CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034660	Colwellia sp. Arc7-635 chromosome, complete genome	4 crisprs	DEDDh,cas3,WYL,DinG,RT,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034660_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034660_1

1308324-1308473

Orphan

Consensus_repeat	Method
GGCATAAAACCAAACCGTGAAGAAAGCACGTTAACATATCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034660_1

>merge|CP034660|1|1308324-1308473|CRISPRCasFinder
GGCATAAAACCAAACCGTGAAGAAAGCACGTTAACATATCAATTTTAAATGGTGAGGTGTCCGAGTGGTCGCCAAAATGCATTGACACGCCATGCGTGCTCATTGGCATAAAACCAAACCGTGAAGAAAGCACGTTAACATATCAATTTT

>CP034660|1|1|1308324-1308473|CRISPRCasFinder
GGCATAAAACCAAACCGTGAAGAAAGCACGTTAACATATCAATTTT	AAATGGTGAGGTGTCCGAGTGGTCGCCAAAATGCATTGACACGCCATGCGTGCTCATT
GGCATAAAACCAAACCGTGAAGAAAGCACGTTAACATATCAATTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP034660.1\|AZQ83601.1\|1331820_1334832_-\|response-regulator	unknown	unknown	gnl\|CDD\|223715
CP034660.1\|AZQ83589.1\|1302049_1302478_+\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
CP034660.1\|AZQ83598.1\|1322290_1323067_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
CP034660.1\|AZQ83595.1\|1315910_1316309_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
CP034660.1\|AZQ86233.1\|1323691_1326121_-\|peptidase-S8	unknown	unknown	gnl\|CDD\|173803
CP034660.1\|AZQ83600.1\|1328661_1331829_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|225829
CP034660.1\|AZQ83592.1\|1304816_1305371_+\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
CP034660.1\|AZQ83588.1\|1301351_1302035_+\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
CP034660.1\|AZQ86232.1\|1321365_1322262_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP034660.1\|AZQ83602.1\|1335189_1335699_-\|M48-family-peptidase	unknown	unknown	gnl\|CDD\|224368
CP034660.1\|AZQ83587.1\|1300951_1301362_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
CP034660.1\|AZQ83590.1\|1302477_1303395_+\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|274303
CP034660.1\|AZQ83596.1\|1316707_1318396_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP034660.1\|AZQ83585.1\|1298281_1298899_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
CP034660.1\|AZQ83586.1\|1299033_1300038_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
CP034660.1\|AZQ83593.1\|1305383_1306172_+\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
CP034660.1\|AZQ83594.1\|1307098_1308145_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
CP034660.1\|AZQ83597.1\|1318576_1320736_-\|S46-family-peptidase	unknown	unknown	gnl\|CDD\|371067
CP034660.1\|AZQ83599.1\|1326823_1328539_+\|alkaline-serine-protease	unknown	unknown	gnl\|CDD\|173812
CP034660.1\|AZQ83591.1\|1303426_1304773_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235312

Protein	Function_ID	Function_description	E-value
CP034660.1\|AZQ83601.1\|1331820_1334832_-\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.19995e-42
CP034660.1\|AZQ83589.1\|1302049_1302478_+\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	3.51184e-50
CP034660.1\|AZQ83598.1\|1322290_1323067_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	5.84373e-96
CP034660.1\|AZQ83595.1\|1315910_1316309_-\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.81044e-26
CP034660.1\|AZQ86233.1\|1323691_1326121_-\|peptidase-S8	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.80478e-76
CP034660.1\|AZQ83600.1\|1328661_1331829_+\|diguanylate-cyclase	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	9.83104e-22
CP034660.1\|AZQ83592.1\|1304816_1305371_+\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	2.77957e-60
CP034660.1\|AZQ83588.1\|1301351_1302035_+\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	6.85505e-111
CP034660.1\|AZQ86232.1\|1321365_1322262_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.41472e-54
CP034660.1\|AZQ83602.1\|1335189_1335699_-\|M48-family-peptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	1.23608e-25
CP034660.1\|AZQ83587.1\|1300951_1301362_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	1.08391e-58
CP034660.1\|AZQ83590.1\|1302477_1303395_+\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	2.07916e-20
CP034660.1\|AZQ83596.1\|1316707_1318396_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.18612e-68
CP034660.1\|AZQ83585.1\|1298281_1298899_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	5.40709e-98
CP034660.1\|AZQ83586.1\|1299033_1300038_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
CP034660.1\|AZQ83593.1\|1305383_1306172_+\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	6.50031e-52
CP034660.1\|AZQ83594.1\|1307098_1308145_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
CP034660.1\|AZQ83597.1\|1318576_1320736_-\|S46-family-peptidase	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
CP034660.1\|AZQ83599.1\|1326823_1328539_+\|alkaline-serine-protease	gnl\|CDD\|173812	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.50792e-113
CP034660.1\|AZQ83591.1\|1303426_1304773_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235312	PRK04792, tolB, Tol-Pal system protein TolB.	0

>CP034660.1|AZQ83594.1|1307098_1308145_+|quinolinate-synthase-NadA
MTQANLAVDFDFQFPQKPTPLSDVEREDYKARIKILLKEKNAVLVAHYYTDPEIQALAEETGGCVADSLEMARFGNNHPADTLIVAGVRFMGETAKVLTPEKTVVMPTLEATCSLDLGCPIEQFNAFCDQHPDRTVVVYANTSTAVKARADWIVTSSCALEIVEHLDEQGEKILWGPDRHLGAYIEKQTGADMIMWQGACIVHDEFKTKALSDMKALHPDAAILVHPESPAEIVDLADSVGSTSQLIKAAQDLPNKKFIVATDRGIFYKMQQLCPDKEFFEAPTAGEGATCRSCAHCPWMAMNGLKEIEQALLNPEGREVFVDMSLREGALKSLDRMLQFNAELKKNS
>CP034660.1|AZQ83593.1|1305383_1306172_+|tol-pal-system-protein-YbgF
MKPNSILFGMSFAVAANLAVAAEPAPVIEVIAGVPSSTATPSLTDQLVSLERKLDARNRAQVNVQQQLDELQNEVNELRGITELHTYQLSQVLDRQRELYQELDRRVSEALKPANQVPAATNMSATNSGNVNYSSNLTENEAYDRAVNMVLKDKRYDQAIPEFETFNQKYPNSSYAANAHYWLGQLLFNKGELAKARKEFDLVVNNYLDSSKRSDAMLKLAMVEQKENNPAKAVAIYKKLIAEYPNSSAAKLAQPRLKSLKS
>CP034660.1|AZQ83592.1|1304816_1305371_+|peptidoglycan-associated-lipoprotein-Pal
MRLNKTVKALAVVLPIMALSACSSSNTASEDASAMQKNEAAMAEQKSREAAERVKVEAMQRADAIEAKKRQEIEKLRSEHIVYFGFDKSTVGNDFSAILDAHAKFLNENTNVNVLIEGHADERGTPEYNIALGERRAKSIETYLENMGVSSSQLSVVSYGEEKPMVKDRSEGAFAKNRRAVLVY
>CP034660.1|AZQ83591.1|1303426_1304773_+|Tol-Pal-system-protein-TolB
MKKVTLILLLFIAILSKPAMATLEIVITEGVDSARPIAVIPFKWVGTGVMPERLSKVISDDLLRSGKFSPINSSRFPQSPNADSEIDYSAWASEGVEAVVIGEVSETSIGRYQVKYQLVDVIRGQVTGGETQMLSNGELVRASDHILDESTVEIGADQFRRYAHRISDVVYEKLTGTRGAFLTKIAYVIVRDTGEYPYQLAVADYDGFNEHVLLSSKEPLMSPSWHPNGNQLAYVTFENRQAQIHIIDIYSGQRNLISSFKGINSAPTWSPDGKKLAMVLSKDGNPDLYIMEVATKKLRRVTRNRAIDTEPSWTPDGNSLIFSSERGGKAQLYRVNLVDGKVRRLTFDGEMNLGGSLTPDGRQLVMVNRTRGKYHLAKQEFDSGIFQVLTTTRLDESPSISPNGGMIIYSTLHNNRQVLSLVSVDGRFKARLPALNGEVKSPSWSPFL
>CP034660.1|AZQ83590.1|1302477_1303395_+|cell-envelope-integrity-protein-TolA
MSSKYSLPLVLSFTIHIVLAGILLLGDFSSPPKPTPTSVQMEPIQAVIVEKSKVEAQINKIKKQKADDAKKLKDLEQSIAAAKAKRLNEAKRVKELERQRKKKAREKKAADIASKKAKAKANAADKIRKQKEREKKQADEAAAADAKAKRIKEENDAKKAAKKAEDLRKKKAAELKRKEQEARERAAQQKLLEQQMAEDMANRQQARRQQMMTEIGRFTALITQTIKRNLITDRSTMEGKSCKLTISLAPSGFVTNVVTGQGNRIVCEAAKTAVYKAGTLPVSKDPEIFREMRTISLTVAPDKFN
>CP034660.1|AZQ83589.1|1302049_1302478_+|protein-TolR
MYNRVRRRKVAEINVVPYIDVMLVLLIIFMVTAPLITQGVKVDLPQADAEPLSKDMKPPLVASVDAQGNYYLAVGDSKNEPMSAEQVAVLVAEHLKKAPDTPVVVNGDGAVSYDAVIQLMVMLQKKAGVPSVGLMTDTPESK
>CP034660.1|AZQ83588.1|1301351_1302035_+|protein-TolQ
MSAELSFFDLFLQASLLVKLVMLTLLGFSIACWTMIFQRRKVLLAAQTQLKDFEDKFWSGADLSKLYSEVSAKDHVDGIENLFVSGFREFARLRKSHAYAPQVIVDGTHRAMRVALSREVDNLETHLPFMATVGSISPYIGLFGTVWGIMNSFIALGAVEQATLAMVAPGIAEALIATAMGLFAAIPAVMAFNRFSHNVEKLENSYGNFMDEFSSILQRQTATEQHS
>CP034660.1|AZQ83587.1|1300951_1301362_+|tol-pal-system-associated-acyl-CoA-thioesterase
MSLNSFQHTVRVYYEDTDAGGIVYYANYLKFFERARTEWLRALGINQSIFLEQNIGFVVTKVAMDNKASAKLDDLLTITTTIKQLKSASVIFSQQLVNQNELTLCTVEIKVACVDFSTAKPCIIPKSILGAFKRVS
>CP034660.1|AZQ83586.1|1299033_1300038_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MIEADRLIEPIASREDETVDRAIRPKMLSDYTGQQHVKSQMEIFIAAAIKRAEPLDHLLIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPAMEDYQLDLMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQRLEFYNTKELTEIVMRSAHFLNLEIDQEGAFEVAKRSRGTPRIANRLLRRVRDYADVKTDGIVSKSTAASALNMLEVDNEGFDLMDRKVLEAIIDKFSGGPVGLDNIAAAIGEERETIEDVIEPFLIQQGFLQRTPRGRIATNRAYLHFGLDFPE
>CP034660.1|AZQ83585.1|1298281_1298899_+|Holliday-junction-branch-migration-protein-RuvA
MIGRLRGILIEKMAPEILIECHGVGYEVTMPMTSIYALGDVNQEATLYTHFVVREDAQLLYGFANKVERKLFRLLIKVNGVGPKLGLAILSGMSADQFVSCVIHDDLSTIVKIPGVGKKTAERLLIEMRDRLKDWQTDSSDALSHMMPTDVKQENTFVSDSKGDAINALVSLGYSQLQADKAIKSVYEQDKSSEDLIRHALKAML
>CP034660.1|AZQ83595.1|1315910_1316309_-|biopolymer-transporter-ExbD
MARRRHVNEEQEADVDMTPMLDIVFILLIFFIVTTSFIKEEGLLINRPKAKNNPSQVNSPTVVVQIAETGQLKFNGKLVDIERLSARIESFLSKNQTNSAVVIAHSDATHEMVVKVIDQIKSFEQLTISIGK
>CP034660.1|AZQ83596.1|1316707_1318396_+|methyl-accepting-chemotaxis-protein
MKTMTIKQRILLLTILPLVFAISTIMFLIHSELSALGDEQVQDIRSSMMKEKRVILENYVDIAITSVQGVVASGSFDDPVIKAQVARQLRDILFGAKKDGYMFVYDYDGINIVMGPKPELEGKNLYALKDSDGVNVIKELISSAKDGGGFLQYSWNKPSKNANAPKLGFVRGIEQYKWMVGTGFYIDDIDDAVTLARLEIDKRIQRAMMLIAVVGLVLIVLVGFISLFVTVRITKPIQDTVLALNNISHGEGDLTKRLTVYANDEVGQVSISFNQFVEKIHNLVLEIKSSVGDLSRSTQQMNLVVISTNENVVKQKDETMHAASAVHEMAATAEDVAGNASRAAEAAQQADTETASGQIIVEDTIVSISQLSEDVNRATDVINQLSDDAEQIGDVINVIKGIADQTNLLALNAAIEAARAGELGRGFSVVADEVRTLANRTQKSTEEINHMIELLLGRVKEAVGVMNNSSTQGKNTVAQAQKASDSLKTIMVAVSTITNMNTQIATAAEEQTVVTDEISKNVQQVADIAEDSSTKALELEKTSAELIALENRLAAVVNQFKV
>CP034660.1|AZQ83597.1|1318576_1320736_-|S46-family-peptidase
MKKFASLCFALASTATIADEGMWQPHQLPSIAEKLVDAGLKLNPNSLTDLTGFPMGAIVSLGGCTASFVSDKGLVATNHHCVYGSVQYNSTEENNLLKNGFLAKSFKEELPATPGSRIYVTEEITPVTDIIQAALSSDMTGSQRFNSIDLSSKSLVAECESDSKYRCSVVNFHGGLEYYLFKQLTIRDVRLVHAPASSIGKYGGDIDNWMWPRHTGDYGFYRAYVGKDGQPADYSVENVPYEPKHHLKVNKSSVDENDYIMVLGYPGRTNRYRTALEVENQFTWTYPKAKAYREEIIDIIHDNSAPGSDVRIKYESTLAGLANYAKNYGSMVESYNKGTTLARKQSLESELSDWINASGKRQAKYGDALKGLNDLIKQDQQSQARDLIVGYMNYSKMLSTATRLHRLSLENKKPNVERKRGYQERDIAGFEQSMKAVNRRYDSQMDQKILVAMFKHYIELPKSQRLASLDKFFAVEKSSDEQLFQTKLAKMYQATKLNDQETRLAWMNKAPDDFTKSNDPFIQLAVDTYVERKHIEETNEELSGNIQSYRPKYMEALIAYFNAKDLPVYADANSTLRVTYGNVKGYSPQDGLVATPFTTLEGIVRKDTGIAPFDAPKKELALIKNKQYGEYAKKELGSVPVNFLGTLDITGGNSGSPTLNDKAEFVGLVFDGVYESIIGDWDYDTKLNRSIHVDIKYMLWVMEHVDGATNLIEEMDIVE
>CP034660.1|AZQ86232.1|1321365_1322262_+|GGDEF-domain-containing-protein
MYLHISNRHEKLSAELERHIEKHQTIDLTFIEGLFEKYISHTHSIDKQILDPIEKSLTSALEKINLQVDSDITVASNLRKAEQALSKHEYHKSMQSIVTFFMNSITSSQQQHSDLSLALTRSCGEVSFLKSKLEAARHEAIVDSLTGLYNRRGCDIKLQSIDIEQVHSSLAIDIDHFKSINDQFGHFIGDKVIQRIAKVITSSISEHDIAVRFGGEEFVVVMVNKTLKQAHEVAEKIRLAIAQLKLMQRDSKAYLPKISVSIGIAQREDELNWRELFEQADTALYQAKSNGRNRSVCL
>CP034660.1|AZQ83598.1|1322290_1323067_-|5,6-dimethylbenzimidazole-synthase
MDLEEKKLTQSVTQQKTQHSFSEQDQHGLYKSIFNRRDVRGQFLPTKIENDVLSRILYAAHHAPSVGFMQPWNFIVIQSPEIKNKIHQSFTLAHQEAQALFEKDKQEQYKNLKLEGIIESPINICITCDRSRTGKTVIGRTHMKEMDLYSSVCAVQNFWLAARAEGLGVGWVSILHHEILKETLSLPDSVVPIAYLCLGYVSHFKEKPELESANWLARRPIEELVNFDSWGQSAQNATEKSLIDQLRSNSDFPHSFSK
>CP034660.1|AZQ86233.1|1323691_1326121_-|peptidase-S8
MRNKKILGLSALTLSIMAASNVANAQTLETADVIQPILISANDSMTAVNADFSQWREEQKFKSHDFTDRILVKYKSGFEAQALSNFASEKAMPNGLAKKAGNSLKHLKKLKNGRHVISLGKQKHINDVKAMVLELNSHADVEFAEPDYKRYLMAQNQPWGIADTQSDLLSDNDAANMTVCIIDSGYERANPDLNANNASGTNNSGTGNWYQNGGSHGTHVAGTIAAVNNSEGVVGIMPNTNVNLHIVKVFNAAGWGYTGELIDAVDTCVDNGAKVINMSLGGAGSSNAERNSLQAAADAGVLLIAASGNDGDSTLSYPASYDSVMAVGALDQGRQHAEFSQYTSQVEISAPGEAILSTVAGDGRLGYITLGSTSYGNDEVVPQTHYIESGGSFTVSNVNSSANGVLSACTLSGSSYSCSNVSGNICLAERNDNQKGSNYPEINPAKACADAGASGVIVYSNSARPGLQNPFLVDANTDVTVPTVSVNRALGLQLMGQLGTNANLNVVGNQDYAYYNGTSMATPHVTGVAAIVWSNNPDCSATEVRNALKSTAIDLDVAGRDDKTGYGLVQAKAASDALAASCGDGGGTTTPPTGGSNVLENGITKTNLAGAAAQELSFTMEVPAGAADLSFTMAGGTGDADLYVKFGSAPTSTSYDCRPYKGGNAESCPIATAQAGTYHVKVIGYSTFTGVNLTADFTEGSTGGGGGAVGGSASITDITVARRAWTYYTIDVPANMTTLDFNMSGGTGDADMYIRRGAQPTSSAYDCRPFKTGNTESCPIANPIADTWHIGIYGYSAASGISLDVTYNP
>CP034660.1|AZQ83599.1|1326823_1328539_+|alkaline-serine-protease
MLFTSIKRNIKPLSIVSLVISTVVLMGFSSVAENDKEMNSYIISAKNLVVLKDNLKKMGVKPSHELTIIDSVAVELTAEQLAQLKEKQTIKVTTNHKVKLSGIGGRQRQWQPKSVVTEQVDATYVHNTGNFGGGVTIGFLDTGLEQLPGLSSDLYGQDKAWGTYDAINDIVSNYGKEESGHGTHVASIAVNSDYDSNGQIYGVAPNAAHVGIKAFDAEGKATYADVIRGIGWALQVKEQINLRVLNMSFSGPVRSNYWDDPLNKAVMKAWQAGIVVVASAGNSGPDPMTIGVPGNVPYIITVGAMTDDYTAFNYSDDKVASFSGAGPTAEGFVKPDVIAPGGHISGLMAFDSKIAADHPEFHDGGRYFEMSGTSQAAAVVSGVVALLLTDNPALTPDQVKCKLLASSYSANNEDGSNRYSVFQQGAGLVSAYYAIESQANNCANSNLDIAKDLNDEEHYSGPSNINEDGSFYVEGLGQEYVWDVNDSSFVGDAMLWRTSLEHYDAWQDTATTDGMLWRTGFETDAMLWRTGFGTDGMLWRTGFGIDGMLWRTSFEASSMAPISVNNWVDPQ
>CP034660.1|AZQ83600.1|1328661_1331829_+|diguanylate-cyclase
MKKTLLLLLVFGCFATFAKEVKLFKSFGIDNPMSYKFVLTIAQDKNGFMWFGGQEGLHRYDGHQLLSFYNSTSVNNSLSSNVISRIIIDSQQRLWIGTRGGGLNLYQPESKSFRHLTTKSKQAQIGNDGINTLFEDSEGKIWIGTENGLNILTITGETWEVVQIKQKLGSEFSLSHNTVYSIVETETNEIWVGTNGGGISVFDLMGSFKRVIKYAPNKNDSYVNKFVNALFKDKQGNIWIGTVDNGLLKFTEDESSISHFKFDVDNDKSISSNTIHNVYQDLSDNIWIATDNGLSIYDNQTNQFERFNYSASNPYSVSSNYIMNFFEDQNGLMWVGTINGLNRWDPNMTTFRQYTAREYPALDRPNITSFSQASLDSIFFSAYNGRIYQLSTSLDEVKKLDLGGFFDNLRVMALFYDNNSLWVGTRASGLYHVDLKTKKIDIYKHDSTDEFSISANSVTDIIKDINGHLWISTFQNGLNRLNSNGDFTRYVSDKNNPELGPNNNAILHLLEDEQGIIWIANYGGGLSRFDPKVETFKHIVNDKADPTSLSSDLSWYLLLDNDKNLWVSTQAAGLNVLSYKDRIEQSYNFKRIDTNDGMKSQTVYGMTQDRFDDIWLSTNQGITRYSVDNKSFKHFDLSHGLVDLDYSHGAIFNSLDNVIYFGAGKGVTSIQPDSNQDKISPIPVRLTNVFKLNEPMVFSSALTDIKNLELSYSDQLITFEYVGLNYANPESTEYKYRLLGFDQEWLDAGKSRRATYTNLPAGKFQLQIKAGNSDDVWSDPGLTLDITVNPAPWNTWWSYILYTLAVALLLLFYSRFLNRKLVIEQQQKIYLEQQVHEKTEKFKSKNLELAQANKQLEKAAIVDKVTGVKSRRYLDIYIEQTSQLMNQMHQNLLPVQRELLPRLYILMVQLKCDTEISNSQLINVTDLLLYSRNNDDLVIRWSPDAFAVIGYEKANNANELAARLSGRLKNVVDETTSTNIAYSFFPFNRENPLDLTWDQISVLIEQALSFTHENKQLSWLGLCGPKSNTFDYLQLMKQRSLANLKEQVVVKSGLA
>CP034660.1|AZQ83601.1|1331820_1334832_-|response-regulator
MQIKKIKTLLTISIILTLLPYFLINDIFSFSSSWLENGPLLLLQLLSIGFITLSYLRIKVRELKLFWQFITLALLSSLISNLSFSFNLINSNLLLHDFFTLCSYFFVLLAIETKPHVNETSTNRHVSSRTAAIFFTLISFSYLVLLPIEFANNIEDKIASSQLFHLLISALIFIRLATNRYQCQGQFWCRIYNMLAIAAGAMLLGNSIDYLNNWFSISLPPYLLTLLALTPYCALITAAYYSLKPSEPSAKAPCSSTPELYLISLISCSILIHLAGIEFNLHYNIKSHLQSILITTWLGISLTLLTTIIYRKNNLEQKKQQQIDSQNSAQQELRKINQVLTNAMINSEDKAIVNVSSNAILTTSIDGTVLSANPAAVQLFQCLEREIIATRVSDFFSSDDQMHYFFDFKSNVYTLQRKDTGISIECMATRKDGTQFPVQAELQWAEREEQPLVVITFINLTARKLAEQQALDLKDKFIANISHEFRTPLTIINGILDRYLVKAQTEEEGKELKTAKRNGLRLVRMVEQLLELSRLSDNPQLTLATYRLKTLMSMPADSFMRLATQNKLSLTCEIPDNLWLDCDAQAFEKIIFNLIANAIKYTPAGGSIQVIAHSDSDNFTLDIIDTGIGIDSASQSKIFERFQRADDEKNQGVFGVGIGLSLVNELVKAHNWQINVFSEYNKGSKFSLIIPCAPAISAEKLAPTGISQSEVASLLMEPHNPVKDIRHHSQKVVLVIEDNLDMQNHIKQVIEQHHHSLLAGSGELGLTLAQEYIPDVIICDIMLTGIDGFAVLKQLKSHELTSHIPVILLTARSDLDSRLHGLHLQADEYLSKPFNHQELLTRISNLISNREKLQKRYLNKLNADLQINRKNTSFDNAAELSHSSADDVTLDNKFLEKLETVTAEVYINTDLDIVQLAAKMAMSERQLQRKIKALTGITPNNFIKEFRLKKAKVLLQNGSQIGRIALDVGFSSQTYFGRCFKEMFSCTPKQYQQQQQKNQRPLS
>CP034660.1|AZQ83602.1|1335189_1335699_-|M48-family-peptidase
MTAHLKYLAHYSTDIQQQVSNLIEEKKLKSYLLGQFPTPHDMTTDKALRQYTQALKQQFLKKSAPLSQVKYDDKIHIINNALGLHTYVSRVQGNKLKSKNEIKIGSIFKKAPQALLNMIVVHELAHLKEKEHDKAFYKLCQHMLPNYHQLELMTRIYLTELENNGSIYS

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Crispr_ID: CP034660_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034660_2

2810367-2810519

Orphan

Consensus_repeat	Method
TAAAACCTTAAAACAAAAGCACCTTCTGCTCTTTACATCCCGCACCGTGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034660_2

>merge|CP034660|2|2810367-2810519|CRISPRCasFinder
TAAAACCTTAAAACAAAAGCACCTTCTGCTCTTTACATCCCGCACCGTGTCATTGGTTCAAGCTCAGTATCGTCCACCATCTTAAAATTTCAGCATAATAATAAAACCTTAAAACAAAAGCACCTTCTACTCTTTACATCCCGCACCGTGTCA

>CP034660|2|2|2810367-2810519|CRISPRCasFinder
TAAAACCTTAAAACAAAAGCACCTTCTGCTCTTTACATCCCGCACCGTGTCA	TTGGTTCAAGCTCAGTATCGTCCACCATCTTAAAATTTCAGCATAATAA
TAAAACCTTAAAACAAAAGCACCTTCTACTCTTTACATCCCGCACCGTGTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP034660.1\|AZQ84691.1\|2799604_2799835_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ84704.1\|2813111_2814773_-\|cytochrome-C-oxidase-Cbb3	unknown	unknown	gnl\|CDD\|366994
CP034660.1\|AZQ84692.1\|2800508_2801567_-\|long-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|236741
CP034660.1\|AZQ84693.1\|2801533_2801824_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236741
CP034660.1\|AZQ84705.1\|2814827_2815709_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
CP034660.1\|AZQ84695.1\|2804285_2806139_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
CP034660.1\|AZQ84703.1\|2812395_2812854_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|181857
CP034660.1\|AZQ84700.1\|2810775_2811240_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225980
CP034660.1\|AZQ86319.1\|2817608_2818052_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380027
CP034660.1\|AZQ84696.1\|2806141_2806786_-\|two-component-system-response-regulator-UvrY	unknown	unknown	gnl\|CDD\|236538
CP034660.1\|AZQ86320.1\|2818094_2818580_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380027
CP034660.1\|AZQ84694.1\|2803621_2804200_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
CP034660.1\|AZQ84701.1\|2811374_2811581_+\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ84707.1\|2817088_2817634_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380027
CP034660.1\|AZQ84699.1\|2808097_2809510_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
CP034660.1\|AZQ84706.1\|2815825_2817022_-\|heme-d1-biosynthesis-radical-SAM-protein-NirJ	unknown	unknown	gnl\|CDD\|188566
CP034660.1\|AZQ84698.1\|2807358_2807874_+\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	unknown	unknown	gnl\|CDD\|179953
CP034660.1\|AZQ84702.1\|2811777_2812305_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|236935
CP034660.1\|AZQ86318.1\|2798936_2799506_-\|DUF2959-domain-containing-protein	unknown	unknown	gnl\|CDD\|378580
CP034660.1\|AZQ84697.1\|2806917_2807175_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034660.1\|AZQ84704.1\|2813111_2814773_-\|cytochrome-C-oxidase-Cbb3	gnl\|CDD\|366994	pfam02239, Cytochrom_D1, Cytochrome D1 heme domain. Cytochrome cd1 (nitrite reductase) catalyzes the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.	8.41237e-148
CP034660.1\|AZQ84692.1\|2800508_2801567_-\|long-chain-fatty-acid-transporter	gnl\|CDD\|236741	PRK10716, PRK10716, long-chain fatty acid transporter FadL.	5.60142e-111
CP034660.1\|AZQ84693.1\|2801533_2801824_-\|hypothetical-protein	gnl\|CDD\|236741	PRK10716, PRK10716, long-chain fatty acid transporter FadL.	2.55525e-31
CP034660.1\|AZQ84705.1\|2814827_2815709_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	6.8586e-127
CP034660.1\|AZQ84695.1\|2804285_2806139_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
CP034660.1\|AZQ84703.1\|2812395_2812854_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|181857	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.	2.87765e-92
CP034660.1\|AZQ84700.1\|2810775_2811240_-\|hypothetical-protein	gnl\|CDD\|225980	COG3449, COG3449, DNA gyrase inhibitor [DNA replication, recombination, and repair].	2.03487e-37
CP034660.1\|AZQ86319.1\|2817608_2818052_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|380027	pfam17805, AsnC_trans_reg2, AsnC-like ligand binding domain. This entry contains an AsnC-like ligand binding domain.	2.13703e-20
CP034660.1\|AZQ84696.1\|2806141_2806786_-\|two-component-system-response-regulator-UvrY	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.30499e-149
CP034660.1\|AZQ86320.1\|2818094_2818580_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|380027	pfam17805, AsnC_trans_reg2, AsnC-like ligand binding domain. This entry contains an AsnC-like ligand binding domain.	3.24728e-32
CP034660.1\|AZQ84694.1\|2803621_2804200_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	1.33738e-53
CP034660.1\|AZQ84702.1\|2811777_2812305_+\|transcriptional-regulator	gnl\|CDD\|236935	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional.	4.99916e-37
CP034660.1\|AZQ84707.1\|2817088_2817634_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|380027	pfam17805, AsnC_trans_reg2, AsnC-like ligand binding domain. This entry contains an AsnC-like ligand binding domain.	2.77525e-25
CP034660.1\|AZQ84699.1\|2808097_2809510_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
CP034660.1\|AZQ84698.1\|2807358_2807874_+\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	2.23304e-129
CP034660.1\|AZQ84706.1\|2815825_2817022_-\|heme-d1-biosynthesis-radical-SAM-protein-NirJ	gnl\|CDD\|188566	TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical SAM protein NirJ. Heme d1 occurs in the cytochrome cd1 subunit of nitrite reductase in species such as Pseudomonas stutzeri. NirJ is a radical SAM protein involved in its bioynthesis. In a number of species, distinct genes NirJ1 and NirJ2 are found in similar genomic regions; this model describe authentic NirJ from genomes with NirJ only. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	0
CP034660.1\|AZQ86318.1\|2798936_2799506_-\|DUF2959-domain-containing-protein	gnl\|CDD\|378580	pfam11172, DUF2959, Protein of unknown function (DUF2959). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	2.36256e-92

>CP034660.1|AZQ84699.1|2808097_2809510_-|glutamate--tRNA-ligase
MTLTTRFAPSPTGYLHVGGARTALYSWLYAQKNGGDFILRIEDTDLERSTQASVDAIMDGMNWLNLAWTHGPYFQTQRFDRYKEVIEQLLASGNAYRCYSTSEEVDAMREEAKAKGEIEKYNGLWRERTDYPADKPYAIRFKNPLDGNVVIKDMVKGDITISNEQLDDLIIARSDGTPTYNLTVVVDDWDMKVSHVVRGDDHISNTPKQINILKALGATVPEYAHIPMILGDDGKRLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDKEIFSREEMIELFDLKDCNRAPSGFNTDKLIWVNQHYMKTLDPAYVATHLAWHMAEQGINVENGPALEEIVKVQADRVKTLKEMAQISRYFYEDFTELDASAVKKHLRPVVKEPLLLVKEKLAALSDWSPELIHAAINDTATELEVGMGKVGMPLRVAATGGGNSPSLDITLALLDQEKVLARIDQAIVVVEARIANS
>CP034660.1|AZQ84698.1|2807358_2807874_+|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase
MEQQNSFSKEDLVKAGTGEMFGPGNSQLPSDNMLMMDRIVSVTEDGGEHGKGEIIAELDISPDLWFFDCHFKGDPVMPGCLGLDAMWQLTGFFLAWSGGPGHGRALGVGEVKFTGQILPTAKKVTYKITLKRVIKRKLFMGIADGTVSVDGRVIYTAKDLKVGLFTDTTKF
>CP034660.1|AZQ84697.1|2806917_2807175_-|hypothetical-protein
MMNIKKKALTNAEKQKRYRARQKDSGKKEMRGYLTPEAQKCYELIAEQTKWNDSIILSNAVRLTYAAYKNGQIGLLNSWLNKNEL
>CP034660.1|AZQ84696.1|2806141_2806786_-|two-component-system-response-regulator-UvrY
MINVLLVDDHELVRTGIRKILDEVKGLKVIGEAKTGEEAVQFCRKIEPNVVLMGMNMPGIGGLEATKKIIRYAPDVKVIVLTVYCEDPIPTKVMQIGAAGYLTKGAGPDEVINAIRAVNSGQRYITPEIAQKMALSQFKSADENPFSSLSERELQIMLMITRGEKVPDISEQLVLSTKTINSYRYRMFEKLNVGNDVELTHLAIRHGMLKTEVL
>CP034660.1|AZQ84695.1|2804285_2806139_-|excinuclease-ABC-subunit-UvrC
MSEKPLSNDEVAFDHKAFLAAVSEQAGVYRMYDIAQTVIYVGKAKQLKNRLSSYFRKDVGSNKTRVLVKQICAIDVTVTHTEGEALILENNYIKKYQPKYNILLRDDKSYPYLLITSHKHPKLGLHRGGKKIKGDYFGPYPTVGAVWESLRLMQKLFPLRQCEDSYYRARSRPCLQHQLGRCSAPCVDKISPEDYQKQVQLAKLFLKGKSSTVIEHLVENMENASKTLNFEHAAKYRDQIATLRKVQQQQFVSGSTAEMDVIGLHRHKSQACIHLLFIREQKILGSKSYFPTVPVDTSDAEIIEAFISQHYIGNDLNAGAIPKEIIIPQAIESQQDIIKVIRAQAEHEVKISHNVRTERAQYLKLACTNAANALATRNSHKESMQARFSALNEVFELTNGISRIECFDISHTMGQQTVASNVVFNQEGPLKSDYRRYNVHGITPGDDYAAMAFALDKRYSKVTSEEKMPDIIFIDGGKGQLSKAEEFFAGVDKVKTPLLVGVAKGESRKPGLETLILAGSHQLISLPATSPALHLVQHIRDESHRFAITGHRAKRQKASKKSTLETIPGIGAKKRQALLQYLGGLQEVLKADRAALEKVPGISKLLAENIYDALHDN
>CP034660.1|AZQ84694.1|2803621_2804200_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MWTIPNQITLFRIILIPVFIVVFYLPVSWNHFGAFAVFWFAAISDALDGYLARKLNQSSAFGAFIDPVADKLMVVAALVILIQDLQVWWISISAILMIAREIFISALREFMSSRGKRDEIAVSQMGKYKTAAQMLGIMGLIWSPTYDIPLILFKFPHEILMFAAYSFYALATVLTFWSMVSYFKVAWPELTK
>CP034660.1|AZQ84693.1|2801533_2801824_-|hypothetical-protein
MTLQKSILAAAITLATFNSYSASFQLNETSASGLGRAFAGDGVIADDAAVLARNPAAMALFDKASLSIAATYVDPGVDIEGISALICLALIMMLAN
>CP034660.1|AZQ84692.1|2800508_2801567_-|long-chain-fatty-acid-transporter
MLGADYDVSQLEQKGVVPTAIIPAIYFINPVNDTFAYGVGINSNFGLKSEYDNDYAAGSIGGKTDLKTVNANISGSYRVNEAISLGLGINVVYGEAELIRHAGTVLENGVSIPGAGLVVGAVPGTTEIINMAGDDFGYGWNAGIVYEINSNHRFSLTYRSKVELAFDGEFSGVGIPEQAANLTIDMPAITEFSGFHQFTEQWSTHYSIMHTQWSSFEKLEAYIDDGIAFEKQENFEDSYRFALGATYQVDQALALRIGVAFDQSAAEDYRSISIPDSDRLWYSAGATYQLSNNDSVDFGISYINGDSVVVTEEDALLGKLPETLNAVVGNKDWSFSSEGNALILAIQYNKSF
>CP034660.1|AZQ84691.1|2799604_2799835_-|hypothetical-protein
MAQQGSGGNVLAAICSFFIPGLGQLVQGRILPAILFFVFASIFWGLSWLIFPIAFALLTHLWAIIDAARYTSRYDS
>CP034660.1|AZQ86318.1|2798936_2799506_-|DUF2959-domain-containing-protein
MEKVGVHKRDIMLDRVENAQTAQQDAQEQFKSALEQLSELINYDGGDLASQYELVNDQYEASKASAAEVESRIAAIEGVADALFDEWNEEIQQYSSQTLKRQSQQKLRETQGNYQSLIKAMHRAKDKMTPVLSALKDNSLYLKHNLNAQAIGALQGEYKTIKRDVESLVAEMSKAIAQSQQFIDLLQPE
>CP034660.1|AZQ84700.1|2810775_2811240_-|hypothetical-protein
MNVEIINFPETKISVYEHHGSSTLENESIMRLVQWRKENKLAPSDIHRSYGIHYNDPNTVSPADYRVDLCVSVLDDVAPNQHGVVTKIMPALRCARVRYLGSRENMTTARDLYKKWLPKSGETLAKFPIFFHYVNVGPGVEDSDMITDVYLPIE
>CP034660.1|AZQ84701.1|2811374_2811581_+|hypothetical-protein
MQDSASRERVSTKALIEENGCSIIEINNAGDDPLSPCPKGAKLENQLRVAALDKGITIVFVLRLDLIS
>CP034660.1|AZQ84702.1|2811777_2812305_+|transcriptional-regulator
MSEYLVLTAMGPDRTGSVSDLTKLASECGCNILDSRMAVFGLEFTLIMLLTGTNKAIHQLESKLPAVAHELELITMMKRTSGYREQEFVHHYQADYAGIDQPGVLKAVTAFFATRNIDISSLKSEINQKNNHMSASVLIALMEETSIEQLESDFVQLCEQFNVQGCIKKTASNLL
>CP034660.1|AZQ84703.1|2812395_2812854_+|thioredoxin-dependent-thiol-peroxidase
MLEVGKPAPTFTLQDQNDSPISLETFAGKKVLIYFYPRASTPGCTVQACALRDTKAELDALNVVVLGISPDTPKKLTNFVNKQALNFTLLADEDHATCEAYNVWQLKKFMGRENMGVVRTSFLIDEEGKLEHIFNKFKTKDHHEVVLDYLQK
>CP034660.1|AZQ84704.1|2813111_2814773_-|cytochrome-C-oxidase-Cbb3
MKNNIGIQTPLVQVIKNALFSSILLFIFSATAQANKIAGVAEPTTAIKINAVDDAQALYQEHCQSCHGVGRMGAMGPALFPENLSRLRKNKAVDVIQQGRAATQMPAFNQQLSAEQTQSLVDYIYTPPKTQPRWTMADIKATNIQHFDQSKLGNKPLFDADLMNLFIVVELGDHSATLLNGDTFEPITRFKTRFALHGGPKYSPDGRYVYFASRDGWISKYDIYNMKIVSEVRAGINTRNLAVSSDGKYAIVGNYLPHNVVILDTQDLSPIKTIPTIDSDGVSSRVSAVYNAPPRNSFIVALKDVKEVWEIPYSDKAGVILDKDLAHDDTFDSDSVQIENSQVKDNFPIRRIKTEDYLDDFFFDPQYVNLIGASRDSHNGQVINLDAKKKIATIDMAGMPHLGSGITWQYQGNTVFASPNIKEGRVSVIDMTHWKVIKEIETQGPGFFMRSHSNSPYAWVDVFFGPNKDKVHVINKSTLEIVKTLTPVPGKTAAHVEFTKDGQYVLLSIWDDDGALIVYNANTLEEIKRLPMKKPSGKYNVFNKINYEKGTSH
>CP034660.1|AZQ84705.1|2814827_2815709_-|uroporphyrinogen-III-C-methyltransferase
MYNMTQLSNEHQLSTNVLNNINRKSTLQPGEVALVGSGPGDAELLTIRALRFIEQADVAIYDRLVSDEIMALLPEGCERFYVGKEQAKHCVPQGKINELLVQYAQQGRKVLRLKGGDPFIFGRGGEEAEFLLQNGISCHVCPGITAASGCTTYAGIPLTHRGVAQGCTFITGHMQNDGQLNLPWQSLSCGSQTVVFYMGINTLPSITEQLIKHGRDANTPAALIRKGTQPDQQIFRGTLSSLADLVVKHKITPPTLIVIGDVVNQLTDTALAKPGFLDAKHYQTQMQLTEKVG
>CP034660.1|AZQ84706.1|2815825_2817022_-|heme-d1-biosynthesis-radical-SAM-protein-NirJ
MFRISQLLKTFHDNSPAKKAHKMPGPVVIWNLIRRCNLRCKHCYSSSLDMEFNDELSTEQVKATIDDLKVANVPVLIFSGGEPLLRPDIYEITAYAKAKGFYVALSTNGTLITEDNIEKIKAADYQYVGISIDGLEDFHDEFRRQEGCFQESMKAIDLCKAAGIKIGMRLCLTRDNFEDLPKVLDLMEEKKVDKFYLSHLNYSGRGKRSAESDAMFKMTKDAMIMLYERAWSHIEQGIETDFVTGNNDADGPFLLQWVEREFGEKYPERIANLKQRLINWGGNSSGVNVANIDNTGTIHPDTYWWGHPIGNVKTEKFSDVWKNTQDPLMLGFRQQPRPVKGRCSQCQYLNICGGNTRTRAFAQSGDVWAEDPGCYLTDSEIGVESRVIVPEEIPFVSV
>CP034660.1|AZQ84707.1|2817088_2817634_-|Lrp/AsnC-family-transcriptional-regulator
MSNYTCQPNKVLSPLERQYVLLTQSGLPIVAQPYQVIAEQLEISVADVLAMTLDLKERGIIRRIAAVPNHYKLGYRFNGMTVWDVEDSSVSEYGKAIGQLPFVSHCYLRPRHLPRWNYNLFAMVHGKTEHEVQQYRTQIKDLLINVLQVRNDDPDHGGTFQTNDMLTSTEILKKTGLRLKR
>CP034660.1|AZQ86319.1|2817608_2818052_-|Lrp/AsnC-family-transcriptional-regulator
MSELDKQLINLLQRGLPVAERPFLAIAEQLNSSEDEVLERLNHLMTSRVLTRFGPMFDAVCLGGAFTLAALAVPENRFEEVAAQVNSFDEVAHNYRRTHDFNMWFVVGAESEAEVNQVISSIEKTTALPVLNTPKLEEFYVQLYLPA
>CP034660.1|AZQ86320.1|2818094_2818580_-|Lrp/AsnC-family-transcriptional-regulator
MSLSQQQELRAILEKGLPHAAQPYLLIAQALNTTEAQVLAQIQLWQEDSLIKRFGLVVKHRKLGFKANAMVVWNIADEQVDDVAAQLSSCSEVSLCYRRPRRLPDWPYNLFCMIHGTDREIVTAQIDAMVKKFSLSYVEKDILFSFKAYKQQGARYTKQGI

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Crispr_ID: CP034660_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034660_3

3393613-3393818

Unclear

Consensus_repeat	Method
GCGCTAATTTAGAGTGAGTGTCCGTTTAAATT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP034660_3

>merge|CP034660|3|3393613-3393818|CRISPRCasFinder
GCGCTAATTTAAAGTGAGTGTCCGTTTTAATTTTTACCGCTTCCTATGAAATTAAGAGGACACTCATCGTAAATATTGCGCGTGGCATCAGCGCTAATTTAGAGTGAGTGTCCGTTTAAATTATATTGCGCGAGACTCAAGATGAGTTTTTATTGAATATCGATATCGGTATCTGCGCTAATTTAGAGTGAGTGTCCGTTTAAATT

>CP034660|3|3|3393613-3393818|CRISPRCasFinder
GCGCTAATTTAAAGTGAGTGTCCGTTTTAATT	TTTACCGCTTCCTATGAAATTAAGAGGACACTCATCGTAAATATTGCGCGTGGCATCA
GCGCTAATTTAGAGTGAGTGTCCGTTTAAATT	ATATTGCGCGAGACTCAAGATGAGTTTTTATTGAATATCGATATCGGTATCT
GCGCTAATTTAGAGTGAGTGTCCGTTTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP034660.1\|AZQ85113.1\|3390659_3391310_-\|DUF922-domain-containing-protein	unknown	unknown	gnl\|CDD\|368715
CP034660.1\|AZQ85122.1\|3398172_3398430_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85111.1\|3388110_3389106_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
CP034660.1\|AZQ85123.1\|3399457_3399958_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
CP034660.1\|AZQ85124.1\|3400066_3401341_-\|phenylacetate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|341239
CP034660.1\|AZQ85116.1\|3394460_3394994_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ86362.1\|3389395_3389908_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
CP034660.1\|AZQ85110.1\|3387135_3388017_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
CP034660.1\|AZQ85120.1\|3396831_3397299_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
CP034660.1\|AZQ85125.1\|3401694_3402516_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
CP034660.1\|AZQ85117.1\|3395120_3395423_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85112.1\|3390042_3390393_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85109.1\|3386277_3386967_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|236774
CP034660.1\|AZQ85114.1\|3391898_3392357_+\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85121.1\|3397635_3398106_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP034660.1\|AZQ85107.1\|3384455_3385220_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
CP034660.1\|AZQ85108.1\|3385408_3385726_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85119.1\|3396232_3396670_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
CP034660.1\|AZQ85115.1\|3392445_3393420_+\|transposase	unknown	unknown	unknown
CP034660.1\|AZQ85118.1\|3395564_3395897_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034660.1\|AZQ85113.1\|3390659_3391310_-\|DUF922-domain-containing-protein	gnl\|CDD\|368715	pfam06037, DUF922, Bacterial protein of unknown function (DUF922). This family of proteins has a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold.	1.06475e-53
CP034660.1\|AZQ85111.1\|3388110_3389106_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.26297e-110
CP034660.1\|AZQ85123.1\|3399457_3399958_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	7.61695e-11
CP034660.1\|AZQ86362.1\|3389395_3389908_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.55975e-44
CP034660.1\|AZQ85110.1\|3387135_3388017_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	1.77639e-170
CP034660.1\|AZQ85120.1\|3396831_3397299_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.00039435
CP034660.1\|AZQ85125.1\|3401694_3402516_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	2.7336e-110
CP034660.1\|AZQ85124.1\|3400066_3401341_-\|phenylacetate--CoA-ligase-family-protein	gnl\|CDD\|341239	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence.	3.57908e-101
CP034660.1\|AZQ85109.1\|3386277_3386967_-\|pseudouridine-synthase	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	2.30565e-88
CP034660.1\|AZQ85121.1\|3397635_3398106_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	4.40696e-67
CP034660.1\|AZQ85107.1\|3384455_3385220_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	2.8001e-09
CP034660.1\|AZQ85119.1\|3396232_3396670_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	1.27596e-16

>CP034660.1|AZQ85115.1|3392445_3393420_+|transposase
MATPRKQQISLADTPYYHCVARCVRRAFLCGEDKLSGQSYEHRRGWVEDKLHFLTQVFAIDVCAYAVMSNHYHVVLFIDEEKAKQWSMTEVLERWHRLYKGTLLTKQYCHGDTLAEPLLDIVKATAEVYRKRLMKISWFMGYINEGIARKANQEDNCTGRFWEGRFKSQALLDEAALAACMAYVDLNPIRAKIAKTPEDSTHTSVKLRCEQAKKNQQPNILLPFIGNPRKNMPKGLPFELADYLQLIELTGRCIRADKPGYIDENQPPILSRLNISAENWLIITTEFRTQFHGAIGHEDALSDYCEHQQLKRRQNLSHCNALFS
>CP034660.1|AZQ85114.1|3391898_3392357_+|hypothetical-protein
MYFWNTKALSDDIKNSKLTENDWKNYYLAGLIFLTLSIYIIALSPRENITSVLIEAILMIGIIIFGVNVTFNTHKASDNNVANYISKMTALSFPLSVKFFTLSMLIGFVMGIAEGAGLSLELEQSWFITVLSLSVEILLFWRLNTHLQSINT
>CP034660.1|AZQ85113.1|3390659_3391310_-|DUF922-domain-containing-protein
MYYGSGFTNPQIWRLAPRGESLCLCYKERVVKVLLLISIFLSFYSSAETKVVESTLFYEVAPASKGSLLETVNSASPIRENGDVFHGYTKYEINWRFWWKSNNKQCVFTKVETTLKLKYTMPQLRSSKSDVKVVWSNWYPNLEIHEKGHGKLAKDTAYKIDKNLLSLGPKANCNLLEKAGNKLAHKLIGELKKSSKQYDLNTNHGETQNAWLYLHL
>CP034660.1|AZQ85112.1|3390042_3390393_-|hypothetical-protein
MLYLYLGYILAQSYAVIEKLILSNIAPLAMFFSVVVFIIWSVFPVLGYLLAKICKAKGNLNNKTLLVFGLILGGVENVLFHFNILSYGQESVGTLIVFCLSFVLAYVSLNKPLQQG
>CP034660.1|AZQ86362.1|3389395_3389908_+|SCP2-domain-containing-protein
MPFSVRRSALSLLPKILKPSLRLLPFQVQKSWLIPALHTVFKEAIDDGDFEFLTDKWLKISITDIDLHWWLSFQGDSLIMASPKQAPQEDVHFSASGDDLLLIAGRKQDPDTLFFQRRLHIEGDTELGLAVKNLIDAIDVEQLPSNIHKVIDTLAEVVEQTHQEIKFSAQ
>CP034660.1|AZQ85111.1|3388110_3389106_-|U32-family-peptidase
MELLCPAGNLPALKTAIDSGADAVYIGMKDDTNARHFAGLNFNDGKLAKAADYVHQHGKKLHVAINTFAHPGGEDRWRTAVDNAVAIGCDALIIADLGILDYAATKYPDVERHVSVQASTTNLEAIKFFKNNFDVERVVLPRVLSVQQVRQLAKNSPVKLEVFAFGSLCIMSEGRCYLSSYMTGESPNTAGACSPAKYVRWQDTEQGLESRLNNVLIDRYQSDENAGYPTLCKGRFEVDNNVYHALEEPTSLNTLALIPELANMGIVSVKIEGRQRSPAYVEQVTKTWRMALDRFAQSPDKYDVEQAWMNTLANLSEGSQTTLGAYHRKWQ
>CP034660.1|AZQ85110.1|3387135_3388017_-|U32-family-peptidase
MKLSLGPSLFFWPKNDVEAYYQQALTSNADIIYLGETVCSKRRELRAKDWINLATELAKNSNKQIVLSTMTLLESPAEIQTLRRLCANGELLVEANDLSAVQLMHEQKLPFVAGPAINCYNMATLKVLLKQGMSRWVMPVELSGDWLKTLLEQAQDANIREQFECEVFAWGYMPLAYSARCFTARSEDRPKDDCQYCCIKYPQGRKMNSREGERVFILNGIQTMSGYQYNLINEVPEMASMGVDIARVSADSEQAFIMLDQFGKQLVQAQKYTLDGVEECNGYWHKIAGMSVA
>CP034660.1|AZQ85109.1|3386277_3386967_-|pseudouridine-synthase
MRLDKFICKSTELTRTEAKKLLKMGKVTVNDVAIKDPATQVHENNDICIEGEMLTARSSRYIILHKPLDTICSNVDELYPSLLHLIDVDRAFDMHIAGRLDADTTGLVLVTDDGRWSHNIISPKKQCEKVYRVWLRNPLREDTAEKFTHGVQLQGEDDLTRPAKLTQVAEKEVLLTITEGKYHQVKRMFAAVGNKVVGLHREQIGPVKLADLPLAQWRYLTNDEVEAFL
>CP034660.1|AZQ85108.1|3385408_3385726_-|hypothetical-protein
MDVLVELLPPSYTAKTESSAKDSRRKNQSQYKNSENKALQKLNEIVEPEREDQQEISNGDKQVVPDIERRKGDERRQQRMKRGRWLESRDRNDRRATAMTVFVKV
>CP034660.1|AZQ85107.1|3384455_3385220_+|transporter-substrate-binding-domain-containing-protein
MKTCLFIVILTLFSNIVLADEKKLRTSYYRQNMAPQLFFDENNTPTGGILFDITHAIADKLDLELEMLPIPRKRIEQTLVRNIIDMHCAANKSWYTLSTLQWSSVIYKNRDILINNQGIKSLAELANYKQLKVGTSLGYVYPELISYIKNNNILPVSSVSPKDSYKLYRKNKVAGFVIPEIEASPFIKEITDSVVILNNNDIRCVLAPSMKKSRVDSISDAIEQLKSSGDIDAILSKYMPEPKLAREDAKMLAD
>CP034660.1|AZQ85116.1|3394460_3394994_-|hypothetical-protein
MNLIKKLLKFALATLLLLLVAGAGYYFYDEYEQKKKDDFELSYATEKKWDWHDKYDRVQFRKINDESKTVLRKVNLDKKYVIYAYKNDDYSLSAKVQFMTECKSNKEITSSKKHSNGDYKTLKCNEKGSALNYNVKWNGIATDFTWEENLDGFALRENFTYWDFSILDQEVTLSKAK
>CP034660.1|AZQ85117.1|3395120_3395423_-|hypothetical-protein
MNNQPWVKIYDDEAWDDSIVGNREGLLALKQAIDDALENECVEVADRFQSDFGVVALSDQDWEQTEPQEVKGTWGVIVPFILFIWAVVLPLLAIYKLAFE
>CP034660.1|AZQ85118.1|3395564_3395897_-|hypothetical-protein
MFVFTGYGIITLLIGFASLVGFGVSLKNEFILQYLNSAEASSVICCIAAWVNARIGIFVNSKPGRILIDPKTMQQVELKERHTFFWLPMEYWSFVPILLGVFLSYNNIIK
>CP034660.1|AZQ85119.1|3396232_3396670_-|RidA-family-protein
MTLSLKSILMTAGVLILTACSTAPTIERKNYYAWENDYGYSQVVKVGNTLYISGIASDKTSFAAQIEEIYQYANKILQDYGVDSDAIVKQVIYTTDIEAMKTHTELRKSFFNKNKYPSASIIQVSRLYEEGHFLEVEIVAVIVSE
>CP034660.1|AZQ85120.1|3396831_3397299_-|nuclear-transport-factor-2-family-protein
MKKLLSMICCFLISTAALANESKIDLNEFAQQYFDIMIATQAPNATEQDLERYLALLTDDIGHSHLPYVTDDSRLKDGKQQMRKGMTFYLGAHSKYNAELLNVFVFNHSAIAIRYKNSAEGIHPESKQALSYTRTMMEVLEIEDGKVAVIRKYHE
>CP034660.1|AZQ85121.1|3397635_3398106_-|DNA-starvation/stationary-phase-protection-protein
MTDIDIGISKANRTEISDGLKRLLADSYTLYLQTHNFHWNVTGLQFRELHLMFEEHYTELAIAVDDIAERIRTLDVPAPGTYKEFAKLSSIKEVDGVPSSSEMVAILTKGHEQVIKTSREVLKIAQGADDESTASLVSDRMRIHEKTAWMLRATKK
>CP034660.1|AZQ85122.1|3398172_3398430_-|hypothetical-protein
MKRKLQSDDYLYPSHLKMQDSASRKRVSTKALIEENGCSIVEINNAGDDPLSPCPKGAKLENQLRVAALDKGITIVFVLRLDLIS
>CP034660.1|AZQ85123.1|3399457_3399958_-|PaaI-family-thioesterase
MNQTAFQDCYPEELSHCYGCGKNNNDGHQLKSYWHTEQGKISTETAEKTIAHFNPEPCHTAIPGFVYGGLIASIIDCHGTGSASAMAYRQEDRAMGSAPALRFVTAALNVSYLAPTPMGVELELIGTFTEVKAKKVVVEITVSANNVICAKGTVIAVKMPDTMIPA
>CP034660.1|AZQ85124.1|3400066_3401341_-|phenylacetate--CoA-ligase-family-protein
MTKYYHSNEQQDPQAREQSLFAKLPQFIADVEKNSLHYQELFAGIHGVTDASTINSRAQLAKLPITRKSELIALQKRRPPFAGINSRNGNIHRIFQSPGPIYDPESCQEDWWRMGQAFYAAGFVAGDLVQNCLSYHLTPGGFILDSGARACGCMVIPAGPGQTEQQLDIIEDLKPQGYCGTPSFLKILLNKAKEQNRDISSVKKALVTGEALPKGLREEFKNAGINVLQAYASADVGLIGYESIADDGLIISENLIVEIVRPGSLTPVADGEIGEVVVTSFNADYPLIRFATGDLSAVKVGKSACGRTNMRIKGWLGRADQTTKVKGMFVHPEQVERVRLIADCFPKARLTVTQQDHQDKMHLQCELGEDNAAAILTDTDKKQLLNQLADALKQFTKLNGSVELVARGSLPDDGKVIDDQRVIG
>CP034660.1|AZQ85125.1|3401694_3402516_-|ABC-transporter-ATP-binding-protein
MSQAATKLQPASPILTVNNIEVVYDEVIQVLRGVSLDVPEGDVVTLLGPNGAGKSTTLKAISGLLKTENGEVTKGDISFMGERIDSKNAEDVVRSGLFQVMEGRRIIEDMTSLENLKLGAFTRKDSQINQDIEMVYHYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMICLDEPSMGLSPLLVKEVFGIIKKINQDQGITMLLVEQNANYALRAANYGYIMESGKVVLDGTQEQLLNNEDVKEFYLGGGNDERKSFKGLKSYKRRKRWL

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Crispr_ID: CP034660_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034660_4

4103924-4104056

Orphan

Consensus_repeat	Method
GGATTTTGAATCCCCCATGTATACCAATTTCATCACGCTGGCATTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034660_4

>merge|CP034660|4|4103924-4104056|CRISPRCasFinder
GGATTTTGAATCCCCCATGTATACCAATTTCATCACGCTGGCATTTCTTCTTCTATAACATCAAAATTTATGCAGTCCGTGCAAAGGATTTTGAATCCCCCATGTATACCAATTTCATCACGCTGGCATTTCT

>CP034660|4|4|4103924-4104056|CRISPRCasFinder
GGATTTTGAATCCCCCATGTATACCAATTTCATCACGCTGGCATTTCT	TCTTCTATAACATCAAAATTTATGCAGTCCGTGCAAA
GGATTTTGAATCCCCCATGTATACCAATTTCATCACGCTGGCATTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP034660.1\|AZQ85655.1\|4106101_4107226_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
CP034660.1\|AZQ85657.1\|4109014_4109491_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
CP034660.1\|AZQ85645.1\|4096119_4097316_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|271177
CP034660.1\|AZQ85649.1\|4098940_4100026_-\|DUF4263-domain-containing-protein	unknown	unknown	gnl\|CDD\|372906
CP034660.1\|AZQ85660.1\|4114230_4114788_+\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|376823
CP034660.1\|AZQ85661.1\|4114994_4115660_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239323
CP034660.1\|AZQ85647.1\|4097738_4098047_+\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
CP034660.1\|AZQ85653.1\|4104394_4104895_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
CP034660.1\|AZQ85643.1\|4093546_4094884_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85646.1\|4097410_4097746_+\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85659.1\|4112692_4112902_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP034660.1\|AZQ85648.1\|4098072_4098591_+\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85662.1\|4115811_4117014_+\|putative-C-S-lyase	unknown	unknown	gnl\|CDD\|275146
CP034660.1\|AZQ85652.1\|4101895_4103176_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238828
CP034660.1\|AZQ85654.1\|4105034_4106105_-\|lipopolysaccharide-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP034660.1\|AZQ85650.1\|4100112_4100961_+\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85658.1\|4109513_4112384_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP034660.1\|AZQ85656.1\|4107478_4108984_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP034660.1\|AZQ85651.1\|4101152_4101869_-\|hypothetical-protein	unknown	unknown	unknown
CP034660.1\|AZQ85644.1\|4094867_4095950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377262

Protein	Function_ID	Function_description	E-value
CP034660.1\|AZQ85655.1\|4106101_4107226_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	9.57709e-126
CP034660.1\|AZQ85657.1\|4109014_4109491_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	1.50853e-46
CP034660.1\|AZQ85645.1\|4096119_4097316_+\|DUF4102-domain-containing-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.81472e-30
CP034660.1\|AZQ85649.1\|4098940_4100026_-\|DUF4263-domain-containing-protein	gnl\|CDD\|372906	pfam14082, DUF4263, Domain of unknown function (DUF4263). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 244 and 403 amino acids in length.	4.66549e-15
CP034660.1\|AZQ85660.1\|4114230_4114788_+\|OsmC-family-peroxiredoxin	gnl\|CDD\|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	2.69917e-23
CP034660.1\|AZQ85661.1\|4114994_4115660_+\|hypothetical-protein	gnl\|CDD\|239323	cd03025, DsbA_FrnE_like, DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	3.29867e-24
CP034660.1\|AZQ85647.1\|4097738_4098047_+\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	1.32854e-11
CP034660.1\|AZQ85653.1\|4104394_4104895_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	5.2108e-12
CP034660.1\|AZQ85659.1\|4112692_4112902_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.01309e-27
CP034660.1\|AZQ85656.1\|4107478_4108984_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP034660.1\|AZQ85662.1\|4115811_4117014_+\|putative-C-S-lyase	gnl\|CDD\|275146	TIGR04350, aminotransferase_class_I_and_II, putative C-S lyase. Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A).	1.83936e-129
CP034660.1\|AZQ85652.1\|4101895_4103176_-\|hypothetical-protein	gnl\|CDD\|238828	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).	7.7272e-27
CP034660.1\|AZQ85654.1\|4105034_4106105_-\|lipopolysaccharide-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP034660.1\|AZQ85658.1\|4109513_4112384_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP034660.1\|AZQ85644.1\|4094867_4095950_-\|hypothetical-protein	gnl\|CDD\|377262	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein.	2.02791e-17

>CP034660.1|AZQ85652.1|4101895_4103176_-|hypothetical-protein
MKFTKPHPWFRSRGYLHFDRPISFDTAKKIVTSPKKVASHSFYPLINYSVETKKIKQDKKTRAIETKLKERPISYSSHVDSHIYGYYANLLSSLYEKELSIRGLSDNVLAFRSLGKSNIEFAHEAFLSISDFGECGVVALDLSKFFDKLDHAILKEQWANLLGATKLSPDHFNVFKSLTKFSIVDKLELYGLLDISSNNPKNGRVRVCEPNDFRNKVRGSGLIKPNVHNYGIPQGSPISALLSNIYMIDFDSKMKAYVEKFNGKYFRYCDDMLFIVPIKERDKVAGDARLAIKDLKVDINVNKTELRTFKMNDDGVLHSEQPLQYLGFLFDGVNIYLRSTSLARYSERMRKGVRLAKATMRKRNHLKLERGDETKSLFKNKLYRKYSHLGSRNFVTYGLRAAKIMNSKTIKSQLKPLWKKLNDEME
>CP034660.1|AZQ85651.1|4101152_4101869_-|hypothetical-protein
MTNFTNLKNQSTHKYLFTLTSMRTKSRLEEFRSYTLQLEQKFDTDKQSVEESYHEAVNLIEHDEENDAHEYFGEMYQEIDSVNVPLFRSSTVVTMYSFLESSMNKLCRSLYKLKNYNIDLSELRGEGIVRAKSYLINFAGADFDVLNGDWSKLVALNLVRNCLVHNEGIINGSRSENKLKNTVEGTAGIYSNHYSEIIIEREYIDNCIDVIESFLLDLYNQLKDSEILDNVALVSQGN
>CP034660.1|AZQ85650.1|4100112_4100961_+|hypothetical-protein
MIGFMITNLITDDNEFLVNGKLGQWVFSKSPNYDDMVSPILTKGACGNTFSAELATLSHKSTDAEFSTCCDEIIDICLLLSFIQARCITPSGSSRFSDISFIQLGDDFIPARSIVGFPEIEVKTGFTNLFLDWKSSIHPTLNNKKLRLFLSHYLSGLTCFTLEDIFLSLGVQMDLIKQEEIKIKGQNMTYQDGMKSASARYGIIPLSPAYTKMRNDIVHEGVLSGKNFKNKSKEDCSKVIIDTLNWIDQYILAALNISQKITYSERWKTRNMLHGLPSISVR
>CP034660.1|AZQ85649.1|4098940_4100026_-|DUF4263-domain-containing-protein
MKISDFIFRAPSTSLSRYDLLCRVRFFVNKKYEIVAVLTDLGNKNPSSSVTNSVEEIIAGLYEIGFLTSKAIFLEHYEKGLMGNNTFDLVTIDENNSPSWKSLKFDSAIKLLDSEDDEFSKKSVEIKELFDQIEKLRHDMDPYMGIPHQENFEVILRREKILSNQVTKSALKNAIESGATETEIHKLILSDLSLLGDMYCQLPEEYICFSEFELNGGFVDFVVLSGRSRMTVTLIEIKGANYKLINSNSYEDFSAKTNQAVQQIRKRLGYIIRNIDEFRMNVHDLRDKVENGESIFDSFIGPEGKLQVDPNKDIYFHSIVIGGRSEDDYKESRLRHDYEERMSPPIRIESWDSWLKKVPRK
>CP034660.1|AZQ85648.1|4098072_4098591_+|hypothetical-protein
MATKNKIEGKKTGKDSTQEVTSTSNESINQTATEAGSSVETHIVLIDSKAAKLSTKKRGFVTFILATCIDSGELELRLTGNNGGGLHSKEWLSVTTIFEVLSLQALDKPFKSTVFKSVFKGASANNASFLAAVLRSKDINLIISTEKSQYLHMIPSNYESVRDQLLAKASAK
>CP034660.1|AZQ85647.1|4097738_4098047_+|DUF1232-domain-containing-protein
MAKLSHDKAWGKFKDIKGVKKLIEIALVLYALVLDGDTPLWVKTLAISALIYLISPVDAMPDFIPVSGLADDIGVLVAALASLQTQVKPHHRKQAQNLFNQL
>CP034660.1|AZQ85646.1|4097410_4097746_+|hypothetical-protein
MQLINHWPSESDISLPEQVKHALLTHLLEPFGDEESAKAFWHDYPSMIIIVKPIDSTSSLQWLNDELQHQVEFAQTSPEYSDTLVLGYSVKLSITSDAGNGLYLVVKDTNG
>CP034660.1|AZQ85645.1|4096119_4097316_+|DUF4102-domain-containing-protein
MQKKKFKFTNAAIRSLPANPVDSKSTECEYADTEIIGLKCLSGKSGNKRWMLRYTMEGRKHAISLGRFPDLDVTTARNIAKKHKVKIAEGINPKTQRDGYYGIPTVGEFFSQTYLPLAQKRKKSWNDDAQRFRDFCGCIATIPYDKLKAIDVQAIQNQMMVEVSGESKYKPATCNRAIALVKTMGSLAERLLDIPNVASRVSQLPENNMRTRFCSVDEVRRIIKESLAYHHKPIGAYIAMLFLTGCRASEMRLRKWKDINYQQRTLTIDKTKNGSPHVVYLTDMMMTILDDIPKVAGNEFIFAGTKKNRPVCASRWAFDLIKERAGIENPNEVVFHTARHSIASNLLSHATETHADIRSVQELLNHKSIQSTMRYAKLSIERQRQTSESMETLLENIQ
>CP034660.1|AZQ85644.1|4094867_4095950_-|hypothetical-protein
MHLSSSTLNRFIIHQLVKGESEPRIAKDILDLNDDVISSLAEKILELFEKKTSVIYGIFRSKTQKFPLELKKSYQDKVSDDDFIALTSSTMESMQLAMKNTAGTGGYITFIDYSKGINQYLLAVMIKNTKAFQLENLKPKEASRVDTTKLYQAININVQGYIKTFKAKDDEEIRSYVSFITKANEPSGYFLDAFSCKANVTPSKATTAAPKAAKEFLISCGVDKKIATKAYYDVVDLLIEHSEKPITISKIHRKVNEYIPHDLFEEKKDEFLAFSKDEAYQIPDEFLSKGKTATALRQIKGHGEGWELNFDKEMIGLKDKDVNKTFMYDMKNDFLYMPNLPEHLKDRILAELNIVNENDK
>CP034660.1|AZQ85643.1|4093546_4094884_-|hypothetical-protein
MKMINNIFVLDALIDLYEALPSPLIANNGTQIKVVEPFELTLEQSTSICKLLDTCPSISKFITFSADYQELNIKDNEVDINLFIGKEIETIKVGFPQRQGSIPDIYFYQDEYELVNSHAQLLSKGGSLPESFYLTNSNFKPSNGDNEKLSKIARILEWFCLFKDISNVDTPKDNSYELVFIEKAGDDKLTKPVHFLTEICAEMLDVLDVPPLGHFEELRKINDRTDTNKKEKQKFLRVAFVEVLRELRSNGQAEGEALKVARNIENIRNSYYEHLELFMEDFAISEFKREIEDARFSYIEKIEAVIGDIQGKLYAIPAAFIAIGAIARSQTFESTILIVFGAFFASALTFIMVKNQEGRAQYVDKSIDFVFDKLERRNVDDTEHYSIIKNIDDAKVSLVKMLETKKKYIKFYLFAAWLPFGTALIVAFSRHTSEFCNWFLNTILL
>CP034660.1|AZQ85653.1|4104394_4104895_+|RDD-family-protein
MSLTSNASFPRAGFRRRMASWLYDALIAIAVYMTAGAASFLIISLLVHFGAFDLQGYEHLSDAITNTYWLLLPNELWKLAWVAFFFIWFWSKSGQTLGMKAWRLKVQNQDGSLMTKTTAIKRLLPTLLGLGNFAVLVDRKNKLSIQDRLTDTEVVLLTLEANRGRL
>CP034660.1|AZQ85654.1|4105034_4106105_-|lipopolysaccharide-ABC-transporter-permease-LptG
MMRILDMYIGRVIASTTFLTLAVFVSLSGIIKFVEQIRSVGKGNYDIAHAALYVLYAIPQDVSLFFPMSALIGGLIGMGMMASSSELIVMQAAGLSRLDIIKSVMKSALLLIVVSMAVGEWLAPQGEAAARQVRAQAISGGSLISSTGGTWAKDGDYFVHIGEVQDQGSLKNIQIYRFNEQLKLSSWVSASSAVYQKNAWQLRDVIETKISAKEITKESQPVMSWSSTLTPDKLGVVTVKPESLSLRGLSDYLDYLEANKQDKSRYLLAFWRKIAQPFTLAVMLLVALSFIFGPLRSVSMGARIMMGVATGILFFIVNEVLGSLSLVYQLPAIFGAFMPSIIFVSIALYLMNRRAS
>CP034660.1|AZQ85655.1|4106101_4107226_-|LPS-export-ABC-transporter-permease-LptF
MIIFRYLLKEVAKTQLAVFLVIMTIFISNKFVRVLDDASEGGIPGHLVMTFIGLKIPDLAGMILPLSFFLGVLLAYGRIYAENEMTVLHACGVSEWYVVRVTLILGFVTAIITGIFTLYLSPMAAEYEYQVKDQIAADSGLSSLIAGRFQTTGNKKAVVFIHEKNRADNTLEKVFVAQLPDQDTPNASVIDSSLVYAATGQVVEEETGSQRLILSAGTRYQNDIKNKEFRQVAFDKYYIQIQDQKVEHKRRKLSAIPTAELYQEQSPEASAESQWRIAFPLVCIIMTLVAVPLSVVNPRQGKFGKMLPALLLFLSYFLLLTAVRSGIEKGSVPQHIGLWPVHFLVLILGFSLLFKGRKSGRLLKAKIAKNKEAT
>CP034660.1|AZQ85656.1|4107478_4108984_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSAIAEQLDEISEGYISNLLRRGDLEGKSGQMLLLHHVPNILSERVLLVGCGKERELDERQYRQIISKTINTLNETGSMEAVCFLSELHVKGRDTYWKVRQAIEATQDCLYSFNSLKTRKEEPRRPLRKIVFNVPTRRELPIGERAVNHALAIAEGITTCKNVANMPPNICNPAYLAEQARILDNDYDNVTTEIVDEKQMEELGMGSYLAVGRGSVNESLMSIIKYNGAGDDSKPLVLVGKGLTFDSGGISLKPGAGMDEMKYDMGGAAGVLGAMHALAELQLPINVIGVLAGCENMPSSNAYRPGDILTTMSGQTVEVLNTDAEGRLVLCDALTYVERFDPELVIDVATLTGACVVALGAHATGLLSSHNPLAHELLNASEQSGDRAWRLPLWDDYQDQLESPFADFTNLGGKEAGTITAACFLARFTKKYNWAHLDIAGTAWRGGKNKGSTGRPVSMLTQFLLNRAGAEQGE
>CP034660.1|AZQ85657.1|4109014_4109491_+|DNA-polymerase-III-subunit-chi
MQTQAMFYSIEEESKVAGVSDEQLHLHYACLQAAYFYRQNQRVFIYTQDQESAHNIDEMLWAFDPDSFVPHNLIGEGPKQGAAVEISWQLPTNRRAVLINLTSDVPNFASQFSHLIDFVPADETLKEQARNRFRTCRQWGFNVAHQVASAPQTIDTTS
>CP034660.1|AZQ85658.1|4109513_4112384_+|valine--tRNA-ligase
MEKTFTPSDIEQSLYKSWEEQGYFSPTGEGDSYSIAIPPPNVTGSLHMGHAFQQTIMDTLIRYQRMQGKNTLWQTGCDHAGIATQMVVERKIAAEEDKTRHDYGREGFIDKIWEWKEESGGTIGKQMRRLGNSIDWSRERFTMDDGMSEAVQEVFVRLFEDDLIYRGKRLVNWDPKFHTAISDLEVENKDKKGHMWHLRYPLADGAKTADGLDYLVVATTRPETMLGDTGIAVNPEDPRYKDLIGKQVLLPLVNRLIPIVGDDHADMEKGTGCVKITPAHDFNDNEVGKRHQLPQINIFDKDAAVLAAAEVYDTKGEVCDAYSTELPAEFAGMDRFVARKAIVAKFDELGLLVEVKEHDLVAPYGDRSGVIIEPLLTDQWYVRVEKLAGPAVDAVKDGQIEFVPKQYENMYFAWMNNIQDWCISRQLWWGHRIPAWYDENGKVYVGRTEAEVRANNTISDDMKLRQDDDVLDTWFSSALWTFSTLGWPKETEDLKTFHPTDVLVTGFDIIFFWVARMIMMTMHFNKDENGKAQIPFKKVYMTGLIRDENGDKMSKSKGNVVDPLDMIDGISLEDLLQKRTGNMMQPKLAAKIEKLTRKEYPNGIEAHGTDALRFTLTSVATTGRDISWDMKRLEGYRNFTNKLWNASRYVMMNTEEFDCGRSSANEPAGAMEFSLADRWIMGQFQQTVKTVHEAFDSYRFDLASQALYEFTWNQFCDWYLELTKPVLFKGSEAQQRGTRHTLVTVLEALLRLMHPIMPFITETIWQRVVPLTNFEKTGDSIMIQSFPQFDESQCDQTAIGDLEWVKQFIVAIRNIRGEMDIAPSKPLPVLLKNVNADDQRRLSENEQFISALAKLESITVLANDDNGPASATAVVGDLSVLIPMAGLIDKDAELARLDKAIDKLTKDADRVRGKLSNANFVDKAPEAVINKEKAKLAEAESTLAKMVDQKIQIADM
>CP034660.1|AZQ85659.1|4112692_4112902_+|cold-shock-protein
MSDTVTGKVKFFNESKGFGFIEQENGADVFVHFSAISGDGFRTLTDGQAVTFSVKQGQKGPEAENVVAS
>CP034660.1|AZQ85660.1|4114230_4114788_+|OsmC-family-peroxiredoxin
MTDLTKPFADINAIRDTQEAVRKQPELGKVTFKVSGKSTGGLSLLSQTGSLIQNGEADKSRDGQYKMICDEPIALLGTDTGVSPAEYILQGLAGCYTVTLASMAASKGITLDSISLNLDFDIDLNGFLGLNPDVRNGAEEIRVDVDLKSESATQEELKDLIEQIPFNSPIHDTLANPVRIKPRLV
>CP034660.1|AZQ85661.1|4114994_4115660_+|hypothetical-protein
MKHQVYYITDTYCCWCFGFSKTINAIEKNYANQVQINVLNGVMVSQDMSLYNFFNRFPDPIGLHSHISEKSGQSFGSNYLDLIRNLKSSNRILNSNVPAKAMIAFKQLGVSELAATTKIQDAHYSDGIDIQRIESYEEISKKLSVPFDKFKEFYYDENCTITLNNELSMIRQLGISGFPAVLIKTKDDNFKVISNGFVSYDDLRSRLNKELEIDTDACIEN
>CP034660.1|AZQ85662.1|4115811_4117014_+|putative-C-S-lyase
MEYDFQKIIDRKGTNALNSDGYRKYLFGESETLPENDHIDNLIPMWVADMNFAVAPEILDSIKERLDHGILGYTQIFDNAYYDSFTHWVSSQYKWDVNIEHIVTSNGIIPALYDLVRLLSKPDEKILFLTPSYGFFKKAAEYSDREYIASDLINTNGNYSIDFDDIREKCARDDVSMCILCNPHNPTGRAWTESELKEFGTICIENNVLIISDDIHCDLTRKNVKYTPLAKLFPNSDKVITCMAPSKTFNLAGLMMSNLVIPSDSIRKLWNADHLPFVNPLSACAVEAAYTHGHEWLDQLTEHLDANFAYLYSYLMENLPLAKFTIPESTYLAWIDISEYFDENENLTKFFIEKAGVIVEGGEMFVSKNNGFIRLNLAHPKHTVVQGISKISEAIKKYKL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3609314 : 3617412

Vibrio_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ85262.1\|3609314_3610235_+	recombination-associated protein RdgC	A0A067ZG66	Vibrio_phage	2.6e-69	44.6
AZQ85263.1\|3610382_3611225_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	5.5e-42	36.1
AZQ85264.1\|3611462_3612824_+	U32 family peptidase	Q6DW11	Phage_TP	1.7e-130	64.7
AZQ85265.1\|3612826_3613072_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	3.4e-21	54.1
AZQ85266.1\|3613157_3613991_-	thymidylate synthase	A0A2R4A1R4	Microbacterium_phage	6.3e-99	61.5
AZQ85267.1\|3614188_3614983_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AZQ85268.1\|3615132_3617412_-	phosphoenolpyruvate-protein phosphotransferase PtsP	A0A1V0SGR7	Hokovirus	2.2e-13	30.4

DBSCAN-SWA_2

3836808 : 3843294

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZQ85436.1\|3836808_3837909_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	1.5e-79	45.0
AZQ85437.1\|3837943_3838822_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.0e-35	36.6
AZQ85438.1\|3838880_3839426_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	9.3e-51	54.8
AZQ85439.1\|3839425_3840304_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.4e-93	56.8
AZQ85440.1\|3840375_3841386_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.2e-89	50.8
AZQ85441.1\|3841475_3842435_-	DHH family phosphoesterase	NA	NA	NA	NA
AZQ85442.1\|3842685_3843294_-	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	9.8e-25	45.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034660

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection