CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034689	Achromobacter spanius strain UQ283 chromosome, complete genome	4 crisprs	DinG,DEDDh,PD-DExK,csa3,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034689_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034689_1

735129-735259

Orphan

Consensus_repeat	Method
GATGGGTTGCGCGCGTTCGTGGATTGGGTTCTTTTGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034689_1

>merge|CP034689|1|735129-735259|CRISPRCasFinder
GATGGGTTGCGCGCGTTCGTGGATTGGGTTCTTTTGGCGGCCTTGGCGCGCTTCACCCATCCTACGGGTGTCGTTTTGGGTGTGGCTGTTTGATGGGTCGCGCGCGTTCGTGGATTGGGTTCTTTTGGCGG

>CP034689|1|1|735129-735259|CRISPRCasFinder
GATGGGTTGCGCGCGTTCGTGGATTGGGTTCTTTTGGCGG	CCTTGGCGCGCTTCACCCATCCTACGGGTGTCGTTTTGGGTGTGGCTGTTT
GATGGGTCGCGCGCGTTCGTGGATTGGGTTCTTTTGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP034689.1\|AZS77548.1\|738273_739137_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
CP034689.1\|AZS77541.1\|732118_732946_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270407
CP034689.1\|AZS77543.1\|733676_734393_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP034689.1\|AZS77542.1\|732973_733675_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP034689.1\|AZS77538.1\|729061_729952_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP034689.1\|AZS77539.1\|730166_730841_+\|RraA-family-protein	unknown	unknown	gnl\|CDD\|180465
CP034689.1\|AZS77549.1\|739133_740030_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
CP034689.1\|AZS77535.1\|725937_726972_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
CP034689.1\|AZS77545.1\|735442_736276_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
CP034689.1\|AZS77537.1\|728308_729049_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
CP034689.1\|AZS77540.1\|730837_732055_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180403
CP034689.1\|AZS77553.1\|744349_744883_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
CP034689.1\|AZS77550.1\|740241_742134_-\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|214935
CP034689.1\|AZS77551.1\|742211_742814_-\|esterase	unknown	unknown	gnl\|CDD\|225692
CP034689.1\|AZS77547.1\|737542_738268_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
CP034689.1\|AZS77546.1\|736272_737451_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
CP034689.1\|AZS77552.1\|742839_744210_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
CP034689.1\|AZS77544.1\|734389_735115_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP034689.1\|AZS77536.1\|726968_728312_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|181059
CP034689.1\|AZS77554.1\|744980_745415_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443

Protein	Function_ID	Function_description	E-value
CP034689.1\|AZS77548.1\|738273_739137_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.23999e-116
CP034689.1\|AZS77541.1\|732118_732946_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.0727e-99
CP034689.1\|AZS77543.1\|733676_734393_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.3839e-74
CP034689.1\|AZS77542.1\|732973_733675_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.29778e-70
CP034689.1\|AZS77538.1\|729061_729952_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.88911e-37
CP034689.1\|AZS77539.1\|730166_730841_+\|RraA-family-protein	gnl\|CDD\|180465	PRK06201, PRK06201, hypothetical protein; Validated.	4.12177e-88
CP034689.1\|AZS77549.1\|739133_740030_-\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	3.96383e-11
CP034689.1\|AZS77535.1\|725937_726972_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	2.10191e-53
CP034689.1\|AZS77545.1\|735442_736276_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	6.03442e-155
CP034689.1\|AZS77537.1\|728308_729049_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.76209e-38
CP034689.1\|AZS77540.1\|730837_732055_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180403	PRK06107, PRK06107, aspartate transaminase.	0
CP034689.1\|AZS77553.1\|744349_744883_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.69717e-35
CP034689.1\|AZS77550.1\|740241_742134_-\|RNB-domain-containing-ribonuclease	gnl\|CDD\|214935	smart00955, RNB, This domain is the catalytic domain of ribonuclease II.	3.47216e-52
CP034689.1\|AZS77551.1\|742211_742814_-\|esterase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	7.28094e-56
CP034689.1\|AZS77547.1\|737542_738268_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	2.15884e-120
CP034689.1\|AZS77546.1\|736272_737451_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.64129e-88
CP034689.1\|AZS77552.1\|742839_744210_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP034689.1\|AZS77544.1\|734389_735115_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	9.26882e-157
CP034689.1\|AZS77536.1\|726968_728312_+\|dihydroorotase	gnl\|CDD\|181059	PRK07627, PRK07627, dihydroorotase; Provisional.	0
CP034689.1\|AZS77554.1\|744980_745415_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	4.55307e-87

>CP034689.1|AZS77544.1|734389_735115_+|amino-acid-ABC-transporter-ATP-binding-protein
MIRFSQVQKWYGDYQALADVTEEVTQGEVVVVCGPSGSGKSTLIRTVNRLEPIQKGVIEVNGQDIYGPKVHLDQLRSHIGFVFQQFNLFPHLSVLENLMLAPLQLKRAKRAEARERAMQLLERVGLSHKAEAYPAQLSGGQQQRVAIARALAMNPPVMLFDEPTSALDPEMVGEVLQVMKGLARDGMTMVCVTHEMGFAREVADRVWFMDAGRIVETGTPEAFFSRPGTVRAQKFLAEIRH
>CP034689.1|AZS77543.1|733676_734393_+|amino-acid-ABC-transporter-permease
MWDILKDNWLLLLIGQYPHGPIGGLVATLGLAAVSLTLALPCGVLLALGRISPYRIFYWPSSAVVYLVRGLPLLMFIFWAYFFVPIIIGRPVAGTTTMVVALVCYESAYLAEIIRAGIQALPPGQQEASRALGLSYMQTMRRVILPQALYNMLPSMLSQFVSTVKETSLAYVISVQELTYAANQINSVLLTKPFEVFGLLAMTYFILNFGLSSLVHLTERRIGRRRAGLGAVSKVVPT
>CP034689.1|AZS77542.1|732973_733675_+|amino-acid-ABC-transporter-permease
MHYVFDFSAIFQGEYPDWLLRGLITTLALAGLSWILAFCLGSLLAVIRLTGSPVANAVIAVYVAFHRNVPMLVHILFWYFGVPALLPQGLSDWLNSHGSEFIMSCIAIGLVMSAYICEDLRSAVRGIPPGQVEASRALGLSFLRTMRCVVLPQAFRIAIPPLLNQTLLLLKNTSLAMAIGVTELTAAGREIENYTFRTFEAYAVVTVIYLLLSFLIMGGGAILQRRYRPLGAR
>CP034689.1|AZS77541.1|732118_732946_+|transporter-substrate-binding-domain-containing-protein
MKTTIASFVAAVGLAATLAPAAHADTVQDIKARGKFICGTMGTAEPFSFQDPKTRAVVGYEVDMCQAVADSLGVPLELKLIAVEARIPELIAGRVDVVAANLGWSPDRAKQIDYSHQHFVSLQKILARESEKDVKAPADLAGKRVSAVRGSSSEQGARKNIPNVDTVTFKDPSGAFLALQQGKVSGFVASEMMLVKLQQQAAGSAVPVKILQPALFVEPWGMGVRKGDTAMLNQVNKVLDGMEASGQAAKLFDKWFGAGTQFNLKRDFRIEAIKG
>CP034689.1|AZS77540.1|730837_732055_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSAADTAFLAERARAIKPSPSMAAKTRVDQLRAEGRDIIDFTVGEPDLPTPAHIVQAGIDALNSGDIRYTASAGAKPLLEAVRAKFQRENGLDYGLDELIVGVGAKQLIFTALAATVQAGDEVIIPAPYWVSYPDMVLVNDGTPVVLACPEADGFKLTPQGLEHAITPRTKWVLLNTPSNPTGAMYSANELRALGEVLARHPHVWLMTDEIYEHLAYGDARHASPAAVVPALAGRTLTINGVSKAYAMTGWRLGYAGGPKPLIKAMATLISQSTSCVSAISQAAARVALTADQRCVSDAAAVFHARRDRIVALLNAVPGIRCPEPQGAFYVYPSVEGLLGKRTPAGRVLESDLDVVMYLLDEAGVAVLDGAAYGLSPYLRLSFATSMENIEEGCRRINSACAALR
>CP034689.1|AZS77539.1|730166_730841_+|RraA-family-protein
MANILTGARQLPASPVAPAAILEALAGIVTPHLSDNLARREGISGLHRYNGSGKLVGTALTVKTRPGDNLMIYKAMMQIQPGHVLVVDAGGDLSNAVLGEIMKRYLQLHGCAGVVVDGAIRDVAAFEADSFPCYARGHIHRGPYKDGPGEVNVPVSIGGQVVNPGDIIVGDEDGLVCFAASDAESLIAAAHAHAAKEERIMAEIALGDKTQSWMQAAFAAKGLA
>CP034689.1|AZS77538.1|729061_729952_-|LysR-family-transcriptional-regulator
MLTFKQIEALYWTVRLGTFSASAQKLHTTQSAITKRIQELEADFNVALFDRSGHRAELTARGHEVYALAEDMLGHRDRLLVRLKGQHTLTGTFRFGITEITAMTWLPALIRLLRAHYPRITLEPHIDLGADLLKRLQAGQLDMAFLHGEFAEPNLQVVALQRLEFAWMGSPDLIDASRIYTPADIARLPLLRQSRESGLNMIYDGWLRPHTPDSNIFTINSLIAMAGLTAAGFGVSCLPRDYFADMVSKKQLVIARTSTAPPQSVYSAMFRRDADVAFCESVAELAESCCEFSGGV
>CP034689.1|AZS77537.1|728308_729049_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MKLLRFVLRLALVLPLIVFGLFCVGLVYPFIRPRTRAWLNRSWSRALMAVCGLKVSFRGDPRMTGPVLLVANHVSWIDIFVLNSARPTSFVAKSEIRKWPVIGWLVAGAGTLFIERGQRHAVHAMGEAMQARFKLGDAVGLFPEGTTTEGFDLLPFHASLFEPARSAAVEIQPVALRFLRDGKRDGFAAFVGEESLVANLWRVLGATGLSVEVVFLPVLAARHPDGSLPTRLELSHQARDAILSVL
>CP034689.1|AZS77536.1|726968_728312_+|dihydroorotase
MRLHIANGRLIDPANGVDGQHDLFLADGRVMAVLAAGAAPDGFQADRVLDATGLAVLPGLVDLSARVAQPGHATGLAFAPAELRAALAGGVTRLVMPPDSDLESALDEPGKVDALTRQMEAGQPRIHPLGAMTVGLAGETLTEMGLLAQAGCLAYAQGEHGIADTRVLWGAMRYASGLGYTLWLRPQDPWLAQGAVAASGAYAERLGLEGLPPQAETVALNTIFELQRATGARVHLTRLSTAPGLALLRAARREGLAVTADVSAHNLHLTDVDIGFFDTHFRLRPPLRGQRDRDAIQAALAEGLVQALCSDHTPVDRHGKAAPFPLSTPGATALELLLPLTLKWARDHRVPLADALARVTSGPGAVLSGIGSGTSTSTSTSNPAAQAGQLGVGAPADVCVVDLDAEWLVTPTALQSRSPHTPFAGMMLPGRVRATVVGGQLVWETSV
>CP034689.1|AZS77535.1|725937_726972_+|aspartate-carbamoyltransferase
MLNPQLDRRGELIHLLTTEGLPKRHVERLLDAARAYAAADDAGSPATPMPDGHAAPCPVFLSLGDDLADRDAYAALATRLSLLPVVLDAQDVQTAQNGQHAQHAQHAPDVHVPPGAPAGTAHVGDALAETVARLQPGVLVLRHAASGAAHCAAAHAAPGLRVINAGDGSHADPLPALALIQAMLHAKQDLTNLAVTLVGDIRHSRLARSVIHAMTTLGVPEVRVVAPRTLLPEGLPQLGVRECASLHDGLQAADVIIVLPLQVERISGALLPSAREYAHLYGLTPVALAAAKPDALLLPGGALTPGVEVDGDVAAALPPVQAQLADLEDRLRLAALSVLAGDTP
>CP034689.1|AZS77545.1|735442_736276_-|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MNGSIWMIGDVQGCCSPLDRLLAHPDLVGDPRSRFWFAGDLVNRGPQSLETLRRIIDLGDRATSVLGNHDLHLLAAAAGVRKPSKSDTLDEILRAPDASDLINWLRFRPLAHFEQGHLLVHAGTLAKWDVAKTLALAGEVQDALRGPNWQKALQKMYGNEPATWKEDHKGGKRMRVIINALTRIRLCTPNGHMEFATKVTPGAWPPGLVPWFDVPNRATRDITTVFGHWSTLGLLQRPDVICLDTGCVWGGSLTALRLQDRKLVQVKCSQFQDPLSE
>CP034689.1|AZS77546.1|736272_737451_-|LPS-export-ABC-transporter-permease-LptG
MRTARRYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDKFSMMALLYMQALAIPTRLYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWVVTIPLMIGAALLSEYVTPWAEIKSGEANLMFRGKAGGDRLNSGYWFKEPTANGGMRIINIAELKGDGQVAGITLYEFKKDQTLTALSTAPTGSFAHGDLVLKDVSETRLDDDAADALADARQPKNPPASVVKLPERTVDTTLSAERLLARVLTPERMSIITLLDYVEYLRDNQLQYGRQVVALWRKLAYPFTLLVMITIAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPPWLTALGPNIGAMALALSAMSYMEYRHTITRIVQQRWPWSKSPA
>CP034689.1|AZS77547.1|737542_738268_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MATRKQGRSWFRITTGVLMALLCAVLLYQFWLFAQVVWFNYRDPGSSAIMREERSRLREGNPAFQLKYDWVPYDKISRNLKRAVVASEDSRFTEHDGVEWDAIRKAWEYNQRQEEAGRSKMRGGSTITQQLAKNLFLSSSRSYIRKGQELVLTYMIEHVMTKERILELYLNVAEWGVGVFGAQAAAQHYFNTSAANLSASQSARLAAMLPNPRFYDTRRNSNYLNSRVGVLTRRMRMVDIP
>CP034689.1|AZS77548.1|738273_739137_-|shikimate-dehydrogenase
MTEASPLARYAVIGNPIAHSRSPQIHTLFSQQTGKPLSYERLLAPVDGFADAVAAFVAEGGQGLNVTVPFKLDAYALAAGHLSTRARLAGAVNTLSWRDGAWHGCNTDGVGLVSDLLRLGVRLPDAAVLLVGAGGAARGVLQPLAQAGCARIHIVNRTASKALELADAWRASGVSPQTQVTAGGLSDAARPGGWNVVINATASGLQDAAPDLPPGLYADGAAAYDMMYGARPTAFMQQAETDGAALTADGLGMLVGQAAESFFIWHGVRPDPAPVLAALREALVAGR
>CP034689.1|AZS77549.1|739133_740030_-|TonB-family-protein
MQRPDSPSPLGRYLRWLGAPAQHYLRIGIAISLLVHAGALAWRFGAPALTRPPVTSLEVVLLNARSETPPEAPRAQAQNQMSGGGNAEHGMTTTPLPQTGESAETIVLEAMRRRQVQLEAEQTRLMTQLRSTDKAGAERQAVNPWPDGADLGQDAEDQASVIQNAQVAALAERVQQYSNEPRKQFVAPSAEASRYAAYLDAWRARIEAIGTQHYPDEARGRIYGSLRITVSVRADGSIADVEIDQPSPHAVLNQAARRIVQLAAPFPPFPPDIARDTDVLVITRTWHFVNDTLETQAP
>CP034689.1|AZS77550.1|740241_742134_-|RNB-domain-containing-ribonuclease
MYVFYEDDGSFKAGNILSETDASLQVESESGKRSKIKRANTLFNFASPEPAALMSQAAAAADELDLQFLWECAPQEEFDTPSLATDYFGHAPTPVEHAALLMRLHSAPAYFHRRGKGRYRPAPPDILAAALAALEKKQRQAEQQQEWVDEMAAGRLPEPIAQVAETLLIRPDKNSQQWKALDAACAKLGKSPDRLLLELGAWPHALALHKRRFLAVNFPRGLEFPELELPPIDRELPLSDAEIYSVDDVTTTEIDDALSVTTLPDGRLRVGVHVAAPGLSVTRDSEFDKLARARLSTVYMPGDKIPMQPDNVIKAFSLDAGREVPVLSLYVVADPETGEVIESETRLERVVVRENLRHNMLDAQVTEASLADPSADIPYGHWLRPLWKLAQALSAQRENVRGKPENNSRVEYSFYLDGNPDDPDTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLHQHGVPGIYRSQQAGRVRMSTQALPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDADLFAIIGAFDAQYAAWAEFQSAMERYWCLRWLKQHGVTRTVAHVLRDDLVRFANAPLVTRVGGMPELERGTAVEIDILGMDELGLELDCRYVGELSPAT
>CP034689.1|AZS77551.1|742211_742814_-|esterase
MILYLHGFRSSPSSTKARQMADAMAQRGLAALWACPQLPASPRQAIALCMDIAQRQLQGADSPRALTVIGSSLGGFYATWLAEQLGCKAVLLNPAVEAARDLATQVGEHHMYHSNAPFVFLPEYVDELAAIHVPRITQPDRYFLLAATGDEVLDWREMRDRYLGCQQRIVEGSDHGLSDFERWMPEVLEFALGGKQVRPQ
>CP034689.1|AZS77552.1|742839_744210_-|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHLHILGICGTFMGGLALIARAAGHKVTGCDAGVYPPMSTQLSEQGIELIEGFGAEQMALAPDLYVIGNVVSRGNPLMEAILESGARYVSGPQWLGDNILPGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFLIGGVAADLKVSARYDPARRPFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPGSGRIVRPAHCDALDRVIARGCWSETVTFGPDGAWQASPPDDDGAFTVLRNGVEAGTVRWSLSGEHNRMNALAALAAAEHAGVSAADGIAALTRFAGVKRRMELRGTVNGVKVYDDFAHHPTAIATTLEGLRRQVGSARILAVLEPRSNTMKLGTMAARLPDALTDADLVFCFGAHSGKHALGWNPADVLAPLGDRASSYDDIDALVAAVTAAARPGDQVLVMSNGGFGGVHGKLLDALRARG
>CP034689.1|AZS77553.1|744349_744883_+|TlpA-family-protein-disulfide-reductase
MNRRLLLSAGVAVAATVAGAYTLLGQKPRTSSAPADASDPVAGLMQLQLPDLNGATQSLANWKGQPMVVNFWATWCAPCVREMPELDALQKKYPHVRFVGIGVDSAANMQKFVEKVQVSYPLWVIGVGAIDTLRKLGNPSGGLPFTIVFNADGAINRKILGEIQPDDLNKTLSGLKA
>CP034689.1|AZS77554.1|744980_745415_+|type-II-3-dehydroquinate-dehydratase
MAQNILVLHGPNLNLLGTREPHIYGSLTLPQINERLELLGGELGAKLTTWQGNHEGALVDRIQAARQDGTDFIIINAAAYTHTSVAIRDALAGVAIPFIEVHLSNLYKREPFRHHSYLSDLAIGLITGLGADGYEAALRYAVRH

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Crispr_ID: CP034689_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034689_2

779138-779270

Orphan

Consensus_repeat	Method
GTCGAGCCCCGTAGGATGGGTAAAGCGCGAAATCACAGGCAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034689_2

>merge|CP034689|2|779138-779270|CRISPRCasFinder
GTCGAGCCCCGTAGGATGGGTAAAGCGCGAAATCACAGGCAGCAGATCACGACCGCCAAGCGCGCGGAACCCATCACAGCCCGACGGCAGTCGAGCCCCGTAGGATGGGTGAAGCGCGAAATCACAGGCAGCA

>CP034689|2|2|779138-779270|CRISPRCasFinder
GTCGAGCCCCGTAGGATGGGTAAAGCGCGAAATCACAGGCAGCA	GATCACGACCGCCAAGCGCGCGGAACCCATCACAGCCCGACGGCA
GTCGAGCCCCGTAGGATGGGTGAAGCGCGAAATCACAGGCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP034689.1\|AZS77588.1\|785861_786743_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
CP034689.1\|AZS77585.1\|782294_783389_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|270400
CP034689.1\|AZS77582.1\|779329_780007_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|334855
CP034689.1\|AZS77573.1\|768325_769225_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
CP034689.1\|AZS77580.1\|776978_777791_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
CP034689.1\|AZS77579.1\|776138_776975_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP034689.1\|AZS77574.1\|769414_769921_+\|hypothetical-protein	unknown	unknown	unknown
CP034689.1\|AZS77577.1\|772939_775381_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
CP034689.1\|AZS77589.1\|786735_787524_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
CP034689.1\|AZS77591.1\|788607_789036_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP034689.1\|AZS77584.1\|780649_782014_+\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
CP034689.1\|AZS77575.1\|770026_771226_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
CP034689.1\|AZS77581.1\|777790_778807_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
CP034689.1\|AZS77576.1\|771413_772820_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
CP034689.1\|AZS77587.1\|784976_785858_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
CP034689.1\|AZS77586.1\|783649_784804_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380571
CP034689.1\|AZS77583.1\|780039_780591_-\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
CP034689.1\|AZS77590.1\|787579_788290_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
CP034689.1\|AZS77578.1\|775436_776129_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
CP034689.1\|AZS82465.1\|767342_768185_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378924

Protein	Function_ID	Function_description	E-value
CP034689.1\|AZS77588.1\|785861_786743_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.08151e-69
CP034689.1\|AZS77585.1\|782294_783389_+\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|270400	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold. This subgroup includes TRAP transporters that bind to ketoacids such as pyruvate and alpha-ketobutyrate, xylulose, and other unknown ligands. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.38763e-141
CP034689.1\|AZS77582.1\|779329_780007_-\|alpha/beta-hydrolase	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	1.37914e-51
CP034689.1\|AZS77573.1\|768325_769225_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.3794e-55
CP034689.1\|AZS77580.1\|776978_777791_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.94032e-121
CP034689.1\|AZS77579.1\|776138_776975_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	7.30339e-56
CP034689.1\|AZS77577.1\|772939_775381_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	6.39782e-72
CP034689.1\|AZS77589.1\|786735_787524_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	4.70918e-129
CP034689.1\|AZS77591.1\|788607_789036_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.35461e-99
CP034689.1\|AZS77584.1\|780649_782014_+\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	1.04179e-175
CP034689.1\|AZS77575.1\|770026_771226_+\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.32762e-49
CP034689.1\|AZS77581.1\|777790_778807_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	7.62087e-32
CP034689.1\|AZS77576.1\|771413_772820_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
CP034689.1\|AZS77587.1\|784976_785858_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	1.06141e-72
CP034689.1\|AZS77586.1\|783649_784804_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380571	cd06348, PBP1_ABC_HAAT-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	1.09005e-148
CP034689.1\|AZS77583.1\|780039_780591_-\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	2.84098e-65
CP034689.1\|AZS77590.1\|787579_788290_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	2.67811e-115
CP034689.1\|AZS77578.1\|775436_776129_-\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	7.9388e-41
CP034689.1\|AZS82465.1\|767342_768185_-\|alpha/beta-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	1.23666e-08

>CP034689.1|AZS77581.1|777790_778807_-|ABC-transporter-substrate-binding-protein
MKFLPLPRLAGAALLALIAPLFAPPGAQAQALNPPVKVRYEEVVRSILYVPKYVALSQGYFKDAGLDVSMKTSQGTDKGMTALLSGSADIVLIGPEASIYVQNSESPVKPKIFAGLTATDGFFLLARKPIEKFDWSMLKGKEVIGFRPGSNPIVFLETALRKHGVDPKKDVKLLNNIGIPARAGAWMAGQGEYGIFLEPEAGELVRNGKGYIVASVGHEVGQVDYTVFTATDKYIRDNPKVIQAWTNVVARAEKYVKDTPAATLAPQIMTYFPGMDQGAVTEAIERYKQYQIWKTTPLVTAEAMNRLQDMLIASAVMKDTARVKYEDVVVADFANKVQ
>CP034689.1|AZS77580.1|776978_777791_-|ABC-transporter-ATP-binding-protein
MGAAVHNLKPATATAKIELRDVCLSYFTAEGETEALSNVSFSLAPGEFVSLIGQSGCGKSTLLSLIAGLIPPTSGAVMIDGQGVTKPNPRIGYMLQQDYLFEWRTILDNVMLGAEIQGRRDARSEARAVHLLEKCGLGAFLSHTPRQLSGGMRQRAALARTLVTEPDVILLDEPFSALDSQTRLAISDEVVDILRREGKTVVLVTHDIGEAIAMTDRVIVLSRRPGRLKSQYRIHYGDGARPTPFQARSRPEFNVYFKQLWDELDVHVEG
>CP034689.1|AZS77579.1|776138_776975_-|ABC-transporter-permease
MNAPIANTVPLRAVPAPSAKYLDYLRRDRAKKRNIRLTQALLMVVFLCAWEILPRMHILNPLLTSYPSALWPTFLDLWTNGQLAKHIMTTLSATLVGFTLSMAIGIVVAAALWWSDFLYKVLDPFLVVANAMPKIAFVPIFYLWLGSDYAVYGMAVAIAVFVTIMVVYAGFRGIDLNKVKLAHTFGASRWQVLTKVVLPGSVPTLIAAVKMNIGLALVGVIVGEFQSADSGLGFLIMNGSQVFKLNIVMTAITMLALISSVMYMIIYRIEAAVARRYG
>CP034689.1|AZS77578.1|775436_776129_-|cysteine-hydrolase
MEFPQWVQDRVMARQGCLHPYDELPAGRTAVVVIDMQQYFTLPGYQGECAPAREIIAPVNRLCDAVRAAGGTVVWVQTASDNADAFWSHHHGVMLTPERSKRRLETLRSDSPGFQLHPDLHAADTDLRVVKRFYSAMAPGSSELEPLLRGLGVDTLLIAGTVTNVCCESTARDAMMRDFRTIMVDDALAAVTPAEHEHSLQGWMLFFGDVLSVDEVTARLAPAQAMRKTA
>CP034689.1|AZS77577.1|772939_775381_+|GNAT-family-N-acetyltransferase
MLRHALAPMFEPSSLVIVADRPLPAAGSLSPALKAKTTVVDCEPGAAPELPVALEGLAAGARPDLALVCVSPAVLPETLRRLSALAPRSVILLPHQLPDPYPRGTWALCRAWAEENRCELLGPRSFGAQRPHAGLNFSQHPVLARAGRVALVAQSRSIMAAVMDWAEDVHIGFSTAVSLGDEAVVGLSKVLDYLASDPRTDSIVLYLEDVGPAREFMSALRAAASVKPVIVLKAGRSDADGADAIFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPKGRRVALISNGNGPPQLAMDLIGPDAAVLRADLAPTTRRALESMLEPDAACQNPVITYTPLTPERIRAILETVLDDIGVDGVLVLLAPDALADMPAVARELAQIAPTAKKPVVSCFMGDAGMRPLRRMLDDAGTPAFRTPESAADAFGVLASHHYNQQLLLQTQPQEPPSHVPDLTAARELIARVRADCRRELNTSEIRTLLGLFYVPLSDMPVDVASAEPESRPMAIRVQRDPQFGPVIRFGAGGPDAVLSVSDRGMDLPPLNGFLARQLIERSRLWRRVLAPRVGHMAAEALQQAVVLVSELVSELPDIESLDIDPLYAGETHLRAGGLRMTLTETPGCETPQTSGYPHMAIHPYPTRLVHVRRFNDGIPWVLRPIRPEDGGALQEFIRGLSERSRYMRFVSMMRELTPRMVSRYTQVDYHRELALVAATQVPNPANRGHPREVIVGFAHYLRNPDGRGAEYALVIGDDWQRRGLGRQLMAALIDAAREQGLEYIDGLVLSTNRPMLALMTSLGFTNDADPEDPTMRRVWLDLA
>CP034689.1|AZS77576.1|771413_772820_-|glutamate--tRNA-ligase
MTSNATSPIRTRFAPSPTGFLHLGGARTALFSWAFARHHQGTFVLRIEDTDVERSTPEAVQAILDSMEWLGMQPDEGPFYQMQRMDRYREVVAQMLAAGTAYHCYSSPEEVEAMREAARARGDKPRYDGTWRPEPGKTLPAVPEGRKPVVRFKNPQEGATSWNDMVKGTISFDNTELDDLIIARPDGTPTYNFCVVVDDWDMGITHVLRGDDHVNNTPRQINILRALGATLPEYGHVPMILGPDGEKLSKRHGAVNVMEYDNEGYLPEAMINYLARLGWSHGDDELFSREQLVSWFDTKHLSKSASQWDPKKLNWVNAHYIKQMDNAELAERVAPRVANRGGHPEKIDLPGVMGLLKDRAETLEQLADGAMLFCAPFTPAAPELVEQHLTPAAREALADFALRAKDIDWTREALSALIKAVLADRGLKMPQLAIPLRVAVTGQTQTPAVDAVLALLGKETVLGRLGGI
>CP034689.1|AZS77575.1|770026_771226_+|MFS-transporter
MPAMSSEARAIALLALAAFVSASAFRICDPMLPQLAAEFGTSTGQAARVVTAFAVAYGVLQMFFGPVGDRYGKYRVVSVATVACALGSAGAVLAPSLDMLVLCRAVSGAAGAGIVPLSMAWIGDNVPYERRQATLARFLTGTILGMSAGQLAGGLFADTVGWRWAFAALVVGYLVVGVLLHLEVRRQRAAGFAQVDPNAVRQGFVGQARLVLGTPWARIVLATVFIEGLLVFGALAFAPSYLHERFDISLTAAGALVAVYAVGGLIYTVVAGRILKRLGERGLAVAGGLVLGVAFLSYLLGPVWMWSLLASVLAGFGYYLLHATLQTNATQMVPSARGTAVAWFASCLFMGQAAGVALAGAVVDEIGAAALFGGSAILLPLLGAFFARALKARPKPSTP
>CP034689.1|AZS77574.1|769414_769921_+|hypothetical-protein
MSSVYLRSASIVCAVLVLAGCAARKPAAITEGQPEAPPKPVACVPAKTGDPMIGTWLSNTRPRDVSGELQSLIVLSADGTMAYESLLKIGRKARPALRETGCWTVADNVYTMQTTKSAGEPVDAKDPIYVSRYRVEKVERAKLTLRELKSGGQLVTARRMPQGYRLPY
>CP034689.1|AZS77573.1|768325_769225_+|LysR-family-transcriptional-regulator
MPAAPDLSITHYRHFLLVAELRSFRAAAARAFRSQPALSLSIREMEQRLGQPLFELGNRNTLTRFGQDCLPLARELVEHHDRVAGTLSGLANNGAGTLTMASVATVATHWLPELVAAYRERFPAVALRLFDDNSEGVERMVLAGEVELGVCSPVLGDRRLTFEPLLRDAFGLVCHRAHPLATRKSVTWRAIADLPLVGTVAHRQLADYPQAAFMLDRQVFVSNMMSLLAMLERGVGVTVLARLGVPPDSPGLAFVPLTRPCIERELGITKLAGRSLSPAAARMEEMLRAKAAASRRGVA
>CP034689.1|AZS82465.1|767342_768185_-|alpha/beta-hydrolase
MPAPRAQAAPPPRDPLDFSLVDRLPSRPAGRGRLVIGAPSIGHPPGLLFVPGAYHGAWCYAHYLEFFAAAGLGCAALDVRGHGALAQDAAFARVAIADLGQDVVSALDALTGPTVVVGHSMGALPALWAARARPVAGVVLLAPSPPGDLPGAQALPAVPKDAARPPPAETEIRARFLATTPDRDVSAVSQRLSAESPQVLNDRYLLRVAIGDAPIAAPGLCLEAGLDTHDRHPPGQDAAIARRYGFTHAVLAGQPHCMMYADQWQVSASAILRWYREHIG
>CP034689.1|AZS77582.1|779329_780007_-|alpha/beta-hydrolase
MNAPTDLLDCIEIETAPNPTHAVIWLHGLGADGNDFAPIVPELDLPAGLGVRFVFPNAPVQRVTINNGMAMRSWYDILVMDLVRVEDAKGIRASEAAVHKLIARENARGIPTSNIVLAGFSQGSAMTLHTGLRLPEKLAGMMALSGYLPLVDTAEAERNAANNATPIFMAHGQYDPVVSLARAEASLAELKRLGYDVRWHTYPMPHSVCAEEVRDISAFLNDVLR
>CP034689.1|AZS77583.1|780039_780591_-|ribosome-associated-protein
MNSHTEEESVDDGYDENGYDRPSKSQVKREMHALLDLGKQLIELSPDRLKQLPLAERLYEAIRTAQRTTGREGRRRQVHFVGKLMRDAPADEIRAQLDVWENGSREETAAMHRLEGLRDRLLDDDDALTTLLAKNPQADAQQLRTLIRAARKEKLGNASLLQGQEPQKKHYRALFQALKTLTL
>CP034689.1|AZS77584.1|780649_782014_+|metalloprotease-PmbA
MVKSSSSLPLAANHARFSELVEQTLAYARQIGASDAAAEVSESLGLSVTVRKNDIETVEQTRDRSLDLTVYAGQSRGSASTSDFSEAALRQTVEAAWHIARHTAADPAAGLPDADQLATEFPNLDLHHAWTVSTEEAAELALRAERAARDVDSRITNTDGATVGTYEGQFVMGNSRGFLGGYPYSRHSLSVAPIAGRGNGMQRDYWYTSERDPAKLASPESIGRYAAERTLSRLSARRIRTGKFPVLFEAPLALGLVGALTQAVNGGALYRKASFLLDALGKPIFPKHINLTEDPHIPGAMGSSPFDDEGVRTRRRNVVSAGVLEGYFLSSYTARKLGMATTGNAGGSHNLVFSSTQTKRGDDFEAMLKKMGTGFLVTELIGQGVNYVTGDYSRGAFGYWVENGKIQHAVQEITIAGNLADMFQQIVAVGADTISRGTKTTGSILIEQMAIAGT
>CP034689.1|AZS77585.1|782294_783389_+|twin-arginine-translocation-signal-domain-containing-protein
MQRRSFLKHAGLGAVATGAAVSTPAFAQDMPSLSWRLASAFPAALDLRIGAGEQFCKFVSESTGGKFNIRHFPEGEIVPAADLLEAVSTNKVECGHGSSRAFYAKSPAFCFDAAVPFGLNARQMNAWMSEGDGLRLTRELFKPEKIINFPLGNTGAQMDGWYAKEIKRQADLKDLKMQMAGLAADVLARLGVAPQPASQAPLAEAFEKEGLQGIAGAGAYDDAKLGLNKVAKYYYGPGWCVPGEQLSLYINDEAWNKLPKHYQSVVQAAALAAHGSLTARYDARNPATLAQLSASGTQVRAFPRSILDVAFEATQKVYQDLSAKDARFKAIHDSYMGFRDSEMPWFRLTENAYGQYVAVALSGR
>CP034689.1|AZS77586.1|783649_784804_+|ABC-transporter-substrate-binding-protein
MQSKTKKLLAALIAAGIVPAAHAADIKLGVAEALSGGAAQYGVSIRNGFQLAADEINAAGGINGNKLVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPVAQAAKTVAFGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSGYDNFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQARQLGLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAPENVKFIDAYKAKFNGSPDQFAAQSYDALYIVAQALKNTKITGELAKDRAALRDALPAVTWTGATGPFKFRQAKDRAGKPAGYDADQSPIVSVTKDGKYVIEK
>CP034689.1|AZS77587.1|784976_785858_+|branched-chain-amino-acid-ABC-transporter-permease
MFEQQFVNALSLGCVYALFALGFTLIFGVLGVINLAHGAVFMVGAYAALFVVQQFGLPLWGALMAAFFVAGFTGVIIDYLVLKPLRKRNAPHLIPMIATIGVGIILNNGAQSIFGASNLRFPHGTVPEEVIEVAGLHLTVIELGIIFLSFALMAVLMYVMRRTQFGRALRAIAESPKAAWLLGINVEKLFVTTSFAAAALGGVAGVLIGLYSNALFPLMGQPMLHKGIAVIILGGMGDIRGAMLGGLFLGFAEVLSVAYIGSTMRDAVAFGLLFLILLVRPQGLFGKVVQRKA
>CP034689.1|AZS77588.1|785861_786743_+|branched-chain-amino-acid-ABC-transporter-permease
MSGFENFWAIYGNLVLTLGTNALLALSIWLTLACGMLAMANAAFMGIGAYTAALLTMNYDAPFSVALAGGMAAPALVAALIGLPTLRLSGVYLAMATLGFGEVVRVTILNTESLTGGALGLNGIPQLTQWWHVVLAVVIVLFVLWRVRASKIGRSFDAIRGDETAAGLMGIDVRANKMLAFVAGAMIAGLAGALNAHLTFFIGPNEYGFDRGVEILTMAILGGIGGLAGPVLGSFIITVLPELLRGFADLRLVANGVILVVIVLFLPQGIWDPARFKRWMRQGSGGQGGKRHA
>CP034689.1|AZS77589.1|786735_787524_+|ABC-transporter-ATP-binding-protein
MLELSSVSKSFGGLHVLHDVNLSVPEGSIFGLIGPNGAGKTTVFNLITGLLPPSGGTITFQGDSVLGKKPHSITRMGIARTFQNIRLFKEMTLLENVVVGAYRHMNYGFPSLLLGLPAYREHEKRARERAHELLTWMRLDHKANDLADNLSYGEQRRLELARALATEPKLLLLDEPVAGMNTGERAELMREILAIRDRGYTILMIEHDMRFVMGLCERIAVLNFGKIIACGGPDEIRNNEQVIEAYLGREDDEDTEQVEAAK
>CP034689.1|AZS77590.1|787579_788290_+|ABC-transporter-ATP-binding-protein
MSAMLEVRGLEVNYGHIEAVRGIDLDLNANEITALVGANGAGKSTTLLALSGLLPKARGRVMFEGEDITNLAPHQLVARGIVQVPEGRAILTTMTVQENLELGAYRRGLKNVGSDLEYVFNLFPRLKERITGIAGNLSGGEQQMLAIGRALMAKPRLLLLDEPSMGLAPIVVQEIFRSLRAINADGLTLFLVEQNVRQALKIAQSGYVLENGAMALSGTGRELLGHPRVLEAYLGA
>CP034689.1|AZS77591.1|788607_789036_+|50S-ribosomal-protein-L13
MKTFVAKPHEVQRDWFVIDAKGKVLGRVASEVARRLRGKHKPEFTPHVDTGDYIVIINASDIVVTGTKAKDKKYFRHTTYPGGIRETNFEKMQERFPGRAIQKAVKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQPKTLDI

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Crispr_ID: CP034689_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034689_3

3471542-3471641

Orphan

Consensus_repeat	Method
TTGGTTCGCGCTGCACCCATCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034689_3

>merge|CP034689|3|3471542-3471641|CRISPRCasFinder
TTGGTTCGCGCTGCACCCATCCTACGGACGGGGTGATGGGTTTCGCGCGAATTACGGCGGTGTTCTTGCGACGGTTGGTGCGCGCTGCACCCATCCTACG

>CP034689|3|3|3471542-3471641|CRISPRCasFinder
TTGGTTCGCGCTGCACCCATCCTACG	GACGGGGTGATGGGTTTCGCGCGAATTACGGCGGTGTTCTTGCGACGG
TTGGTGCGCGCTGCACCCATCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
CP034689.1\|AZS79786.1\|3481800_3482961_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
CP034689.1\|AZS79787.1\|3482978_3484352_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
CP034689.1\|AZS79775.1\|3466190_3467873_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
CP034689.1\|AZS79772.1\|3462570_3463919_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP034689.1\|AZS79770.1\|3461059_3461449_+\|hypothetical-protein	unknown	unknown	unknown
CP034689.1\|AZS79771.1\|3461491_3462457_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
CP034689.1\|AZS79776.1\|3467878_3468655_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
CP034689.1\|AZS82631.1\|3478202_3479972_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
CP034689.1\|AZS79783.1\|3476080_3477301_-\|oxygen-independent-coproporphyrinogen-III-oxidase-like-protein	unknown	unknown	gnl\|CDD\|236346
CP034689.1\|AZS79778.1\|3469712_3470411_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
CP034689.1\|AZS79781.1\|3473228_3474293_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226370
CP034689.1\|AZS79785.1\|3479840_3481613_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
CP034689.1\|AZS79777.1\|3468680_3469586_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
CP034689.1\|AZS79788.1\|3484550_3485285_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
CP034689.1\|AZS79774.1\|3465034_3466078_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
CP034689.1\|AZS79779.1\|3470588_3471503_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
CP034689.1\|AZS79780.1\|3471732_3473229_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
CP034689.1\|AZS79782.1\|3474484_3475897_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
CP034689.1\|AZS79773.1\|3463996_3464773_-\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
CP034689.1\|AZS79784.1\|3477306_3477930_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648

Protein	Function_ID	Function_description	E-value
CP034689.1\|AZS79786.1\|3481800_3482961_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.53541e-110
CP034689.1\|AZS79787.1\|3482978_3484352_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	1.30747e-152
CP034689.1\|AZS79775.1\|3466190_3467873_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.98663e-105
CP034689.1\|AZS79772.1\|3462570_3463919_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.25318e-44
CP034689.1\|AZS79778.1\|3469712_3470411_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	9.79791e-77
CP034689.1\|AZS79771.1\|3461491_3462457_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.10985e-130
CP034689.1\|AZS79776.1\|3467878_3468655_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.46218e-108
CP034689.1\|AZS82631.1\|3478202_3479972_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.53642e-56
CP034689.1\|AZS79783.1\|3476080_3477301_-\|oxygen-independent-coproporphyrinogen-III-oxidase-like-protein	gnl\|CDD\|236346	PRK08898, PRK08898, oxygen-independent coproporphyrinogen III oxidase-like protein.	0
CP034689.1\|AZS79781.1\|3473228_3474293_-\|PAS-domain-containing-protein	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	6.10412e-114
CP034689.1\|AZS79785.1\|3479840_3481613_-\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.85653e-100
CP034689.1\|AZS79777.1\|3468680_3469586_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.91755e-90
CP034689.1\|AZS79788.1\|3484550_3485285_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	8.00531e-169
CP034689.1\|AZS79774.1\|3465034_3466078_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.12674e-158
CP034689.1\|AZS79779.1\|3470588_3471503_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.56692e-83
CP034689.1\|AZS79780.1\|3471732_3473229_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
CP034689.1\|AZS79782.1\|3474484_3475897_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
CP034689.1\|AZS79773.1\|3463996_3464773_-\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.27323e-112
CP034689.1\|AZS79784.1\|3477306_3477930_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.31535e-108

>CP034689.1|AZS79779.1|3470588_3471503_+|LysR-family-transcriptional-regulator
MQPITPELLILVDAIARHGSFAKAARELGKVPSAVTYSIRKLEDGLDVLLFDRSGHRALLTPAGEALLKDGRHVLQSLDDLACRVKRIATGWEVELRIAVSAVLPWRPLYDLIAEFQTLESATTLRFSSEVLSGNWDALTSNRADLVIGAGANAEPTGPYRSQAIGTTQFGFCVAAHHPLASLPQPLSRADITKYCAVVVADTSRNLPPQSRGILADQATLVMPSMQAKIDAQVRGLGCGYLPLTMAAPYLAQGLLVVCETDEGMSLTEHVAYAWRAEAPGEALKWWLQKLKSPRLCESLLGMG
>CP034689.1|AZS79778.1|3469712_3470411_-|pirin-family-protein
MLTIRRANERGHANHGWLDSFHTFSFANYYDPAHMGFGSLRVINDDRIAAGRGFGTHGHRDMEIITYVLDGAIAHKDSMGSGSTIKPGNVQRMSAGRGVMHSEFNPLPDTETHMLQIWIEPDVTGIAPEYEEREFSDAEKRGRLQALVSPDGEGGSMKIHQDARLYGGLFDGEESATLELATGRRAWVHVARGTLTVNGVELSGGDAVAITDETRVELSAGKKAEVLVFDLA
>CP034689.1|AZS79777.1|3468680_3469586_-|pirin-family-protein
MSTLSEAGESQIETIVVPRTSDLGGFSVRRAIPSAQRRTVGPFVFLDHMGPADFDVGAGIDVRPHPHIGLSTVTYLYEGSMVHRDGAGHTQTILPGEVNWMTAGRGIVHSERSSPEARLSPQRLCGLQIWVGLPTKYEETDPGFTHYGLDAQPVIEGEGVRAQVVAGSLFGKTSSVKTLSPLFYGDLQLQAGATTVLPAEYEERAAYLAQGTVEVDGQVFESGRLVIFAPGRPVQIRAITAARFAVIGGEPLDGPRYVWWNFVSSSKDRIEQAKQDWQRTRFDQVVPGDETEFIPLPEPRV
>CP034689.1|AZS79776.1|3467878_3468655_+|ABC-transporter-ATP-binding-protein
MPDPLEIEHLSLAYDTPKGLKPVVQDLSLGLPVGHIGCLLGESGCGKTTVLRAIAGFEPVRAGRILLDGTVISSPTEQVAPEHRRVGMMFQDYALFPHLTVALNVAFGLRKLPRIERARRVEEMLTLVGLAHAANSYPHEISGGQQQRVALARALAPSPDLLLLDEPFSNLDVDTRERLAFEVRDILKTTGHTAMLVTHNQAEAFAIADRIGVMSQGSIAQWDTPYNLHHRPSNDFVRDFIRREALEEQREQAFARGR
>CP034689.1|AZS79775.1|3466190_3467873_+|iron-ABC-transporter-permease
MHTESLPRPLPRPMRLRWTERGAGWLAGAGLIALAVLAPVLTLGWWALGGDLAHWQHLASYVLPQALANTAMLLAGVGVVVTLLGTGAAWLVTAYDFPTRRILTWALLLPLAVPTYIIAFAYLDLLHPIGPIQTAIRTLLGYDSPRQFRLPDLRSIYGAIFVLGFVLYPYVYLSTRVMFMTQAASLLEAARTLGAGRVAVFCRVALPLARPAIVVGVSLALLETLNDIGASEFLGVQTLTVSVYTTWVTRSDLAGAAQIALTMLAIVIGLILLERHGRKRQRYANTQRMRPMQARRLRGPAAAVAAVLGWIPVMLGFVAPALYLVVETYKRLHLVGGVSEQLINGLSNTLIVAFSATIVTLLCGLIVAWAGRTLRESASFNPGRACARIASLGYAVPGTVLAIGLLTPFVWIDTAVAKVFGGTGLFLMGSMAALVCAYVIRFLAISTGALEAGLARIPPSLEQASRLLGESAGGTLRRVHLPLLRPALAASALLVFVDAMKELPATLLLRPMNFDTLATWLYAEAARGTYEEGAVAALAIVLAGLLPVILLARTNLKMGH
>CP034689.1|AZS79774.1|3465034_3466078_+|Fe(3+)-ABC-transporter-substrate-binding-protein
MTKRPQLNSLLRALALAGAAAFTVSANAAEEVSLYTTREPKLIQPLLDAFTKESGIKVNTVFVKDGLLERVKAEGAKSPADVLMTVDIGNLLDLVDGGVTQSIKSQTLESVIPANLRGADGKWYALSLRDRVLYVEKDLKLESFRYEDLADPKWKGKVCIRSGQHPYNTAMIASMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAQPGTDARKWGDAIKVIRPTFANEKSGGTHVNVSGAAVAAHAPHKENAIKLLDFLVSEPAQALYAQANYEYPVRKGVKLDPVIASFGELKVDPLPLTEIAKHRKQASELVDKVGFDN
>CP034689.1|AZS79773.1|3463996_3464773_-|ferredoxin--NADP-reductase
MAAFNTERVLSVHHWNDTLFSFTTTRDAALRFHNGHFVMIGLEVEGKPLLRAYSIASANYEENLEFLSIKVQNGPLTSRLQHLKEGDTILVSRKPVGTLVVDDLKPGKHLFLFGTGTGLAPFMSIIKDPDIYERFDKVILVHGVRWVSELAYADFIEKELPNNEFFGDVVRDKLVYYPTVTREPFRNQGRITELMENGKLCDDIGIPQINPETDRAMICGSPHMLADISAMLDKRGFTVSPGVGQPGDYVVERAFVDK
>CP034689.1|AZS79772.1|3462570_3463919_+|IS3-family-transposase
MAKYDEQFKLDAVRRYLSEQHSYAEVAREVGVDYALLRRWVAVYQLHGRAGLVRPRKRYSAQFKFEVLKRIEQDGLSDRQAVAVYNLGDSGAIGKWRRGYDEGGMGALAPRRRDSPAMPHKYPPEPTAKDMTEKQLREENAYLRAELDYLKKPRCLDPSGTDRSAGEKAQMVQGLRHRHPLALLLRAAKLSRSTFYYHLKALGAVDPYAELKQRIDAVYAQHKGRYGYRRITAVLRQAGELVNHKTVQKLMQALGLKSLVRAKKYRSYRGQSHHVAANVLARRFEAERPNEKWVTDVTEFNVRGEKLYLSPVMDLYNGEIVAYETALRPVFKLVGSMLKKALARLRPTERPVLHSDQGWQYQQPIYRRMLAARSVTQSMSRKGNCLDNAAMESFFGTLKAEFFHLNRFESIEQLQAGIRQYIHYYNHNRIKLKLKGLSPVQYRAQAFGL
>CP034689.1|AZS79771.1|3461491_3462457_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MRISSKGRLALLLAAALPLTALAQSFPTKPITFIVPFAAGSATDQIGRAIGQGVTEQTGQAVVIENKPGASAMIGAAAGARATPDGYTVLITTNTTHAANEHLYKSLTYHPVKDFAPITLLGKGGQIMVVNPSSPAKTVGEFLAQAKKQPGKLSFGSGSSSSRIAGELLQQMAGVQLLHVPYKSNPLAVTDLLGGQIDMMITDTATGLPQVKSGKLRALGVTGTARSPLAPDVPTIAEAGVPGYEMGYWFAAYAPAGTPPDVVKRLNELLVNATKAKPAQQFYAQTGTDAASSTPDELAKFQQAESKKWGEIIKKAGIKPE
>CP034689.1|AZS79770.1|3461059_3461449_+|hypothetical-protein
MTHSSNPQAVPLYRLAHSRSGDKGNISNLSLIAWDPECYEVLVAQVTEARVADWFAYRHPARVTRYLIPTLHAMNFVLDGVLDGGVNDALNLDTHGKSLSFRLLDLTVEVSAELARRLPDVPGDRPAAA
>CP034689.1|AZS79780.1|3471732_3473229_-|nitrogen-regulation-protein-NR(I)
MKPVWIVDDDQAIRWVLEKALARAGVPTRSFSQSADVLEALSRETPVALVSDIRMPGGNGLELLRQLKERHPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAMQESAQPESPEGQGEGAQNNERWMMTQSSSTAMQEVFRAIGRLAQSKVTVLITGESGTGKELVARALHGHGVRASGPFVALNAAAIPRDLLEAELFGHERGAFTGANNLRRGRFEEAHGGTLFLDEIGDMPIELQTRLLRVLAEGSFYRVGGAQPVRVDVRIVAATHQPLEQRVEQGLFREDLFHRLNVIRLRLPPLRERVEDIPALAQHFLTASARTLGVPVKRLTPDALAVLTKFDFPGNVRQLENFCHWLTVMAPGQTVDRADLPPEIRALEHQQQQPASAPLRPAAPISGIGTVVQAGQAADDGAPRNWQDSLLRDAQYRLERGEPAVMATLTRQFEKILLQSALDASRGRRVEAASRLGIGRNTITRKLRELGIEDE
>CP034689.1|AZS79781.1|3473228_3474293_-|PAS-domain-containing-protein
MNVEALDLLATSVFLVNERGHIEYANAAAEDLFGRSRKQLCGHSAATLFDTPENIQSSIDRAAAGRYADVRQLASLRRAAESVEVAVTTVGLTGQRWPVLIETREIEQRVLADRNHRLVDEIEAHRELLRNLAHEVKNPLGGLRGAAQLLEAELPSAALAEYTQVIISEADRLQALVDRLSGPQRVPLNARPVNIHEICERVCALIQAEFRNDVTILRDYDASVPDLKGDAARLMQAVLNVARNAAQELVARPQGPQTEPGVVTLRTRVARQVMLAHRQHRLALVLSIIDNGPGVPDHIRDRIFHPLVTARAGGTGLGLSLAQDFVQQHGGIIEFESRPGRTEFRLVLPMEPAH
>CP034689.1|AZS79782.1|3474484_3475897_-|type-I-glutamate--ammonia-ligase
MASPKDVLKQIADNEVKFVDFRFTDTVGREHHVSVPTSAIDEDKLESGQAFDGSSIPGWKGIEASDMLLIPDCSSANLDPFREEPTLILSCDVVEPSDLKGYDRDPRSLAKRAEAYLKSSGLGDTAYFGPEPEFFVFDGVTWNTDMSGTFVKIKSEEASWSTGLEFEGGNTGHRPAVKGGYFPVPPVDSFQDMRSEMCLLMEQMGVPVEVHHHEVAGAGQLEIGTKFSTLVQRADWTQIVKYVVHNVAHAYGKTATFMPKPVVGDNGSGMHVHQSIWKDGQNLFAGNGYAGLSEFALYYIGGIIKHARALNAITNPGTNSYKRLVPHYEAPVKLAYSARNRSASIRIPYVGNPKGRRVEARFPDPLANPYLAFSALMMAGLDGVQNKIHPGDPADKNLYDLPPEEDAKIPTVCSSLEQALEALDADREFLTRGGVFSNDMLNAYIDLKMADVNRLRMTTHPVEFDMYYSL
>CP034689.1|AZS79783.1|3476080_3477301_-|oxygen-independent-coproporphyrinogen-III-oxidase-like-protein
MSITIPIRNDMGASPSRVRLPPGATLTSLPPLSIYVHVPWCVRKCPYCDFNSHAAPGEIPERAYLDALRSDLEQALPSIWGRQVVSVFIGGGTPSLLSSAGLDELLAMLRACLNLWPDAEITMEANPGTAEASRFRDYAASGVTRFSLGIQSFDDAQLQKLGRIHDAAQARAAIDMAQRAVSRVNLDMMFALPGQSLDACVADLRQAISFGTEHLSLYHLTMEPNTVFAKFPPAELPDDDTSAAMQDAVEAELAAAGLARYEVSAYAKAGARCRHNLNYWEFGDYLGIGPGAHGKLSFHDRIVREARLRNPDSWMQAAMARDGSHLAESRQVGPDELPFEFMLNALRLKDGVPATAFNERTGLSLAAIAHQLEAASKRGLLDADPTRLKATPLGWRFLNDLQEMFL
>CP034689.1|AZS79784.1|3477306_3477930_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MTSPKIPESLRRIVLASNNAGKLREFSALFAPLGVELVPQGELGVPEAEEPHVTFVENALAKARHASRLTGLPALADDSGLCVAALDAAPGVYSARYAQMHGGEKSDQANNTLLVRNLAGVTDRHAWYVAVLALVRSENDPCPIIGEGLWHGEIIDQPEGANGFGYDPHFYLPDMALTAASLDPEEKNRVSHRARALRELLSKLSHA
>CP034689.1|AZS82631.1|3478202_3479972_+|EAL-domain-containing-protein
MAGILQDRLLRPRYQPVVDLSHTRIYGHESLIRGPADTALHFPDALFAEARRRGLHPQLELASFRAGAQGFHDHDASGKLFLNLSGSALIHYWTLWGSDMPRHLLEDCTLPASSIIVELTEQDPLSDHIGELGNAFACLREHGMRIALDDYGVGNSNLQLWSEIQPDLVKIDRYFFDGIGHDDRKQSMVRAILKVAQHLGTAIVAEGIETAEDLAVVRELDIRYAQGWFLGRPEETLLTELTAPVRDSLRVRSTAPLSQRAAGGTAASLRVEAPAALLDKHTNDDVHRLFIEHKTMHAVAVVDADNRPVGIINRRDFSEHYAQRYTRELFGRDRCSTFMNAEPVLVDLNVSIDQLSHVLISEDQRYLMDGLIITRDGRYDGLATGETLVRSVTEMRIEAARYANPLTSLPGNIPISRHIATLLEDAADFTVCYGDLNNFKPFNDVYGYWRGDDMIMLTAEVIKHHCDPLRDFVGHVGGDDFVVLFRSPDWTERVQRIIAEFNEQATALYDDLGRKNGGIEAEDRYGVPRFFPFVTLGVGALTVTPSLCERIRPEDIASAAANVKHKVKHGNLSLVIERYTGGVLPQLAD
>CP034689.1|AZS79785.1|3479840_3481613_-|HAMP-domain-containing-protein
MALRLTAPGFRRMDMRKNLRVTTAVSAILALFVLLFAIAAAAGIAVLRDNRADIEALGRGSIERASDLADMTSRLFQARAALADAKTSMEGGLEEARNQSLAHAEALLKQAGESLAQLRANPDTSAQGGPLYEQLLAAYTAFADQTMTPMLQATQAWNGIEVNRLVDKVLPDSGAAYVKQADAYQTYAREQGQAAVASASQTLQHVIMVAGAVLAVVLVLAVLIRLAFRRSILRPLNEAGAHFDRIADGDLTGAIAMRGDNEIGVLYSAMRRMQTGLSAAVASVRRGVEEIHTGSGEIAAGGADMSDRTARQAGSLQEAAANMTQLAHTVQLTAGNADLASRQAESATQLAQRGGRAVDEVVQSMQGIADSARRIGEIVGVVDSIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKGLIEDSASRVQAGVRQVNLAGDTMRDMVVSVDRVTQIVAEISNATAEQAAGIASVNDAVADIERTTQENAAMVEQTAAAAAALEIQAQGLRRAVAVFQIAQAAQNASAVQASVGQLIGQLGQDAAGVALDHQRQVPMLDLVLDVRGGRRDVLRADALA
>CP034689.1|AZS79786.1|3481800_3482961_+|acyl-CoA-dehydrogenase
MPHASHDYQDIREAVRDLCAQFPGEYFRKVDEERGYPEDFVRALTEAGWLAALIPQEYGGSGLGLTEASVIMEEINRSGGNSGACHGQMYNMGTLLRHGSEAQKREYLPRIAAGELRLQSMGVTEPTTGTDTTKIKTTAVRRGDRYVINGQKVWISRVQHSDLMILLARTTPLDQVTRKSEGMSIFLVDLHHAVKHGMTIRPIPNMVNHETNELFFDNLEIPVENLIGEEGKGFKYILDGLNAERTLIAAECIGDGYWFVDKVTAYAKERMVFGRPIGQNQGVQFPIARAHINVEAASLMRYEACRLFDAHQPCGAQANMAKLLAADASWEAANACLQFHGGFGFATEYDVERKFRETRLYQVAPISTNLILSYVAEHILGLPRSF
>CP034689.1|AZS79787.1|3482978_3484352_+|MmgE/PrpD-family-protein
MTASKDTSDLSAELAAFAANLRYEDIPAPVLRRAEDLLLDCLASILAGASARAVLAIDRYAATMGPADGPSEVLINRRRTTPLFAAMVNAAAAHVVEQDDVHNGSVFHPAAVVFPPALAVAQALGSSGRDLLVASVAGYEVGIRVGEFLGRSHYKIFHTTGTAGTLAAAVTTGRLLKLTPDQMLHALGSAGTQAAGLWEFLRDAADSKQLHTAKAAADGMTAAYLAQEGFTGARHILEGPQGMAAGMSTDADPSKLCDRLGERWALAETSFKFHASCRHTHPAADALQQALRDNKLTEADVERVVAHVHQGAIDVLGPVVNPQTVHQSKFSMGTVLALIARQGRAGLAEFDAGLDDPAVAVFRGKVEMALDPEVDNAYPQRWIGKVTVTTRDGRTLHGRVDEPKGDPGNTLSRPEIEDKTLSLGRYANAATEQELRGLIDKIWALEKAEKVGALLPT
>CP034689.1|AZS79788.1|3484550_3485285_-|ribonuclease-PH
MTTTPTIARPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQADGGTRCASITGAWVAAADAVALLMQRGDVAVNPIRDAVAAVSVGLVQGRSVLDLDYQEDSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAQLVQAQRAALV

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Crispr_ID: CP034689_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034689_4

5108149-5108254

Orphan

Consensus_repeat	Method
ACCCGCCATCGCGCAAACCCAACATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034689_4

>merge|CP034689|4|5108149-5108254|CRISPRCasFinder
ACCCGCCATCGCGCAAACCCAACATCCCCCGCAAGCCGTAGGATGGGTGCAGCGCGCGATGCACCAGCCAAACGCACAACCCGCCATCGCGCAAACCCATCATCCC

>CP034689|4|4|5108149-5108254|CRISPRCasFinder
ACCCGCCATCGCGCAAACCCAACATCCC	CCGCAAGCCGTAGGATGGGTGCAGCGCGCGATGCACCAGCCAAACGCACA
ACCCGCCATCGCGCAAACCCATCATCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP034689.1\|AZS81106.1\|5098103_5099072_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP034689.1\|AZS81110.1\|5102364_5102853_-\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
CP034689.1\|AZS81115.1\|5108262_5108706_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239538
CP034689.1\|AZS81105.1\|5097409_5098114_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
CP034689.1\|AZS81118.1\|5113408_5114317_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236167
CP034689.1\|AZS81107.1\|5099173_5100112_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
CP034689.1\|AZS82752.1\|5111566_5113237_-\|benzoyl-CoA-dihydrodiol-lyase	unknown	unknown	gnl\|CDD\|181274
CP034689.1\|AZS81117.1\|5110090_5111518_-\|benzoyl-CoA-2,3-epoxidase-subunit-BoxB	unknown	unknown	gnl\|CDD\|200253
CP034689.1\|AZS81108.1\|5100224_5101169_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182228
CP034689.1\|AZS81120.1\|5115048_5116668_+\|benzoate-CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|341269
CP034689.1\|AZS81109.1\|5101350_5102355_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
CP034689.1\|AZS81111.1\|5102891_5103875_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
CP034689.1\|AZS81122.1\|5117935_5118817_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
CP034689.1\|AZS81119.1\|5114495_5114972_+\|DUF4863-family-protein	unknown	unknown	gnl\|CDD\|379780
CP034689.1\|AZS81121.1\|5116749_5117910_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|380667
CP034689.1\|AZS81113.1\|5104967_5106650_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|181285
CP034689.1\|AZS81112.1\|5103916_5104831_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP034689.1\|AZS81116.1\|5108785_5110036_-\|benzoyl-CoA-2,3-epoxidase-subunit-BoxA	unknown	unknown	gnl\|CDD\|132268
CP034689.1\|AZS81114.1\|5106782_5107976_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
CP034689.1\|AZS81123.1\|5118819_5119881_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323

Protein	Function_ID	Function_description	E-value
CP034689.1\|AZS81106.1\|5098103_5099072_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	9.8532e-122
CP034689.1\|AZS81110.1\|5102364_5102853_-\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.51185e-63
CP034689.1\|AZS81115.1\|5108262_5108706_-\|MaoC-family-dehydratase	gnl\|CDD\|239538	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	8.45124e-70
CP034689.1\|AZS81105.1\|5097409_5098114_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.09256e-53
CP034689.1\|AZS81118.1\|5113408_5114317_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236167	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed.	1.14641e-162
CP034689.1\|AZS81107.1\|5099173_5100112_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	3.67259e-63
CP034689.1\|AZS82752.1\|5111566_5113237_-\|benzoyl-CoA-dihydrodiol-lyase	gnl\|CDD\|181274	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.	0
CP034689.1\|AZS81117.1\|5110090_5111518_-\|benzoyl-CoA-2,3-epoxidase-subunit-BoxB	gnl\|CDD\|200253	TIGR03225, benzo_boxB, benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. [Energy metabolism, Other].	0
CP034689.1\|AZS81108.1\|5100224_5101169_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182228	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT.	2.32185e-34
CP034689.1\|AZS81120.1\|5115048_5116668_+\|benzoate-CoA-ligase-family-protein	gnl\|CDD\|341269	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase). Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process.	0
CP034689.1\|AZS81109.1\|5101350_5102355_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	5.0826e-131
CP034689.1\|AZS81111.1\|5102891_5103875_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	6.01925e-159
CP034689.1\|AZS81122.1\|5117935_5118817_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.90702e-63
CP034689.1\|AZS81119.1\|5114495_5114972_+\|DUF4863-family-protein	gnl\|CDD\|379780	pfam16155, DUF4863, Domain of unknown function (DUF4863). This family consists of uncharacterized proteins around 150 residues in length and is mainly found in various delta- proteobacteria, but also several fungal species. Distant homology analysis suggest proteins from this family have a cupin-like fold and may be related to a group of lyases involved in the metabolism of benzoate. Few proteins from this family are annotated as p-hydroxylaminobenzoate lyases, NbaB, and this proposed function matches well their phylogenetic distribution, but there seems to be no direct experimental verification of this function, therefore at this point we call it a DUF.	2.15525e-79
CP034689.1\|AZS81121.1\|5116749_5117910_+\|ABC-transporter-permease	gnl\|CDD\|380667	cd20014, PBP1_RPA0668_benzoate-like, type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs. This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).	5.39479e-157
CP034689.1\|AZS81113.1\|5104967_5106650_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|181285	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.	0
CP034689.1\|AZS81112.1\|5103916_5104831_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	7.75987e-66
CP034689.1\|AZS81116.1\|5108785_5110036_-\|benzoyl-CoA-2,3-epoxidase-subunit-BoxA	gnl\|CDD\|132268	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB. [Energy metabolism, Other].	0
CP034689.1\|AZS81114.1\|5106782_5107976_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
CP034689.1\|AZS81123.1\|5118819_5119881_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.43006e-70

>CP034689.1|AZS81114.1|5106782_5107976_+|acyl-CoA-dehydrogenase
MSSNPSFQWQDPLLLDQQLTEEERMVRDAAYAYSQDKLAPRVLNAFRNEKTDPEIFSEMGELGLLGATIPEEYGGAGMNYVSYGLIAREVERIDSGYRSMMSVQSSLVMVPINEFGSEAQKQKYLPKLARGEWIGCFGLTEPNHGSDPGGMETRAVKTSDGYKISGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILDKGMKGLSAPAIHGKVGLRASITGEIVMDEVEVSEDQMMPGVSGLKGPFTCLNSARYGIAWGAVGAAEACWHTARQYTLDRKQFGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAFY
>CP034689.1|AZS81113.1|5104967_5106650_+|thiamine-pyrophosphate-binding-protein
MSQQDSRLGGHILVDQLVAQGVKHVFCVPGESYLAVLDGLHDADIKVTVCRQEGGAAMMADAHGKLTGEPGICMVTRGPGASNALAGVHIAKQDSTPLILFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEIDQVERIPELISRAFHIATSGRPGPVVIALPEDMLVEAAKVADAPRYELIDSAPTAGQLADLEKLLADAKNPVAILGGTRWDARAVQQFADFAQRHALPTAVSFRRQMLFPADHPCFIGDVGLGINPALLKRVADADLILLVGGRMSENPSQAYTLLDIPVPKQKLVHVHPDTAELGRVYRATLAINTSPAAFAESLGSLKAPAKPVWAEGTQAMRESYLKWSDPEAVTTPGALQMGQVMAYLEKTLPADAIMTNGAGNYATWLHRFHRFTRFGTQLAPTSGSMGYGLPAAVGAKRVWPDKTVVCFAGDGCFLMHGQEFATAVQYDLPIVVVLVDNGMYGTIRMHQEKHYPGRVSATELKNPDFADYARAFGGHGERVETTEQFGPAFERALASGKPAILHCFIDPETISPSTTLEKIRDAALKAQH
>CP034689.1|AZS81112.1|5103916_5104831_-|LysR-family-transcriptional-regulator
MRNGIPNLTALQAFEASARLGSFSRAAEELSLTHSAVYRQVASLEARLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQIEKDTFGLVSRTGMGRSIHIAVVPTLATTWLIPRLADFQRAHADITVSLSVRTLPFQFKDQPFDGAVYHGDALWPGTQGVLLFPERELVPVCAPELAARAAQEAQAGVSVLAGMTHLHLASRPDAWRQWYAANNHLYGPQAAGGPRYELFTMVMAAVQAGLGVGLMPRFLAQPALDQGTLAMPVPQSLTVSQGYYFGYPQRSDRSDALKLFEAWLKSAAAGVGER
>CP034689.1|AZS81111.1|5102891_5103875_-|site-specific-tyrosine-recombinase-XerD
MTTSRPPLASQPDIDAFIDAVWLEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRQGDAASAQTLPVGPAKPLCDAQKADIEAWFAFRHEETRATTANRRLAALRRFFAWALREHRSERDPCLTLIAAKQPPRLPKTLSEQQVDALLRAPDVTQPRGLRDRAMLETLYATGLRVSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDQYLKTARLELAAGRQSDALFITGRAEAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRG
>CP034689.1|AZS81110.1|5102364_5102853_-|Cys-tRNA(Pro)-deacylase
MSKARHVSETPATQLLKQHKVPYTEHTYDYVDHGGAGEAARQLGLDPHAVVKTLVMEDESAKPLIVVMHGDREVSTKNLARQAGLKRVEPCKPEVAQRHSGYQVGGTSPFGTRKKMPVWVEADVLSYPVVYINGGRRGYLIGIDPNALVTVLGAKPVSVALE
>CP034689.1|AZS81109.1|5101350_5102355_+|NADP-dependent-oxidoreductase
MQAFFIERYKDIGKLGQLPEPSVGDNDVLVRVHAASVNALDAKIRKGEFKLILPYRFPLVLGNDLAGVVVRVGRNVRQFKPGDEVYGRPPDDRIGSFAELIAVNEDALALKPRNLNMEQAASLPLVALTAWQVLVETAQVKPGQKVLIHAGSGGVGTIAIQLAKHLGAFVATTTSTPNVDWVRDLGADVVIDYRTQAFESTLRDYDVVLNSLGPDVLDKSFQVLKAGSGARLISISGPPTPAFAKQQGLSWGLKQALRLLSWRVRRKAANAGVNYDFVFMRAHGEQLRQITGLVESGAIRPVIDRVFPLAAAHEALAYVESGRAKGKVVVRLSA
>CP034689.1|AZS81108.1|5100224_5101169_+|LysR-family-transcriptional-regulator
MGPGNRPLDMNWLEDFCSLAETGSFSRAAEARAIAQPAFSRHIRALEEWVGADLFDRSTHPTELTAAGRKFLPLLKQVMADLEAARIKALAAHAQEGASLRFAATHLLSLTFFPQWLTRLEAALEVGAIQMMSDSFQACEDLMAQRRVQFLLCHRHPQVASRLDEVPYPKVHLGTDMLVPVCAPAAGGLADTPAHRLDDDGVVPFLAYGPASGLGRIVSHQLRHKAMPAERIQTAFVGPHATLLRSMAIQGRGIAWLPDMLVHDDLQQGSLIRAGGKEWDIPLDICLFRQPSDMAAVAENLWALVAAGNPSPRE
>CP034689.1|AZS81107.1|5099173_5100112_-|dihydrodipicolinate-synthase-family-protein
MASISNYRGIIPAISCPFTDDHRIDEPALRRLASWLAGHAGVVAVMTNGHTGEVFSLTPSERAQVTRIVADELRGKLPVISSIVCEGIAEAQEHARAAREAGAAALDVMPPHHWLRFGFTPGHALAYFQAIHEAAPDLDLVCHVYPAWTRASYSAKLMGDLARLPYVQAFKVGQRDMNKYARDIQALREADASKAILTCHDEYLLASMVQGVDGALVGFATFIPQLIIDLWDAVKAGDLKRAQQVQALITPLKDAVYGGGEPTGEAHARMKAGMYLAGVLESATVRPPTEAPDDADMQALRAALTGAGLLAR
>CP034689.1|AZS81106.1|5098103_5099072_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKRIALRAMVALCLAIGGGMAHAQDTYPSRQVRFVIPFPPGGTLDMLGRDLAQKLSEQTGQSFIVENRSGGNGIIGADVVAKSPADGYTLLFNASTFTTAPMTMKAVPFDVNKNFVPVAMAGKAPLSVSVKKDLPVTDLAGLLAYAKKNPGQLTFAVGSIGSAGHLATELLKRQGGLDYMVIPYRGTSPALQDLVGGRIDGFIDPVLGAVSYYKSGMLKILAVTSDARLPNLPDVPTVSEVLPGYQFYSWYGLWAPAGTPGAIVEKLNAEVNKALASGMTAKYEQLGVSLTPGSAAAFARFQKDDMARSRKIIQEGNIHVE
>CP034689.1|AZS81105.1|5097409_5098114_-|SDR-family-oxidoreductase
MSNKPAGALAVVTGATGGIGLAIVQRLLDAGWQVAGLDIGPAVARHAAYRHIIVDLCDEAAARQALQGCKHAGALVHAAGIMRVGPLAQLDPADGERMWKLHVDVAVRLAQVLTPGMAERGDGRVVLVGSRTAQGMPGRSQYAASKAALVALARSWAAELAPQGVTVNVVSPAATQTGMLQDPARAGSAPRMPPIGRLIQPEEVAALVAFLLSPQAGAITGQDIAICGGASLPR
>CP034689.1|AZS81115.1|5108262_5108706_-|MaoC-family-dehydratase
MKFAEFKDGMLIKAGPVTITEAEILEFARKFDPQWFHTDPKRAAEGRWGGLIASGWHTCALAMRMAVDAALHDSESFGSPGLGEVRWRTPVRPGDTLRLEARVQGARTSSSRPDLGIITWSWTVINQHDEGVLEMDATSLFDLSGEN
>CP034689.1|AZS81116.1|5108785_5110036_-|benzoyl-CoA-2,3-epoxidase-subunit-BoxA
MNAPLPAQVLKQHLIDPEICIRCNTCEETCPVDAITHDSNNYVVDPDICNGCMACVPPCPTGSIDNWRLMVRSEAYSVQEQFGWEELPKEKALPVVDDATAAAPSSDEASDVLAQPAAQTTFTLPGASVPPWSAAHPYVNLYTHKAPMTATVVGNYRVTGADTESDIHHIVLDFGELPFPVLEGQSIGILPPGVDAQGRPHHARQYSLASPRDGERAGYNNLSLTVKRVTEDHGGVAAHGVCSNYLCDLAKNDTVQVIGPFGHTFLMPNHPRANLIMICTGTGSAPMRAMTERYRRRIDTGENGKLMLFFGARTERELPYFGPLMKLPRDFIDINLALSREPGQPKRYVQDLIRDRAGQVRELLADRNTCIYVCGLKGMEVGVLDALRDVTMQGGQDWSILHDMLRREGRLHFETY
>CP034689.1|AZS81117.1|5110090_5111518_-|benzoyl-CoA-2,3-epoxidase-subunit-BoxB
MSGINYTDKIPNNVNLSGDRTLQRALEHWQPNYLQWWQDMGPDGSHGFDVYLRTAVSVEPDGWANFDHVRMPDYRWGIFLAPQDGQRKIHFGENIGRDVWQDVPGEHRANLRRIIVTQGDTEPASIEQQRHLGLTAPSQYDLRNLFQINVEEGRHLWAMVYLLHRYFGRDGREEADALLQRTSGDADNPRILGAFNEKTPDWLAFYMFTYFTDRDGKFQLCALAESSFDPLARTTKFMLTEEAHHMFVGESGISRVIQRTCEVMNQLKTDDPQSVRAAGVIDLPTIQRYLNFHYSVTIDLFGADQSSNAAIFYGSGLKGRYEESKRTDDHQLKNDTYRVLSVNNGKLNEVEVPMLNALNEVLRDDFIRDSVAGIGRWNKVIEKSGIPFRLQVPHKAFNRQIGTLAGIRMSPEGEIVSEAQWQANSHKWLPTPEDRAFVASLMGRVTEPGKFANWIAPPVMGVNRQPVNFDYVRFN
>CP034689.1|AZS82752.1|5111566_5113237_-|benzoyl-CoA-dihydrodiol-lyase
MTEARVDFRTQPDQYRHWRLSFDGPVATLAMDVAEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVKSVVVTSMKDRIFCSGANIFMLGLSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAALNGACAGGGYELALACDEILLVDDRSSSVALPEVPLLGVLPGTGGLTRVTDKRRVRHDHADIFCTLVEGVRGQRAKDWRLVDDVVKPARFEAAVRERAMALAAGSDRQAEDAGIALTPIERTEGADHLSYRYVDIQVDRDKRLATWTVRAPEGEAPSELADILAAGAAWWPLQMARELDDAILTMRTNELDIGTWIFKTEGDANAVLAADAALQRHAGHWFVRETAGMLRRTLARLDVTSRSLFALIEPKSCFVGTLLELALAADRSYMLDSEADADADVDSPAARIVVGERNFGAYPMVNGQSRLQRRFYEETAPLEAVRARAGQALSATDALDLGLVTYAPDSIDWDDEVRMMLEERRALSPDALTGLEANLRFGGKETMETRIFGRLTAWQNWIFNRPNAAGDKGALKLYGKGEQAAFDWKRV
>CP034689.1|AZS81118.1|5113408_5114317_-|helix-turn-helix-domain-containing-protein
MNQALDAAPTEPRREAFLVALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNCALAELVGDVTTESPDWLLIRELLSGRTESDLQRAREALTQLFGVGAGAQRPNRTQRVALIGLRGAGKSTLGQMLADDLGYPFVELNREIERVAGCSILEIHNLYGPNAYRRYERRALEEAVQIYPEMVLATPGGLVSEPATLNLLLAHCYTVWLRATPEEHMGRVMAQGDFRPMSGNNEAMADLKRILAGREAFYEKADLTWVTSNLEVQESFAGLRTQVRKACGLPL
>CP034689.1|AZS81119.1|5114495_5114972_+|DUF4863-family-protein
MSTPDQFHALMREATRLVANQPLDDGLQAMLNREAGPDSALYQNIFAACRQGVADGWMCNREGGGIRYGRVIKPAEDLAGCSVDVVDMDDLAGPHHAHPNGEIDLIMPLTTDARFDGHGAGWLVYGPGSAHSPTVTQGRALVLYLLPGGAIEFTRPGG
>CP034689.1|AZS81120.1|5115048_5116668_+|benzoate-CoA-ligase-family-protein
MNTCPAELNFASHLAALNAARAAKPAYIDDSRQLSYGELAERVARMAGALRQLGLRREERILLLMQDTVDWPVAFLGALHAGVVPVAVNTLLTPDDYAYIITHSRVRAAFVSGALLPALQAALAQSPGDVEHVVVSQPNTAQFNTAQPNTAQPNPAHPTSALPAAVQDFDALLAAAPLAPAVRTLSDEIAFWLYSSGSTGKPKGVVHTHGNLWHTAELYAKPVLGIREDDVVFSAAKLFFAYGLGNGLTFPLSVGATVILMGERPTPQAVFQRLTRHRPTVFYGVPTLYASMLASPDLPPREQVAMRVCTSAGEALPRDIGERFTRHFGCEILDGIGSTEMLHIFISNQSGQIRYGTTGKPVPGYEVQLRDDSGAPVAAGTIGDLYIKGPSAALMYWNNRDKTRQCFLGDWLKSGDKYTCDADGYYTYAGRSDDMIKVSGQYVSPVEVENVLVQHEAVLEAAVIGVPDHDGLVKTKAYVVLRPGFEPDAQTGAALQSYVKQHLAPFKYPRQINFTEELPKTATGKIQRFRLRQLEEATL
>CP034689.1|AZS81121.1|5116749_5117910_+|ABC-transporter-permease
MNHALTRAAIAAALTFAASGAQAADKIKVGFMLPYSGTYAALGNAIENGFKLYVAEQGGKLGGREIEYFKVDDESNPAKAAENANRLIKRDQVDMLIGTVHSGVAMALAKAAKDSDTTLIVTNAGANAITGPLCGPGIFRTSFTNWQPAYAMGPVAYAKGHKTAVTITWKYAAGDEAIGGFKEGFEKAGGKVVKELSLPFPNVEFQSLLTEIAATKPDMVFTFFAGGGAVKFVQDYHAAGLDKTIPLYGSGFLTDGTLQAQGASAQGLLTTLHYADGLNTPRDNAFRADYAKHYKVQPDVYAVQGYDAAQLMQSGLSAVKGDFTKKADFRQAMRSATVDSPRGPFTLSAAGNPVQDIYLRQVDGLENKVVEVAAKKLADPARGCKL
>CP034689.1|AZS81122.1|5117935_5118817_+|branched-chain-amino-acid-ABC-transporter-permease
MDISILLIQSLNAFQYGLLLFLVASGLTLIFGIMGIINLAHGSFYMIGAYMAFALGPVLDRWLGGGFIATLAVCVLLAGVLGYVLEAAFFSYLYHRNHLQQVLMTYGLILVFEELRSILVGNDVHGVPLPAWLQGSISLGGVMTYPVYRLFISAVGIAVALLLYWVISRTRLGMMLRAGASNREMTASLGIDVNKLYRLVFAAGVALAALAGTIAAPVSSVYPGMGNGVLIICFVVVVIGGIGSIRGAFLAAMLVGFVETFGQVLFPSAAGVLVYLLMAFILLCKPEGLFKQG
>CP034689.1|AZS81123.1|5118819_5119881_+|branched-chain-amino-acid-ABC-transporter-permease
MQKLLPIATLLALAAFAVSGSDYYTGLAVKVMIYAIFALSLQLLVGGAGLVSLGHAAFFGIGAYAAALLSPESQAGNLWWLLPAALLAAAAYALVTGALALRTRGVYFIMVTLAFAQMAYYVFHDTDFGGGSDGIYLYFRPELLVGGWMPFDLGNATTFYFFVLACLALSWGFLALLRRSPFGAALAGIRINEQRMRAAGYSTYPYKLTAYVVGATLASLAGFLFALKDGFVTPELLAWEQSGLVLLMVILGGMGSLGGAVIGTVTLVLMQELFQSQALFGDYARHWHLPLGIAIIALVALLPNGIAGLPAQWRQRRDRREARAHAASGASTLAPSGPARPAPRLPIQEERHV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1966702 : 2001688

Pseudomonas_phage(16.67%)

portal,head,integrase,tail,protease,capsid,terminase

attL 1968212:1968258|attR 2009728:2009774

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS78558.1\|1966702_1967383_+	Fe2+-dependent dioxygenase	Q5GQB0	Synechococcus_phage	9.0e-19	27.3
AZS78559.1\|1967740_1968013_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	1.1e-20	57.8
1968212:1968258	attL	NA	NA	NA	NA
AZS78560.1\|1968429_1969545_+\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	1.6e-20	27.4
AZS78561.1\|1969839_1971186_-	hypothetical protein	A0A291L9X3	Bordetella_phage	2.9e-37	46.8
AZS78562.1\|1971182_1971506_-	hypothetical protein	NA	NA	NA	NA
AZS78563.1\|1971512_1971794_-	DUF4884 domain-containing protein	NA	NA	NA	NA
AZS82534.1\|1971781_1972150_-	hypothetical protein	A0A248SL53	Klebsiella_phage	7.8e-17	42.9
AZS78564.1\|1972320_1972839_-	hypothetical protein	A0A2H4J7V6	uncultured_Caudovirales_phage	4.6e-07	40.5
AZS78565.1\|1972922_1973597_+	hypothetical protein	NA	NA	NA	NA
AZS78566.1\|1973645_1974422_-	ParB/RepB/Spo0J family partition protein	C7BGF1	Burkholderia_phage	1.8e-84	64.2
AZS78567.1\|1974438_1975338_-	recombination-associated protein RdgC	B5AX95	Iodobacteriophage	4.8e-36	32.7
AZS78568.1\|1975493_1975727_-	hypothetical protein	NA	NA	NA	NA
AZS78569.1\|1975723_1976263_-	hypothetical protein	W8VMA8	Pseudomonas_phage	8.7e-09	28.1
AZS78570.1\|1976952_1977642_+	hypothetical protein	NA	NA	NA	NA
AZS82535.1\|1978087_1978687_-	S24 family peptidase	NA	NA	NA	NA
AZS78571.1\|1979254_1979527_+	hypothetical protein	NA	NA	NA	NA
AZS78572.1\|1979728_1980244_+	hypothetical protein	B7SYH6	Stenotrophomonas_phage	5.6e-29	40.5
AZS78573.1\|1980237_1980543_+	hypothetical protein	A0A1J0GUZ1	Halomonas_phage	3.0e-06	36.7
AZS78574.1\|1980535_1980841_+	hypothetical protein	NA	NA	NA	NA
AZS78575.1\|1980831_1981332_+	DUF1364 family protein	NA	NA	NA	NA
AZS78576.1\|1981328_1982153_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	2.9e-27	62.9
AZS78577.1\|1982149_1983514_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	3.0e-74	41.3
AZS78578.1\|1983723_1984137_+	hypothetical protein	NA	NA	NA	NA
AZS78579.1\|1984136_1984778_+	hypothetical protein	NA	NA	NA	NA
AZS78580.1\|1985243_1985828_+	DUF4065 domain-containing protein	NA	NA	NA	NA
AZS78581.1\|1986555_1986936_+	HNH endonuclease	A0A0R6PJG8	Moraxella_phage	4.8e-22	51.8
AZS78582.1\|1987145_1987628_+\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	3.0e-53	62.0
AZS78583.1\|1987631_1989356_+\|terminase	terminase large subunit	A4JWZ7	Burkholderia_virus	2.1e-274	80.1
AZS78584.1\|1989509_1990739_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.7e-156	66.9
AZS78585.1\|1990747_1991374_+\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	1.1e-63	64.5
AZS78586.1\|1991385_1992609_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.5e-138	62.4
AZS78587.1\|1992650_1992971_+\|head,tail	phage gp6-like head-tail connector protein	A0A1J0GUX7	Halomonas_phage	7.7e-13	40.9
AZS78588.1\|1992979_1993312_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AZS78589.1\|1993315_1993810_+	HK97 gp10 family phage protein	NA	NA	NA	NA
AZS78590.1\|1993802_1994156_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AZS78591.1\|1994152_1994593_+	hypothetical protein	NA	NA	NA	NA
AZS78592.1\|1994697_1995348_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	9.1e-61	54.9
AZS78593.1\|1995421_1995739_+	hypothetical protein	A0A0S2SYT8	Pseudomonas_phage	9.9e-21	42.9
AZS78594.1\|1995735_1996047_+	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	2.0e-13	44.0
AZS78595.1\|1996081_2001688_+\|tail	phage tail protein	A0A1V0E8B0	Vibrio_phage	5.1e-67	42.1
2009728:2009774	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2176698 : 2238960

Vibrio_phage(13.33%)

tRNA,transposase,integrase,protease,terminase

attL 2168886:2168904|attR 2204382:2204400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2168886:2168904	attL	NA	NA	NA	NA
AZS78732.1\|2176698_2177985_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
AZS78733.1\|2177988_2178627_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AZS78734.1\|2178632_2179790_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
AZS78735.1\|2179815_2181168_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
AZS78736.1\|2181171_2182245_+	histidinol-phosphate transaminase	NA	NA	NA	NA
AZS78737.1\|2182402_2182639_+	RNA-binding protein Hfq	NA	NA	NA	NA
AZS78738.1\|2182723_2183830_+	GTPase HflX	NA	NA	NA	NA
AZS78739.1\|2183795_2185100_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
AZS78740.1\|2185118_2186024_+\|protease	protease modulator HflC	NA	NA	NA	NA
AZS78741.1\|2186289_2187447_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
AZS78742.1\|2187511_2188819_+	adenylosuccinate synthase	A0A0B5J049	Pandoravirus	6.9e-60	31.8
AZS78743.1\|2188900_2189443_+	phosphoribosyltransferase	NA	NA	NA	NA
AZS78744.1\|2189826_2190039_+	30S ribosomal protein S21	NA	NA	NA	NA
AZS78745.1\|2190058_2192119_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.0e-65	42.6
AZS78746.1\|2192851_2195131_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.2e-36	30.1
AZS82547.1\|2195245_2195794_-\|integrase	site-specific integrase	NA	NA	NA	NA
AZS78747.1\|2195951_2197063_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.5e-42	41.1
AZS78748.1\|2197208_2197622_+	hypothetical protein	NA	NA	NA	NA
AZS78749.1\|2197632_2199414_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AZS78750.1\|2199470_2199779_+	hypothetical protein	NA	NA	NA	NA
AZS78751.1\|2199780_2200059_+	hypothetical protein	NA	NA	NA	NA
AZS78752.1\|2200055_2200556_+	hypothetical protein	I6NSS1	Burkholderia_phage	1.8e-40	54.9
AZS78753.1\|2200552_2200972_+	hypothetical protein	NA	NA	NA	NA
AZS78754.1\|2201077_2201296_-	hypothetical protein	NA	NA	NA	NA
AZS78755.1\|2201766_2201931_-	2'-5' RNA ligase	NA	NA	NA	NA
AZS78756.1\|2202757_2203726_-\|integrase	integrase	A0A2H4J8E5	uncultured_Caudovirales_phage	5.3e-65	43.2
AZS78757.1\|2203652_2203883_-	DUF4224 domain-containing protein	NA	NA	NA	NA
AZS78758.1\|2203965_2204304_-	hypothetical protein	A0A0H5ARN8	Pseudomonas_phage	3.4e-11	40.5
AZS78759.1\|2204290_2204473_-	hypothetical protein	NA	NA	NA	NA
2204382:2204400	attR	NA	NA	NA	NA
AZS78760.1\|2204469_2205180_-	hypothetical protein	A0A1I9KFE6	Aeromonas_phage	1.6e-10	68.2
AZS78761.1\|2205172_2205778_-	hypothetical protein	NA	NA	NA	NA
AZS78762.1\|2205774_2206863_-	hypothetical protein	A1YZU8	Burkholderia_virus	2.3e-08	44.7
AZS78763.1\|2207070_2207448_-	hypothetical protein	NA	NA	NA	NA
AZS78764.1\|2207674_2208169_-	siphovirus Gp157 family protein	Q9T0Y7	Lactobacillus_phage	1.2e-09	28.7
AZS78765.1\|2208177_2208795_-	hypothetical protein	NA	NA	NA	NA
AZS78766.1\|2208800_2209247_-	hypothetical protein	Q9MC50	Pseudomonas_phage	2.0e-27	43.3
AZS78767.1\|2209407_2210058_-	ATP-binding protein	A0A059VF62	Pseudomonas_phage	1.8e-48	47.2
AZS78768.1\|2210327_2210819_-	HNH endonuclease	Q2NPG0	Xanthomonas_virus	6.5e-35	48.7
AZS78769.1\|2210833_2211163_-	hypothetical protein	NA	NA	NA	NA
AZS78770.1\|2211146_2211578_-	hypothetical protein	NA	NA	NA	NA
AZS78771.1\|2211574_2211796_-	hypothetical protein	NA	NA	NA	NA
AZS78772.1\|2212074_2212362_-	hypothetical protein	NA	NA	NA	NA
AZS78773.1\|2212404_2212740_-	hypothetical protein	NA	NA	NA	NA
AZS78774.1\|2212799_2213222_-	hypothetical protein	NA	NA	NA	NA
AZS78775.1\|2213392_2213719_-	hypothetical protein	C9DGI1	Deftia_phage	3.1e-17	49.5
AZS78776.1\|2214129_2214594_-	hypothetical protein	NA	NA	NA	NA
AZS78777.1\|2215296_2215548_+	hypothetical protein	NA	NA	NA	NA
AZS78778.1\|2216159_2216468_+	DNA-binding protein	A0A1S5NNI6	Burkholderia_phage	2.7e-15	50.0
AZS78779.1\|2216469_2216883_+	hypothetical protein	A0A1B0VMG4	Pseudomonas_phage	4.6e-18	46.7
AZS78780.1\|2216879_2217224_+	hypothetical protein	NA	NA	NA	NA
AZS78781.1\|2217220_2217940_+	DUF1376 domain-containing protein	A0A2I7RGZ2	Vibrio_phage	5.8e-08	32.2
AZS78782.1\|2217936_2218299_+	hypothetical protein	NA	NA	NA	NA
AZS82548.1\|2218313_2219240_+	hypothetical protein	A0A2R4ALE6	Vibrio_phage	3.4e-53	41.2
AZS78783.1\|2219242_2219608_+	hypothetical protein	NA	NA	NA	NA
AZS82549.1\|2219832_2220240_+	hypothetical protein	R9ZZU8	Cellulophaga_phage	2.3e-30	60.6
AZS78784.1\|2220534_2220921_+	hypothetical protein	NA	NA	NA	NA
AZS78785.1\|2221400_2221688_+	hypothetical protein	NA	NA	NA	NA
AZS78786.1\|2221684_2222914_+\|terminase	PBSX family phage terminase large subunit	L7TKU1	Rhizobium_phage	1.3e-111	48.1
AZS78787.1\|2222916_2225070_+	hypothetical protein	A0A0E3GMB1	Rhodoferax_phage	3.9e-92	36.8
AZS78788.1\|2225120_2225846_+	hypothetical protein	NA	NA	NA	NA
AZS78789.1\|2225855_2227097_+	hypothetical protein	A0A1B1IR95	uncultured_Mediterranean_phage	1.1e-75	40.5
AZS78790.1\|2227154_2227394_+	hypothetical protein	NA	NA	NA	NA
AZS78791.1\|2227377_2228073_+	hypothetical protein	NA	NA	NA	NA
AZS78792.1\|2228069_2229506_+	hypothetical protein	A0A0E3JSB2	Rhodoferax_phage	3.3e-111	46.4
AZS78793.1\|2229505_2229874_+	hypothetical protein	U6C692	Ralstonia_phage	3.3e-07	46.5
AZS78794.1\|2229887_2230490_+	aspartyl beta-hydroxylase	NA	NA	NA	NA
AZS78795.1\|2230492_2230948_+	hypothetical protein	A0A2I7S0B0	Vibrio_phage	1.9e-12	29.9
AZS78796.1\|2231003_2232026_+	hypothetical protein	A0A0E3GMA9	Rhodoferax_phage	1.4e-07	40.6
AZS78797.1\|2232037_2233348_+	hypothetical protein	A0A0E3JI98	Rhodoferax_phage	1.4e-20	29.3
AZS78798.1\|2233350_2235900_+	hypothetical protein	H9C1A7	Pectobacterium_phage	1.0e-35	57.0
AZS78799.1\|2236035_2237457_+	hypothetical protein	A0A0K0KWC8	Prochlorococcus_phage	1.1e-31	34.0
AZS78800.1\|2237621_2238326_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
AZS78801.1\|2238405_2238687_+	hypothetical protein	NA	NA	NA	NA
AZS78802.1\|2238696_2238960_+	hypothetical protein	W6AQP4	Acinetobacter_phage	3.7e-05	27.3

DBSCAN-SWA_3

2257303 : 2278273

uncultured_Caudovirales_phage(61.54%)

tail,integrase

attL 2272714:2272728|attR 2282828:2282842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS78836.1\|2257303_2258932_+\|tail	phage tail protein	A0A2H4J3N6	uncultured_Caudovirales_phage	2.6e-157	56.0
AZS78837.1\|2258928_2259162_+	hypothetical protein	NA	NA	NA	NA
AZS78838.1\|2259165_2260062_+	hypothetical protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	6.7e-30	35.8
AZS78839.1\|2260248_2261130_+	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	9.5e-53	45.5
AZS78840.1\|2261157_2261616_+	hypothetical protein	NA	NA	NA	NA
AZS78841.1\|2261698_2262280_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	7.6e-43	45.9
AZS78842.1\|2262279_2264457_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	2.3e-172	44.2
AZS78843.1\|2264453_2265374_+	GNAT family N-acetyltransferase	M1E3T3	Enterobacteria_phage	1.6e-10	33.3
AZS78844.1\|2265373_2267371_+	hypothetical protein	NA	NA	NA	NA
AZS78845.1\|2267483_2269274_+	hypothetical protein	Q6J1R1	Burkholderia_virus	1.6e-19	37.0
AZS78846.1\|2269283_2271764_+	hypothetical protein	Q6J1R0	Burkholderia_virus	1.2e-158	38.0
AZS78847.1\|2271763_2272129_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	4.7e-14	38.8
AZS78848.1\|2272125_2273781_+	transcriptional regulator	A0A2H4JCA3	uncultured_Caudovirales_phage	9.2e-150	50.8
2272714:2272728	attL	NA	NA	NA	NA
AZS78849.1\|2273820_2275044_+	hypothetical protein	Q8HA60	Vibrio_phage	1.2e-18	51.5
AZS78850.1\|2275043_2275466_+	hypothetical protein	NA	NA	NA	NA
AZS78851.1\|2275462_2275795_+	hypothetical protein	NA	NA	NA	NA
AZS78852.1\|2275791_2276010_+	hypothetical protein	NA	NA	NA	NA
AZS82553.1\|2275993_2276497_+	lysozyme	Q3HQU9	Burkholderia_phage	8.9e-56	66.2
AZS78853.1\|2276493_2276970_+	hypothetical protein	NA	NA	NA	NA
AZS78854.1\|2276980_2278273_-\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	2.5e-54	34.5
2282828:2282842	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3303178 : 3309967

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS79633.1\|3303178_3304459_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	4.4e-168	72.5
AZS79634.1\|3304471_3304978_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.7e-27	41.7
AZS79635.1\|3305140_3305467_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AZS79636.1\|3305463_3306594_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	2.6e-87	56.5
AZS79637.1\|3306603_3307029_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.6e-50	69.3
AZS79638.1\|3307037_3308285_+	MFS transporter	NA	NA	NA	NA
AZS82621.1\|3308365_3309076_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-92	75.3
AZS79639.1\|3309151_3309967_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.8e-21	32.7

DBSCAN-SWA_5

4557145 : 4621689

Pseudomonas_phage(26.67%)

portal,head,integrase,tail,protease,capsid,terminase

attL 4556399:4556415|attR 4618794:4618810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4556399:4556415	attL	NA	NA	NA	NA
AZS80663.1\|4557145_4558666_-\|tail	tail fiber protein	A0A0B5A596	Achromobacter_phage	6.8e-59	58.8
AZS80664.1\|4558667_4559558_-	hypothetical protein	NA	NA	NA	NA
AZS80665.1\|4559554_4565158_-\|tail	phage tail protein	A0A1V1FCQ8	Vibrio_phage	8.7e-67	43.2
AZS80666.1\|4565194_4565506_-	hypothetical protein	NA	NA	NA	NA
AZS80667.1\|4565502_4565820_-	hypothetical protein	A0A0S2SYT8	Pseudomonas_phage	2.6e-21	43.8
AZS80668.1\|4565893_4566544_-\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	2.6e-60	54.4
AZS80669.1\|4566648_4567089_-	hypothetical protein	NA	NA	NA	NA
AZS80670.1\|4567085_4567439_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AZS80671.1\|4567431_4567926_-	HK97 gp10 family phage protein	NA	NA	NA	NA
AZS80672.1\|4567922_4568261_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AZS80673.1\|4568257_4568677_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AZS80674.1\|4568679_4569027_-	hypothetical protein	NA	NA	NA	NA
AZS80675.1\|4569090_4570329_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	2.6e-101	49.5
AZS80676.1\|4570397_4571138_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	1.1e-57	59.1
AZS80677.1\|4571103_4572444_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	1.3e-56	37.0
AZS80678.1\|4572443_4574144_-\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	2.0e-200	60.9
AZS80679.1\|4574190_4574511_-	hypothetical protein	Q2NPI9	Xanthomonas_virus	1.8e-06	44.7
AZS80680.1\|4574864_4575197_-	HNH endonuclease	NA	NA	NA	NA
AZS80681.1\|4575390_4575576_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	9.0e-06	45.9
AZS80682.1\|4575645_4576059_+	type II toxin-antitoxin system HicB family antitoxin	A0A2H4JFV9	uncultured_Caudovirales_phage	1.3e-20	43.1
AZS80683.1\|4576072_4576435_+	response regulator transcription factor	NA	NA	NA	NA
AZS80684.1\|4576468_4577239_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	1.7e-111	73.8
AZS80685.1\|4577473_4578565_-	(p)ppGpp synthetase	NA	NA	NA	NA
AZS80686.1\|4578703_4579297_-	hypothetical protein	NA	NA	NA	NA
AZS80687.1\|4579293_4579665_-	hypothetical protein	NA	NA	NA	NA
AZS80688.1\|4579675_4580038_-	hypothetical protein	R9TNL4	Vibrio_phage	1.7e-24	53.1
AZS80689.1\|4580073_4580268_-	hypothetical protein	NA	NA	NA	NA
AZS80690.1\|4580506_4581370_-	hypothetical protein	A0A0U2BXL1	Paracoccus_phage	3.8e-14	33.5
AZS80691.1\|4582902_4583823_-	hypothetical protein	A0A0E3GMA4	Rhodoferax_phage	5.1e-09	38.5
AZS80692.1\|4584033_4584240_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZS80693.1\|4584313_4585375_+	LexA family transcriptional regulator	A0A0R6PHL1	Moraxella_phage	1.2e-06	46.7
AZS80694.1\|4585591_4585933_+	hypothetical protein	NA	NA	NA	NA
AZS80695.1\|4585929_4586706_+	hypothetical protein	NA	NA	NA	NA
AZS80696.1\|4586753_4586960_-	hypothetical protein	NA	NA	NA	NA
AZS80697.1\|4586958_4587237_+	hypothetical protein	NA	NA	NA	NA
AZS80698.1\|4587233_4587728_+	hypothetical protein	NA	NA	NA	NA
AZS80699.1\|4587724_4588888_+	hypothetical protein	NA	NA	NA	NA
AZS80700.1\|4588945_4589257_+	hypothetical protein	A0A0A7NV51	Enterobacteria_phage	4.1e-11	60.0
AZS80701.1\|4589073_4589532_+	DUF4884 domain-containing protein	NA	NA	NA	NA
AZS82712.1\|4591315_4593916_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.1e-23	20.6
AZS80702.1\|4593912_4595106_+	cupin domain-containing protein	NA	NA	NA	NA
AZS80703.1\|4595324_4595537_+	endopeptidase	NA	NA	NA	NA
AZS82713.1\|4595708_4596839_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
AZS80704.1\|4597841_4598489_-\|protease	site-2 protease family protein	NA	NA	NA	NA
AZS80705.1\|4598561_4599188_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AZS80706.1\|4599274_4600126_+	hypothetical protein	A0A1I9SA48	Rhodococcus_phage	2.7e-36	35.4
AZS80707.1\|4600310_4600847_+	hypothetical protein	NA	NA	NA	NA
AZS80708.1\|4600843_4601608_+	DUF1828 domain-containing protein	NA	NA	NA	NA
AZS80709.1\|4601604_4601877_-	hypothetical protein	NA	NA	NA	NA
AZS80710.1\|4602107_4602764_-	N-acetyltransferase	NA	NA	NA	NA
AZS80711.1\|4602944_4603682_-	transcriptional regulator	NA	NA	NA	NA
AZS80712.1\|4605019_4605214_-	hypothetical protein	NA	NA	NA	NA
AZS80713.1\|4605867_4606914_+	DUF4105 domain-containing protein	NA	NA	NA	NA
AZS80714.1\|4606915_4607386_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
AZS80715.1\|4607610_4607877_-	hypothetical protein	NA	NA	NA	NA
AZS80716.1\|4607860_4608355_-	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	2.5e-50	63.7
AZS80717.1\|4608344_4608809_-	hypothetical protein	A0A0A1IVG1	Pseudomonas_phage	1.2e-09	35.3
AZS82714.1\|4608938_4609961_+\|integrase	site-specific integrase	A0A2H4JE37	uncultured_Caudovirales_phage	3.1e-23	30.9
AZS80718.1\|4609964_4610321_-\|tail	phage tail protein	NA	NA	NA	NA
AZS80719.1\|4612175_4612841_-	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.9e-29	35.6
AZS80720.1\|4612840_4614292_-	hypothetical protein	A0A0N9SH53	Pseudomonas_phage	2.0e-71	34.2
AZS80721.1\|4614326_4614731_-	hypothetical protein	E5AGC2	Erwinia_phage	2.2e-12	41.1
AZS80722.1\|4614730_4615426_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.9e-12	32.6
AZS80723.1\|4615422_4616364_-	hypothetical protein	NA	NA	NA	NA
AZS80724.1\|4616350_4616683_-	hypothetical protein	A0A0N9SG14	Pseudomonas_phage	2.6e-11	38.1
AZS80725.1\|4616679_4617267_-	hypothetical protein	I3PGV3	Xanthomonas_phage	8.9e-07	27.5
AZS80726.1\|4617275_4619258_-	hypothetical protein	A0A0P0ZCJ4	Stx2-converting_phage	4.3e-21	30.1
4618794:4618810	attR	NA	NA	NA	NA
AZS80727.1\|4619403_4619889_-	hypothetical protein	NA	NA	NA	NA
AZS80728.1\|4619888_4620317_-	DUF3277 family protein	NA	NA	NA	NA
AZS80729.1\|4620330_4621689_-	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	7.4e-81	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034689

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection