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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP014211 Bordetella pertussis strain J377 chromosome, complete genome 4 crisprs cas3,csa3,DEDDh,DinG 0 0 27 0

Results visualization

1. CP014211
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP014211_1 645920-646029 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP014211_2 2930570-2930686 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP014211_3 3644401-3644494 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP014211_4 3825853-3825937 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 122073 95 Planktothrix_phage(25.0%) integrase,tRNA,transposase attL 44518:44577|attR 128349:128370
DBSCAN-SWA_2 232714 : 307010 58 uncultured_Mediterranean_phage(15.38%) integrase,transposase attL 254815:254831|attR 308358:308374
DBSCAN-SWA_3 596203 : 660666 51 Pandoravirus(16.67%) integrase,tRNA,transposase attL 629687:629716|attR 667322:667351
DBSCAN-SWA_4 695475 : 772784 59 Bacillus_phage(20.0%) integrase,protease,tRNA attL 771737:771796|attR 777160:777255
DBSCAN-SWA_5 1027073 : 1084737 53 Bacillus_virus(25.0%) integrase attL 1036224:1036249|attR 1088114:1088139
DBSCAN-SWA_6 1089267 : 1151398 58 Bacillus_virus(16.67%) integrase attL 1107060:1107119|attR 1155947:1157004
DBSCAN-SWA_7 1154950 : 1221417 52 uncultured_Mediterranean_phage(25.0%) integrase,protease,transposase attL 1206180:1206239|attR 1217300:1217449
DBSCAN-SWA_8 1321685 : 1378848 52 Klosneuvirus(16.67%) integrase attL 1335432:1335448|attR 1383172:1383188
DBSCAN-SWA_9 1434338 : 1489647 49 Enterococcus_phage(16.67%) integrase,protease attL 1483538:1483554|attR 1490156:1490172
DBSCAN-SWA_10 1565155 : 1633194 59 Streptococcus_virus(11.11%) integrase,tRNA attL 1572587:1572605|attR 1635483:1635501
DBSCAN-SWA_11 1669191 : 1724782 50 Brazilian_cedratvirus(25.0%) integrase attL 1681676:1681693|attR 1725266:1725283
DBSCAN-SWA_12 1746488 : 1838412 60 Brevibacillus_phage(14.29%) integrase,tRNA,transposase attL 1810250:1810273|attR 1841594:1841617
DBSCAN-SWA_13 1958597 : 2028249 58 Staphylococcus_phage(16.67%) integrase,tRNA attL 2006573:2006598|attR 2033396:2033421
DBSCAN-SWA_14 2039745 : 2082172 41 Erysipelothrix_phage(20.0%) integrase,transposase attL 2073872:2073889|attR 2083502:2083519
DBSCAN-SWA_15 2088190 : 2141036 50 Klosneuvirus(22.22%) integrase,protease,tRNA attL 2107468:2107485|attR 2135219:2135236
DBSCAN-SWA_16 2168819 : 2224054 52 Lake_Baikal_phage(25.0%) integrase,protease attL 2186000:2186059|attR 2224055:2224151
DBSCAN-SWA_17 2227161 : 2282480 48 Klosneuvirus(15.38%) integrase,tRNA,transposase attL 2224703:2224722|attR 2292053:2292072
DBSCAN-SWA_18 2321641 : 2385171 50 uncultured_Caudovirales_phage(11.11%) integrase,protease attL 2348180:2348196|attR 2386958:2386974
DBSCAN-SWA_19 2530112 : 2588356 53 Planktothrix_phage(28.57%) integrase,tRNA attL 2561175:2561192|attR 2594156:2594173
DBSCAN-SWA_20 2630684 : 2697136 58 uncultured_Caudovirales_phage(40.0%) integrase,transposase attL 2626812:2626830|attR 2700982:2701000
DBSCAN-SWA_21 2918985 : 3053196 111 uncultured_Mediterranean_phage(16.67%) integrase,tRNA,transposase attL 2972159:2972182|attR 3066534:3066563
DBSCAN-SWA_22 3077000 : 3215738 121 Bacillus_virus(11.76%) integrase,transposase,holin attL 3082387:3082403|attR 3220520:3220537
DBSCAN-SWA_23 3256222 : 3329384 59 Klosneuvirus(16.67%) integrase attL 3321140:3321158|attR 3334632:3334650
DBSCAN-SWA_24 3340671 : 3451253 115 uncultured_Caudovirales_phage(14.29%) integrase,tRNA,tail,terminase attL 3367460:3367477|attR 3441109:3441126
DBSCAN-SWA_25 3601454 : 3664141 54 Lake_Baikal_phage(14.29%) integrase attL 3624448:3624465|attR 3667058:3667075
DBSCAN-SWA_26 3775072 : 3911646 118 Klosneuvirus(10.53%) integrase,tRNA attL 3780350:3780373|attR 3914128:3914145
DBSCAN-SWA_27 4028683 : 4082067 45 Planktothrix_phage(40.0%) integrase attL 4028577:4028594|attR 4089520:4089537
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage