTCCGTCAGCTTCTGTGT

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD86721.1\|2026605_2028222_-\|chaperonin	unknown	unknown	gnl\|CDD\|234573
AP018562.1\|BBD86710.1\|2014297_2015392_-\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
AP018562.1\|BBD86718.1\|2024788_2024896_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD86720.1\|2025634_2025751_-\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|226251
AP018562.1\|BBD86713.1\|2018382_2019435_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|369625
AP018562.1\|BBD86708.1\|2012405_2013692_+\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|181512
AP018562.1\|BBD86719.1\|2025160_2025523_-\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|226251
AP018562.1\|BBD86704.1\|2009502_2009931_-\|phenol-soluble-modulin-export-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|379133
AP018562.1\|BBD86705.1\|2010159_2011056_-\|phenol-soluble-modulin-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
AP018562.1\|BBD86706.1\|2011052_2011433_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
AP018562.1\|BBD86712.1\|2017344_2018361_-\|beta-channel-forming-cytolysin	unknown	unknown	gnl\|CDD\|369625
AP018562.1\|BBD86702.1\|2007869_2008610_-\|phenol-soluble-modulin-export-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|378925
AP018562.1\|BBD86715.1\|2021688_2022996_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
AP018562.1\|BBD86716.1\|2023857_2024310_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
AP018562.1\|BBD86711.1\|2015777_2016770_+\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
AP018562.1\|BBD86703.1\|2008609_2009482_-\|phenol-soluble-modulin-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
AP018562.1\|BBD86717.1\|2024406_2024808_-\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD86714.1\|2019851_2021084_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
AP018562.1\|BBD86709.1\|2013976_2014177_-\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
AP018562.1\|BBD86707.1\|2011689_2011866_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD86721.1\|2026605_2028222_-\|chaperonin	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
AP018562.1\|BBD86710.1\|2014297_2015392_-\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	4.6774e-29
AP018562.1\|BBD86720.1\|2025634_2025751_-\|terminase-small-subunit	gnl\|CDD\|226251	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair].	7.43099e-16
AP018562.1\|BBD86713.1\|2018382_2019435_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.69388e-76
AP018562.1\|BBD86719.1\|2025160_2025523_-\|terminase-small-subunit	gnl\|CDD\|226251	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair].	2.95742e-24
AP018562.1\|BBD86704.1\|2009502_2009931_-\|phenol-soluble-modulin-export-ABC-transporter-permease-subunit	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.000581933
AP018562.1\|BBD86705.1\|2010159_2011056_-\|phenol-soluble-modulin-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.15622e-78
AP018562.1\|BBD86706.1\|2011052_2011433_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	7.90902e-46
AP018562.1\|BBD86712.1\|2017344_2018361_-\|beta-channel-forming-cytolysin	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.25064e-97
AP018562.1\|BBD86708.1\|2012405_2013692_+\|aspartate-aminotransferase	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	0
AP018562.1\|BBD86715.1\|2021688_2022996_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	7.84496e-81
AP018562.1\|BBD86716.1\|2023857_2024310_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.44171e-13
AP018562.1\|BBD86711.1\|2015777_2016770_+\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	2.52618e-136
AP018562.1\|BBD86703.1\|2008609_2009482_-\|phenol-soluble-modulin-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.40929e-70
AP018562.1\|BBD86714.1\|2019851_2021084_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
AP018562.1\|BBD86709.1\|2013976_2014177_-\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	3.1017e-12
AP018562.1\|BBD86702.1\|2007869_2008610_-\|phenol-soluble-modulin-export-ABC-transporter-permease-subunit	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.00264602

>AP018562.1|BBD86711.1|2015777_2016770_+|sphingomyelin-phosphodiesterase
MIKKIKSNSLKKVATIALANLILVGALSESNAKAETKKDDTDLKLVSHNVYMLSTLLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLNNVKKEYPYQTPVLGRSHSGWDKTEGNYSNTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDTRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTWDPKSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLINEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>AP018562.1|BBD86710.1|2014297_2015392_-|MAP-domain-containing-protein
MKFKSIITSTLALGVLATTGATFINNEASASKQQSHSTYHKSHAKSQVQYTITLNGITSNILSYLALPKNTNVSYKDLTYKVKSVLKYDRGVSDIDVSNAKKASYTVFYKNGTKKVVDLKSNNYTANLVNTGDIKKIDINVDLKKHSKEKVKANTQVPYTIAVNGASTPLLANLTFSNKHLISYKDLNAKVKSVLKYDRGINEIDLKFAKKAKYTVHFKNGTKKVVDLKSDIFSGNLFRARDIKKIDINVDVKIASKDKAKVTTQVPYTIAVNGTSAPILSSIAFPNKELISNKDLNAKVKSVLKHDRGIRDLDIQFAKQAKYTVHFKNGTKRVIDLKSNVITGNLFKASDIKNIEINVKQHNH
>AP018562.1|BBD86709.1|2013976_2014177_-|MAP-domain-containing-protein
MNLKLKSTLANDQGVQQSDIDGAERIKYKVYFKDGTSEVIDLKAKVKNWKVFKATDIKKIDMDLKF
>AP018562.1|BBD86708.1|2012405_2013692_+|aspartate-aminotransferase
MNPLAQSLNEQLQQSNATALSMLSNLGQNMFYPKGILSQSAEAKSTKYNATIGMATNKHGKMFAPSLEAMFNDLTPDEIFPYAPPQGVEELRDLWQQKMLRDNPELSIENMSRPIVTNALTHGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGADIQTYPIFNEEGHYTTESLVETLQSYNKDKVIMILNYPNNPTGYTPTHDEVTTIVNAIKALADKGTKVVAVVDDAYYGLFYEDVYTQSLFTALTNLKSNAVLPVRLDGATKEFFAWGFRVGFMTFGTSDQVTKDVLDAKVKGLIRSNISSGPLPTQSAVKHVLKNNEQFDKEIEQNIQTLKARYEVTKEVVYADQYRSHWQAYDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNSTDIRIAFSCVEKEDIPHVFDAIANAIDDLR
>AP018562.1|BBD86707.1|2011689_2011866_-|hypothetical-protein
MKHLTKVFVILAIILFIIGYYLQATNHESQGIKLLLAAIMFMVCAFISRSNDRRKNNK
>AP018562.1|BBD86706.1|2011052_2011433_-|GntR-family-transcriptional-regulator
MKIILKNSSDFPIYEQIKQQVKQNILKGHVAPGEHLPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSAILKEKQFFTIENLVKELVNEAQAIEMPLEELQEILTFIYEEESS
>AP018562.1|BBD86705.1|2010159_2011056_-|phenol-soluble-modulin-export-ABC-transporter-ATP-binding-protein
MNAIEVKNVTYEYDQFQLKNISFNVPRGFVTGFIGRNGAGKTTLIRLIMDLYEPLSGEIRVFEDDMARNPIEIKNKIGFVYAENYFNERWTAKQFEKMVRSFYCKWDHQIFEFYLEKFDLPINKPIKSFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLDIIQKELIDENKTVFMSTHIISDLEKIADYIIHLSDGEIVLNGSKDELLQRFQIVSGDIADLDEELASLLIFEEHKRTGFIGLTEYAQVFKEVLGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGI
>AP018562.1|BBD86704.1|2009502_2009931_-|phenol-soluble-modulin-export-ABC-transporter-permease-subunit
MSLPVSKKQLLDANYITCIVLTLIGTLVISLYAYQAEVIEPNSIYFSTAYAFVISNFLSIPIAFSRFTELRRVRVYYGIYVFTVIILVPFLFSIAIVLVNYFVLKQSAFPDLYSYLLNIGFLFVSIVVLIVNYFKQLKKINV
>AP018562.1|BBD86703.1|2008609_2009482_-|phenol-soluble-modulin-export-ABC-transporter-ATP-binding-protein
MKLEHITKKYGSNIVLNDIDFDFGDSRIVGLIGKNGVGKTTVMKVMNGNIIKFDGKVDIDNADNIGFLIEHPKLYDNKSGLYNLKLFAQVLGNGFDKAYTDKIIDAFGMRPYIKKKVKKYSMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKLEDIELICDRAVFLRDGHFVQDVNMEEGVASDTTIITVDHKDFDRTEKYLAEHFQLQNVDKADGHLMINAQKNYQSILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK
>AP018562.1|BBD86702.1|2007869_2008610_-|phenol-soluble-modulin-export-ABC-transporter-permease-subunit
MRILNLVKYDFYSILKSPLTYLAILVVSGLIATQSILMANALDNPKHIIVYESVFAAAKWLLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYAILIVVQASSNGKNLAFSKYLDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPFIKPFIRLIPRYGDKILDAFDYIPFAYLTDIMISSNFDFSNWQWVISLGSIVIFFILNILYAAKKDI
>AP018562.1|BBD86712.1|2017344_2018361_-|beta-channel-forming-cytolysin
MIKQICKNITICSLALSTTLTVFPATSFAEIKSKITQVSEQNIDGNTKMFTRTATTSDSQKKISQSLQFNFLTEPNYDKETVFIKAKGTIGSGLKILDPNGYWNSTLRWPGSYSVSIQNVDDNTNTKVTDFAPKNQDETREVKYTYGYKTGGDFSISPGGITGNITKERNYSETISYQQPSYRTLIDQPATNKGVGWKVEAHLINNMGHDHTRQLTNDSDNRVGSEIFTLTRNGNLWAKDNFTPKNKMPVTVSEGFNPEFLAVMSHDKKDKGKSKFVVHYKRTMDDFKIDWMRHGFWGYWTGKNHVDQKEEKLSALYEVDWKTHDVKFIKALDDKEKK
>AP018562.1|BBD86713.1|2018382_2019435_-|succinyl-diaminopimelate-desuccinylase
MKNKKRVLLASSLSCALLLLSAATTQANSAHKDSQDQNKKEHVDKAQQKDKQDSTKKGKNVAAPDDVGKNGKVTKRTESEYDEKTNILQNLEFNFIDDPTYDKDVLLVKKQGSIHSNLKFESHKEEKNSTWLKYPSEYHVDFQVKRNPKTEILDQLPKNKISTAKVDSTFSYTLGGKFDSIKGIGRNSSNSYSQTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDEFLFYRNTRTSSVDNPESSFAAKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNSPGLHYAPPILEKNKVGHRFIVTYEVDWKNKTVKVVDKYSDDQPFREG
>AP018562.1|BBD86714.1|2019851_2021084_+|succinyl-diaminopimelate-desuccinylase
MILMTTFSEKEKIQLLADIVELQTENNNEIEVCEYLKDLLAKYNIDSKILNVNDQRANIVAEIGTGSPVLALSGHMDVVDAGNSDNWTYPPFKLTEKEGKLYGRGTTDMKGGLMALVISFIELKEQNRLPQGTLRLLATAGEEKEQEGAKLFAKEGYLDDVDGLIIAEPTGSGIFYAHKGSMSCKVTATGKAVHSSIPFIGDNAIDTLLEFYNQFKEKYTDLKKYDTEHQLDVAPLFKSFIGNAISEEEANYASGLTAVCSIARGGKQFNSVPDEASLEFNVRPVPEYDNDFVEKFFQDIINDVNKNKLNLEIPSNHRPVTSDKNSKLVTTLKEIVSNYVNKEDIFIAAHVGATDASSFLGDNKNNVDLAIFGPGNPIMAHQIDEYIEKDMYLKYIDIYEEAIIKYLKEK
>AP018562.1|BBD86715.1|2021688_2022996_+|TrkH-family-potassium-uptake-protein
MNKVHKPLYFYLILFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMFCLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDFSNDPIVIITISILIILGGIGHFVVIDFINCKKLSRLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSIFQSVTTRTAGFNTIDIANINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVISAFGTVGLTMNLTTEYHGITKMIIILVMLCGKVGLLTLLRTFIPPKSPKKFRYTKGQIYL
>AP018562.1|BBD86716.1|2023857_2024310_-|N-acetyltransferase
MGYMSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKENKIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLNSGNRNERLSAHKLYSDNGYVSSTSGFTKQL
>AP018562.1|BBD86717.1|2024406_2024808_-|hypothetical-protein
MGNKQCISLNLLLSDDTFAVISVMTTLGTAILGGIAPKIYGIFTSPIDKKSSFRAISDWEKEQRNNVKDLMMLLPFTLLSILIVIFIFQFAFSELFNTIAIIIFIIILVVMFFLILLICYKITVKICRYFSKE
>AP018562.1|BBD86718.1|2024788_2024896_+|hypothetical-protein
MHCLLPIEFIDQIAREINNKKFKINDAIIAIVDKI
>AP018562.1|BBD86719.1|2025160_2025523_-|terminase-small-subunit
MAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELLEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGGDEGLDKAVKDVSNDNPNHTVIVDDIPLEDYESISFL
>AP018562.1|BBD86720.1|2025634_2025751_-|terminase-small-subunit
MNELTAKQARFVNEYIRTLNVTQSAIKAGYSENSAHVT
>AP018562.1|BBD86721.1|2026605_2028222_-|chaperonin
MAKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDATIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM

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Crispr_ID: AP018562_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_9

2229686-2229829

Orphan

Consensus_repeat	Method
CTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of AP018562_9

>merge|AP018562|9|2229686-2229829|CRISPRCasFinder
CTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTCTCTCTTTACTCGAAAGCTCACAAAACCCTTGATGTCATTGGTTTCCCATGATTTTT

>AP018562|9|8|2229686-2229829|CRISPRCasFinder
CTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTT	TAATATTTTTCTTTTGAGTTACTCGAAAATTTCT
CTCTTTACTCGAAAGCTCACAAAACCCTTGATGTCATTGGTTTCCCATGATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD86902.1\|2235202_2236012_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
AP018562.1\|BBD86890.1\|2220604_2223019_+\|hyaluronate-lyase	unknown	unknown	gnl\|CDD\|238517
AP018562.1\|BBD86887.1\|2217697_2218447_-\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD86892.1\|2224213_2224843_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153234
AP018562.1\|BBD86891.1\|2223193_2224123_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
AP018562.1\|BBD86896.1\|2229867_2231304_-\|ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|225420
AP018562.1\|BBD86899.1\|2232741_2233545_-\|tRNA-pseudouridine(38-40)-synthase	unknown	unknown	gnl\|CDD\|234577
AP018562.1\|BBD86894.1\|2225851_2226556_-\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
AP018562.1\|BBD86886.1\|2217075_2217684_-\|DUF3885-domain-containing-protein	unknown	unknown	gnl\|CDD\|379022
AP018562.1\|BBD86893.1\|2225037_2225463_+\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
AP018562.1\|BBD86898.1\|2232064_2232502_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
AP018562.1\|BBD86900.1\|2233549_2234215_-\|energy-coupling-factor-transporter-transmembrane-protein	unknown	unknown	gnl\|CDD\|223692
AP018562.1\|BBD86903.1\|2236503_2236872_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
AP018562.1\|BBD86889.1\|2219789_2220206_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
AP018562.1\|BBD86905.1\|2237906_2238296_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
AP018562.1\|BBD86895.1\|2226592_2228257_-\|acetolactate-synthase	unknown	unknown	gnl\|CDD\|236312
AP018562.1\|BBD86901.1\|2234345_2235206_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
AP018562.1\|BBD86897.1\|2231652_2232051_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
AP018562.1\|BBD86904.1\|2236888_2237833_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
AP018562.1\|BBD86888.1\|2218871_2219720_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD86902.1\|2235202_2236012_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	1.01447e-177
AP018562.1\|BBD86890.1\|2220604_2223019_+\|hyaluronate-lyase	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
AP018562.1\|BBD86892.1\|2224213_2224843_+\|glutamine-amidotransferase	gnl\|CDD\|153234	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	1.26243e-47
AP018562.1\|BBD86891.1\|2223193_2224123_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.94397e-60
AP018562.1\|BBD86896.1\|2229867_2231304_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.96362e-64
AP018562.1\|BBD86899.1\|2232741_2233545_-\|tRNA-pseudouridine(38-40)-synthase	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.20474e-118
AP018562.1\|BBD86894.1\|2225851_2226556_-\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	2.85186e-119
AP018562.1\|BBD86886.1\|2217075_2217684_-\|DUF3885-domain-containing-protein	gnl\|CDD\|379022	pfam13021, DUF3885, Domain of unknown function (DUF3885). A putative Rac prophage DNA binding protein. This domain family is found in bacteria, and is approximately 40 amino acids in length. There is a conserved YDDRG sequence motif. There is a single completely conserved residue D that may be functionally important.	5.46914e-10
AP018562.1\|BBD86893.1\|2225037_2225463_+\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	3.25865e-34
AP018562.1\|BBD86888.1\|2218871_2219720_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	4.95055e-151
AP018562.1\|BBD86898.1\|2232064_2232502_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
AP018562.1\|BBD86900.1\|2233549_2234215_-\|energy-coupling-factor-transporter-transmembrane-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	3.51471e-36
AP018562.1\|BBD86903.1\|2236503_2236872_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
AP018562.1\|BBD86889.1\|2219789_2220206_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.09481e-40
AP018562.1\|BBD86895.1\|2226592_2228257_-\|acetolactate-synthase	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
AP018562.1\|BBD86901.1\|2234345_2235206_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
AP018562.1\|BBD86905.1\|2237906_2238296_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
AP018562.1\|BBD86904.1\|2236888_2237833_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
AP018562.1\|BBD86897.1\|2231652_2232051_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82

>AP018562.1|BBD86895.1|2226592_2228257_-|acetolactate-synthase
MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELDTQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>AP018562.1|BBD86894.1|2225851_2226556_-|acetolactate-decarboxylase
MANVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFMADTSYETKDKSSEAVFEEIKEKMLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIHDEDFTNANIDYKDIADEIREAE
>AP018562.1|BBD86893.1|2225037_2225463_+|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDGITALHRTYFVFPENKNVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
>AP018562.1|BBD86892.1|2224213_2224843_+|glutamine-amidotransferase
MKNVYFYIIDGLADWEISNILAELNSKRFFKKDAQTINIEMVSNSKSHITTMGGININPESLIEEISISKDTFLILPGSDTWNDSKHLPVIKIAKEILSNGGYVGAICGATIPLANIGILNEYYHTSNDLLYLESFSSNYHGQKLYIDKPSVSHKNLITASSTGTLMWTKDILQKLDVFKNSTLDAWFNYFSTGNSKHYFELLQTLNKE
>AP018562.1|BBD86891.1|2223193_2224123_-|YafY-family-transcriptional-regulator
MKISRLISIILILNERKRVSAKELSELMEVSKRTIYRDVEAINIAGIPVYSIPGVGGGFEIMENFKLDKNTFTENELVSLLISNSNFPEKLKNMDFYNTNLKIKSLIPKEKLNTINTQVAQFHMDSKHWNNLRNIDDQLIKFKNAIQNNQVLKVKYINHLGNITEREVEPYQLILKAGQWYGYVYCNLREDFRLLKLTRVLKMQASGSKFIKKVYKEPSLSTDRVFEKLKMTIKLRVHESIVERLLDFCDYESFRQENKRYYVVDFPFIDNSYYFGLILSFGDKCEIIEPAEIRYKMKQIIKKLANNYQ
>AP018562.1|BBD86890.1|2220604_2223019_+|hyaluronate-lyase
MSMTYKMKKWQKLSTITLLMAGVITLNNGEFRSVDKHHIAVADTNAQTPDYEKLKKTWLDVNYGYDKYDVNNDAMKKKFEATENEAKKLLSEMKTDNNRTYLWDSAKDLDNKSADMTKTYRNIEKIAEAMKNPKTTLKTDENKLKIKDALDWMHKNVYGKNPSQKVDALTKNRKGQTTPKNNSLNWWDYEIGTPRALTNTLLLMDDMLTKDEMKNYSKPISTYSPFSDKILSSVGESEDAKGGNLVDISKVKLLESIIEEDKDMMKKSIDSFNTVFTYVQNSATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFNDKSQNNTTLKSWIDEGFMPLIYKGEMMDLSRGRAISRENETSHTASATVMKSLLRLSDAMDESTKAKYKQIVKTSVKSDSTYGQNDTLSSYSDISKMKSLMEDSTLSTNDLTQQLKIYNDMDRVTYHNKELDFAFGLSMTSKNVARYESINNENLKGWHTGAGMSYLYNSDVKHYRDNFWATTDMKRLAGTTTLENEEPKGTDVKKSSKTFVGGTKFDDQHASIGMDFENQDKTLTAKKSYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKANGYTLYTDDKQTTNSVFLESTNKPKNNIGYHFLNKPKITVTKESHTGNWKEINKSQKDTQKTDEYYEVTQKHSDKDDKYGYVLYPGITKDNFKSKASQVTIIQQDDDFHVAKDNESVWAGVNYSDSAKTFDINGTKVEVKAKGMFILKKKDDKTYECSFYNPESTNTASDIESKISMTGYSITNKNASTTNESGVRFELTK
>AP018562.1|BBD86889.1|2219789_2220206_-|MerR-family-transcriptional-regulator
MKTKEVVALMNISQDTLRYYEKVGVVPPVNRDENGYRIYTDSDLNWIYLVKNLRNAGVSIESLIEFCRLAQLPKNENIQAQQKQILNKQLEELNENLKTIHDARDLLQYKIDNYDNHIAKINASDNQETNVERLWERK
>AP018562.1|BBD86888.1|2218871_2219720_-|aldo/keto-reductase
MNHIDISKDVKIPVLGFGVFQIPQEQTAEAVKEAIKAGYRHIDTAQSYLNETEVGQGIEASGIDRSELFITTKVWIENVNYEGTIKSIERSLQRLKLDYIDLVLIHQPYNDVYGSWRALEELKENGKIKAIGVSNFGVDRIVDLGIHNQIQPQVNQIEINPFHQQEEQVAALQKENVVVEAWAPFAEGKNQLFQNQLLQGIADKYNKSIAQVILRWLVERDIVVLAKSVNPARMAQNLDIFDFELTEEDKQQIATLEESNSQFFSHADPEMVKALSSRKLNV
>AP018562.1|BBD86887.1|2217697_2218447_-|hypothetical-protein
MKFKIFKSFICLVTFAVLLSGFGNIQAQEENVLIKENSQVADSISHADVTESKTGEISTVNTSVKDEEVSLNTTLTNNFETGEINLNGKIGNNKEEKNINYSVDLTYADENDIAGYLIDNKTGEKHPFDTRLSEASAAPLVVVAVMAARFGIKWAIKKYGKNVVNKAVKTNTHNIAKNVNKSLLNDKGVSIGKFTQKVKGKNPTWRDPKTKWTISKNKGQPHGGSYWKLINNKGKRIASLTKEGKILRE
>AP018562.1|BBD86886.1|2217075_2217684_-|DUF3885-domain-containing-protein
MSFDINNLDIKKLNFRKMKNAIHLSLSGDKYQLLENGKTINNTYFLAVYDNAINIFEDLFSPSDSINLVHVVYVYNEPYKKTNVIKKFTSLTIDELHYFKEYKKEKDDNILCEEFSYKCSIKDIKYKKLLKAISNQDFKGLVPNINQNDTYSEIYIINNTKNLIYHLYDDRGLWLAFNNNEDYARYSEKYNDLISEFDNEDI
>AP018562.1|BBD86896.1|2229867_2231304_-|ATP-dependent-DNA-helicase
MTSSKYIEYLQTEVEGQLLDRKKASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIVEVKKPNGTMDEILIFDIESSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVGEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINAIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKDYFLDDPVYSEPNNSSVQLALKNNIVARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>AP018562.1|BBD86897.1|2231652_2232051_-|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>AP018562.1|BBD86898.1|2232064_2232502_-|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>AP018562.1|BBD86899.1|2232741_2233545_-|tRNA-pseudouridine(38-40)-synthase
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTDLNIPVEQWQYAMNRTLPDDIYVKNVDTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAHQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND
>AP018562.1|BBD86900.1|2233549_2234215_-|energy-coupling-factor-transporter-transmembrane-protein
MFVLILLFMKLAKIQFWFLIKGLTPIFFFLIFTLLMHIFLTKGGHVLFEWHGITIETNGILEGIYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLSPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVQRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>AP018562.1|BBD86901.1|2234345_2235206_-|energy-coupling-factor-transporter-ATPase
MSIKFDDVSYTYQQGTPYQHQAIHDINTEFEQGKYYAIVGQTGSGKSTLIQNINALIKPTRGTVTIDGVTVTHKTKDKFIRPLRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMDLDEAKSYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQSKRQVMSLLKSLQTNENKTIILISHDMNEVARYADEVIVMNEGSIVSQTSPKELFKDKEKLADWHIGLPEIVQLQYDFEQKYQTKLKDIALTEEAFVSLYKEWQHEK
>AP018562.1|BBD86902.1|2235202_2236012_-|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNSQVVTDDNIEKLRKEIGIVFQNPENQFVGSIVKYDVAFGLENHAVPHDEMHKRVNEALEQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPNARHNLLNLVRKVKEEHDITIISITHDLSEAMEADHVIVMNKGNVYKEGTATDIFDQAEALTKIGLDLPFSIKMSQLLGHHTSFLTYEGLVNRL
>AP018562.1|BBD86903.1|2236503_2236872_-|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>AP018562.1|BBD86904.1|2236888_2237833_-|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>AP018562.1|BBD86905.1|2237906_2238296_-|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV

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Crispr_ID: AP018562_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018562_10

2581258-2581352

Orphan

Consensus_repeat	Method
TCATTATTTTCCAAATAATAAGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018562_10

>merge|AP018562|10|2581258-2581352|CRISPRCasFinder
TCATTATTTTCCAAATAATAAGTGCACTATGGTTTACAGTTGGACCTTCGCTCCAACTGCATAAGAGCCACTAATTATTTTCCAAATAATAAGTG

>AP018562|10|9|2581258-2581352|CRISPRCasFinder
TCATTATTTTCCAAATAATAAGTG	CACTATGGTTTACAGTTGGACCTTCGCTCCAACTGCATAAGAGCCAC
TAATTATTTTCCAAATAATAAGTG

Protein	Signature genes	Signature genes Name	Protein_function
AP018562.1\|BBD87252.1\|2590089_2591145_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
AP018562.1\|BBD87248.1\|2584510_2585305_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
AP018562.1\|BBD87239.1\|2574760_2575309_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
AP018562.1\|BBD87245.1\|2581365_2581581_+\|copper-chaperone	unknown	unknown	gnl\|CDD\|225328
AP018562.1\|BBD87246.1\|2581670_2582669_-\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|181499
AP018562.1\|BBD87243.1\|2578219_2578420_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD87237.1\|2571663_2571891_-\|ferrous-iron-transporter-A	unknown	unknown	gnl\|CDD\|224830
AP018562.1\|BBD87254.1\|2592518_2592881_+\|hypothetical-protein	unknown	unknown	unknown
AP018562.1\|BBD87238.1\|2572137_2574597_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
AP018562.1\|BBD87249.1\|2585664_2587482_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
AP018562.1\|BBD87251.1\|2588753_2589569_-\|transglycosylase	unknown	unknown	gnl\|CDD\|381607
AP018562.1\|BBD87241.1\|2575663_2577208_-\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|179543
AP018562.1\|BBD87244.1\|2578657_2581066_+\|Cu(2+)-exporting-ATPase	unknown	unknown	gnl\|CDD\|319783
AP018562.1\|BBD87236.1\|2569669_2571652_-\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
AP018562.1\|BBD87250.1\|2587999_2588443_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
AP018562.1\|BBD87253.1\|2591539_2592109_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
AP018562.1\|BBD87235.1\|2569486_2569666_-\|FeoB-associated-Cys-rich-membrane-protein	unknown	unknown	gnl\|CDD\|378908
AP018562.1\|BBD87247.1\|2582691_2583855_-\|N-succinyldiaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181219
AP018562.1\|BBD87242.1\|2577402_2578011_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
AP018562.1\|BBD87240.1\|2575384_2575528_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018562.1\|BBD87252.1\|2590089_2591145_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.53206e-113
AP018562.1\|BBD87242.1\|2577402_2578011_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.02494e-94
AP018562.1\|BBD87239.1\|2574760_2575309_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.01438e-09
AP018562.1\|BBD87245.1\|2581365_2581581_+\|copper-chaperone	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	8.23028e-21
AP018562.1\|BBD87246.1\|2581670_2582669_-\|D-lactate-dehydrogenase	gnl\|CDD\|181499	PRK08605, PRK08605, D-lactate dehydrogenase; Validated.	0
AP018562.1\|BBD87237.1\|2571663_2571891_-\|ferrous-iron-transporter-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	4.82022e-18
AP018562.1\|BBD87248.1\|2584510_2585305_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	4.55881e-29
AP018562.1\|BBD87238.1\|2572137_2574597_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	8.17387e-162
AP018562.1\|BBD87249.1\|2585664_2587482_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.7831e-85
AP018562.1\|BBD87251.1\|2588753_2589569_-\|transglycosylase	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	2.13275e-07
AP018562.1\|BBD87241.1\|2575663_2577208_-\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|179543	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional.	0
AP018562.1\|BBD87244.1\|2578657_2581066_+\|Cu(2+)-exporting-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
AP018562.1\|BBD87236.1\|2569669_2571652_-\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
AP018562.1\|BBD87250.1\|2587999_2588443_-\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.70129e-13
AP018562.1\|BBD87235.1\|2569486_2569666_-\|FeoB-associated-Cys-rich-membrane-protein	gnl\|CDD\|378908	pfam12669, P12, Virus attachment protein p12 family. This family of proteins are related to Virus attachment protein p12 from the African swine fever virus. The family appears to contain an N-terminal signal peptide followed by a short cysteine rich region. The cysteine rich region is extremely variable and it is possible that only the N-terminal region is homologous.	0.000102103
AP018562.1\|BBD87247.1\|2582691_2583855_-\|N-succinyldiaminopimelate-aminotransferase	gnl\|CDD\|181219	PRK08068, PRK08068, transaminase; Reviewed.	2.82001e-143
AP018562.1\|BBD87253.1\|2591539_2592109_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.96709e-08

>AP018562.1|BBD87244.1|2578657_2581066_+|Cu(2+)-exporting-ATPase
MANTKKTTLDITGMTCAACSNRIEKKLNKLDDVNAQVNLTTEKATVEYNPDQHDVQEFINTIQHLGYGVAVETVELDITGMTCAACSSRIEKVLNKMDGVQKATVNLTTEQAKVDYYPEETDANQLITRIQKLGYDAAVKDKNKDQASRKTKELQHKLIKLIISAALSLPLLMLMFVHLFNMHIPSLFMNPWFQFILATPVQFIIGWQFYVGAYKNLRNGGANMDVLVAVGTSAAYFYSIYEMLRWLSGVTTQPHLYFETSAVLITLILFGKYLEARAKSQTTNALGELLSLQAKEARILKDGNEIMIPLNDVRVGDTLIVKPGEKIPVDGTIIKGMTSIDESMLTGESIPVEKNVEDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITLVTPGIFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYHGDDQTLQLLATAEKDSEHPLAEAIVNYAKDKHMQLTETTSFKAVPGHGIEATIEDHHILVGNRKLMAENDISLPKHISDDLTNYEQDGKTAMLIAVNHSLTGIIAVADTVKEHAKDAIKQLHDMGIEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQIAKLQQQGKKVAMVGDGVNDAPALVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAAMGLLAPWVAGAAMALSSVSVVTNALRLKKMRLEPRRKDA
>AP018562.1|BBD87243.1|2578219_2578420_+|hypothetical-protein
MIAMRILLTGTVAILIILGLVKTIQDQEMTNDTSRQLSDNKDDDKVIHLNNFKNLHAKEFNPSDFF
>AP018562.1|BBD87242.1|2577402_2578011_-|sugar-O-acetyltransferase
MEDAMTEKEKMLAQEWYDANFDQDLINERAHAKDLCFELNHTRPSDTKRRKQLIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHQRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPSNSLAVGNPCKVIREIDNEFSDGQFGGKNG
>AP018562.1|BBD87241.1|2575663_2577208_-|L-glutamate-gamma-semialdehyde-dehydrogenase
MVVEFKNEPGYDFSVQENVDMFKKALKDVEKELGQDIPLVINGEKIFKDDKIKSINPADTSQVIANASKATKEDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDEKIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEGKLEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNNFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF
>AP018562.1|BBD87240.1|2575384_2575528_-|hypothetical-protein
MGIVLAIWSFKQLSQSHLDSGFILFFIVYVLCISYFNSDKQTKNKKR
>AP018562.1|BBD87239.1|2574760_2575309_+|TetR/AcrR-family-transcriptional-regulator
MKETDLRVIKTKKALSSSLLQLLEQQLFQTITVNQICDNALVHRTTFYKHFYDKYDLLEYLFNQLTKDYFARDISDRLNHPFQTISDTINNKEDLREIAEFQEEDSEFNKVLKNVCIKIMHDDIKNNRDRIDIDSDVPDNLIFYIYDSLIEGFMHWIKDEKIDWPGEDIDNIFHRLINIKIK
>AP018562.1|BBD87238.1|2572137_2574597_-|MMPL-family-transporter
MGTFIAKHKWSALIAWVVIVAAIFIPIATNAPKFDNDIKMTGLKSLDTNDKIEKHFNQDSEKAQIRVVFKTTKDDGIVQPSITKDIKKTLNDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVNQTSLKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTDVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDHIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVISALTLLPALISIFHKRIKVNKLQSKFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYDIISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDNEYALMVVIPKHGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIPLFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLLATLGFTTLVMQDGFMKGLFGIETTGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEEYSKTGDNDYAIKVGLKESGPVIVAAALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFIVRMMLIPALTKLFGKGSWYLPPWLNRIIPRVDIEGHALEKYKTVESQTSEVENSKEKYDTTFKVHDQDTHVAKGSQLRDETQTIVLDNRTMALYQQVKQHSANPMFLHDALVDYQNKHHLNTQQQTTNIDQLNKNIEKLNQLLEQNLRDKS
>AP018562.1|BBD87237.1|2571663_2571891_-|ferrous-iron-transporter-A
MLNVRNGEKNKIYKIKQIDINNMNMLYRLSAFGLTDGSTIKIKQKCLFKGPCIIEINGQQLSIRHCDACCIALEE
>AP018562.1|BBD87236.1|2569669_2571652_-|ferrous-iron-transport-protein-B
MENYCILGNPNVGKTSLFNALTGSYEYVGNWSGVTVEKKVGKLKHHLGELIDLPGTYDLSPISVDETIVTDYLLNNQFTGMINIVDASQLKRNMQLTIQLLELNKPMYIGLNMIDVATKRGIHIDYHKLMKKLKTPIFPVVARTGKGTDHLLGEIKYLGEEAQPHFKLNYGEMIESAIKDICQFIMAETTHSNYEARFIAIQYLLDNIQITKELSQHLLDKLLTIRQRLIQKLNGTTIRREMERIRNQFIDMLLQDIVKYPDEDKQFFSTKLDKILTHKYLGIPIFLGIMWLIFQTTFTWIGTPLSDQLDAFIGGTLTDGVSHLGLIPFLQDLITDGIIAGVGSVLVFVPQIVVLFFFISLLEDSGYMARIAVLMDRIMESFGLSGKSFIPMIIGFGCNVPSVMAARSIENEKERLTTILIAPFMSCSARLPVYALFVGIFFKENQSLVVLSLYVLGIVIAFLVSTVLTKTVLKNDNAIFIVELPTYRVPSIKTLWRSTWEKAKGFVRKAGTFIFGGSVVIWLLSYVGPHGINVNINDSFLHMVGSFFGMLVQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSGDAGLIHVIQDQFTPLSAYAFMIFILLYIPCVSTVAAIRKETYSWKWTVLAVVYPLLTAYVLTFIFYQVGHLFV
>AP018562.1|BBD87235.1|2569486_2569666_-|FeoB-associated-Cys-rich-membrane-protein
MVEMTVMINILIFLAIFGYAFYTLVKFFKRSKQGKCGTCEIDNDCCSTEQQVVKHFPGK
>AP018562.1|BBD87245.1|2581365_2581581_+|copper-chaperone
MNAMSQEILNVEGMSCGHCKSAVESALNNIDGVTSAEVNLENGQVSVQYDDSKVAVSQMKDAIEDQGYDVV
>AP018562.1|BBD87246.1|2581670_2582669_-|D-lactate-dehydrogenase
MTKIKIMSVRDEDMPYIKAWAEKHQVEVDITKDALTDANVETVAGYDGLSLSQQIPLSEQVYKRLNELGIKQIAQRSAGFDTYDLELASKYNLIVSNVPSYSPNSIAEFAVNQAINVVRHFNQIQTKVRAHDFRWEPSILSKSIKDLKVAVIGTGRIGRVVADIFANGYQSEIIAYDPFPNAKVATYVEYKDTIEEAIEGADIVTLHIPATKYNHYLFDAKLFEHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEYERKLFPSDQRGKPLNDPLLESLIDREDVILTPHIAFYTEAAVENLIVDALDATLDVLQTGDTKLRVN
>AP018562.1|BBD87247.1|2582691_2583855_-|N-succinyldiaminopimelate-aminotransferase
MDMMISNKLAGVPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIINHFAEALRIPENQKYGAFHGKESFKQAIVDFYQRQYDVTLDKEEEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVTLNLEPPHYLPEWSKVDPQILEKTKLIYLTYPNNPTGSTATKEVFDEAIARVKGTDTKIVHDFAYGAFGFDAKNPSILSSENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDIIQALKKYQTHTNAGMFGALQDAAVYALNHYDDFLEEQSNVFKARRDRFEGILAKANLPFVHAKGGIYAWLKTPPGYDSEQFEQFLVKEKSILVAPGKPFGDNGNHYVRISLALDDQQLDEAATRLTDLAYLYH
>AP018562.1|BBD87248.1|2584510_2585305_-|CHAP-domain-containing-protein
MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNPNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLEQNNTYYYNNNNTYNTSYNNYSYSNYNNYNRSYQSSNYSYNNYTYNNQASSNYYHTGGSGASYTTTSNNVHVTSTVAPSSNGRSISNGYASGSNLYTSGQCTYYVFNRVGGKIGSTWGNASNWASAAASAGYTVNNTPKAGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISASQAGSYNFIH
>AP018562.1|BBD87249.1|2585664_2587482_-|acetyltransferase
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGILIYHLNTQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPDLIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLIFPLVITFLLHRFKPRNIIQTLFVVSLISLGLMMVIHLVTGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKVVASLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFVTLFIIAIAVHPSSLFAKFLSMKPFLIIGKRSYSLYLWHYPIIVFMNSYYVQGQIPAYVYVIEILLTALMAEISYRFIETPIRKNGFKAFAFLPKKKSQFIRTILVILLLIPTITVLAGQFDALGKQHETQKKEKKTEFKTTKKKVDKKDKAKQDDKQKANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGDFTKDQLNELLDSFGKADIYLVSIRVPRNYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHSSNKK
>AP018562.1|BBD87250.1|2587999_2588443_-|N-acetyltransferase
MIGFILSIQKNEFNINIDRNDQPDLENIEQNYLNNGGQFWLAINDQQKIIGTIGLIKLDNNKSALKKMFVDENYRNLKVGKKLLDIVVTTCKENNIDGIYLGTIDKFISAQYFYSKNGFREINQKDLPSSFPKLDVDNRFYYRNLIG
>AP018562.1|BBD87251.1|2588753_2589569_-|transglycosylase
MITVERNKRHFELALRHLNSNIITKNIKLTIITGGFFTMKKTIMASSLAVALGVTGYAASTGHEAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSDVQSVSYNAQSSNSNVAAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTGTVDQQINAAVKAYNAQGLSAWGF
>AP018562.1|BBD87252.1|2590089_2591145_-|PTS-transporter-subunit-IIC
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALIAMKFDLSPLAIAVVSSAAYVGSGAAQFKNGAWVIAGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTRMITTGIGNMVNGFTELQPIIMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNIVKYPILMLPILTTAIVSGLVSAIVGIYGTKESAGFGFIGMVGPINAFKFMHVDSAWLSVLLIVVAFFVVPFLTAWVADIIYRKVFRLYTNDIFKFMG
>AP018562.1|BBD87253.1|2591539_2592109_+|TetR/AcrR-family-transcriptional-regulator
MMENKSTDPRIIRTKQLLVDAFQKVSREKKLSQITVKDITDIATVNRATFYAHFTDKEDILDYTLSVTILKDLNDNLNISNVINEKVLRNIFISIASYMKDVEKSCELNSEAFCHKAHQRINNELEDIFAIMLENSYPDHQRDIIVNSASFLAAGVSGLALHWLNTSQDSADVFIDKNLPFLIHHIAHF
>AP018562.1|BBD87254.1|2592518_2592881_+|hypothetical-protein
MGFEYTHVHIPLMYQSGSKYVLSIGDTKLKLKSKQIMKVIAHSVQQIVYQMKYENYITQFDDGLNRSHKFGFKQSNKMLFIFAQFNKMSSDKVSFYAQHRHPFISTNFPNTTSTSLLPSN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP018562_5	5.1\|1047964\|29\|AP018562\|CRISPRCasFinder	1047964-1047992	29	AP018562.1	1047853-1047881	2	0.931

1. spacer 5.1|1047964|29|AP018562|CRISPRCasFinder matches to position: 1047853-1047881, mismatch: 2, identity: 0.931

gaaattggaaccctaaattctacaggcaa	CRISPR spacer
gaaattggaacccaaaattctacagacaa	Protospacer
************* ***********.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_021332	Staphylococcus phage StauST398-3, complete genome	12135-12169	0	1.0
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AP019522	Staphylococcal phage MR003 DNA, complete genome	13704-13738	0	1.0
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_021332	Staphylococcus phage StauST398-3, complete genome	12134-12169	0	1.0
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AP019522	Staphylococcal phage MR003 DNA, complete genome	13704-13739	0	1.0
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	GQ398772	Staphylococcus phage P954, complete genome	13782-13816	1	0.971
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MK801682	Staphylococcus phage SAP33, complete genome	18691-18725	1	0.971
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MK801683	Staphylococcus phage SAP40, complete genome	16964-16998	1	0.971
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AY954967	Bacteriophage 92, complete genome	38898-38932	1	0.971
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_007064	Staphylococcus phage 92, complete genome	38898-38932	1	0.971
AP018562_1	1.4\|46779\|35\|AP018562\|CRT	46779-46813	35	NZ_CP029650	Staphylococcus aureus strain AR_0471 plasmid unnamed1, complete sequence	34237-34271	1	0.971
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	GQ398772	Staphylococcus phage P954, complete genome	13781-13816	1	0.972
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MK801682	Staphylococcus phage SAP33, complete genome	18690-18725	1	0.972
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MK801683	Staphylococcus phage SAP40, complete genome	16963-16998	1	0.972
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AY954967	Bacteriophage 92, complete genome	38897-38932	1	0.972
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_007064	Staphylococcus phage 92, complete genome	38897-38932	1	0.972
AP018562_1	1.8\|46779\|36\|AP018562\|CRISPRCasFinder	46779-46814	36	NZ_CP029650	Staphylococcus aureus strain AR_0471 plasmid unnamed1, complete sequence	34237-34272	1	0.972
AP018562_1	1.1\|46560\|34\|AP018562\|PILER-CR,CRT	46560-46593	34	KP881332	Staphylococcus phage Stau2, complete genome	110434-110467	2	0.941
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_007063	Staphylococcus phage 88, complete genome	39701-39735	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AY954966	Bacteriophage 88, complete genome	39701-39735	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MT366568	Staphylococcus phage R4, complete genome	36266-36300	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	JX274647	Staphylococcus phage SP6, complete genome	13329-13363	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KC677663	Staphylococcus phage SA12, complete genome	8367-8401	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MT013111	Staphylococcus phage SA75, complete genome	39965-39999	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	JX274646	Staphylococcus phage SP5, complete genome	13104-13138	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	JX094501	Staphylococcus phage SA13, complete genome	12899-12933	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MG557619	Staphylococcus phage HSA84, complete genome	39738-39772	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_021773	Staphylococcus phage JS01, complete genome	23461-23495	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MH401414	Staphylococcus aureus phage SA45ruMSSAST97, complete genome	23459-23493	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MH401415	Staphylococcus aureus phage SA537ruMSSAST97, complete genome	23461-23495	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	HQ127381	Staphylococcus phage TEM126, complete sequence	861-895	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_017968	Staphylococcus phage TEM123, complete genome	40667-40701	2	0.943
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_048658	Staphylococcus phage SA7, complete genome	9246-9280	2	0.943
AP018562_1	1.5\|46560\|35\|AP018562\|CRISPRCasFinder	46560-46594	35	KP881332	Staphylococcus phage Stau2, complete genome	110433-110467	2	0.943
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_007063	Staphylococcus phage 88, complete genome	39700-39735	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AY954966	Bacteriophage 88, complete genome	39700-39735	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MT366568	Staphylococcus phage R4, complete genome	36265-36300	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	JX274647	Staphylococcus phage SP6, complete genome	13328-13363	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KC677663	Staphylococcus phage SA12, complete genome	8366-8401	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MT013111	Staphylococcus phage SA75, complete genome	39964-39999	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	JX274646	Staphylococcus phage SP5, complete genome	13103-13138	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	JX094501	Staphylococcus phage SA13, complete genome	12898-12933	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MG557619	Staphylococcus phage HSA84, complete genome	39737-39772	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_021773	Staphylococcus phage JS01, complete genome	23460-23495	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MH401414	Staphylococcus aureus phage SA45ruMSSAST97, complete genome	23458-23493	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MH401415	Staphylococcus aureus phage SA537ruMSSAST97, complete genome	23460-23495	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	HQ127381	Staphylococcus phage TEM126, complete sequence	860-895	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_017968	Staphylococcus phage TEM123, complete genome	40667-40702	2	0.944
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_048658	Staphylococcus phage SA7, complete genome	9245-9280	2	0.944
AP018562_1	1.1\|46560\|34\|AP018562\|PILER-CR,CRT	46560-46593	34	KY779848	Staphylococcus phage qdsa001, complete genome	5628-5661	3	0.912
AP018562_1	1.1\|46560\|34\|AP018562\|PILER-CR,CRT	46560-46593	34	JX194239	Staphylococcus phage SA11, complete genome	15984-16017	3	0.912
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MG770897	Staphylococcus phage SH-St 15644, complete genome	36655-36689	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KR709302	Staphylococcus phage 55-2, complete genome	12094-12128	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KM389222	UNVERIFIED: Staphylococcus phage Phi05_2289 M, S, UV clone contig00001 genomic sequence	11469-11503	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MF417949	Uncultured Caudovirales phage clone 7S_9, partial genome	11771-11805	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AY954962	Bacteriophage 71, complete genome	39797-39831	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AB370268	Staphylococcus phage phiMR11 DNA, complete genome	13137-13171	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AY508486	Bacteriophage 77, complete genome	36497-36531	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_005356	Staphylococcus phage 77, complete genome	36497-36531	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KM389418	UNVERIFIED: Staphylococcus phage Phi06_3106 B clone contig00003 genomic sequence	33-67	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_028669	Staphylococcus phage phiJB, complete genome	13048-13082	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MK801681	Staphylococcus phage SAP11, complete genome	29992-30026	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_004616	Staphylococcus prophage phi 12, complete genome	12430-12464	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	JQ957932	Staphylococcus phage StauST398-2, complete genome	12417-12451	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AY954963	Bacteriophage 55, complete genome	39206-39240	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AB370205	Staphylococcus phage phiMR25 DNA, complete genome	13382-13416	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MK290764	Staphylococcus virus B122, complete genome	12847-12881	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AF424782	Staphylococcus aureus phage phi 12, complete genome	12430-12464	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	JQ779023	Staphylococcus phage SMSAP5, complete genome	9240-9274	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	EU861005	Staphylococcus phage phiSauS-IPLA35, complete genome	11940-11974	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MG029509	Staphylococcus phage phiSa2wa_st5, complete genome	13941-13975	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_007059	Staphylococcus phage 71, complete genome	39797-39831	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KR709303	Staphylococcus phage 55-3, complete genome	12527-12561	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KF598856	Staphylococcus phage YMC/09/04/R1988, complete genome	36302-36336	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MK618716	Staphylococcus phage Sebago, complete genome	32362-32396	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	AY954957	Bacteriophage 47, complete genome	36677-36711	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KM389280	UNVERIFIED: Staphylococcus phage Phi06_2986 B clone contig00001 genomic sequence	10891-10925	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MK801680	Staphylococcus phage SAP8, complete genome	36261-36295	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_007054	Staphylococcus phage 47, complete genome	36677-36711	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_010147	Staphylococcus phage phiMR11, complete genome	13137-13171	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	KP893289	Staphylococcus phage B166, complete genome	12696-12730	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_010808	Staphylococcus phage phiMR25, complete genome	13382-13416	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	NC_007060	Staphylococcus phage 55, complete genome	39206-39240	3	0.914
AP018562_1	1.3\|46707\|35\|AP018562\|PILER-CR,CRT	46707-46741	35	MN904510	Staphylococcus phage vB_SauS-SAP27, complete genome	8900-8934	3	0.914
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MG770897	Staphylococcus phage SH-St 15644, complete genome	36654-36689	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KR709302	Staphylococcus phage 55-2, complete genome	12093-12128	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KM389222	UNVERIFIED: Staphylococcus phage Phi05_2289 M, S, UV clone contig00001 genomic sequence	11468-11503	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MF417949	Uncultured Caudovirales phage clone 7S_9, partial genome	11771-11806	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AY954962	Bacteriophage 71, complete genome	39796-39831	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AB370268	Staphylococcus phage phiMR11 DNA, complete genome	13136-13171	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AY508486	Bacteriophage 77, complete genome	36496-36531	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_005356	Staphylococcus phage 77, complete genome	36496-36531	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KM389418	UNVERIFIED: Staphylococcus phage Phi06_3106 B clone contig00003 genomic sequence	32-67	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_028669	Staphylococcus phage phiJB, complete genome	13047-13082	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MK801681	Staphylococcus phage SAP11, complete genome	29992-30027	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_004616	Staphylococcus prophage phi 12, complete genome	12429-12464	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	JQ957932	Staphylococcus phage StauST398-2, complete genome	12416-12451	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AY954963	Bacteriophage 55, complete genome	39205-39240	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AB370205	Staphylococcus phage phiMR25 DNA, complete genome	13381-13416	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MK290764	Staphylococcus virus B122, complete genome	12846-12881	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AF424782	Staphylococcus aureus phage phi 12, complete genome	12429-12464	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	JQ779023	Staphylococcus phage SMSAP5, complete genome	9240-9275	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	EU861005	Staphylococcus phage phiSauS-IPLA35, complete genome	11939-11974	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MG029509	Staphylococcus phage phiSa2wa_st5, complete genome	13940-13975	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_007059	Staphylococcus phage 71, complete genome	39796-39831	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KR709303	Staphylococcus phage 55-3, complete genome	12526-12561	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KF598856	Staphylococcus phage YMC/09/04/R1988, complete genome	36301-36336	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MK618716	Staphylococcus phage Sebago, complete genome	32362-32397	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	AY954957	Bacteriophage 47, complete genome	36676-36711	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KM389280	UNVERIFIED: Staphylococcus phage Phi06_2986 B clone contig00001 genomic sequence	10890-10925	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MK801680	Staphylococcus phage SAP8, complete genome	36260-36295	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_007054	Staphylococcus phage 47, complete genome	36676-36711	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_010147	Staphylococcus phage phiMR11, complete genome	13136-13171	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	KP893289	Staphylococcus phage B166, complete genome	12695-12730	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_010808	Staphylococcus phage phiMR25, complete genome	13381-13416	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	NC_007060	Staphylococcus phage 55, complete genome	39205-39240	3	0.917
AP018562_1	1.7\|46707\|36\|AP018562\|CRISPRCasFinder	46707-46742	36	MN904510	Staphylococcus phage vB_SauS-SAP27, complete genome	8900-8935	3	0.917
AP018562_9	9.1\|2229741\|34\|AP018562\|CRISPRCasFinder	2229741-2229774	34	MK448444	Streptococcus satellite phage Javan343, complete genome	3190-3223	7	0.794
AP018562_1	1.4\|46779\|35\|AP018562\|CRT	46779-46813	35	MT119360	Enterococcus phage nattely, complete genome	70459-70493	8	0.771
AP018562_1	1.8\|46779\|36\|AP018562\|CRISPRCasFinder	46779-46814	36	MT119360	Enterococcus phage nattely, complete genome	70459-70494	9	0.75

1. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_021332 (Staphylococcus phage StauST398-3, complete genome) position: , mismatch: 0, identity: 1.0

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctagtctcatttctt	Protospacer
***********************************

2. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AP019522 (Staphylococcal phage MR003 DNA, complete genome) position: , mismatch: 0, identity: 1.0

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctagtctcatttctt	Protospacer
***********************************

3. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_021332 (Staphylococcus phage StauST398-3, complete genome) position: , mismatch: 0, identity: 1.0

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctagtctcatttcttt	Protospacer
************************************

4. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AP019522 (Staphylococcal phage MR003 DNA, complete genome) position: , mismatch: 0, identity: 1.0

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctagtctcatttcttt	Protospacer
************************************

5. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to GQ398772 (Staphylococcus phage P954, complete genome) position: , mismatch: 1, identity: 0.971

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttctt	Protospacer
.**********************************

6. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MK801682 (Staphylococcus phage SAP33, complete genome) position: , mismatch: 1, identity: 0.971

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttctt	Protospacer
.**********************************

7. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MK801683 (Staphylococcus phage SAP40, complete genome) position: , mismatch: 1, identity: 0.971

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttctt	Protospacer
.**********************************

8. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AY954967 (Bacteriophage 92, complete genome) position: , mismatch: 1, identity: 0.971

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttctt	Protospacer
.**********************************

9. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_007064 (Staphylococcus phage 92, complete genome) position: , mismatch: 1, identity: 0.971

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttctt	Protospacer
.**********************************

10. spacer 1.4|46779|35|AP018562|CRT matches to NZ_CP029650 (Staphylococcus aureus strain AR_0471 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971

ttaaagatctcaacaatagcgtcccatattttctg	CRISPR spacer
ttaaagaactcaacaatagcgtcccatattttctg	Protospacer
******* ***************************

11. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to GQ398772 (Staphylococcus phage P954, complete genome) position: , mismatch: 1, identity: 0.972

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttcttt	Protospacer
.***********************************

12. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MK801682 (Staphylococcus phage SAP33, complete genome) position: , mismatch: 1, identity: 0.972

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttcttt	Protospacer
.***********************************

13. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MK801683 (Staphylococcus phage SAP40, complete genome) position: , mismatch: 1, identity: 0.972

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttcttt	Protospacer
.***********************************

14. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AY954967 (Bacteriophage 92, complete genome) position: , mismatch: 1, identity: 0.972

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttcttt	Protospacer
.***********************************

15. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_007064 (Staphylococcus phage 92, complete genome) position: , mismatch: 1, identity: 0.972

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctagtctcatttcttt	Protospacer
.***********************************

16. spacer 1.8|46779|36|AP018562|CRISPRCasFinder matches to NZ_CP029650 (Staphylococcus aureus strain AR_0471 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.972

ttaaagatctcaacaatagcgtcccatattttctgt	CRISPR spacer
ttaaagaactcaacaatagcgtcccatattttctgt	Protospacer
******* ****************************

17. spacer 1.1|46560|34|AP018562|PILER-CR,CRT matches to KP881332 (Staphylococcus phage Stau2, complete genome) position: , mismatch: 2, identity: 0.941

ctataatagttactgcttttgtaaccgtccatat	CRISPR spacer
ctatagtagttactgcttttgtaaccgtccatgt	Protospacer
*****.**************************.*

18. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_007063 (Staphylococcus phage 88, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

19. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AY954966 (Bacteriophage 88, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

20. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MT366568 (Staphylococcus phage R4, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctagtttcatttctt	Protospacer
.************************.*********

21. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to JX274647 (Staphylococcus phage SP6, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

22. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KC677663 (Staphylococcus phage SA12, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

23. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MT013111 (Staphylococcus phage SA75, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

24. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to JX274646 (Staphylococcus phage SP5, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

25. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to JX094501 (Staphylococcus phage SA13, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

26. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MG557619 (Staphylococcus phage HSA84, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttctt	Protospacer
.********************.*************

27. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_021773 (Staphylococcus phage JS01, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttctt	Protospacer
***********************.* *********

28. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MH401414 (Staphylococcus aureus phage SA45ruMSSAST97, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttctt	Protospacer
***********************.* *********

29. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MH401415 (Staphylococcus aureus phage SA537ruMSSAST97, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttctt	Protospacer
***********************.* *********

30. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to HQ127381 (Staphylococcus phage TEM126, complete sequence) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttctt	Protospacer
***********************.* *********

31. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_017968 (Staphylococcus phage TEM123, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttctt	Protospacer
***********************.* *********

32. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_048658 (Staphylococcus phage SA7, complete genome) position: , mismatch: 2, identity: 0.943

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttctt	Protospacer
***********************.* *********

33. spacer 1.5|46560|35|AP018562|CRISPRCasFinder matches to KP881332 (Staphylococcus phage Stau2, complete genome) position: , mismatch: 2, identity: 0.943

ctataatagttactgcttttgtaaccgtccatatc	CRISPR spacer
ctatagtagttactgcttttgtaaccgtccatgtc	Protospacer
*****.**************************.**

34. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_007063 (Staphylococcus phage 88, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

35. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AY954966 (Bacteriophage 88, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

36. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MT366568 (Staphylococcus phage R4, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctagtttcatttcttt	Protospacer
.************************.**********

37. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to JX274647 (Staphylococcus phage SP6, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

38. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KC677663 (Staphylococcus phage SA12, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

39. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MT013111 (Staphylococcus phage SA75, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

40. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to JX274646 (Staphylococcus phage SP5, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

41. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to JX094501 (Staphylococcus phage SA13, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

42. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MG557619 (Staphylococcus phage HSA84, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatccagtctcatttcttt	Protospacer
.********************.**************

43. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_021773 (Staphylococcus phage JS01, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttcttt	Protospacer
***********************.* **********

44. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MH401414 (Staphylococcus aureus phage SA45ruMSSAST97, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttcttt	Protospacer
***********************.* **********

45. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MH401415 (Staphylococcus aureus phage SA537ruMSSAST97, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttcttt	Protospacer
***********************.* **********

46. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to HQ127381 (Staphylococcus phage TEM126, complete sequence) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttcttt	Protospacer
***********************.* **********

47. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_017968 (Staphylococcus phage TEM123, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttcttt	Protospacer
***********************.* **********

48. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_048658 (Staphylococcus phage SA7, complete genome) position: , mismatch: 2, identity: 0.944

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
tgcccacttaattaattcatctaatgtcatttcttt	Protospacer
***********************.* **********

49. spacer 1.1|46560|34|AP018562|PILER-CR,CRT matches to KY779848 (Staphylococcus phage qdsa001, complete genome) position: , mismatch: 3, identity: 0.912

ctataatagttactgcttttgtaaccgtccatat	CRISPR spacer
ctatagtagttattgcttttgtaaccgtccatgt	Protospacer
*****.******.*******************.*

50. spacer 1.1|46560|34|AP018562|PILER-CR,CRT matches to JX194239 (Staphylococcus phage SA11, complete genome) position: , mismatch: 3, identity: 0.912

ctataatagttactgcttttgtaaccgtccatat	CRISPR spacer
ctatagtagttattgcttttgtaaccgtccatgt	Protospacer
*****.******.*******************.*

51. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MG770897 (Staphylococcus phage SH-St 15644, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

52. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KR709302 (Staphylococcus phage 55-2, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
agcccatttaattaattcatctaatctcatttctt	Protospacer
 *****.****************.***********

53. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KM389222 (UNVERIFIED: Staphylococcus phage Phi05_2289 M, S, UV clone contig00001 genomic sequence) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

54. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MF417949 (Uncultured Caudovirales phage clone 7S_9, partial genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

55. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AY954962 (Bacteriophage 71, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
agcccatttaattaattcatctaatctcatttctt	Protospacer
 *****.****************.***********

56. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AB370268 (Staphylococcus phage phiMR11 DNA, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

57. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AY508486 (Bacteriophage 77, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

58. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_005356 (Staphylococcus phage 77, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

59. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KM389418 (UNVERIFIED: Staphylococcus phage Phi06_3106 B clone contig00003 genomic sequence) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

60. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_028669 (Staphylococcus phage phiJB, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

61. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MK801681 (Staphylococcus phage SAP11, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

62. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_004616 (Staphylococcus prophage phi 12, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

63. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to JQ957932 (Staphylococcus phage StauST398-2, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

64. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AY954963 (Bacteriophage 55, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
agcccatttaattaattcatctaatctcatttctt	Protospacer
 *****.****************.***********

65. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AB370205 (Staphylococcus phage phiMR25 DNA, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

66. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MK290764 (Staphylococcus virus B122, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

67. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AF424782 (Staphylococcus aureus phage phi 12, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

68. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to JQ779023 (Staphylococcus phage SMSAP5, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

69. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to EU861005 (Staphylococcus phage phiSauS-IPLA35, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccacttaattaattcatctaatcgcatttctt	Protospacer
.**********************.** ********

70. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MG029509 (Staphylococcus phage phiSa2wa_st5, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

71. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_007059 (Staphylococcus phage 71, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
agcccatttaattaattcatctaatctcatttctt	Protospacer
 *****.****************.***********

72. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KR709303 (Staphylococcus phage 55-3, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
agcccatttaattaattcatctaatctcatttctt	Protospacer
 *****.****************.***********

73. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KF598856 (Staphylococcus phage YMC/09/04/R1988, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

74. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MK618716 (Staphylococcus phage Sebago, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

75. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to AY954957 (Bacteriophage 47, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

76. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KM389280 (UNVERIFIED: Staphylococcus phage Phi06_2986 B clone contig00001 genomic sequence) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

77. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MK801680 (Staphylococcus phage SAP8, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

78. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_007054 (Staphylococcus phage 47, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

79. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_010147 (Staphylococcus phage phiMR11, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

80. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to KP893289 (Staphylococcus phage B166, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

81. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_010808 (Staphylococcus phage phiMR25, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

82. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to NC_007060 (Staphylococcus phage 55, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
agcccatttaattaattcatctaatctcatttctt	Protospacer
 *****.****************.***********

83. spacer 1.3|46707|35|AP018562|PILER-CR,CRT matches to MN904510 (Staphylococcus phage vB_SauS-SAP27, complete genome) position: , mismatch: 3, identity: 0.914

tgcccacttaattaattcatctagtctcatttctt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttctt	Protospacer
.*****.****************.***********

84. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MG770897 (Staphylococcus phage SH-St 15644, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

85. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KR709302 (Staphylococcus phage 55-2, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
agcccatttaattaattcatctaatctcatttcttt	Protospacer
 *****.****************.************

86. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KM389222 (UNVERIFIED: Staphylococcus phage Phi05_2289 M, S, UV clone contig00001 genomic sequence) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

87. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MF417949 (Uncultured Caudovirales phage clone 7S_9, partial genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

88. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AY954962 (Bacteriophage 71, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
agcccatttaattaattcatctaatctcatttcttt	Protospacer
 *****.****************.************

89. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AB370268 (Staphylococcus phage phiMR11 DNA, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

90. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AY508486 (Bacteriophage 77, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

91. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_005356 (Staphylococcus phage 77, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

92. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KM389418 (UNVERIFIED: Staphylococcus phage Phi06_3106 B clone contig00003 genomic sequence) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

93. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_028669 (Staphylococcus phage phiJB, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

94. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MK801681 (Staphylococcus phage SAP11, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

95. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_004616 (Staphylococcus prophage phi 12, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

96. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to JQ957932 (Staphylococcus phage StauST398-2, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

97. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AY954963 (Bacteriophage 55, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
agcccatttaattaattcatctaatctcatttcttt	Protospacer
 *****.****************.************

98. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AB370205 (Staphylococcus phage phiMR25 DNA, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

99. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MK290764 (Staphylococcus virus B122, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

100. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AF424782 (Staphylococcus aureus phage phi 12, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

101. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to JQ779023 (Staphylococcus phage SMSAP5, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

102. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to EU861005 (Staphylococcus phage phiSauS-IPLA35, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccacttaattaattcatctaatcgcatttcttt	Protospacer
.**********************.** *********

103. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MG029509 (Staphylococcus phage phiSa2wa_st5, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

104. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_007059 (Staphylococcus phage 71, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
agcccatttaattaattcatctaatctcatttcttt	Protospacer
 *****.****************.************

105. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KR709303 (Staphylococcus phage 55-3, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
agcccatttaattaattcatctaatctcatttcttt	Protospacer
 *****.****************.************

106. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KF598856 (Staphylococcus phage YMC/09/04/R1988, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

107. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MK618716 (Staphylococcus phage Sebago, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

108. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to AY954957 (Bacteriophage 47, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

109. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KM389280 (UNVERIFIED: Staphylococcus phage Phi06_2986 B clone contig00001 genomic sequence) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

110. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MK801680 (Staphylococcus phage SAP8, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

111. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_007054 (Staphylococcus phage 47, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

112. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_010147 (Staphylococcus phage phiMR11, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

113. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to KP893289 (Staphylococcus phage B166, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

114. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_010808 (Staphylococcus phage phiMR25, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

115. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to NC_007060 (Staphylococcus phage 55, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
agcccatttaattaattcatctaatctcatttcttt	Protospacer
 *****.****************.************

116. spacer 1.7|46707|36|AP018562|CRISPRCasFinder matches to MN904510 (Staphylococcus phage vB_SauS-SAP27, complete genome) position: , mismatch: 3, identity: 0.917

tgcccacttaattaattcatctagtctcatttcttt	CRISPR spacer
cgcccatttaattaattcatctaatctcatttcttt	Protospacer
.*****.****************.************

117. spacer 9.1|2229741|34|AP018562|CRISPRCasFinder matches to MK448444 (Streptococcus satellite phage Javan343, complete genome) position: , mismatch: 7, identity: 0.794

taatatttttcttttgagttactcgaaaatttct	CRISPR spacer
taatatttttgttttgagttcctcaatcatcttt	Protospacer
********** ********* ***.*  **.*.*

118. spacer 1.4|46779|35|AP018562|CRT matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 8, identity: 0.771

ttaaagatctcaacaatagcgtcccatattttctg	CRISPR spacer
attacagtctcaccaatagcgtcccaaattttctc	Protospacer
 * * ..***** ************* *******

119. spacer 1.8|46779|36|AP018562|CRISPRCasFinder matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 9, identity: 0.75

ttaaagatctcaacaatagcgtcccatattttctgt	CRISPR spacer
attacagtctcaccaatagcgtcccaaattttctcg	Protospacer
 * * ..***** ************* *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

727255 : 735064

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD85515.1\|727255_728311_-	sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.2e-15	30.4
BBD85516.1\|728310_728979_-	DNA-binding response regulator	NA	NA	NA	NA
BBD85517.1\|728971_729445_-	DoxX family membrane protein	NA	NA	NA	NA
BBD85518.1\|729795_730236_-	hypothetical protein	NA	NA	NA	NA
BBD85519.1\|730491_731076_-	hypothetical protein	NA	NA	NA	NA
BBD85520.1\|731174_731888_-	7-carboxy-7-deazaguanine synthase	A0A1U9WRB6	Streptococcus_virus	2.9e-52	43.9
BBD85521.1\|731891_732311_-	6-carboxytetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	26.9
BBD85522.1\|732312_733002_-	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.8e-65	57.5
BBD85523.1\|733335_733929_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.4e-37	39.8
BBD85524.1\|733912_735064_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	1.7e-22	38.9

DBSCAN-SWA_2

747025 : 761459

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD85533.1\|747025_748084_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.1e-21	27.3
BBD85534.1\|748428_748971_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
BBD85535.1\|749352_750267_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.5e-08	23.4
BBD85536.1\|750856_752362_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.4e-58	32.0
BBD85537.1\|752700_753201_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	1.0e-51	71.5
BBD85538.1\|753220_754090_-	EamA/RhaT family transporter	NA	NA	NA	NA
BBD85539.1\|754992_755295_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	3.1e-40	77.8
BBD85540.1\|755266_757363_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.5
BBD85541.1\|757479_758451_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
BBD85542.1\|758786_759758_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	3.9e-140	79.6
BBD85543.1\|759744_760701_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.7e-07	62.2
BBD85544.1\|760697_761459_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.7e-16	30.1

DBSCAN-SWA_3

812834 : 831448

Staphylococcus_phage(63.16%)

coat,integrase,terminase

attL 808196:808210|attR 820796:820810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
808196:808210	attL	NA	NA	NA	NA
BBD85590.1\|812834_815207_+	ribonuclease R	Q0GXV6	Lactococcus_phage	3.5e-94	38.9
BBD85591.1\|815228_815693_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
BBD85592.1\|816255_817374_-\|integrase	site-specific integrase	H0UST3	Bacillus_phage	1.2e-76	44.6
BBD85593.1\|817354_818284_-	XRE family transcriptional regulator	Q9AZH9	Lactococcus_phage	2.2e-12	35.6
BBD85594.1\|818471_818690_+	XRE family transcriptional regulator	NA	NA	NA	NA
BBD85595.1\|818702_818840_+	pathogenicity island protein	NA	NA	NA	NA
BBD85596.1\|818841_819252_+	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	2.4e-59	85.8
BBD85597.1\|819252_819546_+	DUF1474 domain-containing protein	A0A1W6JQH0	Staphylococcus_phage	8.9e-24	61.8
BBD85598.1\|819624_820503_+	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	1.2e-161	96.5
BBD85599.1\|820519_821989_+	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	7.6e-289	99.4
820796:820810	attR	NA	NA	NA	NA
BBD85600.1\|822187_822637_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	1.9e-65	99.2
BBD85601.1\|822638_822923_+	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	1.0e-45	92.6
BBD85602.1\|822919_823561_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	4.5e-113	94.8
BBD85603.1\|824127_824352_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	6.5e-35	95.9
BBD85604.1\|824363_824942_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
BBD85605.1\|824959_825178_+	hypothetical protein	NA	NA	NA	NA
BBD85606.1\|825228_825756_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	5.4e-88	96.0
BBD85607.1\|825758_826100_+	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
BBD85608.1\|826096_826666_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	7.9e-101	97.4
BBD85609.1\|826820_827525_-	hypothetical protein	NA	NA	NA	NA
BBD85610.1\|827967_828099_+	DUF3102 domain-containing protein	NA	NA	NA	NA
BBD85611.1\|828401_828962_-	hypothetical protein	Q4ZBG8	Staphylococcus_virus	5.4e-62	68.1
BBD85612.1\|829848_830550_+	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	3.0e-49	47.4
BBD85613.1\|830716_831448_-	exotoxin	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9

DBSCAN-SWA_4

865381 : 911730

Staphylococcus_phage(68.18%)

capsid,terminase,holin,portal,plate,head,integrase,tail

attL 867203:867219|attR 875366:875382

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD85653.1\|865381_866632_+	cysteine desulfurase	Q2XUY6	environmental_halophage	4.1e-110	44.0
BBD85654.1\|866663_867086_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
867203:867219	attL	NA	NA	NA	NA
BBD85655.1\|867228_868635_+	Fe-S cluster assembly protein	NA	NA	NA	NA
BBD85656.1\|868702_869752_-\|integrase	site-specific integrase	A0A0F6N3M4	Staphylococcus_phage	7.7e-203	99.4
BBD85657.1\|869814_870744_-	DUF5067 domain-containing protein	Q4ZAM2	Staphylococcus_virus	6.5e-137	98.4
BBD85658.1\|870762_871221_-	ImmA/IrrE family metallo-endopeptidase	A0A0H4J322	Staphylococcus_phage	7.8e-67	83.7
BBD85659.1\|871232_871565_-	XRE family transcriptional regulator	A0A1J0MFC1	Staphylococcus_phage	1.6e-37	74.5
BBD85660.1\|871778_871997_+	XRE family transcriptional regulator	A0A2H4J306	uncultured_Caudovirales_phage	9.2e-34	95.8
BBD85661.1\|872011_872191_+	hypothetical protein	A0A0H3U490	Staphylococcus_phage	4.4e-26	100.0
BBD85662.1\|872180_872420_-	hypothetical protein	A0A0H3U4W2	Staphylococcus_phage	7.0e-43	100.0
BBD85663.1\|872476_873229_+	oxidoreductase	Q9G034	Staphylococcus_virus	2.8e-138	99.2
BBD85664.1\|873415_873670_-	hypothetical protein	A0A0E3T8K5	Staphylococcus_phage	2.9e-39	98.8
BBD85665.1\|873731_873953_+	hypothetical protein	E0Y3P2	Staphylococcus_virus	1.5e-31	100.0
BBD85666.1\|874011_874116_+	DUF1270 domain-containing protein	B2ZYU9	Staphylococcus_phage	1.0e-11	97.1
BBD85667.1\|874096_874435_+	putative transcriptional regulator	I1W620	Staphylococcus_phage	7.8e-56	99.1
BBD85668.1\|874582_874759_+	DUF1108 domain-containing protein	C7F7L4	Staphylococcus_phage	3.3e-26	100.0
BBD85669.1\|874807_874990_+	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	2.0e-26	100.0
BBD85670.1\|874982_875606_+	DUF1071 domain-containing protein	A0A0E3T8K8	Staphylococcus_phage	5.2e-114	99.5
875366:875382	attR	NA	NA	NA	NA
BBD85671.1\|875605_876034_+	single-stranded DNA-binding protein	B2ZYV4	Staphylococcus_phage	7.5e-56	95.1
BBD85672.1\|876047_876722_+	phi PV83 orf 19-like protein	Q4ZAK7	Staphylococcus_virus	1.5e-127	97.8
BBD85673.1\|876827_877685_-	DUF4393 domain-containing protein	Q4ZBL8	Staphylococcus_phage	9.5e-159	100.0
BBD85674.1\|877748_878534_+	alpha/beta hydrolase	A0A2I6PDW4	Staphylococcus_phage	2.9e-101	81.6
BBD85675.1\|878546_879332_+	DNA replication protein	A0A0H4J332	Staphylococcus_phage	3.2e-145	99.6
BBD85676.1\|879373_879487_+	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	1.6e-13	100.0
BBD85677.1\|879490_879721_+	DUF3269 domain-containing protein	A0A2I6PDA2	Staphylococcus_phage	4.2e-37	100.0
BBD85678.1\|879730_880138_+	RusA family crossover junction endodeoxyribonuclease	A9CR74	Staphylococcus_phage	9.3e-72	97.0
BBD85679.1\|880137_880323_+	DUF3113 domain-containing protein	W5R8N4	Staphylococcus_phage	7.0e-27	98.4
BBD85680.1\|880323_880686_+	hypothetical protein	B7T0B4	Staphylococcus_virus	1.3e-48	78.3
BBD85681.1\|880821_880935_+	phage protein	A0A1W6JPX8	Staphylococcus_phage	7.1e-14	97.3
BBD85682.1\|880943_881315_+	hypothetical protein	A0ZS31	Staphylococcus_virus	5.3e-58	91.9
BBD85683.1\|881307_881556_+	DUF1024 domain-containing protein	A7TWB0	Staphylococcus_phage	2.0e-37	98.8
BBD85684.1\|881548_882082_+	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	7.9e-95	99.4
BBD85685.1\|882118_882292_+	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	6.2e-25	98.2
BBD85686.1\|882308_882515_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	4.8e-24	83.8
BBD85687.1\|882502_882661_+	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	8.7e-18	98.0
BBD85688.1\|882661_883027_+	hypothetical protein	I1W652	Staphylococcus_phage	8.1e-59	98.3
BBD85689.1\|883027_883174_+	hypothetical protein	A0A059T5A8	Staphylococcus_phage	2.2e-15	100.0
BBD85690.1\|883188_883608_+	transcriptional regulator	I1W651	Staphylococcus_phage	5.3e-70	99.3
BBD85691.1\|883782_884235_+	transcriptional activator RinA	E0Y3R8	Staphylococcus_virus	2.6e-75	99.3
BBD85692.1\|884221_885499_+\|terminase	PBSX family phage terminase large subunit	A0EWS5	Staphylococcus_virus	1.5e-248	99.8
BBD85693.1\|885509_887045_+\|portal	phage portal protein	Q4ZDN2	Staphylococcus_virus	7.9e-289	98.6
BBD85694.1\|887051_888047_+\|head	phage head morphogenesis protein	E0Y3K7	Staphylococcus_virus	3.4e-184	100.0
BBD85695.1\|888119_888290_+	hypothetical protein	Q4ZDN0	Staphylococcus_virus	1.3e-22	98.2
BBD85696.1\|888398_889019_+	DUF4355 domain-containing protein	Q8SDU6	Staphylococcus_phage	6.4e-64	99.5
BBD85697.1\|889032_890007_+\|capsid	phage major capsid protein	E0Y3L0	Staphylococcus_virus	6.3e-183	99.7
BBD85698.1\|890028_890316_+	hypothetical protein	S4V6D9	Staphylococcus_phage	1.4e-45	98.9
BBD85699.1\|890324_890657_+\|head,tail	phage head-tail adapter protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
BBD85700.1\|890955_891303_+	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	6.5e-58	96.5
BBD85701.1\|891314_891698_+	hypothetical protein	E0Y3L5	Staphylococcus_virus	1.3e-67	99.2
BBD85702.1\|891716_892298_+\|tail	TP901-1 family phage major tail protein	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
BBD85703.1\|892360_892726_+	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
BBD85704.1\|892755_893100_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	7.2e-57	99.1
BBD85705.1\|893116_896584_+	hypothetical protein	E0Y3L9	Staphylococcus_virus	4.8e-233	97.0
BBD85706.1\|896596_897544_+\|tail	phage tail family protein	E0Y3M0	Staphylococcus_virus	8.0e-183	99.7
BBD85707.1\|897552_899454_+	peptidase	I1W634	Staphylococcus_phage	0.0e+00	99.8
BBD85708.1\|899468_901379_+	hypothetical protein	Q4ZDD6	Staphylococcus_virus	0.0e+00	98.7
BBD85709.1\|901378_903202_+\|plate	phage baseplate upper protein	Q4ZDD5	Staphylococcus_virus	1.4e-279	94.2
BBD85710.1\|903192_903579_+	DUF2977 domain-containing protein	A9CRC6	Staphylococcus_phage	5.8e-55	100.0
BBD85711.1\|903579_903756_+	hypothetical protein	A0A059T7K6	Staphylococcus_phage	1.0e-27	98.3
BBD85712.1\|903796_904096_+	DUF2951 domain-containing protein	A0EWU6	Staphylococcus_virus	2.2e-46	99.0
BBD85713.1\|904232_906131_+	CHAP domain-containing protein	A0A0F6N4K6	Staphylococcus_phage	0.0e+00	98.1
BBD85714.1\|906524_908147_+	DUF2479 domain-containing protein	Q4ZA81	Staphylococcus_virus	6.6e-278	95.6
BBD85715.1\|908197_908473_+\|holin	phage holin	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
BBD85716.1\|908600_909872_+	amidase	A0A2H4PQS4	Staphylococcus_phage	6.8e-254	99.5
BBD85717.1\|910040_910169_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
BBD85718.1\|910239_910350_+	hypothetical protein	W5R8J7	Staphylococcus_phage	3.8e-12	97.2
BBD85719.1\|910336_910537_+	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
BBD85720.1\|911172_911730_+	hypothetical protein	W5R8Q1	Staphylococcus_phage	2.8e-103	99.5

DBSCAN-SWA_5

995305 : 1051030

Streptococcus_phage(28.57%)

bacteriocin,holin,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD85798.1\|995305_996295_-\|tRNA	tryptophan-tRNA ligase	NA	NA	NA	NA
BBD85799.1\|996588_996984_+	transcriptional regulator Spx	NA	NA	NA	NA
BBD85800.1\|997355_998075_+	adaptor protein	NA	NA	NA	NA
BBD85801.1\|998209_999196_+	competence protein	NA	NA	NA	NA
BBD85802.1\|999243_1001052_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	4.2e-47	25.2
BBD85803.1\|1001329_1001437_+	hypothetical protein	NA	NA	NA	NA
BBD85804.1\|1001622_1002429_-	DsbA family protein	NA	NA	NA	NA
BBD85805.1\|1002451_1002829_-	globin	NA	NA	NA	NA
BBD85806.1\|1002938_1003532_-	CYTH domain-containing protein	NA	NA	NA	NA
BBD85807.1\|1003715_1004063_+	hypothetical protein	NA	NA	NA	NA
BBD85808.1\|1004079_1004715_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
BBD85809.1\|1004731_1005541_+	NAD kinase	NA	NA	NA	NA
BBD85810.1\|1005537_1006392_+	RluA family pseudouridine synthase	NA	NA	NA	NA
BBD85811.1\|1006388_1007798_+	magnesium transporter	NA	NA	NA	NA
BBD85812.1\|1007807_1009652_+	sodium:proton antiporter	NA	NA	NA	NA
BBD85813.1\|1009888_1010659_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
BBD85814.1\|1010799_1011816_-	AI-2E family transporter	NA	NA	NA	NA
BBD85815.1\|1012261_1013830_+	alanine:cation symporter family protein	NA	NA	NA	NA
BBD85816.1\|1013976_1014735_+	esterase family protein	NA	NA	NA	NA
BBD85817.1\|1014941_1015451_+	hypothetical protein	NA	NA	NA	NA
BBD85818.1\|1015601_1016675_-	glycolipid permease	NA	NA	NA	NA
BBD85819.1\|1016769_1017945_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
BBD85820.1\|1018378_1019863_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L- lysine ligase	NA	NA	NA	NA
BBD85821.1\|1019924_1020110_+	hypothetical protein	NA	NA	NA	NA
BBD85822.1\|1020109_1021672_+	peptide chain release factor 3	A0A1B0RXH7	Streptococcus_phage	1.1e-35	28.6
BBD85823.1\|1021980_1022784_+	membrane protein	S5MAL1	Bacillus_phage	7.8e-30	39.5
BBD85824.1\|1023001_1025323_+	PDZ domain-containing protein	W5SAB9	Pithovirus	1.4e-10	26.8
BBD85825.1\|1025389_1026697_+	Ktr system potassium uptake protein D	NA	NA	NA	NA
BBD85826.1\|1026835_1028344_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
BBD85827.1\|1028835_1029405_-	competence protein	NA	NA	NA	NA
BBD85828.1\|1029614_1029833_+	IDEAL domain-containing protein	NA	NA	NA	NA
BBD85829.1\|1029913_1030900_-	lipoate-protein ligase A	NA	NA	NA	NA
BBD85830.1\|1031094_1031271_+	DUF2187 domain-containing protein	NA	NA	NA	NA
BBD85831.1\|1031357_1031888_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
BBD85832.1\|1032156_1032264_+\|holin	putative holin-like toxin	NA	NA	NA	NA
BBD85833.1\|1033223_1035188_+	DUF1430 domain-containing protein	NA	NA	NA	NA
BBD85834.1\|1035190_1035511_+	hypothetical protein	NA	NA	NA	NA
BBD85835.1\|1035507_1036149_+\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.9e-20	33.2
BBD85836.1\|1036236_1036425_-	hypothetical protein	NA	NA	NA	NA
BBD85837.1\|1036811_1037099_+	hypothetical protein	NA	NA	NA	NA
BBD85838.1\|1037101_1038586_+	glycosyl transferase family 1	NA	NA	NA	NA
BBD85839.1\|1038946_1039303_-	DoxX family protein	NA	NA	NA	NA
BBD85840.1\|1039766_1040726_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
BBD85841.1\|1040774_1040891_-	hypothetical protein	NA	NA	NA	NA
BBD85842.1\|1040971_1041184_-	NINE protein	A0A060AN66	Enterococcus_phage	1.9e-07	49.1
BBD85843.1\|1041342_1041900_+	N-acetyltransferase	NA	NA	NA	NA
BBD85844.1\|1041951_1042890_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
BBD85845.1\|1043062_1044433_+	isochorismate synthase	NA	NA	NA	NA
BBD85846.1\|1044419_1046093_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
BBD85847.1\|1046079_1046883_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
BBD85848.1\|1046875_1047697_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
BBD85849.1\|1048331_1048661_-\|protease	cysteine protease	NA	NA	NA	NA
BBD85850.1\|1048698_1049829_-\|protease	cysteine protease	NA	NA	NA	NA
BBD85851.1\|1049968_1051030_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	2.9e-16	31.4

DBSCAN-SWA_6

1070273 : 1078743

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD85866.1\|1070273_1070756_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.7e-19	42.0
BBD85867.1\|1070742_1071867_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
BBD85868.1\|1071870_1072575_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	4.7e-47	42.1
BBD85869.1\|1072574_1072835_+	phosphoribosylformylglycinamidine synthase subunit	NA	NA	NA	NA
BBD85870.1\|1072884_1073508_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
BBD85871.1\|1073500_1075690_+	phosphoribosylformylglycinamidine synthase subunit	A6N228	Microbacterium_phage	5.5e-142	40.1
BBD85872.1\|1075668_1077153_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-43	31.3
BBD85873.1\|1077145_1078174_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.1e-64	42.9
BBD85874.1\|1078176_1078743_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.6e-29	40.1

DBSCAN-SWA_7

1822394 : 1870394

Staphylococcus_phage(91.67%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD86540.1\|1822394_1828919_-	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	7.5e-272	84.0
BBD86541.1\|1829295_1829607_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	6.7e-46	89.3
BBD86542.1\|1829628_1832046_-\|tRNA	leucine-tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	96.5
BBD86543.1\|1832333_1833422_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	4.0e-194	97.0
BBD86544.1\|1833622_1834576_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.0e-76	96.6
BBD86545.1\|1834572_1835136_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	6.4e-87	84.0
BBD86546.1\|1835244_1835673_-	MarR family transcriptional regulator	NA	NA	NA	NA
BBD86547.1\|1836248_1837076_-	alpha/beta hydrolase	NA	NA	NA	NA
BBD86548.1\|1837308_1838310_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.1e-177	94.6
BBD86549.1\|1838450_1838912_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.1e-67	97.4
BBD86550.1\|1838924_1840106_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.1e-212	91.9
BBD86551.1\|1840116_1840749_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.3e-99	88.6
BBD86552.1\|1840755_1841787_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	2.1e-176	87.8
BBD86553.1\|1842276_1843773_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.4e-24	93.8
BBD86554.1\|1844604_1845894_+	arsenical efflux pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	3.0e-196	85.8
BBD86555.1\|1846453_1847344_-	autolysin	A0A1W6JQU5	Staphylococcus_phage	2.3e-38	41.4
BBD86556.1\|1847588_1847813_-	hypothetical protein	NA	NA	NA	NA
BBD86557.1\|1847937_1848483_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.5e-61	73.5
BBD86558.1\|1848502_1848940_+	competence protein	NA	NA	NA	NA
BBD86559.1\|1848932_1849376_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.2e-42	68.0
BBD86560.1\|1849661_1850300_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
BBD86561.1\|1850481_1851102_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
BBD86562.1\|1851383_1852097_-	transaldolase	M1PR54	Cyanophage	1.9e-19	35.3
BBD86563.1\|1852507_1852657_+	hypothetical protein	NA	NA	NA	NA
BBD86564.1\|1852880_1853255_+	fluoride efflux transporter	A0A2H4PQR0	Staphylococcus_phage	9.5e-47	77.7
BBD86565.1\|1853272_1853605_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	5.4e-09	39.1
BBD86566.1\|1853975_1854809_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.7e-141	87.7
BBD86567.1\|1855123_1856032_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	8.3e-137	98.0
BBD86568.1\|1856156_1857350_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-217	99.5
BBD86569.1\|1857720_1859313_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.9e-312	99.1
BBD86570.1\|1859492_1860251_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.2e-126	88.6
BBD86571.1\|1860255_1860735_-	nucleoside triphosphatase	A0A2H4PQM4	Staphylococcus_phage	2.9e-80	92.5
BBD86572.1\|1860780_1861053_+	membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	1.9e-44	97.6
BBD86573.1\|1861049_1862051_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-162	85.6
BBD86574.1\|1862055_1863534_-	o-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-262	90.7
BBD86575.1\|1863696_1864206_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	1.5e-55	69.0
BBD86576.1\|1864486_1865077_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.9e-12	80.0
BBD86577.1\|1865159_1866155_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	4.8e-69	93.5
BBD86578.1\|1866230_1866857_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	1.6e-75	80.3
BBD86579.1\|1866883_1867627_+	exotoxin	A0EX09	Staphylococcus_phage	9.2e-25	33.5
BBD86580.1\|1867695_1868406_+	hypothetical protein	A0A097PAT7	Streptococcus_pyogenes_phage	1.8e-49	48.5
BBD86581.1\|1868535_1869117_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	7.6e-75	93.2
BBD86582.1\|1869289_1869715_-	DUF1433 domain-containing protein	NA	NA	NA	NA
BBD86583.1\|1870157_1870394_-\|transposase	IS3 family transposase	A0A0C5AJ30	Paenibacillus_phage	1.5e-18	64.1

DBSCAN-SWA_8

1873940 : 1889912

Staphylococcus_phage(100.0%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD86589.1\|1873940_1875179_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	3.9e-44	33.7
BBD86590.1\|1875171_1876728_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.6e-284	96.9
BBD86591.1\|1877196_1877766_+	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	1.4e-49	60.0
BBD86592.1\|1877821_1877947_-	hypothetical protein	NA	NA	NA	NA
BBD86593.1\|1878179_1878878_-	BsaG protein	A0A2H4PQH0	Staphylococcus_phage	1.6e-111	94.4
BBD86594.1\|1878874_1879636_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	7.5e-131	99.6
BBD86595.1\|1879635_1880325_-	lantibiotic ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-122	99.6
BBD86596.1\|1880346_1881657_-	peptidase S8	A0A2H4PQH1	Staphylococcus_phage	2.7e-237	94.7
BBD86597.1\|1881729_1882263_-	enterotoxin	A0A2H4PQG9	Staphylococcus_phage	1.0e-94	98.8
BBD86598.1\|1882263_1883508_-	lanthionine synthetase	A0A2H4PQH9	Staphylococcus_phage	3.4e-213	88.9
BBD86599.1\|1883500_1886461_-\|bacteriocin	bacteriocin biosynthesis protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	90.1
BBD86600.1\|1887991_1888975_-	beta-channel forming cytolysin	A0A2H4PQH7	Staphylococcus_phage	1.0e-164	87.8
BBD86601.1\|1888976_1889912_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	9.7e-165	92.8

Anti-CRISPR protein detection

Acr_ID: AP018562.1|BBD85807.1|1003715_1004063_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

AP018562.1|BBD85807.1|1003715_1004063_+|hypothetical-protein

1003715_1004063_+

115 aa aa

995305-1051030

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
AP018562_5	Orphan	5.1\|1047964\|29\|AP018562\|CRISPRCasFinder	1047964-1047992	29	1047853-1047881	2

1. spacer 5.1|1047964|29|AP018562|CRISPRCasFinder matches to AP018562 position: 1047853-1047881, mismatch: 2

gaaattggaaccctaaattctacaggcaa	CRISPR spacer
gaaattggaacccaaaattctacagacaa	Protospacer
************* ***********.***

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP018562

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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