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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031422 Microbacterium oxydans strain HG3 chromosome, complete genome 1 crisprs WYL,csa3,DEDDh,DinG,RT,cas3,Cas9_archaeal,PD-DExK 0 1 0 0

Results visualization

1. CP031422
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031422_2 3512535-3512611 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031422_2 2.1|3512560|27|CP031422|CRISPRCasFinder 3512560-3512586 27 MH744420 Streptomyces phage Kromp, complete genome 10334-10360 4 0.852
CP031422_2 2.1|3512560|27|CP031422|CRISPRCasFinder 3512560-3512586 27 NC_015170 Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence 112076-112102 6 0.778
CP031422_2 2.1|3512560|27|CP031422|CRISPRCasFinder 3512560-3512586 27 NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 221100-221126 6 0.778
CP031422_2 2.1|3512560|27|CP031422|CRISPRCasFinder 3512560-3512586 27 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 72101-72127 6 0.778
CP031422_2 2.1|3512560|27|CP031422|CRISPRCasFinder 3512560-3512586 27 NZ_CP009112 Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence 787037-787063 6 0.778

1. spacer 2.1|3512560|27|CP031422|CRISPRCasFinder matches to MH744420 (Streptomyces phage Kromp, complete genome) position: , mismatch: 4, identity: 0.852

ccctggctgagcagcgaccccgactga	CRISPR spacer
acctggctgagcaacgaccccgcctgg	Protospacer
 ************.******** ***.

2. spacer 2.1|3512560|27|CP031422|CRISPRCasFinder matches to NC_015170 (Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence) position: , mismatch: 6, identity: 0.778

ccctggctgagcagcgaccccgactga	CRISPR spacer
agctggctgagcagcgcccccgacccg	Protospacer
  ************** *******. .

3. spacer 2.1|3512560|27|CP031422|CRISPRCasFinder matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 6, identity: 0.778

ccctggctgagcagcgaccccgactga	CRISPR spacer
gcctggatgagcagcgagcccgacccg	Protospacer
 ***** ********** ******. .

4. spacer 2.1|3512560|27|CP031422|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 6, identity: 0.778

ccctggctgagcagcgaccccgactga	CRISPR spacer
gcctggctgagcatcgacgccgacgac	Protospacer
 ************ **** ***** . 

5. spacer 2.1|3512560|27|CP031422|CRISPRCasFinder matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.778

ccctggctgagcagcgaccccgactga	CRISPR spacer
gcctggctgagcatcgacgccgacgac	Protospacer
 ************ **** ***** . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage