CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034346	Paenibacillus sp. MBLB1234 chromosome, complete genome	6 crisprs	WYL,RT,csa3,DinG,cas3,DEDDh	0	3	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034346_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034346_1

1384909-1384983

Orphan

Consensus_repeat	Method
TCTAACGAAACTACAGATCGTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034346_1

>merge|CP034346|1|1384909-1384983|CRISPRCasFinder
TCTAACGAAACTACAGATCGTTATTTCCTCATCAAAAGCCGCAAATTAAATCTAACGAAACTACAGATCGTTATT

>CP034346|1|1|1384909-1384983|CRISPRCasFinder
TCTAACGAAACTACAGATCGTTATT	TCCTCATCAAAAGCCGCAAATTAAA
TCTAACGAAACTACAGATCGTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP034346.1\|AZS14017.1\|1378149_1378764_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP034346.1\|AZS14025.1\|1388654_1389413_+\|hypothetical-protein	unknown	unknown	unknown
CP034346.1\|AZS14028.1\|1393222_1394602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349760
CP034346.1\|AZS18156.1\|1379634_1380024_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
CP034346.1\|AZS14031.1\|1396302_1397772_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
CP034346.1\|AZS14029.1\|1394606_1395482_+\|flagellar-biosynthesis-protein-FlgA	unknown	unknown	unknown
CP034346.1\|AZS14027.1\|1391932_1392337_+\|hypothetical-protein	unknown	unknown	unknown
CP034346.1\|AZS14032.1\|1397749_1398733_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350045
CP034346.1\|AZS14024.1\|1387558_1388479_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
CP034346.1\|AZS14022.1\|1383883_1384846_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
CP034346.1\|AZS14026.1\|1389430_1391914_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225943
CP034346.1\|AZS14021.1\|1382208_1383177_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213234
CP034346.1\|AZS14023.1\|1385290_1387414_-\|beta-xylosidase	unknown	unknown	gnl\|CDD\|367535
CP034346.1\|AZS14020.1\|1381387_1382194_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226218
CP034346.1\|AZS14030.1\|1395460_1396288_+\|ATPase	unknown	unknown	gnl\|CDD\|349772
CP034346.1\|AZS14018.1\|1378765_1379530_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|376615
CP034346.1\|AZS14015.1\|1375486_1376578_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP034346.1\|AZS14014.1\|1374403_1375486_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP034346.1\|AZS14016.1\|1377144_1377954_+\|histidinol-phosphatase-HisJ-family-protein	unknown	unknown	gnl\|CDD\|213994
CP034346.1\|AZS14019.1\|1380614_1381391_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226953

Protein	Function_ID	Function_description	E-value
CP034346.1\|AZS14017.1\|1378149_1378764_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.62655e-15
CP034346.1\|AZS14028.1\|1393222_1394602_+\|hypothetical-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	3.9289e-05
CP034346.1\|AZS18156.1\|1379634_1380024_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	1.89749e-06
CP034346.1\|AZS14031.1\|1396302_1397772_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	9.6724e-60
CP034346.1\|AZS14032.1\|1397749_1398733_+\|hypothetical-protein	gnl\|CDD\|350045	cd18601, ABC_6TM_MRP4_D2_like, Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated protein 4 (MRP4) and similar proteins. This group represents the six-transmembrane domain 2 (TMD2) of multidrug resistance-associated protein 4 (MRP4), which belongs to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).	0.000716229
CP034346.1\|AZS14024.1\|1387558_1388479_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	3.93958e-21
CP034346.1\|AZS14022.1\|1383883_1384846_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.50869e-09
CP034346.1\|AZS14026.1\|1389430_1391914_+\|hypothetical-protein	gnl\|CDD\|225943	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane].	2.56205e-14
CP034346.1\|AZS14021.1\|1382208_1383177_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	1.16968e-119
CP034346.1\|AZS14023.1\|1385290_1387414_-\|beta-xylosidase	gnl\|CDD\|367535	pfam03512, Glyco_hydro_52, Glycosyl hydrolase family 52.	0
CP034346.1\|AZS14020.1\|1381387_1382194_+\|hypothetical-protein	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.70549e-33
CP034346.1\|AZS14030.1\|1395460_1396288_+\|ATPase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	3.67893e-07
CP034346.1\|AZS14018.1\|1378765_1379530_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	2.00528e-73
CP034346.1\|AZS14015.1\|1375486_1376578_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.50762e-73
CP034346.1\|AZS14014.1\|1374403_1375486_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.68065e-60
CP034346.1\|AZS14016.1\|1377144_1377954_+\|histidinol-phosphatase-HisJ-family-protein	gnl\|CDD\|213994	cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase of Hisj like. Bacillus subtilis YtvP HisJ has strong histidinol phosphate phosphatase (HisPPase) activity. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	5.07865e-77
CP034346.1\|AZS14019.1\|1380614_1381391_+\|hypothetical-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	6.19789e-21

>CP034346.1|AZS14022.1|1383883_1384846_+|EamA-family-transporter
MENVSTGYKVQEPASVRPAKAKSGFWLVVLGAALWGVDPLFRIILLRALTSAQIVLLEHVIIALIAIPVLWKNRGELKGMSMKHLGALLFISWGGSAIATILFTMGLANGNANAVLLLQKLQPLFAIILASLLLKEKLPRHFSILFLIALAGTYFLTFGFAIPIGHWNEFVQVGSLLSLGAAALWGGSTVMGRLMVGQMKYETVTSLRFVLALPLLLAVTWNEGAAWNLPSGTYDLSLVGLNLLGQALLPGLLSILVYYKGLTTTKASVATLAELSFPMVGVLINWIAFQQIVTVPQVLGFLLIWFVLFAISRQNSASAA
>CP034346.1|AZS14021.1|1382208_1383177_+|ATP-binding-cassette-domain-containing-protein
MIEAKHLYKEFKTPIVREGRFSGIRTLFAREYTRKEAVRGISFQIEQGEFVGYIGPNGAGKSTTIKMLTGILHPNSGEVVVGGYNPHQERRKAVRNLGVVFGQRSQLWWDLPVKASYDILAKMYNVTDSDKRRRLDQLAELLDLYEFWATPVRKLSLGQRMRADLAASMLHDPDVLFLDEPTIGLDVNAKRNIRKFLKQLNEDFGKTILLTTHDMDDIEQLCGRVMVINHGELTFDGTARSLRETIGLPTEIRVTFRGQFQLPDTLNPAIRVTDQEDDVVTIEANRQEWSTVDILRELETWGDIDDFEMKEPDFEEIIHKVY
>CP034346.1|AZS14020.1|1381387_1382194_+|hypothetical-protein
MSSKLKTWLELYVLLIKTSVRSRMQYRFNFILGSVLAALIQISEFLMIAIVLYKFGAIQGWSIYEIGYLFSVITLSKTLYRTFADEVHHLEKYLVDGELDQILTRPVPVLLAIMPRNFRIMIGEVLQGGFILCWSMNGLWRSGQIDWTSIVFTLFIIVTGAVILFSIGLATATIGFWTTRIEELQTFTEDAARTAGQYPLTIYPKWMSSMLLIVIPVGFVNYIPALYIIRGELGAWVLVAVAAMATICLGVSMRFWRFGITKYQSTGS
>CP034346.1|AZS14019.1|1380614_1381391_+|hypothetical-protein
MLYFTLAAKAYSRNLQYRGAHMVHNLASAMFGFIYASIWIGLGRDNPLGTYGTHGMISYICFTQSLLWITSFISNGLGIPQAVRTGQISLDLMRPVHLFSHMAAREWGQIAYQFIYKSIPIYMLYLIIFPLHIPKSSFTVMLVAISIVGAAYISICMNYLIGVTALWTTESSWFYWANHALVNLLAGFFIPLEWLPSWLSQLAWLSPYPYLLYIPTRIYLGYEHGSHLWGTLLWCAFLTLICLLATKVLRHKVEVQGG
>CP034346.1|AZS18156.1|1379634_1380024_+|S-layer-homology-domain-containing-protein
MVWRCYCYGCHYGLVQGYADQSFRPNAQITREEMSVMGARALRILQNGVKQGTGTEVILATGESTDLVSGYADGSQLHSWSQAEVELMLQAGIMQGQSKDKFAPASRTTRAEAAAILSRLLAAVKLLNP
>CP034346.1|AZS14018.1|1378765_1379530_+|prolipoprotein-diacylglyceryl-transferase
MYNDLFSIGPFTVHGYGVMIAIGVLAAYMVMMKRAKRLNIDSSHIDSLTVWVLVGGAIGAKVLFWLTQMENILQNPSLLLLMITDGFVVYGGIIGGVLAGYIYCRKKQIGFLKYFDLIIPSVALAQGFGRIGCFMAGCCYGRETDSAFGVVFPSSSLAPGGVRLVPTQLISSGLDFLLFAVLVLYAKRKKADGQVAALYLILYSGGRFILEFFRGDIIRGSVGILSTSQFIAIFLFAIGCGMFIARQYKAAILR
>CP034346.1|AZS14017.1|1378149_1378764_+|TetR/AcrR-family-transcriptional-regulator
MARVVKKPEERKEELLDIAIKLFMEKGYINTSVKDIYTQANGSFGMFYHHFASKEEIFEAAMAKYTDLFVSGISEILQDKRLPYPERYKRVLIHWMGLMNGRDKVRGSRHDVEVFRVLSGKMLSGAIDPVRRYLDEGIEQGFIKTDDSHSSAIFIVYGTFGLLNEERNHIGSNDNALHIFAEVSKRITAMLDAGENTFNFAEEG
>CP034346.1|AZS14016.1|1377144_1377954_+|histidinol-phosphatase-HisJ-family-protein
MFDLHTHHERCGHAAGTIEQYIESAISKGIQVLGITDHSPYFFADEDHPFPGLAMAKSEFARYVEEAVQLKEKYGDRIELLIGVESDIFKEHMVLYNQVYRGFPLDYVIGSIHFTSPSLILQGLDWSQASEEERMAEFRRFIELMQHAVQSDWVNIIGHMDRVHRGNPSFEDLYAPYIAPLLKTMAGRGAVLEVNTGGFRKSAKDWYPSINIIEQAYHYGVDVTFGSDAHDPLRVGDEWEEVRQTLEQIGYKRWVIFRQRRPYYLDIHS
>CP034346.1|AZS14015.1|1375486_1376578_+|carbohydrate-ABC-transporter-permease
MAAKSRRRGSKTVVNIVLGIICLIWLIPTLGLFISSFRPAADILQSGWWKVFPHQGWQTKDTLTLPKETDLREPIQVDGRTFSDEQLKAGVVVDGQRLQWENRRARTLNVQERGWEALPNFTLDNYRNVLSGKEYKLKQADGSETIQKGTGLSQAFLNTLTIAVPATVIPVLIASFAAYAFAWLRFPGRKTLFVAIIALLVIPLQVALIPVLKDYTALGLNGSYLGIWLAHTAFGLPLVTYFMYNFISQLPRDLFESAFIDGASHFTIFSRLILPLSVPALASIGIFQFLWVWNDYLVSLIFIGNQPSVQVISMKIADLVGSRGSDWHLLTSAAFISMLMPLTIFFLLQKYFVRGLMGGSVKG
>CP034346.1|AZS14014.1|1374403_1375486_+|sugar-ABC-transporter-permease
MREVIKSKISIGAVLLSLAVLVVNTAVHGAIFIFFRNTALNPLITAVLAVLWGVLGVYFLYYTLNWAAEKYPDHLRGKILPYIFIGPAAILLGWLLIIPALRTFYLSFFNASSDRFIGFGNYAAIFSDRLLGVALRNNLLWVFIGTLACVSLGLLIAILADRSSYERIAKAIIFMPMAISFVAAGVIWKFIYYYQPGDEQIGLLNAIVMFFGGEPQAWTSMLQPWNNLFLIVILIWMQTGFAMVIFSAAIKGVPDDILEAARVDGAGEIRIFGRIIIPYISATILTVTTTIIVFTLKIFDVVMVMTGGQYDTEVVATQFYRQFFMYRNFGYGSTLAIVLLIAIIPVIIINLRQFRRQGGW
>CP034346.1|AZS14023.1|1385290_1387414_-|beta-xylosidase
MDKKMLFNAHHSPIGAFASFTLGYPGKKGGLDLELASPPNQNIYIGLQEDGKNRYQALPFFGEGQDERDRYTSEQDGEKEVVEDKLITSFAQESITRNFNAATDEWQAGDLTFRIYSPFDSVPDPATSKDEELKFAIMPAVLAEIVVDNTRGTSSRRAFFGLQNSDPYRSIRRLEEVTNGEIIGIGQGRHTAIATSDSRVKSAGFFTMEAILEPKVEENLRFGLGAVGALLMDTPAGEKATYRFAICFYREGYVTTGLDTTYYYTRYFGNIEEVAAYAMDHFDKKVEIAQQADRITDAPHLNDDQRFMLKSSIRSYYGSTQLLDHKGEALWVVNEGEYRMMNTFDLTVDQLFYEMKMNPWTVKNELDLFVKRYSYTDQVHFPGDPTPYPGGISFTHDMGVANAFSKPEYSSYELHSIDDCFSHMTHEQLVNWLLCATVYVQQTQDSKWINDNLSIMEQCLESMVNRDHPDPAKRTGIMGLDSSRTMGGAEITTYDSLDVSLGQARNNIYLAGKSWAAYVAMEKLFTKLGRGEQASLAAEQADRCAATIVSQMLPEGYVPAVIQENNDSRIIPAIEGLIFPLFTGCKEALDPNGRFGAYIQTLNKHLNTVLQPGVCLFADGGWKLSSTSDNSWLSKIYLCQFIARQILGLEWNEQGRAADAAHVGWLTSTANAYWSWSDQMLAGVICGSRYYPRGVTSILWLDEQPSA
>CP034346.1|AZS14024.1|1387558_1388479_+|AraC-family-transcriptional-regulator
MELELANNRYIAEFMLPDMDSTFRIFASHVRTVTRDWSYPRHTHPLFEVNLLLAGGQEMIVNSQRYIQKPGDLLLLRPEDVHESRAIGEEPMTYYCLHFNADDPILHALLSRRNFDLYESTSALTRAIRPSLDKLISLTSANEVPLKLANKMRAMSAVFDLLAGLSEVLSEQGEEELASSKMGRVAFEIAARLEKCVEDSDIQGETLSEVEKEEQHSRDAVAAATADLGYSASSCNRIFQRVYGISPRQYLSGLKLKKAKLLLMEPELTVEAVSTRLGYKDIAHFSRQFKRWTGESPGKFRARFHV
>CP034346.1|AZS14025.1|1388654_1389413_+|hypothetical-protein
MVKCTLPNEELFYLCMLAGAESLLGIEDLRGNLDTEEIRNKWIAVSDRLIHKGILSFEENSELYIDSDYAELISVLAFPEQAFACLLEENDEVSLEFIHSRHGKYTSLKGEENCEVELFLERDDCFKLLVEHFLLSDCLEELQFDLPAEIINYAFALAGTGAVKSSAMMLEPYGLKYEVAEELTRAVYDESLCRIVAGYRFDREHPAEALFHCLKTPQGTWITCMRQGREQVRLFRQRPEAALRQIIQFHGI
>CP034346.1|AZS14026.1|1389430_1391914_+|hypothetical-protein
MEQKVNPNQVEGLADSLGRLNRMIEDQVTGMCKDVSRVVGDTRTQYSEDYVGRAADEVERLIQEIQQLALAIDDQLRIKEKTLRWAAGEYVEREKEAIRKIEEMQQKKIPLVLSREALFQEKNQTLSPFGALPVYPFVLSASVSLPVYIPPLSEELSLNSEKYSDEVLRLQQRLKELGYEVEANGFFDEETLKAVNQFKDNYGLENRRSAAGVVDDQMWRYLFGGLNGILTKDSGVYSDPVKIVQSRLKKLGFDIEATGYYDEQTQRAIDGFREIYGKDLSGADGVIGEQTWNALFNIKVPQPQYTIGAYDPYNSVDVNDILNRDDPEVQKRLEQTYWATLSKEEQDRRYREIKEEMDAIDNKWADKMRRAQSGIGNQFFANLITGTSNAVVNTINTASAGLPELITEWIMGPMPEGYVDPLDDPYGKKAGVIAGNMVGFFLPFKYLKGIKTPALLAKLSPTVLRSVTAEAIFSGVTEVSDSVTDFRKDGDQSLGERLFNIAFNSSAAGVGDVAFTYAFKTISGMLKSSGAQKIFEYIRPKKIEKTYQGNENVDKNLYDEIRRRVLQNIENSRKAREASKYKEYAKKEKSILDDINKRHQLEGTGNVVNRVPLPDTSTIKNIEQAIINNRLTKDSFLSLMRKSANELTPDEARIMENIRKTVPTPEVNTPLQKVLNPSFVNGYLDGSFMNFNGGKIGGCITTVEDASKLMSPKIIYDGLRLDYPGTPFSPTDGFTTVIRFTSKDAGNIKIPFGDSMPNPTGGRVSTMTDPFTGNGFTSATNGQIIPEFYSDGLTLTNGAQMIKISSDGIETLFAVFDKVEGKFIPVN
>CP034346.1|AZS14027.1|1391932_1392337_+|hypothetical-protein
MLRTLGINAIYDEKEYEFIDLDDGTFALISNDNNDLNRGFVKVINSSNRFIKYVKLEELSFIYQKDTEVKYKGDIFIGSIIEGNQIMLYTRDVPLGKKHNMMMRDKDEYYLHVDLKEVDEIIQILKPLSQYTKK
>CP034346.1|AZS14028.1|1393222_1394602_+|hypothetical-protein
MKLLVIAGGFHSLVLGSLSRKTVVINSKGLELQDLREFVAEESPTADSVLITDEAFSQKLGQDREHLTHFLEWVKDSGRPGIPVLIITRDSMRVEDFAALSSRYSNLRIVTIDKVRAPLDIFQFELDIAARRESSSIHTNSQAVHKIQNETQANKEPVERKRSFFDRFRSKPDSSTEQLEATDRLSRELDNISRGISRIIAITGHRGSGVTSTIVNLAHEASKRGLSTIIIDMDTEYRSMNMYFDRFHERTNKEEQMSSSLIRTLARPQDYMTTAFNIKDNLWLTSLGYSFHDHRLMEQFYNSEKLIGLISVLRSRFNLVLLDMPLDLFRKFKETMIHIDIFGLCVPNNLHAVLSTVRNVEVVLDQEKATYLNAKAKVIVTQYNDRSRFQDQLFTPDKVSEVLTSGLSEYFRYDMRTAGAVPYNSGFDSQIETDVPLTNTGAEFERAFGQMLLRLMEGA
>CP034346.1|AZS14029.1|1394606_1395482_+|flagellar-biosynthesis-protein-FlgA
MDLKTVKSVSPNRKLFKKILALLLSILIIIVSYVVLNNANEAAKDTVEVLRISQSGGVPAYVPITEKQIKKYSIIRREYSDDMVLAKDMDSVVDKFTKYYLRDDSILYKDQFMDEKPQQNEWLYEMEDQHEVLTLPYNFLEAGGDILMPGDRVRIRVSYEQEEGSSAGNPNAGYSSGGSKMKTEILFDSIEVRDMLNSSSHSIYEVYKEVLKLSEDKRQEVMKSNDFLKSIQPKSLLLEGTKEQIDNFAKYNGYDGKKYLITMLSRKNSQVILDQLPTLQREVESWIKPKD
>CP034346.1|AZS14030.1|1395460_1396288_+|ATPase
MDQTERLSLDQVLDKISPKEYMGSEFQESKLIYSVIGFIPACDMVDNALVISNLGYMLSQKGLNTCILDLKVFNPNLYHYLDAKPNKKGSGLIRVLKSDKVDFREEIQATKYERLYLLSPSPHDLIEEYLDFEFDHLEHVINTLKGMFDIVLVDIPNNPPLEFCLGAMKFSHIGFFTSTERIEATSNMIRLLDFASSVGISTAKFTSVILMNIQDINYDHKAISEFGLNIVAALPYVKAAYAYSLEGKLYVRDNPLINRYFLKQMRRLTDILCNQ
>CP034346.1|AZS14031.1|1396302_1397772_+|CpaF-family-protein
MLTRAKISDMQQKVSYQVSKKEDMDDLKNKYTTIQFEEALEHCQKYITKVATHAFRREHDPARKREMTKAYINEFVDSQKPVVEGYYELVDLKRALIDEITHYGPITKAMEDPAIDEIRINGIEQIFVETGGKTLPWEHQFLDRDHLERIISKLLGVSKVRLTPKIPMVNARTIEGYRVNATHADISPYDMPAVVIRKFSKKSITPEMMIKNESFSVNMFKMLSLLPKSDLSWITVGPTGSGKTTLNEMMVKEINPLSRIITIENPSEMRLLRREGNLEHGRIINDVLQYESVPDDDDASPATMENLLINAMRQSPHWIGPGELRTPGEFATALRAAQTGHFFFTTLHAEGDREAIFRFLTAYLMASNEPAELALRNICSAVKFVVFQEKLADGTRKVTSISEVIGSEGLEPIINPIYKFISEDVVEDEETHRVLKIIGKHKRVGTLSEKVQQTMIKAGIKRSRFEFLTAEPAEDEIEEYGFDGYNFNH
>CP034346.1|AZS14032.1|1397749_1398733_+|hypothetical-protein
MDTTSIISLFFGIAAFIVLNSMFEIRFFEGTGRFFLNLLDTFAEYLGKYNTKRYVERMKKERIVKQKENVYAKYNRLVEGLIIDFNLPLTLESFTSLLCICFAIVVLVVVIFMQNVTLAVVVTVAIFIGLLTYFVMQSKAIKAEKLESIMDAEDIICPLAREGVLVAIKKVMESDEYIRPGIRPYFQQFIDNCENNGYSFKQAITLLNRQLGPKFDNFTKKAIVFEYNERKGMADIFLDIVDENAVLREINARKDRIFRKMNRDFLLKTVIIVLFFLYALSVKDFREFMLYTTFGKVINTSMISIICLSFARTQALQGNLGPGSDGK

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Crispr_ID: CP034346_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034346_2

1462546-1462622

Orphan

Consensus_repeat	Method
AATACCTGCAGAAATGCAGTTTTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034346_2

>merge|CP034346|2|1462546-1462622|CRISPRCasFinder
AATACCTGCAGAAATGCAGTTTTTTAACAGGTTTAACAAGCTTGGAATGGGAATACCTGCAAAAATGCAGTTTTTTA

>CP034346|2|2|1462546-1462622|CRISPRCasFinder
AATACCTGCAGAAATGCAGTTTTTTA	ACAGGTTTAACAAGCTTGGAATGGG
AATACCTGCAAAAATGCAGTTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
CP034346.1\|AZS14074.1\|1450393_1450594_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|237837
CP034346.1\|AZS14075.1\|1450810_1451206_+\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|237616
CP034346.1\|AZS14086.1\|1468690_1469632_-\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
CP034346.1\|AZS18160.1\|1463037_1463949_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP034346.1\|AZS14078.1\|1453859_1454429_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
CP034346.1\|AZS14073.1\|1449599_1450211_-\|sporulation-membrane-protein-YtaF	unknown	unknown	gnl\|CDD\|274321
CP034346.1\|AZS18161.1\|1467711_1468671_+\|DNA-ligase	unknown	unknown	gnl\|CDD\|185715
CP034346.1\|AZS14082.1\|1463941_1464718_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
CP034346.1\|AZS14076.1\|1451488_1451932_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
CP034346.1\|AZS14077.1\|1452010_1453705_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP034346.1\|AZS14083.1\|1464692_1465184_-\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
CP034346.1\|AZS14081.1\|1457765_1462406_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
CP034346.1\|AZS14085.1\|1466665_1467559_-\|DNA-polymerase-domain-containing-protein	unknown	unknown	gnl\|CDD\|182006
CP034346.1\|AZS14079.1\|1454626_1455205_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP034346.1\|AZS14072.1\|1448484_1449426_-\|hypothetical-protein	unknown	unknown	unknown
CP034346.1\|AZS14088.1\|1470386_1471253_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
CP034346.1\|AZS18162.1\|1471316_1471760_+\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
CP034346.1\|AZS14080.1\|1455286_1457473_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
CP034346.1\|AZS14084.1\|1465259_1466264_-\|M23-family-peptidase	unknown	unknown	gnl\|CDD\|366703
CP034346.1\|AZS14087.1\|1469895_1470390_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771

Protein	Function_ID	Function_description	E-value
CP034346.1\|AZS14074.1\|1450393_1450594_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|237837	PRK14861, tatA, twin arginine translocase protein A; Provisional.	1.23056e-13
CP034346.1\|AZS14075.1\|1450810_1451206_+\|DivIVA-domain-containing-protein	gnl\|CDD\|237616	PRK14127, PRK14127, cell division regulator GpsB.	3.2463e-11
CP034346.1\|AZS14086.1\|1468690_1469632_-\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	8.62933e-123
CP034346.1\|AZS18160.1\|1463037_1463949_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.0782e-92
CP034346.1\|AZS14078.1\|1453859_1454429_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	5.05861e-45
CP034346.1\|AZS14073.1\|1449599_1450211_-\|sporulation-membrane-protein-YtaF	gnl\|CDD\|274321	TIGR02840, conserved_hypothetical_protein, putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein. [Cellular processes, Sporulation and germination].	2.28362e-45
CP034346.1\|AZS18161.1\|1467711_1468671_+\|DNA-ligase	gnl\|CDD\|185715	cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is common to all members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. LigD consists of a central ATP-dependent DNA ligase catalytic core unit fused to a C-terminal polymerase domain and an N-terminal 3'-phosphoesterase (PE) module. LigD catalyzes the end-healing and end-sealing steps during non-homologous end joining.	6.92449e-65
CP034346.1\|AZS14082.1\|1463941_1464718_+\|ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.33027e-10
CP034346.1\|AZS14083.1\|1464692_1465184_-\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	5.72109e-22
CP034346.1\|AZS14077.1\|1452010_1453705_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.19775e-56
CP034346.1\|AZS14081.1\|1457765_1462406_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
CP034346.1\|AZS14085.1\|1466665_1467559_-\|DNA-polymerase-domain-containing-protein	gnl\|CDD\|182006	PRK09633, ligD, DNA ligase D.	2.94322e-90
CP034346.1\|AZS14079.1\|1454626_1455205_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.38864e-17
CP034346.1\|AZS14076.1\|1451488_1451932_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	2.49115e-59
CP034346.1\|AZS14088.1\|1470386_1471253_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	3.85329e-50
CP034346.1\|AZS18162.1\|1471316_1471760_+\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	7.74177e-48
CP034346.1\|AZS14080.1\|1455286_1457473_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	6.6432e-137
CP034346.1\|AZS14084.1\|1465259_1466264_-\|M23-family-peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.15114e-48
CP034346.1\|AZS14087.1\|1469895_1470390_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	1.85519e-54

>CP034346.1|AZS14081.1|1457765_1462406_+|glutamate-synthase-large-subunit
MMTNRHTVAPPRQGLYDPVFEKDACGMGFVAHIKGKASHSIVVQALTMLTNMEHRGGQGSEPNSGDGAGILVQIPHRFLAREALKLGFELPVSGEYGVGMLFLSQIAEERASQEAAITRIAEEEGQGVLGFRDVPTNDEMLGESAKEAKPYVRQVFISRSADLEDELAFERKLYVIRRRAELSIRYADDTEENSFYVSSLSCSKLVYKGMLTTEQVGQFYLDLQDEAVESAIALVHSRFSTNTFPSWERAHPYRFMIHNGEINTLPGNVNWMHARQSLFVSDVFGSDLEKIKPVINPDGSDTAMFDNTFEFLYLSGRSLPHVAMMMVPEPWNNHAEMEPTRRAFYDYHSSLMEPWDGPAAMGFTDGIQIGAILDRNGLRPSRYYVTKDDLIILSSEVGVLDIPAEDVLYKDRLRPGRMLLVDTKEGRIIADEEVKARVAQELPYDRWLAEHRITLQELPEASMKLELSHEEITNKQMAFGYSYEDLHKVLEPMALTGSEGLVSMGYDAPLAVLSERPQRLYNYFKQMFAQVTNPPMDAIREELVTSAMTLIGPEQDLLHPAPESCRQIVLSSPFLSDEDLAKLRHVKREGLKPAVLPILFATTKGAAGIAQALDDLCAAADQAIAQGKSILILSDRTVDAEYAAIPALLAVSCLHHHLISQGTRTQVSIVLESGEPREVHHFALLIGYGANAVNPYLALASLRDMINGGMLRGVSISRAEVNYIKAVNKGVIKILSKMGISTIQSYRGAQIFEAVGLNQQFVDRYFTRTPTRIEGIGLKEVAIETLASHQQAFSVAQGGQEKILDSGGQYQWRNEGEEHLFNPQTIHLLQQAVRSGDYSLYKKFAGLVQGENEQRYTLRSLLHLLPAGPRVPLEEVESAASIMRRFKTGAMSFGSISKEAHETIAIAMNRIGGKSNSGEGGEDPARYVKDANGDSRRSAIKQVASGRFGVTSQYLVNADEIQIKMAQGAKPGEGGQLPGNKVYPWVAEVRGSTPGVGLISPPPHHDIYSIEDLAELIYDLKNANPRARINVKLVSEVGVGTIAAGVAKGRADVILVSGYDGGTGASPQSSIRHAGLPWELGLAETHQTLMLNHLRDRVVLETDGKMLTGRDLAVAALLGAEEYGFSTAPLVSVGCIMMRVCQLDTCPVGVATQNPELRKNFTGDPQHVVNFMTFIAEDLREWMAELGFHSLDEMIGRTDCLDAGRVDQHWKRSGLDLSALLHTPVMEEEESRRRHSREQNHGLEETLDAVELLKQAAPALDRGEAVSISLPICNVNRATGTLLGSEVTRRYGADGLPDDTILLNFEGSAGQSLGAFVPRGITITVEGDANDYVGKGLSGGKIIVRPSRFATFAAEENVIIGNTSFYGATSGEAYIRGIAGERFAVRNSGANVVVEGVGDHGCEYMTGGRVVVLGDTGRNFAAGMSGGIAYVLDLHGKFKKRCNQEMVLLEQVESEVEAEHLRTWIRRHVLYTDSTVGRRILDCWHEMLPRFVRVIPQDYKRMLEQIRKVEEKGLQGEAARLAAFEANSRELDQTGIRAASGLPNPR
>CP034346.1|AZS14080.1|1455286_1457473_+|YhgE/Pip-domain-containing-protein
MKSMSVFFKDLASSFKKPKVIIPILVVMFIPVLYSGMFLKAFWDPYGKMDEIPVAVVNEDRGAEYEGTELQAGNDLVEELKKNAAFGWEFVTREQANEGMKNNDYYMTLVIPSNFSEQATTLMDDQPKPAEIIYEPNEAYNFLAAQIGGTAVKEIKSKVSAKVTEAYTDVLFDQVEKISSGLGDAGEGATEINDGAVKLDEGAQKLKENLAKMVDGSVKLQDGISPLTEGVGSLNKGAGDLKTGATSLASGLNQLADANKQLQNGAAAANEGGNQLKTGLGASLNGANALAQGLKQSEQGSASLVTGLESSAQGSTKVAEGAKAVAQGIEQLTQASPELAANPAVKQLLAASQAVATGSEQVAQGQQQLLKGSKDLHGAQQQLVQGSEQLVQGQEQLAQGAAKLTEGQGQLVGGLKQFGVKLNEAAAGGSQLATGAGALSEGAKKIEGGMGQLSSGVATLADGSKQLDEGAGELKDGTSKLSEGSGELASKLNEAADETSSVKKTDALVDMFAQPVDVDEQKMNEVPNYGTGFSPYFLSLGLFVGALISTLVVPLRSSSVSEASGWNRFVSRSLSFTGMSLFQSLFAVVLVLYGLKLEVQNVPMFYLFTFVTSLCFMFIIQALVTWLDNPGRFLAILLLIFQLTTSAGTFPVELLPSWMKAFNPFMPMTFSVKGYKAVISSGEMSVAWGQMGILIGVAVVFLALTLVYFLAHNNSVAEEVSAEASLQA
>CP034346.1|AZS14079.1|1454626_1455205_+|TetR/AcrR-family-transcriptional-regulator
MAVVDRRRQIVEAAEKSFALFGYKATTMDHVAKIANVAKGTIYTFFANKEELFDEILRSVIIEMKKITEQEVQDDRPFFENLYQSMDKLLEFRREHELLVKLFQEVRDFGTPQAREGLEKIELAILDYLERQIDRAAKHGEIREFDPKVIAFVLVKLYIALTSDWNKIHEPLSKEQIREFSQIFLSGGLSKT
>CP034346.1|AZS14078.1|1453859_1454429_+|RNA-2',3'-cyclic-phosphodiesterase
MSNNSEVWRLFIAIPIPSPVKQAIADWCKEQRDKLAFQKWVHQEDYHITVQFLGDTSPERLDDLQLAATRAVSNIRPTHMEAHGCGTFGRADQPRVLWAGLSGDMELLNKLQNNVIEENGKLGYIPEDRPYRPHITMARKYRAGYKLETDIKMTNPQFGSWTADALVIYRTNMHHQPMYEKVAEIPFAK
>CP034346.1|AZS14077.1|1452010_1453705_-|methyl-accepting-chemotaxis-protein
MGFAKKITIAIVTLLGLIGAIIGVFGYQTTYRQVEKSVGVETVGCANITTGLINPAVIELLANGDKSKLAEVEQQLNWTVDHKPLFKEAFILSLDGSILAADQHLKERGYNAGDAFYFDPADRDMIMDMKHSVYTKVYTYDDTELLTGYGPIFQDNDPNKSIVGLMAINFDASIIHDRTWEIITLPFIIGAVVFLLAALVVYFIIHRMIRPLEHLSNQVNQIAQGDLTITPMVLKSNDEVGKLSRDFSNMIINLRSLITEVSSTSIQVASSSQQLSASAEQTGTACEQTVYITQELAEGAETQLHDLEQSSNTLRSMSTSTKQIVHTMSDVSDAAQSSSVAAGQGVASIQQSIQQMNRMQGKINELSANITELSGHSKEIQSILEIITAIADETNLLAINASIEAARAGEYGSGFAVVASSVGKLAERSAESVKQIATLVGYIVTQMEATGTTMIETAREVELSTSLVYSAGESFDEIENQSTATAGAISNISGAVQELSGQTELLVKSLENIVEIANNNVDGAQSMSAASQEQLATMEEVDASANFLANLSDKLHTLIEKFKV
>CP034346.1|AZS14076.1|1451488_1451932_+|DNA-starvation/stationary-phase-protection-protein
MANQALEKQMNLLIANWTTMYTKLHNFHWYVKGHNFFTLHVKFEELYDEAAGYIDDIAERLLSIGGKPVATLRESLELATIKEATGNETPDQMVAAIVADFEVLDKELREGMSIAEEAGDEATSDLLLGVVSTLEKHRWMLNAFLNN
>CP034346.1|AZS14075.1|1450810_1451206_+|DivIVA-domain-containing-protein
MQDDYARKLDDQKSLFKQLGIKLDALTIHEKDFDVKMRGYEKEEVDRFLDDIIIDYERFYDIITDLLDKYKEIQRRQAYWEEEKKMMSSMAARKPQVDTENAVDRRLVDDGIRQLERSLEHFKQFINGGLK
>CP034346.1|AZS14074.1|1450393_1450594_+|twin-arginine-translocase-TatA/TatE-family-subunit
MIENLLRPSHLLLLVIAALLLFGPSKLPELGRSFGTMLKEFRKGARGDFIEETPQEVKPVQESNKS
>CP034346.1|AZS14073.1|1449599_1450211_-|sporulation-membrane-protein-YtaF
MDSYSLAAIVIIGLASNLDNAGVGIAYGVRKIRIPWYSNLTIAFISFLATLLSGLFGSWLSVWVQPWIGQMIGTVVIVGVGIWVLLQPYLEKKPAQQDDDANALTRLLRNPEEADKDSSQSISLGESILLGIALAMNALAGGFNAGITRLSIWGTSLSVGIFSFILLALCAGFGQKFAAEKFGNRATVISGVLLILIGLHQLF
>CP034346.1|AZS14072.1|1448484_1449426_-|hypothetical-protein
MMWLTRFEGDLGLIFSRAESILATIPEEFRNPTLSYLDKFHPLKEHRSKNYICYLLPYWLNEEVPIDPDHVHQISTANIMGMLYYHLIDETMDNPSLISRSQLPLAQLIHSEFIKIYSALFPSSSPFWTYYDKYIGEWAVAVTYENEQDFFQVNPARIAHRAAPVKLSVAAMMLLSGQETRIPQLEEAVDLVLITLQMIDDWQDWEKDLIEGSYNCLLSMVQADLHLSDRRPTVEEIKQAVYVEGCLIRYSERADVHHRTLSYTSTSFPLLYEFHAYLCDQLEEIAQQIERDRSLLQRGGLEYLLSQQLTKSK
>CP034346.1|AZS18160.1|1463037_1463949_+|ABC-transporter-ATP-binding-protein
MDLEPVVRLKQVSKRIGGKTIIDKLTLDIPPGQVYGFLGPNGAGKTTTIRMMVGLMSISEGDIEIQGASVSEQFELAISHVGAIVENPEMYKFLSGYHNLLHYARMSPGVTKQRIAEVVELVGLEQRIHDKVKTYSLGMRQRLGVAQAILHRPRLLVLDEPTNGLDPQGIRELRSYLRQLAEKEGTTVFVSSHLLSEMELMCDTVAVIQQGRLIDVRQLHDQDKLENERKQTVFEVSDPQRAWELIGQGQVVDGGLLLELDRNAAAVINEQLVRGGISVYRIRVVTRTLEDQFIELTGGVGIE
>CP034346.1|AZS14082.1|1463941_1464718_+|ABC-transporter-permease
MNNFINLVQNENMKIYRRIRTWIMFGIIVLMVLFFAILFRLGGGGSTISAWDATGQLSFLYYLVTIFASVVAADIVAGEFTWGTIKLLLIRPWTRTKVLASKLLALILFTLLITVLFFLSSMLISYAMYPVKTSMMFSDNASPFAYLLEDMLYRYIDLLVITLFSFMISTVFRSSGIAIGLSMFILFTGGIFTMLFNPVRYPWAKYTLFVNMDLSQYRGGQEGVAGMTLGFSITVLICYVLLFLMISWLVFNKRDVAA
>CP034346.1|AZS14083.1|1464692_1465184_-|polymer-forming-cytoskeletal-protein
MRRKNARAHGLTDTLIGQGSIVEGKIQCESNVRIDGAFHGEIDCKGQVIVGESGEARSSIIGANIIVAGHVVGDISTKGKLTITSSGQVDGNVSVSMLIILEGGLLNGVSTMEKIKAVAPIKEKAQKNPTARSGVIHSEESKIVPVCIANGNLFLLRRLHPAC
>CP034346.1|AZS14084.1|1465259_1466264_-|M23-family-peptidase
MRSATLPNPNRMTLLVLREAGQPAKQMHMSKPLIIAVPLVAILSISGLIISLQLQSNQTIARLEGQLQSQNLKFEAVVSDKNAAIERLQNEVISLSSQSQDMMNRMERVAELEDQLQKFIEKYGESDSSALSNLSALSLKGLDVDDPNEQLGVGGEFIAVHENEIEQLAEHTKDQFLEMNAMLDEMEKNVPLTLKRAKQTQYSLSGTPSEWPTLSKRLTSNFGYRTDPFTGRASFHAGIDIGAKQGDPVYAAAAGEVITTAQDNSHGKYIIIQHPGGLQSWYLHLSKISVSEGDFIKKGQTIGQVGNTGRSTGPHLHFEIVKNGKTIDPLPYLQ
>CP034346.1|AZS14085.1|1466665_1467559_-|DNA-polymerase-domain-containing-protein
MARSIKGTIRIEGEEVTITNPDKLLWPEAGITKQQYLQRLAELSPYLLRYCRNRFLTTIRYPGGIHSKFFYQKNAPEPLPDFVKTAQHEDINYIVLDNLPTLLWLGNLAAIEFHPSLHYVGDILPCEWMIDLDPSQDDEPRIMEAAAYVGDILASLGISSVPKTSGATGVQIIIPIEYGVTFDQLRSIGQFVARYATEKYPSFFTIERLKKDREGKIYFDYLQHYSGKTLAAPYTPRARQAASVSTPLTWDEVRKNPHPSEFNLLNIGERLQQRGDLLQEVKPQSLELILRHLQSKA
>CP034346.1|AZS18161.1|1467711_1468671_+|DNA-ligase
MEFTPVVPFEPIRVFEFPQGKQWIAQVKWDGVRMLAYIDKGRVRLINRRGNERSLQYPEFMNPSEYCRAESAILDGEMIAIADGKPSFHEIMKRDSLRRQQEIAFAVPRISVVYMIFDILYCNGSWVTDQPLVQRQHLLQEYILPSTRVQLVPNVDHAEGLYTVMKERQWEGIVCKQLDSSYAIGGKDDRWRKMKLTYDLYAVIGGVTYRDGIVNSILLGLYNEQGNLIYIGNAGPGKWKGNDLSRITEDSRRLAIANRPFAAPFAAPPGRVKGVVWMQPELTVKVQFAEWTPGGTLRHPVLQGWADVPPETCVFTQQV
>CP034346.1|AZS14086.1|1468690_1469632_-|Ku-protein
MHTVWKGAISFGLVHVPVKMFSATEDKDISMKYIHKVCGSPISYVRRCPACDVDVTWDDISRGYEYEKGKYVLFSKEELDQLSAQTEKTITILDFVDLTEIDPIYFQKTYYLSPDQAGGNAYRLLLEAMRDSGKIGIAKIAIRSKGSLAAIRVMEDCLVIETIFYPDEIRPVSQVPNLPQGANVNDKELTMAKLLIEQLSTPFEPEKYTDDYRENLLTLIQQKIAGEEISLAPAKPETNVIDLMAALQASIEAVKGPIVTDPGETKPKRTTTRKKKEAVAESETQAETNEATPAAVTKPKRKPSSKTAKKTIS
>CP034346.1|AZS14087.1|1469895_1470390_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MEFDKLSAKLVFEIKDLAGTEKLAAFLAGQALAGTVIALDGDLGAGKTAFSQLFAKHLGVKGTVNSPTFTLIKEYKGRLPFYHMDVYRLSLDEAEELGLDEYFYGQGVTLVEWASLITDILPQNLLHIYLETLSVTERRIYLKAQGQPYDDWIYTLTENGVLEQ
>CP034346.1|AZS14088.1|1470386_1471253_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNIDGNRPQQRLLAFDTSTSSLAVAVMENGTLLAEQNIHAERNHSAYLVTAIEKALEAAGITKQELDGIAVGVGPGSYTGIRIAVTTAKTLAWALKIPVFGISSLEATALGAWAKETGQDTAALGAYALGDRSRVADATAESSAAAGTTASAREHWIIPLVDARRGQVYTALFSAQDNTLTHRLEQDGIRLMDRWIEQLAELLQTYAPEDRPEGIWIVGDVALHEAAAEALRPLMGDRLHIVSYELEGIWMGIAGTARSRSGAGDDVHAIEPNYTQLAEAEAKRLRNA
>CP034346.1|AZS18162.1|1471316_1471760_+|ribosomal-protein-alanine-N-acetyltransferase
MTLDDIPDIMVIEHESFSLPWSEGAFRNEMTMNHFAKYLVMEVEGKTVGYCGMWTIVDEAHITNIAVRTALRGHHLGERLLREVMDWAVELGMVRMTLEVRVSNYVAQSLYSKMGFVPTGKRKDYYSDNHEDALIMWCDLPVRVQQG

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Crispr_ID: CP034346_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034346_3

1556858-1556932

Orphan

Consensus_repeat	Method
TCTAACGAAACACCATATCGCTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034346_3

>merge|CP034346|3|1556858-1556932|CRISPRCasFinder
TCTAACGAAACACCATATCGCTATTCCCCCCAAAATGACAGAGATTTAAGTCTAACGAAACACCATATCGTTATT

>CP034346|3|3|1556858-1556932|CRISPRCasFinder
TCTAACGAAACACCATATCGCTATT	CCCCCCAAAATGACAGAGATTTAAG
TCTAACGAAACACCATATCGTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP034346.1\|AZS14148.1\|1562690_1563587_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP034346.1\|AZS18169.1\|1542095_1543685_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270298
CP034346.1\|AZS14140.1\|1552648_1553461_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
CP034346.1\|AZS14151.1\|1567836_1570116_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|214757
CP034346.1\|AZS14143.1\|1557272_1558700_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
CP034346.1\|AZS14133.1\|1540218_1541133_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
CP034346.1\|AZS14150.1\|1565371_1567840_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|350134
CP034346.1\|AZS14139.1\|1551918_1552512_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|377296
CP034346.1\|AZS14145.1\|1559538_1560234_+\|RNA-polymerase-sporulation-sigma-factor-SigK	unknown	unknown	gnl\|CDD\|180266
CP034346.1\|AZS14137.1\|1550491_1551289_+\|carbohydrate-binding-protein	unknown	unknown	unknown
CP034346.1\|AZS14146.1\|1560508_1561477_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380514
CP034346.1\|AZS14135.1\|1543775_1545512_+\|hypothetical-protein	unknown	unknown	unknown
CP034346.1\|AZS14149.1\|1563709_1565344_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270299
CP034346.1\|AZS14141.1\|1553539_1555030_+\|glycerol-kinase	unknown	unknown	gnl\|CDD\|234594
CP034346.1\|AZS14144.1\|1558848_1559367_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
CP034346.1\|AZS14138.1\|1551366_1551768_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240035
CP034346.1\|AZS14152.1\|1571218_1572970_+\|indolepyruvate-ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274526
CP034346.1\|AZS14134.1\|1541137_1542019_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP034346.1\|AZS14147.1\|1561728_1562679_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
CP034346.1\|AZS14136.1\|1545571_1550275_+\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|187679

Protein	Function_ID	Function_description	E-value
CP034346.1\|AZS14148.1\|1562690_1563587_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.02992e-63
CP034346.1\|AZS18169.1\|1542095_1543685_+\|extracellular-solute-binding-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	4.8315e-96
CP034346.1\|AZS14140.1\|1552648_1553461_+\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	5.5691e-82
CP034346.1\|AZS14151.1\|1567836_1570116_+\|glycoside-hydrolase	gnl\|CDD\|214757	smart00640, Glyco_32, Glycosyl hydrolases family 32.	4.26016e-107
CP034346.1\|AZS14143.1\|1557272_1558700_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	5.00855e-49
CP034346.1\|AZS14133.1\|1540218_1541133_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	2.27841e-123
CP034346.1\|AZS14150.1\|1565371_1567840_+\|glycoside-hydrolase	gnl\|CDD\|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	4.84701e-159
CP034346.1\|AZS14139.1\|1551918_1552512_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|377296	pfam04309, G3P_antiterm, Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalyzed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.	1.93957e-83
CP034346.1\|AZS14145.1\|1559538_1560234_+\|RNA-polymerase-sporulation-sigma-factor-SigK	gnl\|CDD\|180266	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK.	3.25693e-145
CP034346.1\|AZS14146.1\|1560508_1561477_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.17586e-109
CP034346.1\|AZS14149.1\|1563709_1565344_+\|extracellular-solute-binding-protein	gnl\|CDD\|270299	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	0
CP034346.1\|AZS14141.1\|1553539_1555030_+\|glycerol-kinase	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
CP034346.1\|AZS14136.1\|1545571_1550275_+\|DNRLRE-domain-containing-protein	gnl\|CDD\|187679	cd09621, CBM9_like_5, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.	1.95365e-51
CP034346.1\|AZS14138.1\|1551366_1551768_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240035	cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.13142e-50
CP034346.1\|AZS14152.1\|1571218_1572970_+\|indolepyruvate-ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|274526	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.	0
CP034346.1\|AZS14134.1\|1541137_1542019_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.08729e-65
CP034346.1\|AZS14147.1\|1561728_1562679_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	3.80991e-132
CP034346.1\|AZS14144.1\|1558848_1559367_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.34295e-08

>CP034346.1|AZS14141.1|1553539_1555030_+|glycerol-kinase
MEKYILSLDQGTTSSRAILFDKAGQIVHVSQKEFTQIFPEPGWVEHNAQEIWGTILAVIATCLIESGVKPAQIAGIGITNQRETAVVWDKESGRPIYNAIVWQSRQTKSICDELQAAGYEELFRSKTGLLIDSYFSGTKVKWILDHVPGARERAERGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTLMYNIYELKWDDELLELLTIPKQMLPEVRSSSEVYGNTVNYHFFGEEVPIAGVAGDQQAALFGQACFQQGMAKNTYGTGCFMLMNTGEQAVQSSHGLLTTIAWGIDGKVEYALEGSVFVAGSAVQWLRDGLRMLKESKDSEQYASRVDSTDGVYVVPAFVGLGTPYWDSEVKGAIFGLTRGTSKEHFIRATLESLAYQSKDVLNAMEADSSIGLTTLRVDGGAIQNNFLMQFQSDMLGVPVECPQVFETTALGAAYLAGLAVGYWGSRDEIATQWSIDRTFTPSMSEERRNELYAGWGKAIEATKVFK
>CP034346.1|AZS14140.1|1552648_1553461_+|aquaporin-family-protein
MSAFWGEFIGTMILVALGGGVCAGVSLKRSYAANSGWIVITMGWGLAVAIAAYSVGTISGAHLNPALTLGLAIIGNFPWSDVPLYMAAQMLGAIVGAVIVYLHYLPHWRVTEDPGAKLSVFATSPAVYHPFSNLMSEIIGTFILVLGILAIGANKFTDGLNPLIVGFLIVSIGLSLGGATGYAINPARDLGPRIAHMLLPIPGKGSSNWRYAWIPVVGPLLGGSFGALFYKNVFLGRVDGTIWIVIGIAVVILLLSLLLFGKSAKRSVSM
>CP034346.1|AZS14139.1|1551918_1552512_+|glycerol-3-phosphate-responsive-antiterminator
MKFYEQRILPASRQMKDLEKAVASSYEYLVLLDVHISQLKHACNMVQQANKKLFLHLDLIQGLQSDAHATEYLCQEYRPYGILSTKSSVIQKAKQKGVLAVQRIFLIDNSALEKSCKLIENTQPDVIEVLPGGMPSIIRKVKERTNLPILAGGFISTSEEVKLALQAGAEAVTTSNKQLWTDFEKKDLTTFAILNKI
>CP034346.1|AZS14138.1|1551366_1551768_+|NUDIX-domain-containing-protein
MNAEKSPRVGVGAVIKDDQDRILLVLRKRAPEAEYWSLPGGKVDYMETIEDAVRREIREELGIEIAIDGLLCVTNHILPEENTHYVAPTFLAHIAAGIVENREPHALGDVQWFPINSMPDKITMTTAYALEHL
>CP034346.1|AZS14137.1|1550491_1551289_+|carbohydrate-binding-protein
MTQLKLEIQSANGAVLASASDHGQAHLVYDKNYEPGDQIVLTSENENVYLVIQLEDTMDPAFVYLTGQEIRFIIPFDEKKISYSPKTFVGDLHTLTARLATEEEIHSYKNLALNVYDQHENSTSYPHAFANVETRGESVFAARNAINGNSVNYSHGKWPFESWGINQNPDAEMTVDFGRIVEIDKVVLTIRADFPHDSHWERVTLAFSDGSQETLDLVKTHLKQTFELTPRQVKWVTLKELIKSDDPSPFPALSQIEVYGREAAK
>CP034346.1|AZS14136.1|1545571_1550275_+|DNRLRE-domain-containing-protein
MPANKMIGVRRMFKIKRAKAAIRLMSVFLTVVILQGSLMSWYGAMPGFAAAAVKTTLVSTSDSLPVQLGPIEDTYVNAGGNAGKNFGSSNLLIVKNFEADANLNRQAYMKFDLSSITGEIGSAKLKAYAVDTENSTIAVQAYGMEDASWQEDTVTWNNKPEIDHYLSSVNVGKIAGWHEWDVTSFVKQQLAKGDVASIALIQQAAKGHAVSLNSKEHTDNHPYLEISVDRADESAPSWPGGGSLQALDITENGLQLEWSGASDSVGVTGYTVYQNGSVLGKVSGSTTSYAVTGLTVGKKYTFKVEAGNAQNIWSSDGPFVTAVTPTTKLIQLRPGNIYTNGESVRFKVQTARPAVSWTVYDYQGALVQEGTATTVQNEASWTVPHSKYGYFTLQVRADLQGSDPVLLKTPFAVLASRDEPTNESSPFGVSTHLHRLPQNLTANIVDLIKAAGIRTVRGGYEWRGIEKQQGSYTFTPQPDYYMNMLDKDDFDFLFVSGYTNPFYDNDSTPYTAAGREGFANFMKAYVDHYQDQLDVVEVYNEFYGSFGDRGNGPADSKPEYYYPLLKKTYETLKASHPDLPVLGTSTAGDLKWIEDVLKLGGMQYMDGFSIHPYLYPGAPEGYEDLILNLKDLIREYNNGNLKPIWINETGWPTQRDARGVDEKTQANYLIRAHVIALANGVEKLVWYDMINDGIQNINEDNFGLLRNPDDKLGSLTPKPAYTAYATMTQMLNGASFESRDATDSDIRSYVFQKTGGSVRVIWSTAGSSIPAVIRTSHPIQITDMMGNTSTYTPFNGNVFVTLSNEPFFVVGEVNGIERDETFVLSGEEARIGDSMVFTLETDNTNSMDFAFQLDVEGHVYPVVTPSGQKAVQTIEVASGNEPGSRLVTAVLMKGNERVGLLRSGTSTLPSYTVQIRPTMETPDLNQTLRVTVNNEAKSKAIQLQKIDWRFGTQSGTEVMNDEIAAGSSTTVDIPLAAMSTGITSSLKVTVYIDGLEPYTYEGTAEFNPVPARPVTVDGTLDLETINSASTIDLSKGTVKMSGYQGAGDLSGQVWLSYDADHLYLSARIKDDVHAASMAGADIWNNDSIQFAISDGLPGEKAYWHEIGISQTPEGPQIYRWIAPPGVDKGPLTNGQLAITRDEEQKYTIYELALPWSEITPVRAENQGVISFSMLVNDNDGAGRKGFIEWGGGIGDGKLSSKFRSMQWMASSADTVLPKTELSIEGTERNGWYISEVRAVMKASDEASGVAETVYSLDDRRTWLPYKEPLTFTEDGTYTLVYRSTDRAGNIEEPQEFIFRIDRTAPTASIRYSTTEPTTGQVNAIMIPSELVTITNNDGRDSYIFSENGSFTFEFIDAAGNEGSATAIVGNIIQTATGAPGQPKLSSDNGYDTGMMDGSYKITMNMWWGNNGTDYLLYENGVLVDRQALKDDSPHAQSTVTAVFNKPNGTYEYVAELTNAFGTTRSDVLVVTVNEAAPGQPVLSHDNWDRDGNYKVSMNMWWGTNGSTYRLYENDVLIDTQALENKSPQAQSAITEIRDKPAGTYEYWCELVNDGGTVTSGKITVIVK
>CP034346.1|AZS14135.1|1543775_1545512_+|hypothetical-protein
MSNMIWSSVLQEEETRWRPFLQETLQQKHGDYNELIMLLRTPFTSPGYHTTLRNVEYVHPIRESLDYALAILDCDEERYKGRALDTLRTVLSLQDQEVDSPSFGIWSWYYDEPLDQMSPPDWNWADFIGKRLLLVLIRHGSHLPADLRQLTQQAICNSCEAIIKRNVGPDYTNIAIMGAFVTLIAGEWLEHPEFLNYGLHRLRRLYDYSMQTGAFLEYNSPAYSTVAILELSALATYTHTEEARQLANELLDATWLMIAEHFHPLLKEWSGPHARSYRTFLAPLHLSFLQMACKGNVPFVNEEQFSYGSDWYGHGVVCPERLYGLFTSIGVRELRQDLPAYHEFRTRKAYTYMTPEYSLGSFNHNVMWKQCRNLLGYVQSADQAYSYVHLRVFHDGYDFCSAVFTSEQKHDSVLYGIQFALDGGDTHVNLDPIHGRMRASDLRIRIEIGSTGELPVWEKCGEDRFLTKLGETRVLVQALHGAMNGFGDFRWNIAQDGNTVGLDYILYEGEPSEIDFHTMEEALFMFALKFSGPNEKPELKTSVTLSDYTVQALLEAPEQPITLTLAKKPADRAVLFHA
>CP034346.1|AZS18169.1|1542095_1543685_+|extracellular-solute-binding-protein
MKYVGKSTFALVMAMLLSMLLLSACGSTGTAGDEPGGSAATPEQAGDGPKQEISISMFDRGKVPTEEGTYENNRWTKWINENSPVTVNWVPVTRSQAQAKLNALIAAGEAPDLIWEYDRNYISQLANQGAIQPIGDYIEKYSTTYKAYLEKHPELEPYLKFNGEVYAVSFVRETLANHGMWIRQDWLDKLGLKAPTTVEELIDVARKFKEGDPDGNGQADTVPIAMSNSANAIDQALFFTSENQWYIEDGKMQFGRIVDRHADTLAFQKQLFDEGLIDREYITDTNFQRSAQLLTTGKAGIYFGNWDIEELNGNLVKNDPNAKLVPLESVSSKYGKDGLYQEAPPSIFTAFNSQMKEEEIKASIEFIDWMLEDGWVPVRYGEENVHYTMVDGVRQKTDPEKFQKEVAYASEYAIVMDNVLKPEMFPAMAAKDEVSQSYAKEKGKSLEIAMKNKYRRDIAYNPDFPELSQLIATFSPIAQQIEAKVITGGGSMSPADGLNELRKEWKRLGGENVDKLAQEWYEANKDNLK
>CP034346.1|AZS14134.1|1541137_1542019_+|carbohydrate-ABC-transporter-permease
MKTDPVSKLGIVSAYVFLGFVSLLTLFPFWYEIVASFSSSRAITSGEVFLWPVEFNTVAYQRLFDDGQLIMAMGNTVLVTVAGTLFNMVMTILAAYPLSRKRLVGRSWLLMLITFTMLFVAGLIPNFILIKSLGLMNSYWAVWLPGLISTYNMFVMKTFMEGLPGEIEESASIDGAGDWRILLQIYLPLCKPILAALSLFYAVSWWNSYFNVMLYVTKSTKLTVMVKLYQMVSAVDSNLLNSMNGNEGLEQVLLTPEALKAAAVVIVVTPILCVYPFLQKHFVKGVLIGSVKG
>CP034346.1|AZS14133.1|1540218_1541133_+|sugar-ABC-transporter-permease
MSGQSVWSRVIRDKHLYLMLLPVILFYFLFKYVPIVGEIIAFKNYRFADGIFGSQWVGLKHFQMIFQSSDFWRILRNTLVLNLYSLVFGFPVPIILALLLNEVRRNWYKRIVQNMLYIPHFMSWAVLGTIVVAALSPSTGIVNLLLKNLTGGETIYFMADSFWWPIAYTISGIWREAGWGTILYLAAMASIDPQLYEAAKIDGASKLRQMWHVTLPGIRGTIAILLILRMGQMMDVGLEQTLVLQNNSVLDVADVISTYVYRVGLQNMNYSYTTAIGLFQSVVSVILVLTVNRSIRLFGERGLW
>CP034346.1|AZS14143.1|1557272_1558700_+|amino-acid-permease
MEDNDIKKLRWYNVALMAFVSVWGFGNVVNNYANQGLTVITSWILIIALYFVPYSLMVGQLGSTFRHGKGGVSSWIKETMGARIAYLAAWTYWVVHVPYLAQKPQAILIALGWAVKQNGMFIKELSTLLVQSLCLVIFLLFLWMASRGVTSLRRIGTIAGISVFVMSILYIVLAIAAPSLRGIEVATPNITLKTFIPDFNFAYFTTISMLVFAVGGAEKISPYVNNTYNPSKEFPRGMLTLAIMVAICALLGSYAMGLMFNSNEIPADLKMNGQYYAFQILGEYYGLGNWIMIIYALANVLAQISALAFSIDAPLRVLLSDSDEAYVPKSLLRINERGTPVNGYIMTAILVGILIIVPALGIGNMNSLFNWLLDLNSIVMPLRYLWVFAAFMALMLMSHKFETTYQFVKNNTFGFVIGLWCFLFTAFACLMGMFPKVESFTSEWYFQISLNIATPFILLGLGLILPVLARTNRKT
>CP034346.1|AZS14144.1|1558848_1559367_+|VanZ-family-protein
MTYQRKKFLIWLLLAIICMAFIFYKSSQPYYEQDLRPSLAAHLPDKLVQSLPDIEFYYNDQLITSTMPYDFIEFFIRKGAHVSIFAVLTFLSIQTLLALKWKRASAITGGAIVALLYAISDEWHQTFVVNRTGQAIDVGIDSVGIAIVVLCYVIAGGFFHYRKRRSRPNIRF
>CP034346.1|AZS14145.1|1559538_1560234_+|RNA-polymerase-sporulation-sigma-factor-SigK
MELVSAIALFIKQLTLLVSYVKNNAFPQPLTEEEETKHLQRMAEGDAMSRNLLIEHNLRLVAHIVKKFDNTGEDLEDLISIGTIGLIKAIESFRPNKGTKLATFAARCIENEILMHLRSLKKTRKDVSLHDPIGTDKEGNEITLIDILGTEEDDVVDRVQLKMEKSKIYQNLDILDSREQEVIKGRFGLEHGGEERTQREIARELGISRSYVSRIEKRALMKLYHEFYKKK
>CP034346.1|AZS14146.1|1560508_1561477_+|LacI-family-transcriptional-regulator
MASIKDVANLAGVAVGTVSRVINNSGAVKPNTRRKVEEAIQELNYIPNEVARNFKMQRSKMVALLLPSIWNPFFSELAYYIEDELDIEGFKLMLCNSGGKPEKELYYLDMLRQNKVAGIVGITYNDIENNIGDDIPIVSIDRHFNKKITCVTSDNYEGGRLALRELVNAGARKPAFMGSVTSVFSETMNRRKGFIDEAQALGVDVVIYEKPDPIVDEDAYFKEFLSEHSDVDGIFAITDMLAASYIERARKQGIRVPEDVKVIGYDGIQDHPYFHPILSTIRQPVEEMARMAIRLLYSKIEGIPLDKQVYRLPVKFKQGETT
>CP034346.1|AZS14147.1|1561728_1562679_+|sugar-ABC-transporter-permease
MNSRTSSLDHSTIKPKRKRWSRVKRDYELYLFLLPIIILYLVFKYYPMYGVQIAFKDFSPSQGIWGSEWVGFQHFIDFFNSYNFWTIITNTLSLSFLSLLFGFPAPIIIALMLNQMLGKRYKKFVQTVIYAPHFISTVVLIGMLNVFLSPNSGIVNHVITMFGGDPILFMADEGWFRPLYILSGIWQETGFSTIIYLAALAGVNPELHEAATMDGASKWKRVWNVDIPSILPTIVILLILALGNIMSIGFEKAFLMQSDLNYGTSNIIPTYVYEMGIQKAQYSFSTAVGLFNSLINIILIVTVNRIAKKITETSLW
>CP034346.1|AZS14148.1|1562690_1563587_+|carbohydrate-ABC-transporter-permease
MNQLMKRKSRGDIWFDIFNYVLLSIVMLLVLFPLYFVLIASFSDPNYIYSGEVWLFPKGFTLDGYERIFNDSSIWIGYANSILYATLGTIIGVAVTVFAAYPLARKDLVGKSAIMWFLMVTMFFSGGLIPTYLLIKDLHMLNTIWALVIPGAGGVFNVIIVRTFFQSSIPDEMWEAASIDGCSNTRFFWSIVLPLSKSILAVMVLYHVVGFWNGFFDALIYLNDESKYPLQLVLRNILVQNQVNSGMMIDVESYAAKMRVTELIKYGVIIVSSLPLLMLYPFLQKYFVKGVMIGSIKG
>CP034346.1|AZS14149.1|1563709_1565344_+|extracellular-solute-binding-protein
MNSLFKSAGIVVLAGAFVLSGCSGNGNSGKGSNNQANSSVQDANFNKTGLPIVNDPVTIKMVSPKAALAPVFSEMEIFKRLEKETNVKIKWENIPDTDYAEKKNLLIASEDLPDAFYAAGFTDYELINYGKDGTIIPLEDLIDQYAPNLKALLERRPDIKSSITAPDGHIYGLPSWEDNNLGTNPFFHVINKSWLDKLGLKVPQTLDEYTEALLAFKTQDPNGNGKQDEIPLSFMHMQWCMDIAGIFGAFGLPDNLEHRVVRDGKVIFTANQPEYKEALKYFNEKWYKQGLIDPESFTQDAAQYLAKGKTKDETLGSYIWWEIEEVVGTERSKDYVLLSPLKGPNGDQTIGRANGGGPGRAAFVITKEDKNPEITMRWIDQQYEPYMAAQIHWGPLDVVFKKDENGKLVNLPLPEGTSAGEFRQKVAPGSGGPGVITFEDFGKVVDMEPRAQQRAKDLEQYYNAYMEKENYPSIFFEPEELDKINKIEPELIKFVNTQRGKFIVDGNVDEQWDSYVKTLEKMGLNELMEIYQTGLDRYNANLKQ
>CP034346.1|AZS14150.1|1565371_1567840_+|glycoside-hydrolase
MLDVIAIGEVLIDFTPAGRSARGNEQFECNPGGAPANVAAALSRLGARSALISKVGADQFGSLLHDTLLGIGVDVSGVSYTDEASTTLAFVHLDDKGDRSFSFFRKPGADTFLHVKDVPLEMLETSRVLHYGTLSMTHEPARTATRTAVLKAKEAGVLLSFDPNVRFALWESKEEAKQNILWGMKHADILKISEEELSFITGTSDVEKGASELAHQFDIGLIVVTLAEKGCYYRLSGQEGYVPGFEVKVIDTTGAGDAFLGCLLYKILETGSSLNDLTNQQIVSMLTFANAGGALVTTRKGALGAMPTTEEINQMIESKKQNMDERFRPGFHFSPPSHWLNDPNGLVFYEGSYHLFYQHHPYGNKWGPMHWGHAISKDLVHWEHLPIALFPDEHGAIFSGCCVVDWKNSSGLFEDSHGLVALFTHADTHPETGQPRQRQSLAYSSDKGHTWHKYEGNPVLSEDDLVDFRDPKVFWHAQSERWIMVIVAGDHVRFYQSENLREWSLTSEFGKGVGSHDGVWECPDLFELPIDDTGRSKWVLIISIGDNPDCPEGSRTQYFIGEFDGKSFINDNTADHIMWLDYGRDNYAGVTWSDVPEQDGRRVIIGWMSNWKYANETPTGAWRGAMTLPRALSLTDRDGSVTLTQMPVRELEQLRKGSIRWNDVTIKPEAPLLQKVNEDLLEIEADIDIRTSKEVHIRLKSSGQSEVVIGYDPERQWLFIDRSKSGVTDFHSLFPTKHGAGLVALNDKIKLHIWLDRNSVEVYANHGLVTLTDQIFPDAPIEQVEVSTQSGQVVLHSLQIHMLKSITIPDSTAELTVGRDNV
>CP034346.1|AZS14151.1|1567836_1570116_+|glycoside-hydrolase
MSCPADDHGLIMHWPFDEGAGASALEKVSQVRDEIQYVFNQAEFTEPTDPQWRQGVMGSGLLFDGYSTSIAHTVKEGTTTNGREPLSALSIGVWVAPRTYDWGYEGKLAAIVNRHNMDCRQGYLLGMFRHGSWSFQVGLEEGNWMEIWSPDGHELPKNEWSYLNAVFDGNQGEIKLYLNGSEIASSSVPRGSRLAEAAGTDLLIGKNNHSSQWGGVFNLQMFSGIIDDLKIYNRALSAEEVAASYRHVLDASQGGAKPQLQYDEIKLDRTPLMLDRHRPQYHVSPPAHWMNEPHAPIYFDGQYHLFYQHNPLGPFFYQIHWGHWVSKDLVHWRDLPVALAPEKDQLAPDGIWSGSAAYDADGLPVLFFTAGNDSASPNQSVALARSTYTRDGDPDLVQWIKHPEPLIVQEKGMGAFGDFRDPFVWKDDDGWYALVGSGIDGEGGAALAFASKDMMNWTYKGPFYQADIQKFPYLGPIWELPVLLPLGTDKQGENKHLLLVSPVGKGADVEVFYWIGQLDKERLSFIPDREEPELIDVGDFHFTGPSGMVDPKTGRNIVFTIAQGDRTSELEYKSGWAHNAGLPLGVYLRDDGRLGIEPIQELQSLRGAKRISFSDKSLTEANELLRDVQGDMLEIQLELEPASATQLGIKVRRTPDGEEESLLYYDFNEAKLLVDRTKTTLHPGEKCRGVQGGKLELPGENLKLHIYLDRSMVEAYANGLKSLTTRVYPSREDALGLEIWGDGELVVKSMEVWDMQSIW
>CP034346.1|AZS14152.1|1571218_1572970_+|indolepyruvate-ferredoxin-oxidoreductase-subunit-alpha
MIALMMGNEAIARGAYEANCKIISSYPGTPSTEIVESISMYEGIYAEWAPNEKVALEVAAGASIAGVRSLTTMKHVGLNVAADPFFNMTYEGVNAGMVIITADDPGIHSSQNEQDNRIYASHAKMPLLEPTNSQECKDMMVEAYEISERFNTPVMFRTTTRVSHSKSIVSFDEDAEAEGEYKEYRKNKLNRLLLPTISRKRHLEIEDNLLDIQTYSNQSSLNAIEYHSPDIGIVANGISYQYAKEVFGDTVSYLKLGMSYPFPDKKAKEFASRVKRIIVVEEGEPFIENALKTLGVDCIGKDIIPLCGELNPEIIRKAITREEISTYEPVSVPARPPRLCAGCAYLGLYSAVKSQRDVISAGDIGCYTLGGTEPIKALDTVLCMGASISMATGMQRTQDFKPMGKKVFAFIGDSTFFHSGMTGLLNAVYNKTPIVVCILDNRSTSMTGNQENPGTGKTLQGDMSNFIRIEDIVLALGIKPDNLIIVDPTNVSETRQSIELAKASTEPFVIISRHPCELIKPQTEIDSKAKYYITEDCVSCMKCTRLGCSAIKIVDKKVVIDRQECRGCSICPQVCPYNCIKEA

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Crispr_ID: CP034346_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034346_4

2637399-2637472

Orphan

Consensus_repeat	Method
TAACGAAACTATAGATCGTTATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034346_4

>merge|CP034346|4|2637399-2637472|CRISPRCasFinder
TAACGAAACTATAGATCGTTATTTCCGCAAAAGCAGCGCTTAATAAAATTTAACGAAACTACAGATCGTTATTT

>CP034346|4|4|2637399-2637472|CRISPRCasFinder
TAACGAAACTATAGATCGTTATTT	CCGCAAAAGCAGCGCTTAATAAAATT
TAACGAAACTACAGATCGTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
CP034346.1\|AZS14967.1\|2637936_2640036_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
CP034346.1\|AZS14958.1\|2626485_2627010_+\|DUF386-domain-containing-protein	unknown	unknown	gnl\|CDD\|377217
CP034346.1\|AZS14960.1\|2627931_2628936_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
CP034346.1\|AZS14963.1\|2630737_2631721_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
CP034346.1\|AZS14968.1\|2640053_2640833_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
CP034346.1\|AZS14957.1\|2624738_2626418_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP034346.1\|AZS14970.1\|2642238_2644824_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
CP034346.1\|AZS14975.1\|2649129_2649543_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
CP034346.1\|AZS14959.1\|2627212_2627755_-\|hypothetical-protein	unknown	unknown	unknown
CP034346.1\|AZS14966.1\|2634461_2637380_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
CP034346.1\|AZS14973.1\|2646574_2647549_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|163057
CP034346.1\|AZS14974.1\|2647781_2649035_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311036
CP034346.1\|AZS14964.1\|2631992_2632535_+\|outer-spore-coat-protein-CotE	unknown	unknown	gnl\|CDD\|371168
CP034346.1\|AZS14969.1\|2640825_2641797_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
CP034346.1\|AZS14961.1\|2628963_2629773_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
CP034346.1\|AZS14965.1\|2632917_2634366_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373045
CP034346.1\|AZS18245.1\|2641800_2642061_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
CP034346.1\|AZS14971.1\|2645031_2645592_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
CP034346.1\|AZS14972.1\|2645594_2646269_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
CP034346.1\|AZS14962.1\|2629744_2630581_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673

Protein	Function_ID	Function_description	E-value
CP034346.1\|AZS14967.1\|2637936_2640036_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
CP034346.1\|AZS14958.1\|2626485_2627010_+\|DUF386-domain-containing-protein	gnl\|CDD\|377217	pfam04074, DUF386, Domain of unknown function (DUF386). This family consists of conserved hypothetical proteins, typically about 150 amino acids in length, with no known function.	9.81403e-41
CP034346.1\|AZS14960.1\|2627931_2628936_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	5.37299e-50
CP034346.1\|AZS14963.1\|2630737_2631721_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	3.39767e-42
CP034346.1\|AZS14968.1\|2640053_2640833_+\|SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	1.17325e-07
CP034346.1\|AZS14957.1\|2624738_2626418_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP034346.1\|AZS14970.1\|2642238_2644824_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP034346.1\|AZS14975.1\|2649129_2649543_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.72754e-23
CP034346.1\|AZS14973.1\|2646574_2647549_+\|AAA-family-ATPase	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	1.61306e-146
CP034346.1\|AZS14966.1\|2634461_2637380_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
CP034346.1\|AZS14974.1\|2647781_2649035_+\|hypothetical-protein	gnl\|CDD\|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
CP034346.1\|AZS14964.1\|2631992_2632535_+\|outer-spore-coat-protein-CotE	gnl\|CDD\|371168	pfam10628, CotE, Outer spore coat protein E (CotE). CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore and spore resistance to lysozyme. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance.	7.54465e-76
CP034346.1\|AZS14969.1\|2640825_2641797_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	2.34582e-160
CP034346.1\|AZS14961.1\|2628963_2629773_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.70734e-110
CP034346.1\|AZS14965.1\|2632917_2634366_+\|hypothetical-protein	gnl\|CDD\|373045	pfam14395, COOH-NH2_lig, Phage phiEco32-like COOH.NH2 ligase-type 2. A family of COOH-NH2 ligases/GCS superfamily found in the neighborhood of YheC/D-like ATP-grasp and the CotE family of proteins in the firmicutes. Contextual analysis suggests that it might be involved in cell wall modification and spore coat biosynthesis.	2.75298e-110
CP034346.1\|AZS18245.1\|2641800_2642061_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	2.06961e-40
CP034346.1\|AZS14971.1\|2645031_2645592_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	5.48474e-31
CP034346.1\|AZS14972.1\|2645594_2646269_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	4.38283e-40
CP034346.1\|AZS14962.1\|2629744_2630581_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.22321e-65

>CP034346.1|AZS14966.1|2634461_2637380_+|DNA-mismatch-repair-protein-MutS
MANYTPMIQQYLSVKAQAKDSFLFFRLGDFYEMFFDDAILASKELEITLTGRDGGTSEKIPMCGVPYHSAENYIQRLIEKGYKVAICEQVEDPATAKGVVRREIVRVVTPGTIMEGKTVAEHTNNYILCVTEQGGNMALVVCDLSTGELYVTSAPANKEWLRDEIGLYDPSEIIGDAELLEWIKSQASTIGKPVVYTPWDRGKEETGRKQFGEAAWLRLEPERQQGISLLVGYLSETQKRSLGQLTKITAYEPEQYMILDPFTRRNLELVETVRERSKKGSLLWLLDKTETSMGARLLRRWVDKPLLQRSKIEERLEAVDALHRDFILREDLRILLGEIYDLERLTGRIAFGSANGRDLIALKSSLRQAPALKQLCATSASDTLHKIAASIDICEDLAEMIETSIADEPPISLRDGGIIKKGFHAHLDELREAGMNGKRWIAELEVSERKLTGIKSLKIGYNKVFGYYIEVTKANLSMLPEGRYERKQTLANAERYVTPELKEKERLILEAEEQMVDLEYALFQEVREKIAAEITRLQSLAERIAEIDVYRSLAVVASDGKFVRPVLSEGYDMVIEQGRHPVVESVLNDAAFIANGTDLRKDAASILLITGPNMAGKSTYMRQVALISILAQIGSFVPAGKAEIPLIDRIFTRIGAADDLIGGQSTFMVEMADIQIMTEKATPRSLIIIDELGRGTSTSEGMAIAQAVIEYVHDHIGCKALVSTHFHELAMLEKSLANLHNYSMAVQESGDKVHFLRKLIPGAADSSYGIYCARLAGLPEGIIDRAYGLLQGFELSAAEAAAAQQEDHDASVTGNRGTNGASLGMSRQHTSEDVKSVVSSQQAFADRNGIDSDVSEAGADYRALQSSDMAGTSQPEGLGISGSGTGSMGVPLGEVDTSNPSEVQVAAGEVVQLSMFEDDLPEPRHGKQASAVHQPAALKQMVSMVKHADLMNMTPIQAMQLINELKMKANEL
>CP034346.1|AZS14965.1|2632917_2634366_+|hypothetical-protein
MNSKKSHILRICMPTSASSREMTYKLNSLAGPYRVLQDPVANPRPWGNESATAMNNVVYGLPEAYLADEVVEWNINRELGRYMKLTSTERERRLVTAGLLASFESSRSGRQRIYKRRFVVSVFHLRTLRAIPLGRSGVVRSPGLEPEQGTPLCRRLGKTAIRALYAFGLDMGDVVIAAGEEGQYTVEEVSPIPDFTDTATVQLYADAMADHLRELDQFSNEEAEVLIGMDPEFILFNHNTGKVVPASRFLSHHGEAGCDVLRFQGRRLLPLAELRPAPGRDPEEVVRHLLHAFRTANTYISDRNLLWQAGGMPQRGFPLGGHVHFSGVPLTSEFLRVLDNYLALPVFLLEDNSSFRRRPNYGFLGDYRIKSYGGFEYRTLPSFLISPLVTKGVIALAKLIAEDPEHFKRRPLQNEEVFRAFYSGQPGRIRQSILPLLSDIVEAEGFSRYEKYLGPFLAAVKSGVTWDESTDIRRPWKIQNHS
>CP034346.1|AZS14964.1|2631992_2632535_+|outer-spore-coat-protein-CotE
MSLKYQSREIITKAICGKGRKFSTVTHTVTPPHKPSSILGAWIINHQYEAVAAGDGIEVIGTYDINIWYSYDKNSQTEVAKETVSYVDNVPLNYLDSRHRPSTVEVTAEATQEPSTVEASVTGDGRVSIRVEREFAVELVAETKLNVLVVPGNAEDKEYDFGSDSEDYEDLDPDLLDDEL
>CP034346.1|AZS14963.1|2630737_2631721_+|aromatic-acid-exporter-family-protein
MGFRVIKTAIATVLAIIISDAFNIEGALSAGLLAILGVDVTRKRSIATVSSRFFASILGLIMAFILFYILGFHIWVLAVYILIAFPLLSRANFKEGIVTSSVVVFRVFGGEVISLQVMATQIELLLIGLGSAMIVNLLYMPKEEDKLFKIRLKVDGLFSVIFKHIATSLRDPEHLWDGKELIEAGKLVDEGLASANRALENQLISPNEAWNVYFYMRKQQLDRIEGMLEMISLVYERIPQGEAVATLFEQLSVDVTREFYSGQTEEMQIQLDQQFKQMRLPASREEFELRAHLLQLSRELAYFLEIAKKDKSRRTVQNSAGADAEES
>CP034346.1|AZS14962.1|2629744_2630581_+|ABC-transporter-permease
MSLTQTLKVNHGEKDWIKEQWHRHRRQKSMRRRLVLSTQLALLFIFIGLWELAGQLKWIDVLIFSYPSKVARQIAKDALSGELWPHLGITVAETAVGFLLGTLIGTALAVVIWWSPFLCRVLDPYMVVFNSMPKVALGPIFIVMFGAGYTAIVITTLSITVIVTTLVVYNSFNEVDQNLIKVIRTFGGTRRDVFLKAILPASFPTIVSTLKVNVGMAWVGVIVGEFLVAKIGLGYLIVYGFQVFNFTLVLSSLVIIAIVATAMYQLVVYIERKLLKER
>CP034346.1|AZS14961.1|2628963_2629773_+|ABC-transporter-ATP-binding-protein
MVPVVELKDLDHLYLTDREAILALKGINLAVNAGEFISLVGPSGCGKTTLLSLIAGLLSPSRGQVLLHGKPIMGPTPEIGYMLQQDYLFPWRTILSNAQLGLELTRRLNERSTLMVMELLEGMGLGNTANQYPHQLSGGMRQRVALVRTLATDPDLLLLDEPFSALDYQTKLQLEDLVVDTLRQRGKTGILVTHDLSEAIAVSDRVIVLAAKPGRMKSTYDIPDNIRKLQPFYAREEEGFNELFQEIWRDLETSEERGMKDVAHTNFEG
>CP034346.1|AZS14960.1|2627931_2628936_+|ABC-transporter-substrate-binding-protein
MIKRNAMLLIALLVLFTSGLAGCAGGSGAKIRIGEVTRSVFYAPEYVALEKGFFKEEGLDVELQTTAGGDKTMTALLSGAIDVALVGAETSIYVYQQGAEDPVINFAQLTQTDGTFLVAREETGEFDWSKLNGSVFLGQRKGGMPQMAGEFTLKKHGIDPHADLELIQNIEFANIAAAFASGTGQYVQLFEPQASIFEREGKGHVVASFGTESGQLPYTVFMTKQSYMNKHKDAVQKFTNAIYKAQMWVGSHTPEETAKTIAPYFKDTDMDILTSSVKRYLEQGTYASTPALHEEAWNNLLDVMDSAGELKGRVEMAKVVNNDFAESAVKASSK
>CP034346.1|AZS14959.1|2627212_2627755_-|hypothetical-protein
MISKVKRWELDSLSLEEVCHVCFEPLIRAYKQRMADHTLENSSMIKEKFYSDLTDGQRALFSFHVFYDHAVESLEEFYWWSAYFFAQPRIWSAIKSGVNYYRDEHMLQILESVESVLKTYHHPRSLDEFNVTREDIVRNQELFELISPLSNKFNEASPLTIQKIGSYIRDNLKEFILIED
>CP034346.1|AZS14958.1|2626485_2627010_+|DUF386-domain-containing-protein
MILGDIRNLDQEKHLYPSAVRRGLEYIMLHQLEDAPPGKYELESEEMFAIVQEYTTMPICGQQYESHYSYIDIQYLVSGMERIGWKRYDESLKISVNRLCEDDIQFYEDGFSLSETDKLSGKESWQREGSDLIMEPGLFAVFFPTDLHRPCGHVHRESRIRKIVIKIHRSLFMI
>CP034346.1|AZS14957.1|2624738_2626418_+|ribulokinase
MDVRYVLGIDYGTESGRVVLVDVSDGQEIAWHVTPYPHGVMDVELSGTGVKLGAEWALQHPQDYVEVLRKSVPKVLEISGAQPEQIIGIGVDFTSSTILPVDQDANPLCYAEEFRGEPHAYVKLWKHHAAQHEANLINELAASRAESFLGRYGGKVSSEWMTAKALQVLRERPDIYDAADRFVEAADWIVFVMTGALKRNSGCAGYKSLWHRREGYPSTEFYRNLDPRFASFAEVKLKGDIVTLGESAGLLTEEAAGMMGLRPGIAVAPGIIDAHAAVPGVGATTSGDMVLSMGTSLCHLLLSDQEIQVEGICGIVEDGIIPGLYAYEAGQPAVGDMFGWYVKQGIPAYVERQAEQAGVSVHEWLEARAAKLLPGESGLIALDWWNGNRSNLVNSELSGMIIGLTLQTRPEEIYRALLESAAFGTRHIIEAFEAVGVEVQELYACGGLPQKNKLLMQLYADITGREIKIAASAQTPALGAAMFGAVAAGSLRGGYDTIQEAAKHMVHLQEQSYSPNTAHQAMYDELYREYRRLHDYFGRGSNYVMPRLKQLQKKAVTTS
>CP034346.1|AZS14967.1|2637936_2640036_+|DNA-mismatch-repair-endonuclease-MutL
MAKIVVLDEHIANQIAAGEVVERPASVVKELVENAIDAGATSIEVQAEEGGLSLIRVIDKGSGIDPDDCEAAFYRHATSKLLQGRDLFQIRSLGFRGEALPSIAAVAKVRLVTANSDQGLGRAIEIEGGSLKLNEEIATPQGTDITVKELFYNTPARLKYMKTIQTELGHISDVMYRQALSHPEIAFTFRHNGNTLLQSQGGGDLLQVIAAIYGVNTSKGMVAIEAENLDYHLTGYIGRPELTRSNRSGMSTIVNGRYIRNQGLHQAVLRAYHTLLPINRYPLGVLMLDMHPSLVDVNVHPAKLEVRFSKEPELNGFIEESIRSLLSEQVLIPQVVKQNIGRGNTQAVIQEQFHFTRPEVTKDAEEGREGTSGAVGGSAASDVSGGVDNAAAREQAAAGREAAPASGGAAGPGAGAGYSAPAGGSAAAYALREQAAGGYASGSGGGASAAAASRRPAASGAYAERAPGAASPGSYAPGGRGQAAPAARGAAPRALYGAPQEAPELPAFPELELIGQHHGTYLIAQNQEGLYLIDQHAAHERVNYEYYYEKFGHPADASQELLLPITLEFTPSDSEKLKERLSWFERVGVILEHFGGGTFRVVSHPYWFPSGEETSIIEEMAEWVLSERAIDLSKLREKSSTLVSCKASIKANQKITVEEADTLLQRLAACKQPYTCPHGRPIIISFSNYDLEKLFKRVM
>CP034346.1|AZS14968.1|2640053_2640833_+|SAM-dependent-methyltransferase
MIITTGDHSAAEPVQRAMALSKKSGARFVPRNRTSLTKLAKRYGDDDILVILEGGARLHRTGSEPLTFHPSMAFVRAKRLLRGEPDTMLEAAGVRPGDKIIDCTAGLGADSSVFSLGTGPSGHVISLEDSLSLWALLTEGLTYYESGVAEYNAALRRIETRHVHHLQALRGMPDKSADIVYFDPMFRDPIMESAAISPLRTFANNEGLSQETVQEACRVARRSVVLKEKKGSEEFARLGFQEVGRAHTKIVYGVISLDD
>CP034346.1|AZS14969.1|2640825_2641797_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MINDKPNLLVLVGPTAVGKTKLSIEIAKAFSCEIISGDSMQVYRGMDIGTAKIQSSEMEGIPHHLIDVLNPDEPFSVAQFQDSCRQLIPEIGERGKLPFIVGGTGLYVESVCYEYQFTDTGADEGFRSQMQNIADEEGNEALHARLAAVDPQSAERLHPNDVRRVIRALEIYHMSGTTLSSQLESQNKQSPYNLCIIGLTMDRQMLYNRIEQRIDEMMDAGLVNEVRSLLGRGFTRNLISMQGLGYKEILEHLEDGVPLEDAVTKLKRDTRRFAKRQLSWFRHMKDISWVDVTDHKNFSGNLEAVRAIIAGKFQLNLEYKSKY
>CP034346.1|AZS18245.1|2641800_2642061_+|RNA-chaperone-Hfq
MLLGVRRMNKSINIQDTFLNQLRKENIPVTVFLTNGFQIRGTIKAFDNFTIVIDSDGRQQMVYKHAISTFQPQRNVSLMQESAGEV
>CP034346.1|AZS14970.1|2642238_2644824_+|PBP1A-family-penicillin-binding-protein
MSTKRPSRLERSSKPSHKPAKPKGTKKRKLTARRIMWTLFFTVAIAIICAIAGYLYITVNGERILSENEDKMFIYETSKVYDRNGNMMGELSVDRSEPVDSDKIPDLVKKAFVATEDRRFYEHKGVDLWSIGRAAVKDVMARSLVEGGSTITQQLAKNIFLSRDKTFFRKATEMSIAMALENHKTKDEIITLYLNRIFFGQKAYGIKAASQRYFGVSNLEDLELWQIASLAAIPKGPSKYNPVSNPELSKQRRAVVLDLMFEQGYISAEERDEAKAVDYDYTPPVKNESYLAFKDYVIKEAEEKYGLTEDDLNRGGYKIYTTMDAQAQKAVEKAFDNDDFFEKSKDDQPVQASIVIMNHENGSLIALLGGRDYQRKGFSRIESRRQPGSAFKPIVSYGPALESGKFNVNSQISNEKQCFGDYCPRNLHGYSKTIDLTTALTKSENIPAVWLLNQVGVKTGVKYAEEMGIKMDKNDTNLAIALGGLTYGTNTMEMAGAFSVYANGGEYNEPYSIKLIKDHDGKDLFKYNPPKPKRVFSETTAYHMTQMLQNVVNDGTGRRAKIDRPLAGKTGTTQHGIPGLKSSKNRDVWFVGYTPEWTAAIWEGYDNPDKNHLLNGSSGQAASLFSTIMKEALKGVPVKDFPVPSSLEKTPEPPPEEVQITAPTDLNGSYDEGTGTITLNWTGVDQPGVNYRIYKREATAAEFTRYMDVVTTSAEDLTVTPGTDYEYYVTVYDPSSDAESQPSNIAQVSVPAEDSGGEGEIIPPPDGGNTSNPGEGGNGEVTPPPSGGTGESGNGGSQVPPGGEGTGPGNGSGTESGSGGNDGSEPSGTTPTEPGGTNPPDSGTDQSGNSTGGQNSGTSGM
>CP034346.1|AZS14971.1|2645031_2645592_+|DUF402-domain-containing-protein
MKRKFGDRANWRRVTQRQFKSKYVEGDTFTGYATFYGINALRDPLWKTYGGHTFRIADKGYTWLQYYPKGAHYVVTAMFDDRGSIVEWYIDVCKTQGVTDQGVPWFDDLYLDIVVLKNGEVFLLDEDELDDALSRGLISVRDYDLAKETARDVMKLIKNQAFPYFAMSLEHYRTGYVQSDSSNPGG
>CP034346.1|AZS14972.1|2645594_2646269_+|YdcF-family-protein
MAQYRKSSPYVGNRRRSKSKFVWVLRVGLTCILIGILWSVYALAQIGSVYRNTAATTAASEPSDVGIILGAAMWGDQPSPGLQERLEQGLADYKAGRFHTFILTGGLDKPDYRYTEAEGMAIYLEQHGVPKEAILLENKATSTYENLKFSKEIMEEQGLTSAVIITHTFHGNRSYEIAKALDYSSPKLSLTETHVLKRVPTILREILAYTKWKIDSVLLAIGWK
>CP034346.1|AZS14973.1|2646574_2647549_+|AAA-family-ATPase
MSGRVMARSGPPEERPSRQINIVLRNSDPPVVSQSVPDSEAHPTAKVMPQNSLFTDLQKELDGLVGLDHIKELMYEIFALLQIASMRSEAGLLSGAQVFHMVFKGNPGTGKTTVARLVAKFFQKMGILSKGHLIEVERADLVGEYIGHTAQKTRDLVKKAMGGILFVDEAYSLARGGEKDFGKEAIDTLVKAMEDSKNQFILILAGYCDEMDFFLDTNPGLPSRFPIVMEFPDYTIDQLIQIAEGMAKERDYILMPQAIVKLKQHLLREKMEGEHVFSNARHVRNVIERSIRHQAVRILNQYSGGSPGKLELMTIRTEDLKLDK
>CP034346.1|AZS14974.1|2647781_2649035_+|hypothetical-protein
MAVFSEDIVTRMEEAERQAEQQFRVIDRIVDRNQFKVIEAFQKHHVSDFHFAGSTGYAYNDRGREVLDLVYADVFGAEAALVRPHFASGTHTISTALFGVLRPGDELLYITGKPYDTLHKVIGKPGDGTGSLQDFGITYDDVALLADGTVDWGTVADKLTPQTKVIGIQRSRGYDWRDSFTVEQIGEMVKRVKSLSPNCIVFVDNCYGEFTEEQEPTEVGADLIAGSLIKNPGGGLAETGGYICGRAELVELAANRLTAPGIGGEVGAMLGTTRGIYQGLFLAPTIVGQAVKGSILAAALFERVGFDSKPRWNDKRTDLIQAISFSSSEHLIAFVQGIQRAAAVDGHVVPEPWDMPGYEHPVIMAAGTFIQGGSLELSADAPIREPYIAYMQGGLTYSHVKFGLLTALQTMKDRHLL
>CP034346.1|AZS14975.1|2649129_2649543_+|MerR-family-transcriptional-regulator
MSDEIRRNMALFPIGIVMKLTDLTARQIRYYEQHELIVPARTSGNQRLFSFNDVERLLEIKALIDKGVNIAGIKQVIAPANGESEEATVMTRDTEEKRKEIPTSELYRMLKQELFTKQRPGQVSLIQGELSRYFKLK

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Crispr_ID: CP034346_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034346_5

3709701-3709775

Unclear

Consensus_repeat	Method
AATAGCGATATGTAGTTTCGTTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034346_5

>merge|CP034346|5|3709701-3709775|CRISPRCasFinder
AATAGCGATATGTAGTTTCGTTAGAATTTATTTACCTCAAAATGTAGGGCAATAGCGTTATGTAGTTTCGTTAGA

>CP034346|5|5|3709701-3709775|CRISPRCasFinder
AATAGCGATATGTAGTTTCGTTAGA	ATTTATTTACCTCAAAATGTAGGGC
AATAGCGTTATGTAGTTTCGTTAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP034346.1\|AZS15851.1\|3712138_3713110_-\|iron-hydroxamate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238558
CP034346.1\|AZS15846.1\|3706793_3708224_-\|erythromycin-esterase	unknown	unknown	gnl\|CDD\|350610
CP034346.1\|AZS15845.1\|3705847_3706714_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP034346.1\|AZS15849.1\|3709859_3710417_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780
CP034346.1\|AZS15844.1\|3699397_3699982_-\|phospholipid-methyltransferase	unknown	unknown	gnl\|CDD\|226472
CP034346.1\|AZS15841.1\|3695729_3696557_+\|SCP-like-extracellular	unknown	unknown	gnl\|CDD\|131955
CP034346.1\|AZS18335.1\|3711092_3711986_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP034346.1\|AZS18334.1\|3700179_3705390_-\|licheninase	unknown	unknown	gnl\|CDD\|366548
CP034346.1\|AZS15857.1\|3718027_3718768_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP034346.1\|AZS15853.1\|3714963_3715320_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP034346.1\|AZS15843.1\|3697949_3698651_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP034346.1\|AZS15856.1\|3717276_3718035_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP034346.1\|AZS15852.1\|3713251_3714910_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
CP034346.1\|AZS15855.1\|3716836_3717262_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP034346.1\|AZS15848.1\|3708648_3709170_-\|hypothetical-protein	unknown	unknown	unknown
CP034346.1\|AZS15850.1\|3710416_3710983_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780
CP034346.1\|AZS18333.1\|3698738_3699398_-\|inositol-phosphorylceramide-synthase	unknown	unknown	gnl\|CDD\|239481
CP034346.1\|AZS15847.1\|3708433_3708628_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
CP034346.1\|AZS15842.1\|3696892_3698167_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP034346.1\|AZS15854.1\|3715484_3716423_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381300

Protein	Function_ID	Function_description	E-value
CP034346.1\|AZS15851.1\|3712138_3713110_-\|iron-hydroxamate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.90103e-77
CP034346.1\|AZS15853.1\|3714963_3715320_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.51594e-41
CP034346.1\|AZS15845.1\|3705847_3706714_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.11642e-30
CP034346.1\|AZS15849.1\|3709859_3710417_-\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	4.52749e-34
CP034346.1\|AZS15844.1\|3699397_3699982_-\|phospholipid-methyltransferase	gnl\|CDD\|226472	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism].	5.27993e-34
CP034346.1\|AZS15841.1\|3695729_3696557_+\|SCP-like-extracellular	gnl\|CDD\|131955	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.	3.08233e-64
CP034346.1\|AZS18335.1\|3711092_3711986_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.5767e-56
CP034346.1\|AZS18334.1\|3700179_3705390_-\|licheninase	gnl\|CDD\|366548	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8.	1.24715e-20
CP034346.1\|AZS15857.1\|3718027_3718768_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.22187e-69
CP034346.1\|AZS15843.1\|3697949_3698651_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.76178e-88
CP034346.1\|AZS15856.1\|3717276_3718035_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.4687e-144
CP034346.1\|AZS15852.1\|3713251_3714910_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.01701e-27
CP034346.1\|AZS15855.1\|3716836_3717262_-\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.77588e-10
CP034346.1\|AZS15846.1\|3706793_3708224_-\|erythromycin-esterase	gnl\|CDD\|350610	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins. This group contains erythromycin esterase, which shares conserved active site residues of the Tiki/TraB family. Erythromycin esterases (EreA and EreB) disrupt erythromycin via the hydrolysis of the macrolactone ring. A critical catalytic histidine acts as a general base in the activation of a water molecule. Macrolides act by inhibiting bacterial protein synthesis by binding at the exit tunnel of ribosomal subunit 50s, blocking the translation of the polypeptide. Erythromycin esterase, typically found in integrons and transposons, confers antibiotic resistance through the disruption of the drug ring structure. EreB substrate profile is substantially broader than that for EreA, being able to also metabolize semisynthetic derivatives such as azalide azithromycin.	8.77982e-75
CP034346.1\|AZS15850.1\|3710416_3710983_-\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	2.67018e-34
CP034346.1\|AZS18333.1\|3698738_3699398_-\|inositol-phosphorylceramide-synthase	gnl\|CDD\|239481	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.	7.18997e-22
CP034346.1\|AZS15847.1\|3708433_3708628_-\|transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	7.35133e-26
CP034346.1\|AZS15842.1\|3696892_3698167_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.75656e-48
CP034346.1\|AZS15854.1\|3715484_3716423_+\|aldo/keto-reductase	gnl\|CDD\|381300	cd19074, Aldo_ket_red_shaker-like, Shaker potassium channel beta subunit family and similar proteins. This family includes voltage-gated potassium channel subunits, beta-1 (KCAB1B), beta-2 (KCAB2B) and beta-3 (KCAB3B). KCAB1B and KCAB2B are cytoplasmic potassium channel subunits that modulate the characteristics of the channel-forming alpha-subunits. KCAB3B is an accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit. The family also includes Drosophila melanogaster Hk protein, a founding member of aldo-keto reductase family 6 member B1 (AKR6B1), as well as voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa, founding members of AKR6C1and AKR6C2, respectively. Hk protein, also called hyperkinetic, is a beta subunit of Shaker (Sh) K+ channels and shows high sequence homology to aldoketoreductase. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	2.72827e-171

>CP034346.1|AZS15848.1|3708648_3709170_-|hypothetical-protein
MSWFKRKSVQDERIVNLKNQIAKEAWILTLIICSISVIVKTFFFMEKQSVWVELAILIVTGLYSMIRSVSSGVYSDEVEVHDQTHRFSVTKKQLVTGLASGLFLALFFGFRSAYLFADGDGALQVKYFLSVFAASLIMYIPFFVMLTAVSHLVMNKLSKRRSANDLDDSDLIE
>CP034346.1|AZS15847.1|3708433_3708628_-|transcriptional-regulator
MKNLKMKMARVEKDLSQDELAQIVGVSRQTIGLIELGKYNPSLSLCVSICKALGRTLDDLFWEG
>CP034346.1|AZS15846.1|3706793_3708224_-|erythromycin-esterase
MIQMNKRKVAGVIAATVLSTQLWASAVPVYAQETNPVGEAVSQQVARTNQETLADWEAWTKDHVYRLETIKPVEGKIEPGSFKDLEMLKPLLHDKRIVFLGESSHGVAEFNQAKTRLIQYLHEEMGYNVLAFESGLNNASIAYGNAGSQSAERTMKDSIFGVWWSKEILPLFDYLKDTQTSENPLMLTGFDIQTQFPLMDGKWLTDAKQAERLKQTEEKLAAYAGGTDLEAYQKDKNHLMGVYNGALRILKAKGTEEHIKAFYPSNPMLMKQLERSLQDRIRVADEYIEISIKSNRSLEEGDYAGYAEHLLKSMEWRDQAMLDNLIWLATEVYPNEKFIVWGHNDHIQKAHSEVMGTYYPVKQMGELLPEEWKKYSYVLGLYPVSGRTADNTGAIHDVLPLEEGSIESIVSKASQSPYTFIDLKYRNNERGNSWMFEPRYTYSWGRIPESLVARDQYDGLLLIDDVHPPQYMRGNK
>CP034346.1|AZS15845.1|3705847_3706714_+|AraC-family-transcriptional-regulator
MEGLEMEINFYESELFYISREKKIHSSIPSHHYHDAYEILYIISGELYYFIGDRTYQVVSGVLLLINMNEVHRLINSNGAEYERVTLLFKKEALQSLLPEAEDLDLFNYFRSDSNAVKLRGHEQNFVEDLFDKIIREDTSNSTNKSASSELYVRLMLMELLIFIQRKFVNGHNDYFIESNRTYRQISQIIHHIHENYNQRLTLEDISKKFYLSLSHLSRTFKESTGFTFIEYVNNVRVKEACTLLKSSKLTVSEIAELVGFESQTHFGRIFKSIVGVPPLKYRKMNYS
>CP034346.1|AZS18334.1|3700179_3705390_-|licheninase
MAGIVSADGPPVDHAQGVAPGYIVDNTGELIGEVTAVPILDSVPNATDAVYVAQSLGQEVIAQWVFQNEGDNGTFVATGGKYQSASILTHVGGVFENYSGSKQEISYQGWDQGNGKKYWLLTLSTAGFENIAVSSEQNSSGSGPNDFKLQMSTDQATWTDVENGIIQMNTSSSYNCPNDTCKLKDLPLAGADDKELLYIRWIVNSNLPTNTVDNPSGIGGGGSSRIRNIYVTGDPIAGKTPVIPTIDLSHLPKHGEESVAADAPLTVKFNKNISIRSESSVSIIDGNGIRIEATAAVGGNTLHINHPEFTYGATYTVSIPRQVIIAEDGVPLVRDISWSFTTQDSPLIPKLINMTFNTDPRTGIAFAWYTDIMTDTKVQVVEASRMTGGVFPEQEAMEFTGTGEEIETFMSKADRSTGHKAKFISHKAAANHLKPGTKYRFRVGNGQEWSGIGSFTTDTEQHQPYRFIVGSDSQASSKEDFEPWADTFKKARDLIGDPKFLINAGDLVDNGDLEEQWQWMLGVAQDELLNVPFVPVLGGHEIQDYDGDETTPNNNFYNHFNLPRKVVAATHDGSVYAFEYGDALYMVYNSQFDGKLNDDGSVNWDDDQHEQFWNQVDWMRNTVAKSDKKWKFVTFHKSPYAAGDNSAQWEGERIEFYKKNLIPVFDELGIDMVFEAHDHMYMRSFQMYGDQIIDPTSLDKDGEGNVINPQGTVYLMSNAFGNKFYYKNYQYELDENWEPQLIYDENGDPIWYDDYFAAVDEQPEKKMFTDVSISDQVMKFTAYTAAVEDEGKAEAVGNGLIDYDHYGIKRTDSKPNQVEAAKVTLKGNNAVLTWTAPKNSKEPVRGFRIYEKNDKIKTYWSKYITIKEGQTDYSYTVEGINPGKNYDFIIKSVGRRDNSAPVEVSTLGGPVEQEPPSAPSSLEGTGASAFQINLTWNASPGTVSPLGYHIYRDGSLAGTTEATSYNDIGLKADTSYRYIVKAFNAEGIESLASNEIVVKTKQASEGEGPHKAFPQHTSYVQGSIKPNHVTQGQMDQTVERLYDEWKAKYLKKHPYLQKSDPAQYYVWYADGDWFEEEYDEELGVNYMATTVSEAHGYGMLITALMGGHDPDAKKYFDGLFRYFKAHPSEINPNLMAWKQGDTGTAIVDVDGVDSATDGDMDIAYALLLADSQWGSSGEINYLVEAKKVINAIMDYEVNQTDWMLRIADWATSGKWAAATRPSDFMLQHMKDYRNVTGDSKWDRVVDTTYGMINELYSGYSPDAGLLPDFVLKSDGKFVPAEPNFLESEYDGDYSYNSSRTPWRIGTDYLVTGDARAKDQLNTLNRWIRGVTNGDPDQILAGYKLDGSQALEEYGDITFSAPLMVSAMIDSSNQEWLNKLWDHNAAVRTEDDVYFGNNLRLLSMIVVSGNWWTPTIVDTEAPTEPTIERAEAVSSTVVDLKWTPSSDNLGVTGYKVYRNDQVISTTTKTEYRDTGLSAGTTYKYFVVAFDAAGNLSKMSNIRYVMTLQSSGGGPSGSTGGNNDGGTISPPKTTAPGSGTDVTPEPDKKPETPAPAKKSFSDVGKKYSWAKDAIEELAGAGIIKGTTEFTFEPGKYISRADFIVLLVRALGLEADFDANFTDVASGAYYYEALGIAKQLGIATGIGGNKFEPKAVISRQDMMVLTARALKLVGKMNEAGSAADLSKFRDSSKLTEYAVESVASLAKAGIILGDGRAIHPLESATRAEVAVMIHRIYTR
>CP034346.1|AZS15844.1|3699397_3699982_-|phospholipid-methyltransferase
MISSVGELIQEKALFFYKFLRSPGQIGSVTPSSKFLARAMVEPVSWDEVNSVAELGAGTGAITKYIRTVVKADTRVLLFEKDPVLYRELRFQYAQYGCYRDACRLQYVMNQEKIEQLDCVISGLPFFNFPQTTRDHLLDEIIASLKDGGLFIAFQYSRQMKKQLAGRFDIEEIKFVPLNVPPAFVYVCRKRGGQ
>CP034346.1|AZS18333.1|3698738_3699398_-|inositol-phosphorylceramide-synthase
MSPAFSSKFIKYRPLLWILLIPILNIFYMVLNHDGTRVNNLMTDLDAQIPFVPAFIIPYLSWYPFIIIMLIVILVNNRKTYYRTLIALCLGLIVCYIIYYFYQTTVPRPPITEQGILYSLVRFTYLTDNPFNCFPSIHVLTTYLIWRGALDCNGLSKLMRLFTSFMFVAIVLSTLFVKQHYVLDIAAAIFIAEVLYFITGKCLEVSLKSGKVINKQTNP
>CP034346.1|AZS15843.1|3697949_3698651_-|DNA-binding-response-regulator
MMSVNILVVDDDPEIRDILHIYLRNEGYHVVQAEDGKKALELLQQEQIHLIILDIMMPNLDGISACLKIRESSGVPIIMLSAKGEDLDKITGLSMGGDDYMTKPFNPLELIARIKVQLRRQNYIAVSNQAVDEGEICIDDLVINKDYYRVTVKGREISLTPIEFAILELLASHRGQVFNIDKIYQKVWKEQHAYYSQNTVMVHIRNLREKIEANPRNPQYIKTVWGVGYRIDK
>CP034346.1|AZS15842.1|3696892_3698167_-|sensor-histidine-kinase
MSSRSWNCSLAIAGKCLTSIRFIRRCGKSNTRITPKIQLWSISATFARRLKPTQEILNILKRYGEWGIVLINKIWVVVSGKKSIRTQLIWAIFLSFIVTTFVISLFPNTLTSLILFIVIFIVCFTILTRSIVRSIWQVANGLMVIASGDLNYRLPVSRQDELGIVSQNVNHMAQQLQEQVERERQLEISRMDLITSVSHDLRTPLTSIIGYLDLLKKQAFQDEQEEARYINNAFNKTQQLKKLIDDLFEYTRLSHGDVQLNLQEVDFHSLIEQMVSEFEPVAREQGITLIQELSPDPVIMSMDVEQMVRAIDNLLMNATKFSLVPGEVKISLVTGEKYVQLSVENQGQPITKEQEELLFQRFYRMEPKQNDMYMPPGYGLGLSIARNIVELHGGRIWLDHQQGDYRFCIEMKRSMYTSSEQQEE
>CP034346.1|AZS15841.1|3695729_3696557_+|SCP-like-extracellular
MTHKNLKTLFTGSMAVAVIAAGVILPQGGKAEAASASNIDCNQPTQQVQKVQQKWVQLNWNGNLDDLKSLLSQLPNLDLSNLPEIQKPTTPSEKPSNPEQKPSTGSDSSNNNNNETPTKPTTPTTPTKPTTPTTPTKPTAPSDNNNGTSGQTDNASFAQQVVNLVNQERSKAGLKPLTVQDNLTKVAAAKAADMRQNNYFDHQSPTYGSPFDMMKQFGVSYSYAGENIAKGQRTPAEVMNAWMNSEGHRQNIMSPNFTKIGVAYDNGYWVQEFIG
>CP034346.1|AZS15849.1|3709859_3710417_-|chromate-transporter
MGELWQLLLAFLQIGLFSIGGGYVIIPFIQELAVEKYAWISQQVFTDIITISQMTPGPLAVNTSTFVGLRIAGIPGAMIATFGCVISGVGISILLYRFIQRYNKSVYVFETLNVLRAVSLGLIISAATTILLLTLLGISEISMAAKVDWIAVAFFAVSLYVLRKWKMNPVLLMVLTGILGGIVIQ
>CP034346.1|AZS15850.1|3710416_3710983_-|chromate-transporter
MISQRTKLYIWLLGINLFISTFTFGGGYVVVPMIRKYFVSRKKLFSEAELVDMAAIAQSSPGAIAINLSTLVGFRLAGMAGAVISCIAAVLPSFVILIFISMFYADFSANPLVISVLRGMQAGVAALIVDFVVDMSMLLIKERSLFLTLLIPTAFLANFIFEINVAIILIASCFLCFVRVWLNERRQK
>CP034346.1|AZS18335.1|3711092_3711986_+|LysR-family-transcriptional-regulator
MTLRHFEILRTVAETGNFTRAAEKLYITQSAVSHAIRELEDKTGTALFDRLSKSVQLTRSGGLLLEEIIPILSSCEALESRINGLEHRAPLHIVSSITIAAFWLPKILTAFQKDWPDIPIHVDVVSAANAIEILRNGKADIALVEGTAPQGPFKCTPLASYPLNIVCAPDYPSTNKELTLQEFCSEKLLLREKGSAIRDTLDSVLYLSGHTVQPVWTSVNSLALIEAAKAGLGITILPDVLVSESLSQGKLISISVQELVLNNELIAVHHRDKYLTSPLRTLLSYIESTMSLGAQNA
>CP034346.1|AZS15851.1|3712138_3713110_-|iron-hydroxamate-ABC-transporter-substrate-binding-protein
MKKLFIPIALVLVLALSACGGKQANDTGNKGNQAETPATNATNGANEASGESGTFTYQSENGPVEVPKNPQRVVVITRLLTGNVMLLGVPLVGVDEMSKENPNFKDKLKDVETVSDESLEKIIELNPDLIIGESNIQNIDKLKQIAPTVTYTYGKLDYLAQELEMGKLLNKEKEAQAWVDDFQARTKKAGEEIKAKIGENATVSVIETFNKQLYVYGDNFGRGTEILYQAFGLSMTEKVKEATEKDGYLALSTEVLKDYLGDYVIFSKNSDEDNSFQNTETYKNLPAVKNNHVYEADAKAFYFNDPLSMEYQLDFFIKSFLGE
>CP034346.1|AZS15852.1|3713251_3714910_-|helix-turn-helix-domain-containing-protein
MDKVVPEWVESRFPLYAVSSIHSLYCTSNLSEHKIVDELTVLVAIAAGKGTLCIDDQAYKLEEGSIILLPAHSDAVLVAELPHPLHAYKLAIRGIKQNSGSAAVAMMRNSEIASNTAVHIYEDEPGIVADLEELYTHRLPVSEIRHVQNQIIFHQLIHRLLERQNAGLENDEQPSMERSIVYLEHHFTEKIKREQLAKAAGVSTSHFSVLFKQHTGFSPSEYLSRLRVHRAKELLINGSSTLREIALKVGYKDEFYLSRRFKQHTGISPSDFTKGGVQQVAVLLAPYASHLLLLGLAPTVTITETSEYVHTVELHPQMMNFIDIRSSAEQMKTVLISHHVELIIAATEHLREYGLNAEQLRVVAPVVEIAWMEMGWKEHFRLIARAVQRSERAEQWLAEFEQEEQLAREQIKNGSAGEEIISIFVIKPEGVFVYGARNVGYVFYRSLDLRPPALIEAEIRKHGDQFHSIPVELSELELYAGSGSRILVIVYPDEKGNTVHSERIFESSYWSSLPAVKQKRVDVLNVDDWVPYNPVSVRLQLQRAVDLLTSYQ
>CP034346.1|AZS15853.1|3714963_3715320_-|transcriptional-regulator
MTTTKSTAKKASSYIPKTPEHIECNIEKTLDVLGGKWAFLVIRELFCGTLRFGELQRKIPSVSPRALTSTLRHLEEQGVLERKVYPTVPVTVEYSLTPKGQDLHVICHEMKLWAARWT
>CP034346.1|AZS15854.1|3715484_3716423_+|aldo/keto-reductase
MKYRRLGGTGLKVSEISLGSWLTYGGYVERENAVNSIKTAYDLGINFFDTANVYERGAAEELVGKALKEYPRESYVLATKAFWPMGDGPNDRGLSRKHVIEQANASLKRLGHDYVDIFYCHRHDPETPLYETLRAIDDLVRQGKVLYVGVSEWQASQIAEALGVADQHLLDRIVVNQPIYNMFERYIEKEIIPLSERHGIGQVVFSPLAQGLLTGKYTSASDIPEDSRAAKLDWVRKGITEEKIAKVKQLEGIAAELGISVGNLALAWILRQSNVASALVGASRPEQVTENAKASGIELSEDVLNRIEEILK
>CP034346.1|AZS15855.1|3716836_3717262_-|N-acetyltransferase
MAYTFQKNRENIDWVQVTNILNGFGLTDFTPEQTRTAFENSAVNVFILDGSKVVGCGRALSDGISQAAIYNIAVEESYHHQGLGKKIISLILEETSSCNVVLYTHPNTVSWYEQQGFRRMKTGMALYHPSSIEELIRMDFI
>CP034346.1|AZS15856.1|3717276_3718035_-|amino-acid-ABC-transporter-ATP-binding-protein
MIEIRGLTKSFHGNTVLDQIDLTIQRGDVVAVIGSSGAGKSTLLRSINLLETPDAGTIKIDELRVDTARKTKKEVLELRKSTAMVFQQFNLFRQKTALENVMEGLIVVKKIAKEEARKKAESQLAKVGLTERVHHYPKQLSGGQQQRVAIARALAMQPKILLFDEPTSALDPELVGEVLDTIKQAAEEGNTMLIVSHEMNFVRKVATRVLFLDQGLIVEDGTPQEVFSHPKSERTKQFLANYYRDQEPEFAI
>CP034346.1|AZS15857.1|3718027_3718768_-|amino-acid-ABC-transporter-permease
MPNIFDVELVFTLIPKLLKYLPVTIELTAIAMLAGLLLGLLLAIIRIKKIPVLYQISVVFISFIRGTPILVQLYLSYAGIPLLLKYYNFYHDTSYNVNSIPSIFYVLLALSLNEAAYNSEIIRAALLSVDKGQIEAAHSLGMTYGQVLRRIILPEAFIVALPTLGNALIGLMKGTSLAFVCSVVEITAQSRILAGNNLRFFESYCALALIYWGMTILIERAIALLERRLDIDFKSLRKRKGEVILD

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Crispr_ID: CP034346_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034346_6

5345879-5345969

Orphan

Consensus_repeat	Method
AGTTTTGTGAGCTATGCTATTAGATTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034346_6

>merge|CP034346|6|5345879-5345969|CRISPRCasFinder
AGTTTTGTGAGCTATGCTATTAGATTTACACCGTACAAAACTTGCATCGTAAGCACTCGCTTAGTTTTGTGAGCTATGCTACTTAGATTTA

>CP034346|6|6|5345879-5345969|CRISPRCasFinder
AGTTTTGTGAGCTATGCTATTAGATTTAC	ACCGTACAAAACTTGCATCGTAAGCACTCGCTT
AGTTTTGTGAGCTATGCTACTTAGATTTA

Protein	Signature genes	Signature genes Name	Protein_function
CP034346.1\|AZS18442.1\|5336847_5337654_-\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208
CP034346.1\|AZS17134.1\|5336363_5336945_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP034346.1\|AZS17138.1\|5341540_5342590_-\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|273100
CP034346.1\|AZS17135.1\|5337820_5338378_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182749
CP034346.1\|AZS17140.1\|5346003_5346669_-\|succinate-dehydrogenase	unknown	unknown	gnl\|CDD\|239577
CP034346.1\|AZS17139.1\|5344115_5345861_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236319
CP034346.1\|AZS18445.1\|5343332_5344097_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181515
CP034346.1\|AZS17141.1\|5346945_5347848_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP034346.1\|AZS17137.1\|5340254_5341289_-\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
CP034346.1\|AZS17145.1\|5353434_5355327_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
CP034346.1\|AZS17143.1\|5349145_5349817_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
CP034346.1\|AZS18443.1\|5338788_5340084_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|366376
CP034346.1\|AZS17146.1\|5355465_5355780_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
CP034346.1\|AZS17136.1\|5338449_5338797_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
CP034346.1\|AZS17147.1\|5356124_5356280_+\|YqzM-family-protein	unknown	unknown	unknown
CP034346.1\|AZS17148.1\|5356425_5357382_-\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP034346.1\|AZS17144.1\|5351750_5353469_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP034346.1\|AZS18444.1\|5342697_5343087_-\|DUF454-domain-containing-protein	unknown	unknown	gnl\|CDD\|377291
CP034346.1\|AZS17142.1\|5347876_5349121_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|235410
CP034346.1\|AZS18446.1\|5349831_5351166_-\|Trk-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349

Protein	Function_ID	Function_description	E-value
CP034346.1\|AZS18442.1\|5336847_5337654_-\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	1.60633e-35
CP034346.1\|AZS17134.1\|5336363_5336945_-\|N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.04042e-34
CP034346.1\|AZS17138.1\|5341540_5342590_-\|selenide,-water-dikinase-SelD	gnl\|CDD\|273100	TIGR00476, selenide_water_dikinase, selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring well but not aligning to the beginning of the model is likely to have a selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyzes a tRNA base modification. It also contributes to selenium incorporation by selenium-dependent molybdenum hydroxylases (SDMH), in genomes with the marker TIGR03309. All genomes with SelD should make selenocysteine, selenouridine, SDMH, or some combination.	3.72662e-168
CP034346.1\|AZS17135.1\|5337820_5338378_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182749	PRK10809, PRK10809, 30S ribosomal protein S5 alanine N-acetyltransferase.	1.69171e-36
CP034346.1\|AZS17140.1\|5346003_5346669_-\|succinate-dehydrogenase	gnl\|CDD\|239577	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.80285e-82
CP034346.1\|AZS17139.1\|5344115_5345861_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236319	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP034346.1\|AZS18445.1\|5343332_5344097_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|181515	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	0
CP034346.1\|AZS17141.1\|5346945_5347848_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.11478e-43
CP034346.1\|AZS17137.1\|5340254_5341289_-\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	3.17317e-113
CP034346.1\|AZS17145.1\|5353434_5355327_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
CP034346.1\|AZS17143.1\|5349145_5349817_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.60903e-58
CP034346.1\|AZS18443.1\|5338788_5340084_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	9.95527e-95
CP034346.1\|AZS17146.1\|5355465_5355780_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	7.22304e-50
CP034346.1\|AZS17136.1\|5338449_5338797_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	3.56587e-36
CP034346.1\|AZS17148.1\|5356425_5357382_-\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	1.25885e-84
CP034346.1\|AZS17144.1\|5351750_5353469_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.85491e-09
CP034346.1\|AZS18444.1\|5342697_5343087_-\|DUF454-domain-containing-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	1.16028e-37
CP034346.1\|AZS17142.1\|5347876_5349121_-\|sodium:proton-antiporter	gnl\|CDD\|235410	PRK05326, PRK05326, potassium/proton antiporter.	6.38777e-69
CP034346.1\|AZS18446.1\|5349831_5351166_-\|Trk-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.05066e-102

>CP034346.1|AZS17139.1|5344115_5345861_-|succinate-dehydrogenase-flavoprotein-subunit
MSKQSIVVVGGGLAGLMATIKAAEAGVQVHLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRHRTAFAGATTGQQLLYALDEQVRRHETEGLVVKYENWEFLSVVLDDEGACRGITAQNLRSMEVATFASDAVILATGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFSVCVDQKLGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFVGDDPRKVPMKIFPAVHYSMGGMWVDYNQMTNIPGLFAAGECDYQYHGANRLGANSLVSAIFGGMVAGPKAVEYIRGLKNSVEDMNSAMLDNARKVQEDKFEKLLKMEGKENAYVLHKELGDWMTDNMTVVRHNHRLEATINKIKELKVRYKDINVNDTSRWNNTGAAFTRQLWNMLELAEAMTLGALLRNESRGAHYKPDYPERNDEEFLKTTKATWTPDGPQISYEEVDVSLIPPRIRDYSKDK
>CP034346.1|AZS18445.1|5343332_5344097_-|succinate-dehydrogenase-iron-sulfur-subunit
MAETKATIRKVKFIITRQDGPETKPYTEEFELDYRPGMNVISSLMEIQRNPVNMKGEHISPVCWESNCLEEVCGACSMVINGKPRQACAALIDNLEQPIRIEPMRTFPVVRDLIIDRSRMFNALKKVKAWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTDFIGPAPISQVRLFNAHPTGEMNAEERLEALMEAGGIEGCGNSQNCVRACPKGIPLTTSIAEMNKDTTKHMFKRWLGV
>CP034346.1|AZS18444.1|5342697_5343087_-|DUF454-domain-containing-protein
MKYLYLTLGFLFLGLGAVGVFLPVLPTTPFLLLASFFLSKGSDRFHRWFCGTKLYREHLEGFINSRSMTLRAKLGILVLATSMLTIAFILMKNWIGRGCILLLISFMYYYFIFRIKTVKRSETIASIEE
>CP034346.1|AZS17138.1|5341540_5342590_-|selenide,-water-dikinase-SelD
MEASNTVKLTTLTTKGGCGCKIGPADLMQVIRSLPPTEPNPDLLVGLDTSDDAGVYKISEDLALVQTLDFFTPIVDDPYSFGQIAAANAISDIYAMGGKPLTVMNIVAFPISTLDKSILADILRGAADKVREAGATLVGGHSIDDKEPKFGLAVTGLVHPDKVRTNAGAKAGDKLILTKPIGVGIMTTSIKKGQLTAEETERVTRVMSTLNRKAAETMEPYDVHACTDVTGFGLMGHALEMAKGSGTGIRIKQDQVPVLPRVRELAENGFIPGGTKNNFAHVEGDISFPETMDQIDRWILCDAVTSGGLLIAVAAAEADSLLDELVKAGVEASLIGEVTDQHPSRIVVE
>CP034346.1|AZS17137.1|5340254_5341289_-|tRNA-2-selenouridine(34)-synthase-MnmH
MFQDLSITEWLERKDKEMTMIDVRSPSEYADSSIPGSVNIPLFDDQERAEVGTIYTRVSVEAAKERGLEIVSAKLPRFIRQFAEIEGPKAVFCWRGGMRSKTTATLLSLMDIHVYRLAGGYRDYRKWVVSTLESMDFKPNALVIHGNTGNGKTAILRNLQAKGYPIVDLEGMAGHRGSAFGHIGLQANNQRMFDSLLLEELLRLQHSEYIMLEAESRRIGKVCVPDFILSKKDHGRHVKLELPLEVRVQNILDDYEPWKYPQDCILDFQKIRSKIHVPIAAEIAECLEQGIYARAVELLLLHYYDKRYAYSEKNYAESDFITITANTMEEAEQQLEKLLQESYH
>CP034346.1|AZS18443.1|5338788_5340084_-|beta-N-acetylhexosaminidase
MIFRYVCVPLFAVVLFVAGCGGGGGGTDSSGNNQGGNTSSETDGNLNGNQTGESNQPASPTPEPTDPVQAKLDSLSTAEKIGQLFIVGMDGTASNDNIRELLQQQHVGGVIFYKNNIENTKQALSLFNQLKEENRDNPVPLFLSVDEEGGRVSRMPAEYTKLPAAAKIGAVGDAKAAEGLGDIIGTELAGFGLNMDFAPVLDVNSNPDNPVIGDRSYSSSASTVSEMGLSEIKGLSGQGVIPVVKHFPGHGDTSVDSHLGLPVVKHDMERLRKLELVPFQAAIEADADAVMVAHLLMPNLDPDHPASFSKAVIQDLLRDELGFGGVVISDDMTMGAISEHYKIEDAAVQFILAGGNIVLIGHELEKEKAAIQAITDAVEQGTIPMDVLDDRVYKVLELKEKYKLSDDPAKGPGIKQVNKRIQQFLSEYKLK
>CP034346.1|AZS17136.1|5338449_5338797_+|MGMT-family-protein
MQPFTTQVIHIISSIPEGTVMTYGQIAKEAGSPRAARQVVRILHSMSRKYQLPWHRVVNSRGEIALQDDEGASLQRMLLEAEGVYIGLGGGIDLQQYLHQPTPSSAQNSPEQELL
>CP034346.1|AZS17135.1|5337820_5338378_-|GNAT-family-N-acetyltransferase
MKSILYTDRLILRMLDDQDSVTVVQYLQDNRVSLAEWEPLRSEDYYSELYQKEQLRQSIMMSYRGEMCKWWIARKDEPERIIGSISLSNIARGAFQSCHLGYGLDGRERNKGFMTEALQGVIEYAFGELGLHRIEANIMPRNGASLKVVEKLGFYHEGMAYKYLKINGVWEDHIHMVLRNEAMEK
>CP034346.1|AZS18442.1|5336847_5337654_-|DUF1361-domain-containing-protein
MKLVIYIMLFIATIIGMKYVAETRLPSGGRPPYLFLIWNTFLAWIPLGLAVMLDLVSLLHSRSVRRGLYLIVGLLWLFFYPNAAYLITDLLHPFVRYPTQSSRFWEDISFWNHLNTVFFTAIIGLALGSLALASVHQLVRRAYGSFVGWCFAIGVLLLSSFGVYLGRFIRWNSWDILRSPIIVLRETAKYFMQIDNLRHALGFCKWIFLITAFCYLLLYLFGRLGSSMASIERERERGHEAAAKHAAAAENEISRIGERTATAAKNRV
>CP034346.1|AZS17134.1|5336363_5336945_-|N-acetyltransferase
MDMKQQLSMQQQLRMKFPVLENERLRLRRIESEDSELLFQYVTDPRIERHMSFQPDTLLFPKRLFRYFEETYRSLNDLHFAVIWKETGEVIGICSLQQWSELNGKARLGYLISPSFWNLGIATEAAGLLLRFGAEVLGLNEVEARCGVDNPASERVLKKLGLSLQAYADNSVGYRSNEYCRLKVYSLHIKKAL
>CP034346.1|AZS17140.1|5346003_5346669_-|succinate-dehydrogenase
MKGFYSRKLHSLLGIIPLGFFLLEHMLTNFSAVEGGSQGFKDSVAFLNSLPLILVLEVVGIYLPLLYHGVYGIYIAFQAKPNNGNYATERNLRYLLQRITGIIVFIFVIWHVYETRIQVALGNVTHDQLGGVMHDIMMQPIFFIIYLIAVVSASFHFANGLWSFLVSWGITVGPRSQRVSSYICMSMFVIVSIMFVWSLFAFRSVEFAGSTALLQSFRMLG
>CP034346.1|AZS17141.1|5346945_5347848_+|LysR-family-transcriptional-regulator
MLEELIVFTTVVEQSSLNKASKLLNLSQPALSRKIVKLEEEWGVALFNRNGKKLELTRVGHEAYLYALEQRQRHQNFLQSVSRFKAANRSTITLGASLTTLQTTLPPLVTALMNNYPDMEVKLLTGKTHEIVSYVREKKVDIGVIASSISESGLKCIPLFQDHLELVVPRGHELADGGPVAMGDLNDRSMIIFSKGTWYRKLIDEVFVRYGIIPDVRMEIDSFEAIVRLLPTCKSATLLPKSYLRKQLLKDNDLVTLPMKELEQTRRETCLIYGSKTNLSSEIKEWVNDIRSHLIQVLTI
>CP034346.1|AZS17142.1|5347876_5349121_-|sodium:proton-antiporter
MESAATEAIRHLLILILFVITVGMISGKIASILKLPDVAVYIATGMLLGPGLGWIHEASGSLINQIILTVGSVLILFDGGRNLRLSGLKEIWISLSLLSVLGVLITMVVVGIGVHYLFGVSWVFSFLAGAVIASTDPASIIPVFRQVNIKKRVRETVESESAFNDATGSILTFSFLAAVASGGELNIGMMGWDFVKTAFGGIAVGLIIAGCLSYFTGHIKRGILSEYTTLVMIVCALASYLIADLLGFSGFMATFVAGVIWGNADIFNLNMEEKRSEIGAVSDNITLMMRMLIFILLGSQVNFTTLGHYFWQSLAAVLILMFVARPITVLICAWPDRKAKWTWQELLFMCWVRETGVIPAALSGMIVGMGVANAQIISAIAFMAIMLTIIVQASTTGWVARKLGLEVSKEAARP
>CP034346.1|AZS17143.1|5349145_5349817_-|TrkA-family-potassium-uptake-protein
MKTQQFVVIGLGRFGSSLALELMDLGYEVLGIDRDEEIVNEWSDKLTHTVVADATDEEVLKSLGVRNFDCGIVAIGNDIQMSILAAILLKDLGLPMVVAKAISVLHGRALEKLGVDRVISPERDMGIRVAHQLVTPNLLDYIQLSKNYSIVEMNVPECLNGKNVGELHPRARFGCTIVAIHRENGVIVAPTAMDQLKTGDIMVIIGSNENVEEFEMMVNENIS
>CP034346.1|AZS18446.1|5349831_5351166_-|Trk-family-potassium-uptake-protein
MWVKWFRFSPPQILVLGFAAIILVGALLLMLPISSTTGESLPFVDALFTATSATCVTGLIVVDTGTYYSTFGQVVIMLLIQTGGLGFMTVATLFSLVFKRRISLKDRLLLQEAMNQNTMEGIVRLIRKVLIYSLVIESSAALIYTIRWSFDMPFGRALYFGIFHGVSMFNNAGFDLFGHYQSLTRYVGDPIVNLVTMFLIVSGGLGFIVLSDLVDFRKHRKLSLHSKVVLTMTASLILVGALVIYVFEFTNPGTFSSLSWGEKIWASFFQSVSPRTAGANTVDLGSLRQATQFFMVILMFIGASPSSTGGGIKTTTFMILIGAVISMIRGRSDLVLFRYRLTQDRIFKAVTLTMLSLFLVIAVSMVLSTTESASFLSILFETTSAFGTVGLTVGLTGKLTVIGKFIISFTMFAGRLGPLTMAYALGPKKGKELYRHPEGKIIIG
>CP034346.1|AZS17144.1|5351750_5353469_+|CPBP-family-intramembrane-metalloprotease
MQTSKNSPGILLKPKALWILAAIGLVLFIVLQLWLPSVNEPEQQLSKTISKDQARQAAASFAQTELGINGNFQNAHVTYDTKPELFGYLTKENLVGKYSKSYGKQFPYDVFHVTFTDPDDILSLLSIDINMQEGNVVAFEKVISTSNATKQTLLDYGRENTLSLVAREGDISLTDKEQLVRPYLKTLGVSEADLKLATTEGQYGLLYELPNYEIGQSQAQIQFHFEYGAVASMETKFTVPSSYNDYLSGQKTLAYILTFAGYGLLTFVLAILAIVYSIVTRAYTSFKRGLLLASLYFVLSMVGAINMLPYLQKDSLSSSILILSFVIQGVVTLLLSGSIYVSLVGGDALWRQKGRILWPRAKEPGYGRHVLTAMTNGYAWALILLGVQSVIFLALENTIHTWSTTDASQSTYNMLLPLLFPLLAWVAGIGEEAVYRLFGIAMLKKMFRSTFVASLITSLIWAFGHTLYPIYPVISRPIELMFIGLLFSFVFLRYGFITAVFSHVIFDTILMSISLMVMGGGLNIAAGLFYLVLPAIVGYLIYRFNPAYKERPISPTKKEEPFIPAPHPEANQ
>CP034346.1|AZS17145.1|5353434_5355327_-|excinuclease-ABC-subunit-UvrC
MQEKEQAMEAIRHKLALLPDLPGCYLMKNKNGTIIYVGKAKILKNRVRSYFTGSHDGKTQRLVSEIRDFEYIVTGSNMEALILECNLIKTHSPRYNVLLKDDKTYPYIKITNEPHPRLEVTRKILKDKAKYFGPYPNAYAAQQTKKLLDRMYPLRKCNVMPKEVCLYYHMGQCLAPCVKEVPQQTYDEMIQEIVSFLNGGHEEIKQELQRKMEEAAEELYFERAKELRDQIRSIDALMEKQKITMNDARNRDVFGFAVDKGWMCVQILYVRQGKMIERHASVFPFYGEAYGDFLSYVTQYYSDNPALPQEILLPDRKSGQQEEQTEEQVEEQVSEASDEGGELLDAESGAAALQNWLNVKTLVPKRGLKRQMTQMAVENARVALDEKFRLIERDVERTSRAAENLGVALGLTELSRIEAFDNSNIQGTNPVSAMVVFIDGKPAKKEYRKYKVRTVQGPDDVETMREVVRRRYERVLKEDLLLPDLIVMDGGKGQMAAAKDVLENELGLFIPVCGLVKDTKHKTAQLIIGDPPEPVNLARDSQEFYLLQRIQDEVHRFAISFHREQRAKSMVVSQLDAIPGVGEKRRKLLLKHFGSLKKIKEASIEDFRPLSIGDKLAQTIIDSLRDEEPE
>CP034346.1|AZS17146.1|5355465_5355780_-|thioredoxin
MAIVNVSDQSFNSEVESTGTVLVDFWAPWCGPCKMIAPILEELSGDLGDSVKIAKVNVDENPESASRFGVMSIPTLILFKDGQPVDKVVGLNSKDALKNMIAKH
>CP034346.1|AZS17147.1|5356124_5356280_+|YqzM-family-protein
MDANPHVNDPRQHINEEPRNDLFDLMNGFFGMLTLMAVIFFGMVILKFIAS
>CP034346.1|AZS17148.1|5356425_5357382_-|primosomal-protein-DnaI
MDSLGQILAGMKNNNLLRRSEQLKAELLNDPLVLELRAQHPELDEEQLIRDMAKLYQYVNDSRHCAKCPGLDQCPNDFPGHFTKLTVENNTLGPQIVARQVPCSRQLQRENELSIQKKIRSFYVDERALQEGYDEVEILTKDRVRAPAVTQVLRYISATEEGGLQPRGLYLEGNFGTGKTFLMCYLLHKLAKSGYSGVIVYMPEFVEDLKSMLQDSQKLKETVEVMKQADLLIFDDIGAENLNPWVRDHVMGSILNYRMNRKPTFYTSNYSLEALEQHLSFTSKDGEERYKGQRLMDRIAPFVDVVTVTGSNKRGKRS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034346_4	4.1\|2637423\|26\|CP034346\|CRISPRCasFinder	2637423-2637448	26	AP022646	Bacillus wiedmannii PL1 plasmid pBwiPL1-3 DNA, complete sequence	28463-28488	4	0.846
CP034346_2	2.1\|1462572\|25\|CP034346\|CRISPRCasFinder	1462572-1462596	25	NZ_CP049245	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed4, complete sequence	64165-64189	5	0.8
CP034346_2	2.1\|1462572\|25\|CP034346\|CRISPRCasFinder	1462572-1462596	25	NZ_CP015745	Shinella sp. HZN7 plasmid pShin-09, complete sequence	40802-40826	5	0.8
CP034346_5	5.1\|3709726\|25\|CP034346\|CRISPRCasFinder	3709726-3709750	25	NZ_LR134437	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 28	11171-11195	5	0.8

1. spacer 4.1|2637423|26|CP034346|CRISPRCasFinder matches to AP022646 (Bacillus wiedmannii PL1 plasmid pBwiPL1-3 DNA, complete sequence) position: , mismatch: 4, identity: 0.846

ccgcaaaagcagcgcttaataaaatt	CRISPR spacer
ccgcaaccgcagcgcttaataaattc	Protospacer
******  *************** *.

2. spacer 2.1|1462572|25|CP034346|CRISPRCasFinder matches to NZ_CP049245 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.8

acaggtttaacaagcttggaatggg	CRISPR spacer
acaggtttcacaagcttggaagccc	Protospacer
******** ************

3. spacer 2.1|1462572|25|CP034346|CRISPRCasFinder matches to NZ_CP015745 (Shinella sp. HZN7 plasmid pShin-09, complete sequence) position: , mismatch: 5, identity: 0.8

acaggtttaacaagcttggaatggg	CRISPR spacer
acaggtttcacaagcttggaagccc	Protospacer
******** ************

4. spacer 5.1|3709726|25|CP034346|CRISPRCasFinder matches to NZ_LR134437 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 28) position: , mismatch: 5, identity: 0.8

atttatttacctcaaaatgtagggc	CRISPR spacer
atttattcacctcaaaatgtaaatt	Protospacer
*******.*************.. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

992114 : 1003346

Mollivirus(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS13756.1\|992114_993416_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.2e-19	32.8
AZS13757.1\|993518_994415_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	7.9e-39	33.2
AZS13758.1\|994649_994895_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	5.3e-06	33.8
AZS13759.1\|994898_995588_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AZS13760.1\|995565_997812_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.2e-164	43.4
AZS13761.1\|997796_999269_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.3e-50	32.3
AZS13762.1\|1000020_1001064_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-70	46.7
AZS13763.1\|1001063_1001678_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.2e-24	39.8
AZS13764.1\|1001798_1003346_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	9.1e-75	51.3

DBSCAN-SWA_2

1698775 : 1723673

Brevibacillus_phage(30.43%)

tail,portal,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS14221.1\|1698775_1700104_+\|tail	phage tail sheath protein	A0A0A7RTT5	Clostridium_phage	1.7e-93	44.4
AZS14222.1\|1700117_1700585_+\|portal	phage portal protein	A0A0A7RVP1	Clostridium_phage	1.8e-42	52.0
AZS14223.1\|1700596_1701016_+\|portal	phage portal protein	X5JAB6	Clostridium_phage	1.0e-25	43.2
AZS14224.1\|1701255_1702557_+	hypothetical protein	S6AVU8	Thermus_phage	4.2e-41	33.6
AZS14225.1\|1702684_1703353_+	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	1.2e-39	45.7
AZS14226.1\|1703354_1704038_+	LysM peptidoglycan-binding domain-containing protein	S5MUH0	Brevibacillus_phage	4.0e-51	44.5
AZS14227.1\|1704053_1705007_+	hypothetical protein	S5MNC9	Brevibacillus_phage	1.5e-96	51.6
AZS14228.1\|1705006_1705348_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	8.8e-23	49.5
AZS14229.1\|1705344_1705743_+	DUF2634 domain-containing protein	A0A0K2CP95	Brevibacillus_phage	9.9e-26	48.4
AZS14230.1\|1705735_1706815_+\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	1.7e-96	48.3
AZS14231.1\|1706807_1707392_+	DUF2313 domain-containing protein	S5MA71	Brevibacillus_phage	6.7e-39	49.7
AZS14232.1\|1707388_1707676_+	ketopantoate hydroxymethyltransferase	NA	NA	NA	NA
AZS14233.1\|1707675_1710594_+	hypothetical protein	L0L861	Bacillus_phage	1.9e-17	30.9
AZS14234.1\|1710603_1710921_+\|portal	phage portal protein	NA	NA	NA	NA
AZS14235.1\|1710920_1711064_+	XkdX family protein	NA	NA	NA	NA
AZS14236.1\|1711605_1712430_+	hypothetical protein	NA	NA	NA	NA
AZS14237.1\|1712435_1712642_+	hypothetical protein	NA	NA	NA	NA
AZS14238.1\|1712643_1714107_+\|tail	phage tail sheath protein	X5JAJ1	Clostridium_phage	8.1e-25	25.7
AZS14239.1\|1714131_1714548_+\|portal	phage portal protein	A0A2H4J032	uncultured_Caudovirales_phage	2.8e-39	59.5
AZS14240.1\|1714596_1715058_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	6.5e-21	38.5
AZS14241.1\|1715257_1716913_+	hypothetical protein	NA	NA	NA	NA
AZS14242.1\|1716927_1717560_+	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	3.3e-47	52.6
AZS18173.1\|1717559_1718537_+\|portal	phage portal protein	A0A0N6W8H4	Bacillus_phage	1.0e-79	47.9
AZS14243.1\|1718526_1718904_+	hypothetical protein	A0A0N7ACD3	Bacillus_phage	1.1e-05	28.8
AZS14244.1\|1718896_1719352_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	3.9e-26	43.9
AZS14245.1\|1719351_1720470_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	4.3e-50	36.7
AZS18174.1\|1720486_1721050_+	DUF2313 domain-containing protein	A0A0A7RUW8	Clostridium_phage	4.1e-25	36.4
AZS18175.1\|1721120_1722290_+	hypothetical protein	NA	NA	NA	NA
AZS14246.1\|1722324_1722570_+	hypothetical protein	NA	NA	NA	NA
AZS14247.1\|1722587_1723253_+	hypothetical protein	S5MNY5	Brevibacillus_phage	6.1e-12	59.4
AZS14248.1\|1723268_1723673_+	hypothetical protein	S6C455	Thermus_phage	2.5e-37	63.1

DBSCAN-SWA_3

1923749 : 1932103

Bacillus_virus(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS18188.1\|1923749_1924562_+	NUDIX domain-containing protein	G3MA14	Bacillus_virus	2.5e-36	42.7
AZS14379.1\|1924777_1925338_+	cysteine hydrolase	G3MA16	Bacillus_virus	4.3e-35	44.0
AZS14380.1\|1925354_1926854_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.3e-114	48.6
AZS14381.1\|1926926_1927541_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	G3MA22	Bacillus_virus	6.8e-50	45.7
AZS14382.1\|1927559_1928378_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	7.6e-89	61.9
AZS18189.1\|1930762_1932103_+	hypothetical protein	G1FGA4	Mycobacterium_phage	5.9e-06	41.9

DBSCAN-SWA_4

2410217 : 2420132

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS14774.1\|2410217_2410652_+	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	2.0e-19	46.4
AZS14775.1\|2410737_2410959_-	small acid-soluble spore protein Tlp	NA	NA	NA	NA
AZS14776.1\|2411594_2412698_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.5e-60	39.4
AZS14777.1\|2412730_2413402_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.8e-41	46.9
AZS14778.1\|2413500_2414733_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-113	52.0
AZS14779.1\|2414792_2415260_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.1e-43	59.6
AZS14780.1\|2415339_2416152_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.2e-07	30.6
AZS14781.1\|2416120_2416765_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.2e-16	32.0
AZS14782.1\|2416895_2417603_+	DUF2953 domain-containing protein	NA	NA	NA	NA
AZS14783.1\|2417710_2418163_+	sporulation protein YtfJ	NA	NA	NA	NA
AZS14784.1\|2418962_2420132_+	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	1.8e-06	31.6

DBSCAN-SWA_5

3068717 : 3125794

Bacillus_phage(34.21%)

portal,tRNA,integrase,tail,terminase,plate

attL 3064614:3064630|attR 3119038:3119054

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3064614:3064630	attL	NA	NA	NA	NA
AZS18281.1\|3068717_3069980_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.1e-83	40.5
AZS15311.1\|3070028_3070733_+	replication protein	NA	NA	NA	NA
AZS15312.1\|3071517_3072924_+	amino acid permease	NA	NA	NA	NA
AZS15313.1\|3072989_3074864_+	tyrosine decarboxylase	NA	NA	NA	NA
AZS15314.1\|3074946_3075771_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
AZS15315.1\|3075860_3077234_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
AZS15316.1\|3077456_3078689_-\|integrase	site-specific integrase	S6C485	Thermus_phage	4.4e-72	38.8
AZS15317.1\|3078704_3079331_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	7.7e-17	33.6
AZS15318.1\|3079416_3079707_-	hypothetical protein	NA	NA	NA	NA
AZS15319.1\|3079723_3080383_-	hypothetical protein	NA	NA	NA	NA
AZS15320.1\|3080427_3080832_-	XRE family transcriptional regulator	S5MNZ4	Brevibacillus_phage	4.0e-14	40.9
AZS15321.1\|3080996_3081251_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZS18282.1\|3081431_3081746_+	DNA-binding protein	NA	NA	NA	NA
AZS15322.1\|3082035_3082344_+	XRE family transcriptional regulator	S5MNZ7	Brevibacillus_phage	9.7e-13	50.0
AZS15323.1\|3082349_3082628_+	hypothetical protein	NA	NA	NA	NA
AZS15324.1\|3082627_3082915_+	hypothetical protein	NA	NA	NA	NA
AZS18283.1\|3082936_3083191_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	8.2e-18	59.5
AZS15325.1\|3083765_3084035_+	hypothetical protein	NA	NA	NA	NA
AZS15326.1\|3084031_3084361_+	hypothetical protein	NA	NA	NA	NA
AZS15327.1\|3084361_3085396_+	hypothetical protein	A6M982	Geobacillus_virus	1.6e-14	30.5
AZS15328.1\|3085392_3086580_+	hypothetical protein	NA	NA	NA	NA
AZS15329.1\|3086579_3087053_+	hypothetical protein	NA	NA	NA	NA
AZS15330.1\|3087004_3089584_+	SMC family ATPase	G3MAB6	Bacillus_virus	1.6e-23	20.3
AZS15331.1\|3089580_3089769_+	hypothetical protein	NA	NA	NA	NA
AZS15332.1\|3089771_3089999_+	hypothetical protein	NA	NA	NA	NA
AZS15333.1\|3089995_3090277_+	hypothetical protein	NA	NA	NA	NA
AZS15334.1\|3090290_3091247_+	MarR family transcriptional regulator	S6BFM4	Thermus_phage	5.5e-22	49.5
AZS15335.1\|3091224_3091563_+	hypothetical protein	NA	NA	NA	NA
AZS15336.1\|3091462_3092956_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.3e-99	47.9
AZS15337.1\|3093133_3093325_+	hypothetical protein	NA	NA	NA	NA
AZS15338.1\|3093462_3093876_+	RusA family crossover junction endodeoxyribonuclease	S6B1L9	Thermus_phage	7.8e-42	60.9
AZS15339.1\|3093902_3094694_+	hypothetical protein	NA	NA	NA	NA
AZS15340.1\|3094767_3095004_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	6.9e-19	62.2
AZS15341.1\|3095003_3095792_+	HNH endonuclease	A0A2H4JIA5	uncultured_Caudovirales_phage	7.7e-30	33.5
AZS15342.1\|3095816_3096188_+	hypothetical protein	NA	NA	NA	NA
AZS15343.1\|3096184_3096646_+	ASCH domain-containing protein	A0A068CCC0	Rhizobium_phage	2.6e-09	32.1
AZS15344.1\|3096617_3096797_+	hypothetical protein	NA	NA	NA	NA
AZS15345.1\|3096892_3097384_+	hypothetical protein	NA	NA	NA	NA
AZS15346.1\|3097424_3097622_+	hypothetical protein	NA	NA	NA	NA
AZS15347.1\|3097877_3098600_+	hypothetical protein	NA	NA	NA	NA
AZS15348.1\|3099153_3099669_+	hypothetical protein	NA	NA	NA	NA
AZS15349.1\|3099859_3100396_+	transcriptional regulator	A0A1B1P7B5	Bacillus_phage	1.7e-49	54.0
AZS15350.1\|3100392_3101430_+	DNA cytosine methyltransferase	A0A1B1P7C6	Bacillus_phage	5.6e-121	60.3
AZS15351.1\|3101564_3101780_+	hypothetical protein	NA	NA	NA	NA
AZS15352.1\|3101780_3102416_-	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	1.7e-35	36.5
AZS15353.1\|3102513_3103392_+\|terminase	terminase	A0A1B1P7C9	Bacillus_phage	1.2e-34	44.8
AZS15354.1\|3103384_3104833_+\|terminase	terminase B	A0A1B1P7D5	Bacillus_phage	3.4e-148	58.5
AZS15355.1\|3104825_3106322_+\|portal	phage portal protein	A0A0A8WI73	Clostridium_phage	4.0e-152	51.7
AZS15356.1\|3106325_3107342_+	hypothetical protein	A0A0N7ACI5	Bacillus_phage	1.3e-74	45.0
AZS15357.1\|3107600_3108779_+	hypothetical protein	A0A0N7ACY8	Bacillus_phage	1.6e-71	43.1
AZS15358.1\|3108804_3109200_+	DUF2190 family protein	A0A0A8WJN5	Clostridium_phage	5.7e-34	60.0
AZS15359.1\|3109215_3110280_+	aspartate ammonia-lyase	A0A0N7ACJ3	Bacillus_phage	1.1e-127	63.0
AZS15360.1\|3110293_3110650_+	hypothetical protein	A0A0N7ACH0	Bacillus_phage	1.7e-24	51.6
AZS15361.1\|3110649_3111039_+	hypothetical protein	NA	NA	NA	NA
AZS15362.1\|3111040_3111547_+	hypothetical protein	NA	NA	NA	NA
AZS15363.1\|3111543_3112380_+	hypothetical protein	A0A0N7ACG6	Bacillus_phage	1.7e-67	45.3
AZS15364.1\|3112389_3112581_+	hypothetical protein	NA	NA	NA	NA
AZS15365.1\|3112581_3114039_+\|tail	phage tail sheath protein	A0A0N7AEC6	Bacillus_phage	6.3e-86	38.6
AZS15366.1\|3114055_3114475_+\|portal	phage portal protein	A0A2H4J032	uncultured_Caudovirales_phage	2.6e-40	55.6
AZS15367.1\|3114498_3114930_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	8.5e-23	42.4
AZS15368.1\|3115113_3117663_+	hypothetical protein	NA	NA	NA	NA
AZS15369.1\|3117679_3118330_+	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	1.7e-46	49.7
AZS15370.1\|3118326_3119457_+\|portal	phage portal protein	A0A0N6W8H4	Bacillus_phage	4.1e-85	45.6
3119038:3119054	attR	NA	NA	NA	NA
AZS15371.1\|3119449_3119866_+	hypothetical protein	A0A0A8WFG6	Clostridium_phage	5.3e-06	34.1
AZS15372.1\|3119852_3120317_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	1.4e-26	42.3
AZS15373.1\|3120316_3121435_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.6e-49	37.4
AZS15374.1\|3121427_3122006_+	DUF2313 domain-containing protein	A0A0A7RUW8	Clostridium_phage	1.6e-24	36.4
AZS15375.1\|3123362_3124043_+	hypothetical protein	S5MNY5	Brevibacillus_phage	1.1e-13	51.6
AZS15376.1\|3124055_3124460_+	hypothetical protein	S6C455	Thermus_phage	5.7e-37	65.3
AZS15377.1\|3124674_3124935_+	hypothetical protein	NA	NA	NA	NA
AZS15378.1\|3124936_3125794_+	glycoside hydrolase	D0R7H8	Paenibacillus_phage	6.8e-72	60.6

DBSCAN-SWA_6

3859499 : 3866168

Bacillus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS15954.1\|3859499_3860594_-	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.4e-29	32.2
AZS15955.1\|3860583_3861279_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.7e-39	37.4
AZS15956.1\|3861385_3862447_-	sensor histidine kinase	W8CYF6	Bacillus_phage	5.4e-79	46.7
AZS15957.1\|3862443_3863130_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	6.0e-79	66.5
AZS15958.1\|3863155_3864928_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-174	62.2
AZS15959.1\|3865454_3866168_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	3.8e-20	41.7

DBSCAN-SWA_7

5653698 : 5686085

uncultured_Caudovirales_phage(29.41%)

portal,capsid,protease,integrase,tail,holin,terminase,head

attL 5650928:5650949|attR 5686090:5686111

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5650928:5650949	attL	NA	NA	NA	NA
AZS18464.1\|5653698_5654118_-\|holin	holin	D0R7H7	Paenibacillus_phage	1.1e-35	58.5
AZS17380.1\|5654170_5654383_-	hypothetical protein	NA	NA	NA	NA
AZS17381.1\|5654455_5655013_-	hypothetical protein	NA	NA	NA	NA
AZS17382.1\|5655069_5657235_-	hypothetical protein	NA	NA	NA	NA
AZS17383.1\|5657248_5657782_-	hypothetical protein	NA	NA	NA	NA
AZS17384.1\|5657823_5657967_-	XkdX family protein	NA	NA	NA	NA
AZS17385.1\|5658664_5660971_-	hypothetical protein	R4JDZ8	Bacillus_phage	3.7e-24	35.7
AZS17386.1\|5660976_5661402_-	hypothetical protein	H6BJ44	Methylophilales_phage	1.9e-22	40.8
AZS17387.1\|5661413_5661956_-\|tail	phage tail protein	NA	NA	NA	NA
AZS17388.1\|5661956_5666480_-\|tail	phage tail tape measure protein	Q9G097	Lactococcus_phage	2.1e-63	38.1
AZS17389.1\|5666482_5666743_-	hypothetical protein	NA	NA	NA	NA
AZS17390.1\|5666757_5667171_-	hypothetical protein	NA	NA	NA	NA
AZS17391.1\|5667256_5667784_-	hypothetical protein	NA	NA	NA	NA
AZS17392.1\|5667946_5668324_-	hypothetical protein	NA	NA	NA	NA
AZS17393.1\|5668316_5668721_-	HK97 gp10 family phage protein	NA	NA	NA	NA
AZS17394.1\|5668720_5669035_-	hypothetical protein	NA	NA	NA	NA
AZS17395.1\|5669038_5669599_-	hypothetical protein	NA	NA	NA	NA
AZS17396.1\|5669546_5669813_-	hypothetical protein	NA	NA	NA	NA
AZS17397.1\|5669890_5671120_-\|capsid	phage major capsid protein	NA	NA	NA	NA
AZS17398.1\|5671142_5671769_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	7.5e-28	44.0
AZS17399.1\|5671722_5673036_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	2.5e-86	47.4
AZS17400.1\|5673051_5674842_-\|terminase	terminase large subunit	A6M948	Geobacillus_virus	1.7e-109	39.8
AZS17401.1\|5674822_5675305_-\|terminase	phage terminase small subunit P27 family	Q6DMU4	Streptococcus_phage	1.4e-10	31.1
AZS17402.1\|5675436_5675808_-	HNH endonuclease	Q38456	Bacillus_phage	5.0e-32	56.2
AZS17403.1\|5675964_5676513_-\|integrase	site-specific integrase	A0A1B0T6D2	Bacillus_phage	1.9e-59	63.5
AZS17404.1\|5676847_5677219_-	hypothetical protein	NA	NA	NA	NA
AZS17405.1\|5677196_5677385_-	hypothetical protein	NA	NA	NA	NA
AZS17406.1\|5677581_5677824_-	hypothetical protein	NA	NA	NA	NA
AZS17407.1\|5677820_5678765_-	DUF3102 domain-containing protein	A0A2H4J025	uncultured_Caudovirales_phage	2.4e-25	41.6
AZS17408.1\|5678761_5680324_-	hypothetical protein	A0A2H4J308	uncultured_Caudovirales_phage	9.6e-24	44.0
AZS17409.1\|5680325_5680700_-	hypothetical protein	A0A2H4J073	uncultured_Caudovirales_phage	1.2e-17	44.6
AZS17410.1\|5680705_5681065_-	hypothetical protein	NA	NA	NA	NA
AZS17411.1\|5681057_5682044_-	hypothetical protein	I1W658	Staphylococcus_phage	2.3e-23	43.4
AZS17412.1\|5682467_5682635_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZS17413.1\|5682732_5683047_-	DUF771 domain-containing protein	NA	NA	NA	NA
AZS17414.1\|5683036_5683252_-	XRE family transcriptional regulator	A0A2H4JBV7	uncultured_Caudovirales_phage	2.3e-05	46.2
AZS17415.1\|5683428_5683881_+	XRE family transcriptional regulator	R9TNF4	Paenibacillus_phage	4.3e-09	35.5
AZS17416.1\|5683957_5684854_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AZS17417.1\|5684867_5686085_+\|integrase	site-specific integrase	S6C485	Thermus_phage	4.1e-62	37.7
5686090:5686111	attR	NA	NA	NA	NA

DBSCAN-SWA_8

5774939 : 5783268

Escherichia_phage(28.57%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS17502.1\|5774939_5775812_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.1e-36	36.7
AZS17503.1\|5775808_5776831_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-78	46.5
AZS17504.1\|5776850_5777399_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.8e-41	46.2
AZS17505.1\|5777417_5778161_-\|coat	spore coat protein	G3MA50	Bacillus_virus	2.3e-52	45.8
AZS17506.1\|5778181_5779141_-	glycosyltransferase	B9UDL7	Salmonella_phage	3.4e-48	35.2
AZS17507.1\|5779143_5780061_-	SDR family oxidoreductase	A0A285PXI2	Cedratvirus	1.8e-09	24.7
AZS17508.1\|5780072_5781158_-	CDP-glucose 4,6-dehydratase	NA	NA	NA	NA
AZS17509.1\|5781147_5781951_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AZS18467.1\|5781963_5783268_-	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	5.5e-65	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034346

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection