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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP033902 Trueperella pyogenes strain TP1 chromosome, complete genome 1 crisprs cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3 0 21 3 0

Results visualization

1. CP033902
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033902_1 47351-52564 TypeI-E I-E
85 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 NZ_CP050095 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence 199540-199564 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 NC_008381 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence 410084-410108 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 NZ_CP053443 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence 169650-169674 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 220289-220313 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 MT104473 Pseudomonas phage MR13, complete genome 26130-26154 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 MT104475 Pseudomonas phage MR15, complete genome 26188-26212 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 KJ507100 Pseudomonas phage phiPSA1, complete genome 26922-26946 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 NZ_CP021032 Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence 140096-140120 4 0.84
CP033902_3 3.3|73912|25|CP033902|CRISPRCasFinder 73912-73936 25 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 152463-152487 4 0.84
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP012916 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence 707039-707071 5 0.848
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP032341 Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence 341568-341600 5 0.848
CP033902_1 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50246-50278 33 NZ_CP053709 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence 125729-125761 5 0.848
CP033902_1 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50246-50278 33 NZ_CP053712 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence 120345-120377 5 0.848
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 893346-893378 6 0.818
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 210403-210435 6 0.818
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 516650-516682 6 0.818
CP033902_1 1.55|50673|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50673-50705 33 NZ_CP025615 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed3, complete sequence 47568-47600 6 0.818
CP033902_1 1.9|47867|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 47867-47899 33 JN700521 Staphylococcus phage StB20, complete genome 40861-40893 7 0.788
CP033902_1 1.76|51955|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 51955-51987 33 MT952845 Microbacterium phage GardenState, complete genome 10836-10868 7 0.788
CP033902_1 1.76|51955|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 51955-51987 33 MK880124 Microbacterium phage IAmGroot, complete genome 11480-11512 7 0.788
CP033902_1 1.79|52138|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 52138-52170 33 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1826356-1826388 7 0.788
CP033902_1 1.81|52260|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 52260-52292 33 MT778838 Rhizobium phage V1VFA-S, complete genome 43693-43725 7 0.788
CP033902_1 1.19|48477|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48477-48509 33 NZ_CP039340 Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence 568615-568647 8 0.758
CP033902_1 1.19|48477|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48477-48509 33 NC_041927 Sphingobium phage Lacusarx, complete genome 39353-39385 8 0.758
CP033902_1 1.30|49148|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49148-49180 33 MH673674 Thermus phage phiMa, complete genome 51513-51545 8 0.758
CP033902_1 1.46|50124|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50124-50156 33 NZ_CP038146 Streptomyces sp. S501 plasmid unnamed, complete sequence 59205-59237 8 0.758
CP033902_1 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50246-50278 33 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 1401008-1401040 8 0.758
CP033902_1 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50246-50278 33 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 446573-446605 8 0.758
CP033902_1 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50246-50278 33 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 40106-40138 8 0.758
CP033902_1 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 50246-50278 33 NC_013856 Azospirillum sp. B510 plasmid pAB510b, complete sequence 579189-579221 8 0.758
CP033902_1 1.57|50795|33|CP033902|CRISPRCasFinder,CRT 50795-50827 33 NZ_CP034813 Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence 80651-80683 8 0.758
CP033902_1 1.57|50795|33|CP033902|CRISPRCasFinder,CRT 50795-50827 33 NC_017536 Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence 102564-102596 8 0.758
CP033902_1 1.57|50795|33|CP033902|CRISPRCasFinder,CRT 50795-50827 33 NC_015689 Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence 102566-102598 8 0.758
CP033902_1 1.63|51161|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 51161-51193 33 NZ_CP038146 Streptomyces sp. S501 plasmid unnamed, complete sequence 59205-59237 8 0.758
CP033902_1 1.13|48111|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48111-48143 33 MN693797 Marine virus AFVG_250M732, complete genome 20271-20303 9 0.727
CP033902_1 1.13|48111|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48111-48143 33 NC_021077 Comamonas sp. 7D-2 plasmid pBHB, complete sequence 14583-14615 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MN284907 Gordonia phage Fireball, complete genome 33706-33738 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MH479910 Gordonia phage Danyall, complete genome 33564-33596 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MT639651 Gordonia phage Portcullis, complete genome 33083-33115 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MH479917 Gordonia phage KimmyK, complete genome 34297-34329 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MH669015 Gordonia phage TillyBobJoe, complete genome 33376-33408 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MK814761 Gordonia phage SmokingBunny, complete genome 33572-33604 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 KX557286 Gordonia phage Twister6, complete genome 33475-33507 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MT310872 Gordonia phage Evamon, complete genome 33583-33615 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MT521998 Gordonia phage Jambalaya, complete genome 33362-33394 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 NC_030913 Gordonia phage Wizard, complete genome 33715-33747 9 0.727
CP033902_1 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48294-48326 33 MN010760 Gordonia phage Nubi, complete genome 33586-33618 9 0.727
CP033902_1 1.58|50856|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 50856-50888 33 MK599416 Salmonella phage Akira, complete genome 33925-33957 9 0.727
CP033902_1 1.83|52382|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 52382-52414 33 MT522006 Gordonia phage BBQValindra, complete genome 7231-7263 9 0.727
CP033902_1 1.85|52504|33|CP033902|CRISPRCasFinder,CRT 52504-52536 33 NZ_CP042262 Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence 29383-29415 9 0.727
CP033902_1 1.24|48782|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48782-48814 33 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2232613-2232645 10 0.697
CP033902_1 1.29|49087|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49087-49119 33 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1005870-1005902 10 0.697
CP033902_1 1.57|50795|33|CP033902|CRISPRCasFinder,CRT 50795-50827 33 NZ_CP045288 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence 74397-74429 10 0.697
CP033902_1 1.81|52260|33|CP033902|CRISPRCasFinder,CRT,PILER-CR 52260-52292 33 NC_047815 Erwinia phage vB_EamM_Yoloswag, complete genome 213887-213919 10 0.697
CP033902_1 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48660-48692 33 KY883658 Vibrio phage JSF27, complete genome 34376-34408 11 0.667
CP033902_1 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48660-48692 33 KY883657 Vibrio phage JSF23, complete genome 11721-11753 11 0.667
CP033902_1 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48660-48692 33 MT066160 Vibrio phage Saratov-12, complete genome 47367-47399 11 0.667
CP033902_1 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48660-48692 33 NC_015158 Vibrio phage ICP2, complete genome 34014-34046 11 0.667
CP033902_1 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48660-48692 33 KM224878 Vibrio phage ICP2_2011_A, complete genome 33172-33204 11 0.667
CP033902_1 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 48660-48692 33 MT767883 Vibrio phage Saratov-15, complete genome 2716-2748 11 0.667
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP050082 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence 20176-20208 11 0.667
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP049732 Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence 19130-19162 11 0.667
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP030764 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence 555720-555752 11 0.667
CP033902_1 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT 49880-49912 33 NZ_CP053208 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence 19128-19160 11 0.667

1. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cccccaagccgaacgagcggcagcc	Protospacer
. *************** ******.

2. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
ctcccaagccgaacgagcggcagcc	Protospacer
. *************** ******.

3. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cccccaagccgaacgagcggcagcc	Protospacer
. *************** ******.

4. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cgccgaagccgaacgagcggcagcc	Protospacer
.*** ************ ******.

5. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to MT104473 (Pseudomonas phage MR13, complete genome) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
agcccaagccgaacgcgaagcagca	Protospacer
 ************** **.***** 

6. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to MT104475 (Pseudomonas phage MR15, complete genome) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
agcccaagccgaacgcgaagcagca	Protospacer
 ************** **.***** 

7. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to KJ507100 (Pseudomonas phage phiPSA1, complete genome) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
agcccaagccgaacgcgaagcagca	Protospacer
 ************** **.***** 

8. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cgccgaagccgaacgagcggcagcc	Protospacer
.*** ************ ******.

9. spacer 3.3|73912|25|CP033902|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cgccgaagccgaacgagcggcagcc	Protospacer
.*** ************ ******.

10. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 5, identity: 0.848

caatcaccgcaaccggcgtgatcgac---gtgcgtg	CRISPR spacer
cgatcaccgcatccggcgtgatcgacagggtgc---	Protospacer
*.********* **************   ****   

11. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.848

caatcaccgcaaccggcgtgatcgac---gtgcgtg	CRISPR spacer
cgatcaccgcatccggcgtgatcgacagggtgc---	Protospacer
*.********* **************   ****   

12. spacer 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.848

--ggtcggccgcgcgggcgtcgcgaatggcggtga	CRISPR spacer
gccgtcgg--gcgcggacgtcgcgaatggcgatga	Protospacer
   *****  ******.**************.***

13. spacer 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 5, identity: 0.848

--ggtcggccgcgcgggcgtcgcgaatggcggtga	CRISPR spacer
gccgtcgg--gcgcggacgtcgcgaatggcgatga	Protospacer
   *****  ******.**************.***

14. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.818

caatcaccgcaaccggcgtgatcgac---gtgcgtg	CRISPR spacer
cgatcaccgtatccggcgtgatcgacagggtgc---	Protospacer
*.*******.* **************   ****   

15. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.818

caatcaccgcaaccggcgtgatcgac---gtgcgtg	CRISPR spacer
cgatcaccgtatccggcgtgatcgacagggtgc---	Protospacer
*.*******.* **************   ****   

16. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 6, identity: 0.818

caatcaccgcaaccggcgtgatcgac---gtgcgtg	CRISPR spacer
cgatcaccgtatccggcgtgatcgacagggtgc---	Protospacer
*.*******.* **************   ****   

17. spacer 1.55|50673|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025615 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.818

caattgcaggcggcggctggtgtggccaaaccg	CRISPR spacer
ctattgcaggcggcggccggtgtggcaaggcca	Protospacer
* ***************.******** *..**.

18. spacer 1.9|47867|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to JN700521 (Staphylococcus phage StB20, complete genome) position: , mismatch: 7, identity: 0.788

gaagaaccgtcgaattcgacggttttagtttgt	CRISPR spacer
tagaacccgtcgaattcgacgggtttagattat	Protospacer
 *..* **************** ***** **.*

19. spacer 1.76|51955|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to MT952845 (Microbacterium phage GardenState, complete genome) position: , mismatch: 7, identity: 0.788

cgcttgcgctcatcatggagcaaacaacggata	CRISPR spacer
cgctcgcgctcatcatggagcagaccgccgacg	Protospacer
****.*****************.** .* **..

20. spacer 1.76|51955|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to MK880124 (Microbacterium phage IAmGroot, complete genome) position: , mismatch: 7, identity: 0.788

cgcttgcgctcatcatggagcaaacaacggata	CRISPR spacer
cgctcgcgctcatcatggagcagaccgccgacg	Protospacer
****.*****************.** .* **..

21. spacer 1.79|52138|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.788

gcaaagcacgcacgcgccgtttcgaagcaacca	CRISPR spacer
gcaaagccggcacgcgccgtttcgaaatcgcga	Protospacer
*******  *****************.. .* *

22. spacer 1.81|52260|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to MT778838 (Rhizobium phage V1VFA-S, complete genome) position: , mismatch: 7, identity: 0.788

ccgtccgcaccaagacagaagcccgccaactcc--	CRISPR spacer
ccgcccgcaccaagacggaagcc--ccggcgcctg	Protospacer
***.************.******  **..* **  

23. spacer 1.19|48477|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.758

ctccccggcaaggtagtctccgcgatcggtaat	CRISPR spacer
ttcgccggcaaggttgtctccgcgatacttcag	Protospacer
.** ********** ***********   * * 

24. spacer 1.19|48477|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NC_041927 (Sphingobium phage Lacusarx, complete genome) position: , mismatch: 8, identity: 0.758

ctccccggcaaggtagtctccgcgatcggtaat	CRISPR spacer
gtgcccggcaaggcaggctccgcgatcgacatc	Protospacer
 * **********.** ***********..* .

25. spacer 1.30|49148|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MH673674 (Thermus phage phiMa, complete genome) position: , mismatch: 8, identity: 0.758

cgagctgcaagaggagcgggagaaagcgaacgc	CRISPR spacer
ggagctggaaaaggagcgggagaaaaagctagc	Protospacer
 ****** **.**************. *   **

26. spacer 1.46|50124|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038146 (Streptomyces sp. S501 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcacggtcgcatgctgagcgggctggtgagagc	CRISPR spacer
ccccggtcgcatgctcagccggctggtgatgag	Protospacer
 * ************ *** ********* .. 

27. spacer 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 8, identity: 0.758

ggtcggccgcgcgggcgtcgcgaatggcggtga	CRISPR spacer
ctgcggccgcgccggcttcgcgaatggcgaggt	Protospacer
   ********* *** ************. * 

28. spacer 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

ggtcggccgcgcgggcgtcgcgaatggcggtga	CRISPR spacer
cggccgtggcgcgggcgtcgcccatggcggtgt	Protospacer
 * * *. *************  ********* 

29. spacer 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

ggtcggccgcgcgggcgtcgcgaatggcggtga	CRISPR spacer
cggccgtggcgcgggcgtcgcccatggcggtgt	Protospacer
 * * *. *************  ********* 

30. spacer 1.48|50246|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

ggtcggccgcgcgggcgtcgcgaatggcggtga	CRISPR spacer
gcgccaccgcgcgggcatcgcgcatggcggcgg	Protospacer
*  * .**********.***** *******.*.

31. spacer 1.57|50795|33|CP033902|CRISPRCasFinder,CRT matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

ggacatc----ccgagctcgtccctgcgcgcggcaag	CRISPR spacer
----gtcgcagtcgaaatcgtccctgcgcgcggcaag	Protospacer
    .**    .***. ********************

32. spacer 1.57|50795|33|CP033902|CRISPRCasFinder,CRT matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 8, identity: 0.758

ggacatcccgagctcgtccctgcgcgcggcaag	CRISPR spacer
tgggaggctgagctcgacgctgcgcgcggcaag	Protospacer
 *. *  *.******* * **************

33. spacer 1.57|50795|33|CP033902|CRISPRCasFinder,CRT matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 8, identity: 0.758

ggacatcccgagctcgtccctgcgcgcggcaag	CRISPR spacer
tgggaggctgagctcgacgctgcgcgcggcaag	Protospacer
 *. *  *.******* * **************

34. spacer 1.63|51161|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038146 (Streptomyces sp. S501 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcacggtcgcatgctgagcgggctggtgagagc	CRISPR spacer
ccccggtcgcatgctcagccggctggtgatgag	Protospacer
 * ************ *** ********* .. 

35. spacer 1.13|48111|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MN693797 (Marine virus AFVG_250M732, complete genome) position: , mismatch: 9, identity: 0.727

ttgcctggcgggcgaggcgcccgctatcgacgg	CRISPR spacer
ctgcctggcgggcgaggcggccccttccgggca	Protospacer
.****************** ** ** .**.  .

36. spacer 1.13|48111|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NC_021077 (Comamonas sp. 7D-2 plasmid pBHB, complete sequence) position: , mismatch: 9, identity: 0.727

ttgcctggcgggcgaggcgcccgctatcgacgg	CRISPR spacer
ttggctggcgggcgtggcgcccgcgccggaaat	Protospacer
*** ********** *********  . ** . 

37. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

38. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

39. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

40. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

41. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MH669015 (Gordonia phage TillyBobJoe, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

42. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

43. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

44. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

45. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MT521998 (Gordonia phage Jambalaya, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

46. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

47. spacer 1.16|48294|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccttggaggcatccaccgtcccgtcaagg	CRISPR spacer
tgcaccttggacgcatccgccgtccggacggtt	Protospacer
.********** ******.****** * *..  

48. spacer 1.58|50856|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to MK599416 (Salmonella phage Akira, complete genome) position: , mismatch: 9, identity: 0.727

ctttttagcctgcgaccttctggtcgagcacga	CRISPR spacer
cttttttgtctgcgaccttctggtctgcgattg	Protospacer
****** *.**************** .  *. .

49. spacer 1.83|52382|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to MT522006 (Gordonia phage BBQValindra, complete genome) position: , mismatch: 9, identity: 0.727

--cagctagccgccggactgggcgacatcctttcc	CRISPR spacer
ctcgaccg--cgccggagtgggcgacatcctgtcg	Protospacer
  *..*..  ******* ************* ** 

50. spacer 1.85|52504|33|CP033902|CRISPRCasFinder,CRT matches to NZ_CP042262 (Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

cctggaagacgccgacctgtggggtgctgacct	CRISPR spacer
gatccgtgacgccgacctgtggcgtgccgacat	Protospacer
  *  . *************** ****.*** *

51. spacer 1.24|48782|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.697

cgcgaccccctcaccgtcaacgacgactcctta	CRISPR spacer
atcgacccccacaccgtcaccgacgaacaagtc	Protospacer
  ******** ******** ****** .   * 

52. spacer 1.29|49087|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 10, identity: 0.697

ccgggccatggccgccctgcacgataacacccc	CRISPR spacer
cccggccatggccgccctgctcgaccatctgga	Protospacer
** ***************** ***. *. .   

53. spacer 1.57|50795|33|CP033902|CRISPRCasFinder,CRT matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 10, identity: 0.697

ggacatcccgagctcgtccctgcgcgcggcaag	CRISPR spacer
ctcgacgacgagctcttccctgcccgcggcaac	Protospacer
    *.  ******* ******* ******** 

54. spacer 1.81|52260|33|CP033902|CRISPRCasFinder,CRT,PILER-CR matches to NC_047815 (Erwinia phage vB_EamM_Yoloswag, complete genome) position: , mismatch: 10, identity: 0.697

ccgtccgcaccaagacagaagcccgccaactcc	CRISPR spacer
gtacacgcaccaagacagaaggcagccaataac	Protospacer
 ... **************** * *****.  *

55. spacer 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to KY883658 (Vibrio phage JSF27, complete genome) position: , mismatch: 11, identity: 0.667

ccctgaaccctctgatttagggttggcagagaa	CRISPR spacer
ggatgaaccctctgctttagagttggctccatc	Protospacer
   *********** *****.******   .  

56. spacer 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to KY883657 (Vibrio phage JSF23, complete genome) position: , mismatch: 11, identity: 0.667

ccctgaaccctctgatttagggttggcagagaa	CRISPR spacer
ggatgaaccctctgctttagagttggctccatc	Protospacer
   *********** *****.******   .  

57. spacer 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MT066160 (Vibrio phage Saratov-12, complete genome) position: , mismatch: 11, identity: 0.667

ccctgaaccctctgatttagggttggcagagaa	CRISPR spacer
ggatgaaccctctgctttagagttggctccatc	Protospacer
   *********** *****.******   .  

58. spacer 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NC_015158 (Vibrio phage ICP2, complete genome) position: , mismatch: 11, identity: 0.667

ccctgaaccctctgatttagggttggcagagaa	CRISPR spacer
ggatgaaccctctgctttagagttggctccatc	Protospacer
   *********** *****.******   .  

59. spacer 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to KM224878 (Vibrio phage ICP2_2011_A, complete genome) position: , mismatch: 11, identity: 0.667

ccctgaaccctctgatttagggttggcagagaa	CRISPR spacer
ggatgaaccctctgctttagagttggctccatc	Protospacer
   *********** *****.******   .  

60. spacer 1.22|48660|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to MT767883 (Vibrio phage Saratov-15, complete genome) position: , mismatch: 11, identity: 0.667

ccctgaaccctctgatttagggttggcagagaa	CRISPR spacer
ggatgaaccctctgctttagagttggctccatc	Protospacer
   *********** *****.******   .  

61. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 11, identity: 0.667

caatcaccgcaaccggcgtgatcgacgtgcgtg	CRISPR spacer
gccgtgccgcacccggcgcgatcgacgtgctga	Protospacer
    ..***** ******.***********  .

62. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 11, identity: 0.667

caatcaccgcaaccggcgtgatcgacgtgcgtg	CRISPR spacer
gccgtgccgcacccggcgcgatcgacgtgctga	Protospacer
    ..***** ******.***********  .

63. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.667

caatcaccgcaaccggcgtgatcgacgtgcgtg	CRISPR spacer
gccgggccgcacccggcgcgatcgacgtgctga	Protospacer
     .***** ******.***********  .

64. spacer 1.42|49880|33|CP033902|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 11, identity: 0.667

caatcaccgcaaccggcgtgatcgacgtgcgtg	CRISPR spacer
gccgtgccgcacccggcgcgatcgacgtgctga	Protospacer
    ..***** ******.***********  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1194412 : 1208460 13 Streptomyces_phage(11.11%) NA NA
DBSCAN-SWA_2 2253947 : 2285828 33 Erysipelothrix_phage(50.0%) protease,head,terminase,transposase,capsid,integrase,tail,portal,holin attL 2261796:2261855|attR 2291795:2292674
DBSCAN-SWA_3 2291035 : 2305805 14 Erysipelothrix_phage(33.33%) transposase,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage