CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP034590	Escherichia coli strain L37 plasmid pL37-2, complete sequence	0 crisprs	csa3,RT	2
CP034589	Escherichia coli strain L37 chromosome, complete genome	0 crisprs	DEDDh,DinG,cas3,c2c9_V-U4,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,PD-DExK	8
CP034592	Escherichia coli strain L37 plasmid pL37-4, complete sequence	0 crisprs	NA	0
CP034591	Escherichia coli strain L37 plasmid pL37-3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17278 : 92020

Escherichia_phage(52.5%)

integrase,transposase

attL 54876:54906|attR 94541:94571

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ82371.1\|17278_20317_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.7e-295	53.5
AZQ82372.1\|21016_22150_-	permease	NA	NA	NA	NA
AZQ82373.1\|22255_22579_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AZQ82374.1\|25027_25270_-	mat domain protein	Q71TG2	Escherichia_phage	1.2e-29	98.6
AZQ82375.1\|25458_26019_-	recombinase	Q71TG3	Escherichia_phage	1.7e-100	97.8
AZQ82376.1\|26266_26578_-	lysogeny establishment protein	Q5XLQ4	Enterobacteria_phage	2.8e-44	93.2
AZQ82377.1\|26628_27660_-	recombinase	Q71TG5	Escherichia_phage	8.4e-194	99.4
AZQ82378.1\|27667_27889_-	creatininase	Q5QBN7	Enterobacteria_phage	4.5e-36	100.0
AZQ82450.1\|28300_28393_+	peptidase	Q38401	Escherichia_phage	2.3e-07	100.0
AZQ82379.1\|28525_29506_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.3e-183	98.5
AZQ82380.1\|29963_30494_-	4Fe-4S dicluster domain-containing protein	A0A077SLP0	Escherichia_phage	8.6e-102	100.0
AZQ82381.1\|30490_31087_-	molecular chaperone	A0A077SLS7	Escherichia_phage	6.5e-114	99.5
AZQ82382.1\|31141_31918_-	dimethyl sulfoxide reductase	A0A077SK59	Escherichia_phage	5.8e-131	100.0
AZQ82383.1\|31910_32537_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.9e-128	100.0
AZQ82451.1\|32550_34953_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	0.0e+00	83.8
AZQ82384.1\|36082_36178_+	peptidase	Q38402	Escherichia_phage	2.8e-11	100.0
AZQ82385.1\|36143_36353_+	c1 repressor inactivator	A0A077SK26	Escherichia_phage	1.8e-31	100.0
AZQ82386.1\|36463_37315_+	hypothetical protein	A0A077SLM8	Escherichia_phage	1.2e-158	100.0
AZQ82387.1\|38968_39148_-	PdcA protein	Q71TH5	Escherichia_phage	6.0e-23	98.3
AZQ82388.1\|39152_39533_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
AZQ82389.1\|39532_39754_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AZQ82390.1\|39936_41493_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.1e-104	42.9
AZQ82391.1\|41489_42728_+	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	3.5e-37	52.5
AZQ82392.1\|42849_45966_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	1.1e-26	24.3
AZQ82393.1\|46232_46739_-	3'-phosphatase	A0A1B0VAK0	Salmonella_phage	1.4e-93	99.4
AZQ82394.1\|46811_48074_-	hypothetical protein	Q71TI8	Escherichia_phage	7.0e-235	99.8
AZQ82395.1\|48075_48294_-	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
AZQ82396.1\|48375_49077_-	hypothetical protein	Q1MVG6	Enterobacteria_phage	4.2e-144	100.0
AZQ82397.1\|49073_49751_-	serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
AZQ82398.1\|49747_50374_-	norphogenetic protein	Q1MVG8	Enterobacteria_phage	1.0e-122	99.5
AZQ82399.1\|52606_52936_+	hypothetical protein	NA	NA	NA	NA
AZQ82400.1\|53004_53145_+	transcriptional regulator	NA	NA	NA	NA
54876:54906	attL	NA	NA	NA	NA
AZQ82401.1\|56657_57050_+	cysteine hydrolase	NA	NA	NA	NA
AZQ82402.1\|57187_58072_+	EamA family transporter	NA	NA	NA	NA
AZQ82403.1\|58103_59303_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AZQ82404.1\|59381_60035_+	TetR family transcriptional regulator	NA	NA	NA	NA
AZQ82452.1\|60066_60324_-	relaxase	NA	NA	NA	NA
AZQ82405.1\|62755_63346_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
AZQ82406.1\|63482_64055_+	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
AZQ82453.1\|64091_65483_+\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA
AZQ82407.1\|66262_66919_-	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
AZQ82408.1\|68371_71371_-\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
AZQ82409.1\|72657_73518_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AZQ82410.1\|75044_75896_+	replication protein C	NA	NA	NA	NA
AZQ82411.1\|76430_77315_+	DUF3363 domain-containing protein	NA	NA	NA	NA
AZQ82412.1\|77531_78746_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
AZQ82413.1\|79129_79834_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AZQ82414.1\|79824_80004_+	replication initiator protein	NA	NA	NA	NA
AZQ82415.1\|80149_80707_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AZQ82416.1\|80889_81750_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AZQ82417.1\|81980_82817_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AZQ82418.1\|82816_83620_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AZQ82419.1\|83680_84496_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AZQ82420.1\|84825_85002_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
AZQ82421.1\|85183_86188_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AZQ82422.1\|86266_89233_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
AZQ82423.1\|89603_90308_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AZQ82424.1\|90377_90851_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
AZQ82425.1\|91006_92020_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
94541:94571	attR	NA	NA	NA	NA

DBSCAN-SWA_2

117679 : 130538

Escherichia_phage(58.33%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ82436.1\|117679_117835_+	type I toxin-antitoxin system Hok family toxin	A0A1I9LJU7	Stx_converting_phage	4.0e-15	90.2
AZQ82437.1\|119302_119812_-\|plate	baseplate protein	Q1MVJ9	Enterobacteria_phage	6.6e-91	99.4
AZQ82438.1\|119823_120405_-	hypothetical protein	Q71TM4	Escherichia_phage	9.5e-102	98.4
AZQ82439.1\|120440_121256_-	hypothetical protein	A0A1B0V835	Salmonella_phage	3.5e-110	98.2
AZQ82440.1\|121265_122855_-	hypothetical protein	A0A1B0V7E4	Salmonella_phage	3.4e-303	98.5
AZQ82441.1\|122914_124621_-	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	99.8
AZQ82442.1\|124845_125847_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.7e-178	100.0
AZQ82443.1\|125863_127060_-	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
AZQ82444.1\|127228_128038_-	GIY-YIG nuclease family protein	A0A077SK46	Escherichia_phage	7.1e-156	97.8
AZQ82455.1\|128330_129215_-	RepB family plasmid replication initiator protein	A0A077SLP3	Escherichia_phage	2.1e-161	100.0
AZQ82445.1\|129550_129943_-	hypothetical protein	A0A077SLJ1	Escherichia_phage	7.6e-71	97.7
AZQ82446.1\|130118_130538_-	ppfA	A0A1B0VCB0	Salmonella_phage	2.7e-42	83.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP034589

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1982094 : 1988403

Enterobacteria_phage(33.33%)

transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ79953.1\|1982094_1982794_+\|transposase	IS1 family transposase	A0A077SLN4	Escherichia_phage	4.0e-131	99.1
AZQ79954.1\|1982804_1983230_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	3.0e-65	94.9
AZQ82275.1\|1983367_1984825_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
AZQ79955.1\|1984962_1985754_+	transcriptional regulator	R4TG31	Halovirus	2.8e-48	40.2
AZQ79956.1\|1985746_1985965_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	3.6e-14	81.4
AZQ79957.1\|1987824_1987977_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.4e-20	96.0
AZQ79958.1\|1988079_1988403_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	3.0e-41	65.4

DBSCAN-SWA_2

2378223 : 2437774

Enterobacteria_phage(50.0%)

protease,tail,portal,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ80288.1\|2378223_2379684_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.1e-41	29.4
AZQ80289.1\|2379772_2381056_-	MFS transporter	NA	NA	NA	NA
AZQ80290.1\|2381659_2381773_+	hypothetical protein	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
AZQ80291.1\|2381841_2382075_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
AZQ80292.1\|2382391_2382982_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
AZQ82293.1\|2383079_2383199_-	hypothetical protein	K7PMH7	Enterobacteria_phage	3.1e-12	84.6
AZQ80293.1\|2383253_2386559_-\|tail	phage tail protein	K7PGT9	Enterobacteria_phage	5.0e-280	69.0
AZQ80294.1\|2386623_2387223_-	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	1.1e-108	97.5
AZQ80295.1\|2387293_2390707_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	98.5
AZQ80296.1\|2390766_2391414_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.2e-110	96.7
AZQ80297.1\|2392060_2392759_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.3e-133	99.1
AZQ80298.1\|2392768_2393098_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
AZQ80299.1\|2393097_2396163_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.3
AZQ80300.1\|2396185_2396464_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.1e-45	100.0
AZQ82294.1\|2396472_2396859_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.1e-61	96.1
AZQ80301.1\|2396919_2397663_-\|tail	phage tail protein	K7PGT7	Enterobacteria_phage	2.0e-133	99.2
AZQ82295.1\|2397673_2398075_-\|tail	phage tail protein	A5LH34	Enterobacteria_phage	1.9e-72	99.2
AZQ80302.1\|2398071_2398650_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.0e-100	99.0
AZQ80303.1\|2398661_2398937_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
AZQ80304.1\|2398929_2399253_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	2.5e-51	99.1
AZQ80305.1\|2401311_2402820_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.6e-289	100.0
AZQ80306.1\|2402819_2403032_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AZQ80307.1\|2403028_2405128_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	97.1
AZQ82296.1\|2405136_2405301_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.2e-22	98.1
AZQ82297.1\|2406950_2407124_-	protein GnsB	NA	NA	NA	NA
AZQ82298.1\|2407296_2407452_-	hypothetical protein	NA	NA	NA	NA
AZQ82299.1\|2407599_2407788_-	cold-shock protein	NA	NA	NA	NA
AZQ80308.1\|2407798_2408011_-	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AZQ80309.1\|2408374_2408872_-	DUF2514 domain-containing protein	NA	NA	NA	NA
AZQ80310.1\|2408868_2409402_-	lysozyme	K7PLY1	Enterobacteria_phage	2.6e-98	94.9
AZQ80311.1\|2409529_2409826_+	hypothetical protein	NA	NA	NA	NA
AZQ80312.1\|2409850_2410069_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.6e-17	63.8
AZQ80313.1\|2410073_2410289_-\|holin	holin	A5LH82	Enterobacteria_phage	2.9e-32	94.4
AZQ80314.1\|2410479_2411193_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZQ80315.1\|2411599_2412559_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
AZQ80316.1\|2412751_2413276_+	outer membrane lipoprotein Blc	A0A1W6JNX6	Morganella_phage	1.0e-46	52.9
AZQ80317.1\|2414124_2416062_+	exonuclease	A0A192Y6E0	Salmonella_phage	1.5e-58	56.1
AZQ82300.1\|2416149_2416386_+	DNA-binding protein	S4TND0	Salmonella_phage	6.1e-15	50.7
AZQ80318.1\|2416420_2417701_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	8.6e-156	62.3
AZQ80319.1\|2417720_2417831_-	transporter	NA	NA	NA	NA
AZQ80320.1\|2417888_2418908_-	starvation-sensing protein RspB	E3SJ82	Synechococcus_phage	4.3e-17	26.2
AZQ80321.1\|2418919_2420134_-	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	1.4e-46	29.0
AZQ80322.1\|2420339_2420666_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AZQ80323.1\|2420800_2421142_+	DUF1283 family protein	NA	NA	NA	NA
AZQ80324.1\|2421176_2421737_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
AZQ80325.1\|2421739_2422450_-	YnfC family lipoprotein	NA	NA	NA	NA
AZQ80326.1\|2422557_2422863_+	DUF1161 domain-containing protein	NA	NA	NA	NA
AZQ80327.1\|2423061_2425488_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.2e-214	49.2
AZQ82301.1\|2425548_2427972_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.7e-208	48.6
AZQ80328.1\|2427982_2428600_+	dimethylsulfoxide reductase	A0A077SL61	Escherichia_phage	9.5e-76	59.6
AZQ80329.1\|2428601_2429456_+	dimethylsulfoxide reductase	NA	NA	NA	NA
AZQ80330.1\|2429498_2430113_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
AZQ80331.1\|2430271_2431564_+	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
AZQ80332.1\|2431516_2432212_-	dethiobiotin synthase	NA	NA	NA	NA
AZQ80333.1\|2432336_2433557_-	protein mlc	NA	NA	NA	NA
AZQ80334.1\|2433691_2434585_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZQ80335.1\|2434691_2435945_+	MFS transporter	NA	NA	NA	NA
AZQ80336.1\|2436341_2436677_+	acid shock protein	NA	NA	NA	NA
AZQ82302.1\|2436769_2436853_+	hypothetical protein	NA	NA	NA	NA
AZQ80337.1\|2436952_2437774_+\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

2755471 : 2764608

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ80631.1\|2755471_2756389_-\|transposase	IS5-like element ISEc35 family transposase	A0A1V0E8E1	Vibrio_phage	3.3e-101	59.5
AZQ80632.1\|2756612_2757536_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	2.2e-177	100.0
AZQ80633.1\|2758071_2759136_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-104	55.0
AZQ80634.1\|2759150_2760020_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.2e-112	67.4
AZQ80635.1\|2760051_2760942_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.8e-28	33.6
AZQ80636.1\|2760956_2761511_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.0
AZQ80637.1\|2761602_2762433_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AZQ80638.1\|2762462_2763296_+	ABC transporter permease	NA	NA	NA	NA
AZQ80639.1\|2763285_2764608_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-12	25.6

DBSCAN-SWA_4

2807292 : 2852849

Escherichia_phage(13.33%)

integrase,plate,transposase,tail

attL 2806751:2806765|attR 2819204:2819218

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2806751:2806765	attL	NA	NA	NA	NA
AZQ80679.1\|2807292_2807607_+\|integrase	integrase	A0A286S1S8	Klebsiella_phage	6.9e-06	61.8
AZQ80680.1\|2807526_2807841_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
AZQ80681.1\|2808055_2809714_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
AZQ80682.1\|2809706_2810702_+	flagellar motor switch protein FliG	NA	NA	NA	NA
AZQ80683.1\|2810694_2811381_+	flagellar assembly protein FliH	NA	NA	NA	NA
AZQ80684.1\|2811380_2812754_+	flagellum-specific ATP synthase	NA	NA	NA	NA
AZQ80685.1\|2812772_2813216_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
AZQ80686.1\|2813212_2814340_+	flagellar hook length control protein FliK	NA	NA	NA	NA
AZQ80687.1\|2814444_2814909_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
AZQ80688.1\|2814913_2815918_+	flagellar motor switch protein FliM	NA	NA	NA	NA
AZQ80689.1\|2815914_2816328_+	flagellar motor switch protein FliN	NA	NA	NA	NA
AZQ82318.1\|2816330_2816696_+	flagellar protein FliO	NA	NA	NA	NA
AZQ80690.1\|2816695_2817433_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA
AZQ80691.1\|2817442_2817712_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
AZQ80692.1\|2818386_2819085_+\|transposase	IS1-like element IS1A family transposase	A0A077SLN4	Escherichia_phage	6.2e-132	99.1
AZQ80693.1\|2819573_2820197_+	transcriptional regulator RcsA	NA	NA	NA	NA
2819204:2819218	attR	NA	NA	NA	NA
AZQ80694.1\|2820240_2820483_-	protein DsrB	NA	NA	NA	NA
AZQ80695.1\|2820415_2820604_-	hypothetical protein	NA	NA	NA	NA
AZQ80696.1\|2820591_2820819_+	stress-induced protein YodD	NA	NA	NA	NA
AZQ80697.1\|2821116_2821932_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
AZQ80698.1\|2821928_2823623_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
AZQ80699.1\|2823793_2823976_-	DUF2158 domain-containing protein	NA	NA	NA	NA
AZQ80700.1\|2824054_2825008_-	DUF808 domain-containing protein	NA	NA	NA	NA
AZQ80701.1\|2825145_2826066_+	drug/metabolite exporter YedA	NA	NA	NA	NA
AZQ80702.1\|2826054_2826525_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	4.4e-33	47.6
AZQ80703.1\|2826505_2827924_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-101	54.8
AZQ80704.1\|2827990_2828686_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.0
AZQ80705.1\|2828725_2829091_-	permease	NA	NA	NA	NA
AZQ80706.1\|2829656_2830730_+	porin	Q1MVN1	Enterobacteria_phage	8.1e-99	51.6
AZQ80707.1\|2831322_2832174_+	Molecular chaperone Hsp31 and glyoxalase 3	NA	NA	NA	NA
AZQ80708.1\|2832281_2833640_-	HAMP domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	5.1e-05	20.2
AZQ82319.1\|2833639_2834311_-	DNA-binding response regulator HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
AZQ80709.1\|2834443_2834857_+	hydroxyisourate hydrolase	NA	NA	NA	NA
AZQ80710.1\|2834965_2835970_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
AZQ80711.1\|2835970_2836606_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
AZQ80712.1\|2836841_2837513_+	metal-binding protein ZinT	NA	NA	NA	NA
AZQ80713.1\|2837855_2838386_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
AZQ80714.1\|2839288_2839615_-	hypothetical protein	K7PGV5	Enterobacterial_phage	4.7e-26	53.9
AZQ80715.1\|2839617_2839857_-	DNA polymerase V	I6PD82	Cronobacter_phage	1.2e-21	55.7
AZQ80716.1\|2839955_2841176_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
AZQ80717.1\|2841755_2842637_+	hypothetical protein	NA	NA	NA	NA
AZQ80718.1\|2842648_2842966_-	hypothetical protein	NA	NA	NA	NA
AZQ82320.1\|2843335_2843575_-	hypothetical protein	NA	NA	NA	NA
AZQ80719.1\|2847000_2848329_+	hypothetical protein	NA	NA	NA	NA
AZQ80720.1\|2848927_2849605_-	DUF2313 domain-containing protein	NA	NA	NA	NA
AZQ80721.1\|2849601_2850750_-\|plate	baseplate J/gp47 family protein	R9TN81	Rhizobium_phage	2.4e-16	25.6
AZQ80722.1\|2850739_2851189_-	hypothetical protein	A0A0C4UR04	Shigella_phage	7.2e-17	41.4
AZQ80723.1\|2851185_2851767_-\|plate	baseplate assembly protein	NA	NA	NA	NA
AZQ80724.1\|2851763_2852849_-\|tail	phage tail protein	Q8SBG7	Shigella_phage	6.2e-38	30.2

DBSCAN-SWA_5

2856287 : 2884729

Salmonella_phage(25.93%)

integrase,tail,capsid,portal,holin,head,terminase

attL 2869081:2869095|attR 2887579:2887593

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ80728.1\|2856287_2856566_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AZQ80729.1\|2856567_2856939_-\|tail	phage tail protein	NA	NA	NA	NA
AZQ80730.1\|2856942_2858454_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	4.1e-104	44.4
AZQ80731.1\|2858450_2858636_-	DUF2635 domain-containing protein	NA	NA	NA	NA
AZQ80732.1\|2858638_2859184_-	ATP-binding protein	NA	NA	NA	NA
AZQ80733.1\|2859180_2859540_-	hypothetical protein	NA	NA	NA	NA
AZQ80734.1\|2859544_2859955_-	hypothetical protein	NA	NA	NA	NA
AZQ80735.1\|2859926_2860976_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	7.3e-52	33.7
AZQ80736.1\|2861074_2861482_-\|head	head decoration protein	NA	NA	NA	NA
AZQ80737.1\|2861481_2862072_-	hypothetical protein	NA	NA	NA	NA
AZQ80738.1\|2862073_2862940_-	S49 family peptidase	A0A0B4SK12	Proteus_phage	1.1e-48	43.2
AZQ80739.1\|2862936_2864571_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	1.5e-91	36.0
AZQ80740.1\|2864570_2864834_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AZQ80741.1\|2864842_2866969_-\|terminase	terminase	A0A2K9V3X4	Faecalibacterium_phage	1.8e-97	35.7
AZQ80742.1\|2866910_2867474_-	hypothetical protein	NA	NA	NA	NA
AZQ80743.1\|2867713_2868352_-	hypothetical protein	NA	NA	NA	NA
AZQ80744.1\|2868468_2868975_-	hypothetical protein	NA	NA	NA	NA
2869081:2869095	attL	NA	NA	NA	NA
AZQ80745.1\|2869477_2869666_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.5e-24	100.0
AZQ80746.1\|2869616_2869892_-	hypothetical protein	G8C7W1	Escherichia_phage	1.5e-12	47.2
AZQ80747.1\|2869888_2870236_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.3e-39	79.1
AZQ80748.1\|2870232_2870772_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	1.3e-100	97.8
AZQ82321.1\|2870768_2871068_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
AZQ80749.1\|2872803_2873382_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-49	56.1
AZQ80750.1\|2873395_2874376_-	DUF968 domain-containing protein	S5FV02	Shigella_phage	2.2e-135	67.5
AZQ80751.1\|2874388_2874766_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.9e-47	72.8
AZQ80752.1\|2874775_2875585_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	4.5e-110	69.7
AZQ80753.1\|2875581_2876496_-	transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	56.3
AZQ80754.1\|2876452_2876665_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.2e-16	72.7
AZQ80755.1\|2876902_2877364_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
AZQ80756.1\|2877398_2877641_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
AZQ80757.1\|2877738_2878434_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.5e-87	71.3
AZQ80758.1\|2878734_2879094_+	hypothetical protein	NA	NA	NA	NA
AZQ80759.1\|2879302_2880220_+	hypothetical protein	A0A1W6JP69	Morganella_phage	5.8e-45	35.9
AZQ80760.1\|2880309_2880609_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.9e-13	48.6
AZQ80761.1\|2880608_2881397_+	hypothetical protein	A4JX52	Burkholderia_virus	3.8e-61	50.2
AZQ80762.1\|2881393_2882470_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	3.3e-148	73.5
AZQ80763.1\|2882462_2883206_+	DUF550 domain-containing protein	A0A193GZ33	Enterobacter_phage	2.2e-42	61.8
AZQ80764.1\|2883202_2883481_+	hypothetical protein	K7PKM4	Enterobacterial_phage	2.3e-13	46.1
AZQ80765.1\|2883513_2883741_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.8e-30	78.4
AZQ80766.1\|2883742_2884729_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	6.6e-172	85.3
2887579:2887593	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2968736 : 2975431

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ80839.1\|2968736_2969129_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	4.2e-29	50.0
AZQ80840.1\|2969131_2969689_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.6e-52	58.1
AZQ80841.1\|2969690_2970569_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.5e-106	64.1
AZQ80842.1\|2970619_2971519_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-29	34.4
AZQ80843.1\|2971518_2972604_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.8e-99	53.1
AZQ80844.1\|2972999_2973893_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	5.6e-45	41.3
AZQ80845.1\|2974039_2975431_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.4e-18	30.7

DBSCAN-SWA_7

3066089 : 3075530

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ80911.1\|3066089_3067226_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	8.5e-163	97.7
AZQ80912.1\|3067222_3069223_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
AZQ80913.1\|3069347_3069809_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AZQ80914.1\|3069848_3070319_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
AZQ80915.1\|3070365_3071085_-	two-component system response regulator YehT	NA	NA	NA	NA
AZQ80916.1\|3071081_3072767_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AZQ80917.1\|3072988_3073720_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AZQ80918.1\|3073779_3073887_+	protein YohO	NA	NA	NA	NA
AZQ80919.1\|3073867_3074599_-	ABC transporter permease	NA	NA	NA	NA
AZQ80920.1\|3074603_3075530_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	5.7e-08	26.8

DBSCAN-SWA_8

3677691 : 3690874

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ81444.1\|3677691_3680253_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6
AZQ81445.1\|3680358_3681015_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	6.2e-49	46.3
AZQ81446.1\|3681065_3681833_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	56.3
AZQ81447.1\|3682028_3682937_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AZQ81448.1\|3682933_3684196_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
AZQ81449.1\|3684192_3684831_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AZQ81450.1\|3684835_3685612_+	HPr family phosphocarrier protein	NA	NA	NA	NA
AZQ81451.1\|3685700_3687065_+	permease	NA	NA	NA	NA
AZQ81452.1\|3687158_3688151_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AZQ81453.1\|3688213_3689353_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AZQ81454.1\|3689492_3690119_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AZQ81455.1\|3690112_3690874_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP034589

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection