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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP028313 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 plasmid pSH-04-2, complete sequence 0 crisprs NA 0 0 0 0
CP028312 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 plasmid pSH-04-1, complete sequence 0 crisprs DEDDh 0 0 2 0
CP028311 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 chromosome, complete genome 4 crisprs PD-DExK,csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG 0 26 10 0

Results visualization

1. CP028312
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 11909 : 53601 47 Enterobacteria_phage(16.67%) transposase,integrase attL 35224:35240|attR 60896:60912
DBSCAN-SWA_2 85518 : 92353 11 Stx2-converting_phage(50.0%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP028311
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028311_2 967713-968717 TypeI-E I-E
16 spacers
cas3,cas8e,cse2gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028311_3 984974-986107 TypeI-E I-E
18 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028311_4 986181-986636 TypeI-E I-E
7 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028311_5 1177649-1177758 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP028311_3 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985985-986016 32 MT774487 Salmonella phage MG40, complete genome 21746-21777 6 0.812
CP028311_3 3.3|985125|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985125-985156 32 DQ838728 Lactococcus phage P335, complete genome 1117-1148 7 0.781
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 MH509446 Gordonia phage DelRio, complete genome 6223-6260 7 0.816
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 325874-325911 7 0.816
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NC_019201 Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence 248-285 7 0.816
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NZ_CP031397 Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence 50725-50756 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NZ_CP019854 Borreliella burgdorferi plasmid lp54, complete sequence 50437-50468 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NZ_CP019765 Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence 50437-50468 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NC_011784 Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence 50424-50455 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NZ_CP017218 Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence 3204-3235 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NC_013130 Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence 50571-50602 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NC_013129 Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence 49716-49747 7 0.781
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NC_001857 Borreliella burgdorferi B31 plasmid lp54, complete sequence 50444-50475 7 0.781
CP028311_3 3.12|985680|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985680-985711 32 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29079 7 0.781
CP028311_3 3.12|985680|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985680-985711 32 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142294-142325 7 0.781
CP028311_3 3.14|985802|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985802-985833 32 NZ_CP054841 Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence 535406-535437 7 0.781
CP028311_3 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985985-986016 32 JQ288021 Salmonella phage SPN3UB, complete genome 39452-39483 7 0.781
CP028311_3 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985985-986016 32 MH370364 Salmonella phage S107, complete genome 29959-29990 7 0.781
CP028311_3 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985985-986016 32 MH370382 Salmonella phage S135, complete genome 29959-29990 7 0.781
CP028311_3 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985985-986016 32 MH370383 Salmonella phage S137, complete genome 29959-29990 7 0.781
CP028311_4 4.1|986210|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 986210-986241 32 NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 188177-188208 7 0.781
CP028311_4 4.1|986210|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 986210-986241 32 CP013931 Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence 192938-192969 7 0.781
CP028311_4 4.1|986210|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 986210-986241 32 NC_019394 Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence 188204-188235 7 0.781
CP028311_2 2.1|967742|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967742-967773 32 NZ_CP014942 Rhodococcus sp. BH4 plasmid, complete sequence 462005-462036 8 0.75
CP028311_2 2.9|968230|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968230-968261 32 CP001770 Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence 145771-145802 8 0.75
CP028311_2 2.10|968291|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968291-968322 32 LQ277707 Sequence 2 from Patent WO2016071503 12422-12453 8 0.75
CP028311_2 2.10|968291|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968291-968322 32 LZ998055 JP 2017534684-A/2: Phage Therapy 12422-12453 8 0.75
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 1098771-1098802 8 0.75
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NZ_CP014128 Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence 160189-160220 8 0.75
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NC_014561 Pantoea vagans C9-1 plasmid pPag1, complete sequence 156443-156474 8 0.75
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 137983-138014 8 0.75
CP028311_3 3.3|985125|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985125-985156 32 NC_014754 Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence 76425-76456 8 0.75
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 336385-336422 8 0.789
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 619925-619962 8 0.789
CP028311_3 3.9|985497|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985497-985528 32 AP013976 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS *** 6246-6277 8 0.75
CP028311_3 3.9|985497|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985497-985528 32 JX536274 Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence 3959-3990 8 0.75
CP028311_3 3.13|985741|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985741-985772 32 NZ_CP016179 Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence 203354-203385 8 0.75
CP028311_4 4.2|986271|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 986271-986302 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
CP028311_4 4.2|986271|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 986271-986302 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
CP028311_4 4.6|986515|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 986515-986546 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
CP028311_2 2.2|967803|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967803-967834 32 NZ_CP021372 Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence 353298-353329 9 0.719
CP028311_2 2.2|967803|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967803-967834 32 AM749121 Streptococcus phage M102 complete genome 7893-7924 9 0.719
CP028311_2 2.2|967803|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967803-967834 32 NC_012884 Streptococcus phage M102, complete genome 7893-7924 9 0.719
CP028311_2 2.5|967986|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967986-968017 32 MN693046 Marine virus AFVG_25M413, complete genome 4323-4354 9 0.719
CP028311_2 2.5|967986|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967986-968017 32 MN693008 Marine virus AFVG_117M9, complete genome 4316-4347 9 0.719
CP028311_2 2.7|968108|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968108-968139 32 MN694645 Marine virus AFVG_250M761, complete genome 31050-31081 9 0.719
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 MN062720 Microbacterium phage FuzzBuster, complete genome 19374-19405 9 0.719
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NZ_CP045722 Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence 332-363 9 0.719
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NZ_CP022519 Pantoea vagans strain FBS135 plasmid pPant3, complete sequence 62976-63007 9 0.719
CP028311_2 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968413-968444 32 NZ_CP028351 Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence 144976-145007 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP043846 Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence 16198-16229 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP034117 Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence 10125-10156 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP034114 Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence 2991-3022 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP017904 Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence 177881-177912 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP017901 Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence 183537-183568 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP026804 Shigella flexneri strain 89-141 plasmid unnamed1 244387-244418 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP017909 Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence 180101-180132 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP017893 Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence 161475-161506 9 0.719
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP017898 Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence 182902-182933 9 0.719
CP028311_3 3.3|985125|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985125-985156 32 NC_013857 Azospirillum sp. B510 plasmid pAB510c, complete sequence 527800-527831 9 0.719
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NZ_CP050083 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence 24080-24111 9 0.719
CP028311_3 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985558-985589 32 MT162468 Synechococcus phage S-H25, complete genome 69929-69960 9 0.719
CP028311_3 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985985-986016 32 MK448228 Klebsiella phage ST15-VIM1phi2.1, complete genome 32866-32897 9 0.719
CP028311_2 2.3|967864|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 967864-967895 32 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1134787-1134818 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 NZ_CP019257 Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence 20006-20037 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 NZ_CP019274 Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence 9024-9055 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 NZ_CP019275 Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence 27130-27161 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 NZ_CP019279 Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence 19363-19394 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 23427-23458 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 NC_049342 Escherichia phage 500465-1, complete genome 24342-24373 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 KY271398 Klebsiella phage 4 LV-2017, complete genome 28240-28271 10 0.688
CP028311_2 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968169-968200 32 CP025900 Escherichia phage sp., complete genome 24342-24373 10 0.688
CP028311_2 2.13|968474|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 968474-968505 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
CP028311_2 2.16|968657|32|CP028311|CRISPRCasFinder,CRT 968657-968688 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP044540 Borrelia sp. CA690 plasmid lp17, complete sequence 10481-10512 10 0.688
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_LR215005 Mycoplasma conjunctivae strain NCTC10147 plasmid 9 126578-126609 10 0.688
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP028537 Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence 45638-45675 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_AP023191 Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence 47029-47066 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 MN539017 Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence 71631-71668 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 MN539018 Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence 121312-121349 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 MT077888 Escherichia coli plasmid p65, complete sequence 47123-47160 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NC_009838 Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence 46527-46564 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP044306 Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence 130757-130794 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP039170 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence 69614-69651 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 CP048299 Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence 195971-196008 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 CP048303 Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence 41259-41296 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP037959 Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence 45070-45107 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP039861 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence 239704-239741 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP048776 Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence 45070-45107 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NC_019114 Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence 43320-43357 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_AP023198 Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence 47029-47066 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP043223 Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence 5920-5957 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP043223 Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence 240141-240178 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP027411 Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence 73185-73222 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_KY689633 Escherichia coli strain 100R plasmid p100R, complete sequence 90192-90229 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_KY689632 Escherichia coli strain 19-M12 plasmid p19M12, complete sequence 93444-93481 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP045446 Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence 47435-47472 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_KU743384 Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence 181822-181859 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_KU254578 Escherichia coli strain YD786 plasmid pYD786-1, complete sequence 164955-164992 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_KX129782 Escherichia coli strain S38 plasmid pS38, complete sequence 46423-46460 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP015833 Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence 45075-45112 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 LT221036 Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence 41890-41927 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 CP019195 Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence 98508-98545 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP045449 Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence 47434-47471 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 MN732922 Escherichia coli strain 49K plasmid unnamed, complete sequence 70876-70913 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP020493 Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence 47990-48027 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 CP031284 Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence 60929-60966 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 CP042895 Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence 106230-106267 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP022735 Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence 61639-61676 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 CP042898 Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence 125697-125734 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP022165 Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence 45073-45110 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP012931 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence 119613-119650 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP023143 Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence 136437-136474 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP026936 Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence 46422-46459 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP025402 Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence 182643-182680 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP026933 Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence 46272-46309 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_MH924589 Escherichia coli strain RDB9 plasmid pRDB9, complete sequence 197020-197057 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_MH208235 Escherichia coli strain APECA2 plasmid pJMA2, complete sequence 166860-166897 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_MK169211 Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence 46085-46122 10 0.737
CP028311_3 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT 985186-985223 38 NZ_CP016838 Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence 46814-46851 10 0.737
CP028311_3 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985436-985467 32 NZ_CP012188 Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence 53401-53432 10 0.688
CP028311_3 3.9|985497|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985497-985528 32 NZ_CP020539 Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence 53255-53286 10 0.688
CP028311_3 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985558-985589 32 LN681539 Clostridium phage phiCD505, complete genome 8933-8964 10 0.688
CP028311_3 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985558-985589 32 JX145341 Clostridium phage phiMMP02, complete genome 8932-8963 10 0.688
CP028311_3 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985558-985589 32 NC_011398 Clostridium phage phiCD27, complete genome 8924-8955 10 0.688
CP028311_3 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985558-985589 32 NC_048642 Clostridium phage CDKM9, complete genome 8871-8902 10 0.688
CP028311_3 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985558-985589 32 KX228400 Clostridium phage CDKM15, complete genome 9066-9097 10 0.688
CP028311_3 3.15|985863|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985863-985894 32 NC_024995 Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119 5043-5074 10 0.688
CP028311_4 4.7|986576|32|CP028311|CRISPRCasFinder,CRT 986576-986607 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
CP028311_4 4.7|986576|32|CP028311|CRISPRCasFinder,CRT 986576-986607 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
CP028311_3 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT 985003-985034 32 NZ_CP041669 Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence 45678-45709 11 0.656

1. spacer 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

2. spacer 3.3|985125|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to DQ838728 (Lactococcus phage P335, complete genome) position: , mismatch: 7, identity: 0.781 

-cagtgagatgccgccaatttgtcaaataaaat	CRISPR spacer
atagcg-gatgccgccaatttctgaaataacaa	Protospacer
 .**.* ************** * ****** *

3. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.816 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagaccgcgaccgagaccgaaaccgaga	Protospacer
**  . .********** ************.*******

4. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.816 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
cgccgccgacaagaccgagaccgagaccgagaccgcga	Protospacer
**.*.*.. *.************************ **

5. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 7, identity: 0.816 

cgtcactac-cgagaccgagaccgagaccgagaccgaga	CRISPR spacer
-gcccccacgcgagactgagaccgagactgagaccgagc	Protospacer
 *.* *.** ******.***********.*********

6. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

7. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

8. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

9. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

10. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

11. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

12. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

13. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.781 

gcgcgccaataattttattgacga-tttcatca	CRISPR spacer
attcgccaataatgttatcgacgatttttatc-	Protospacer
.. ********** ****.***** ***.***

14. spacer 3.12|985680|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781 

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

15. spacer 3.12|985680|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781 

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

16. spacer 3.14|985802|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781 

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

17. spacer 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

18. spacer 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

19. spacer 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

20. spacer 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

21. spacer 4.1|986210|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781 

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

22. spacer 4.1|986210|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781 

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

23. spacer 4.1|986210|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781 

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

24. spacer 2.1|967742|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75 

ttccagaaccgtttgacttactgtggccatta	CRISPR spacer
ctgccgaaccgtgtgccttactgtggccaccg	Protospacer
.* * ******* ** *************...

25. spacer 2.9|968230|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75 

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

26. spacer 2.10|968291|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75 

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

27. spacer 2.10|968291|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75 

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

28. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

29. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

30. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

31. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

32. spacer 3.3|985125|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_014754 (Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence) position: , mismatch: 8, identity: 0.75 

cagtgagatgccgccaatttgtcaaataaaat	CRISPR spacer
cagccgtatgccgccaatttgacaaaaaaagg	Protospacer
***. . ************** **** ***.

33. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.789 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
aagcgtcgtcgagaccgagaccgagaccgagaccgaga	Protospacer
 . *.....*****************************

34. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.789 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
cgccgaggccgagaccgaggccgaggccgagaccgagg	Protospacer
**.*.  .***********.*****.***********.

35. spacer 3.9|985497|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75 

ccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
acgcatcagcactggatcaagctggcgcaact	Protospacer
 ***    ************ ***.******

36. spacer 3.9|985497|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
acgcatcagcactggatcaagctggcgcaact	Protospacer
 ***    ************ ***.******

37. spacer 3.13|985741|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

gaggcgtac-----aggctgttagatgagaaattacc	CRISPR spacer
-----atactaataaggctgtttgatgcgaaattacc	Protospacer
     .***     ******** **** *********

38. spacer 4.2|986271|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75 

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

39. spacer 4.2|986271|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

40. spacer 4.6|986515|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75 

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

41. spacer 2.2|967803|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719 

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
ggtgcgggtgaggaactcctcgtccactgaac	Protospacer
*  **** **** **************   .

42. spacer 2.2|967803|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719 

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

43. spacer 2.2|967803|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719 

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

44. spacer 2.5|967986|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719 

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

45. spacer 2.5|967986|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719 

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

46. spacer 2.7|968108|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719 

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

47. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

48. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

49. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

50. spacer 2.12|968413|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

51. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043846 (Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
tctaaaaatcaataaaatcaaagctaaaaaag	Protospacer
   ****************** * ***. *.

52. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
tctaaaaatcaataaaatcaaagctaaaaaag	Protospacer
   ****************** * ***. *.

53. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034114 (Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
tctaaaaatcaataaaatcaaagctaaaaaag	Protospacer
   ****************** * ***. *.

54. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
ggctggtatcaatataatcaatggtaagcaac	Protospacer
**  .. ******* ********.******..

55. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
ggctggtatcaatataatcaatggtaagcaac	Protospacer
**  .. ******* ********.******..

56. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026804 (Shigella flexneri strain 89-141 plasmid unnamed1) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
tcgaaaaatcaataaaattattgattattaca	Protospacer
  ****************.* **** * .*

57. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
ggctggtatcaatataatcaatggtaagcaac	Protospacer
**  .. ******* ********.******..

58. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
ggctggtatcaatataatcaatggtaagcaac	Protospacer
**  .. ******* ********.******..

59. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
ggctggtatcaatataatcaatggtaagcaac	Protospacer
**  .. ******* ********.******..

60. spacer 3.3|985125|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.719 

cagtgagatgccgccaatttgtcaaataaaat	CRISPR spacer
tggctcggcgccgccaatgtgtcaaatagaat	Protospacer
..*.  *..********* *********.***

61. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 9, identity: 0.719 

gcgcgccaataattttattgacgatttcatca	CRISPR spacer
cagcgccaataaattcattgacgatccaattt	Protospacer
  ********** **.*********.. **.

62. spacer 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719 

ttgcag----ggcgatattgttgttggtgaatggga	CRISPR spacer
----aacactgacgatattattgttggtgattgggg	Protospacer
    *.    *.*******.********** ****.

63. spacer 3.17|985985|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   **

64. spacer 2.3|967864|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688 

ctccagcgctcgaatttatttgaggccaccac	CRISPR spacer
gaacaccgcgcgaatttatttgaggcaagttt	Protospacer
   ** *** **************** * . .

65. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

66. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

67. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

68. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

69. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

70. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

71. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

72. spacer 2.8|968169|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

73. spacer 2.13|968474|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

74. spacer 2.16|968657|32|CP028311|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

75. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044540 (Borrelia sp. CA690 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.688 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
cggaaaaaccaataaaataaatgactttaatg	Protospacer
 *******.********* *****.    *

76. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 10, identity: 0.688 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
ttgagaaatcaagaaaatcaatgatgaaagaa	Protospacer
  **.******* ************.*. ..

77. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

78. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

79. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

80. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

81. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

82. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

83. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

84. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

85. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

86. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

87. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

88. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

89. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

90. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

91. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

92. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

93. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

94. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgagaccgataccgaat	Protospacer
.* ..   ********************** *****.

95. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

96. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

97. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

98. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

99. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

100. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

101. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

102. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

103. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

104. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

105. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

106. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

107. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

108. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

109. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

110. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

111. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

112. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

113. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

114. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

115. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

116. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

117. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

118. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

119. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

120. spacer 3.4|985186|38|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.737 

cgtcactaccgagaccgagaccgagaccgagaccgaga	CRISPR spacer
tgatgaatccgagaccgagaccgataccgataccgata	Protospacer
.* ..   **************** ***** ***** *

121. spacer 3.8|985436|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012188 (Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

gcgcgccaataattttattgacgatttcatca	CRISPR spacer
gaagctgcttaatttttttgacaatttcatca	Protospacer
* .  .   ******* *****.*********

122. spacer 3.9|985497|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688 

ccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
aatctgacgcacttgatcaacctggcgtttga	Protospacer
   ********** **********.**.   .

123. spacer 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

124. spacer 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

125. spacer 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

126. spacer 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

127. spacer 3.10|985558|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

128. spacer 3.15|985863|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NC_024995 (Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119) position: , mismatch: 10, identity: 0.688 

gtttgccgtatcttcgatcataccggaacggt	CRISPR spacer
aacaggactatcttcgatcatatcggaaggga	Protospacer
. . *   **************.***** **

129. spacer 4.7|986576|32|CP028311|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688 

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

130. spacer 4.7|986576|32|CP028311|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688 

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

131. spacer 3.1|985003|32|CP028311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041669 (Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656 

gggaaaaatcaataaaatcaatgataagcagt	CRISPR spacer
taataaaatgaataaaatcaataataaatcaa	Protospacer
 .. ***** ************.****.. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 93825 : 107464 16 Enterobacteria_phage(80.0%) integrase NA
DBSCAN-SWA_2 1644499 : 1660376 15 Salmonella_phage(38.46%) transposase,tail,holin NA
DBSCAN-SWA_3 1732425 : 1741596 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1809872 : 1820378 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_5 1906373 : 1916974 13 Morganella_phage(25.0%) NA NA
DBSCAN-SWA_6 2816106 : 2900012 99 Salmonella_phage(48.21%) tail,transposase,protease,portal,terminase,tRNA,lysis NA
DBSCAN-SWA_7 2964673 : 2972696 10 Ralstonia_phage(14.29%) transposase,protease,integrase attL 2959280:2959294|attR 2971432:2971446
DBSCAN-SWA_8 3576922 : 3620518 68 Enterobacteria_phage(44.78%) tail,integrase,protease,portal,terminase,coat,lysis attL 3577362:3577407|attR 3616627:3616672
DBSCAN-SWA_9 4360383 : 4407903 50 Burkholderia_phage(40.91%) tRNA,tail,plate NA
DBSCAN-SWA_10 4545905 : 4582093 47 Escherichia_phage(46.34%) tail,head,plate,capsid,integrase,portal,terminase,holin,lysis attL 4545748:4545794|attR 4577147:4577193

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage