CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034715	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE13 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	1	16	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034715_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034715_3

940273-941153

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
NGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas3,cas8e,cse2gr11,cas5

The CRISPR arrays of CP034715_3

>merge|CP034715|3|940273-941153|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGCCTGGTACGCATGGTGGCAGAAGAACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCATATTCAGGCTTCAAACCACAGGTCGGACATGTGTTCCCCGCGCAGCGGGGATAAACCGTTGATGTCATGTCGTGTACAGACGCTGCGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATGGGGGTTCAGGCTGATGACAATGAAGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATAACGAGCCCGTTTCTGGTGGGGATGTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCATCCAGCCCGGAAATGTCGGCCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGCACTTAGTTAAGGCGATCTTAAATTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTTTTGATCATCTCCTCCAGCCTGCTGAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGCGGGCCTCTCTCTCTGTTTGAGCTGTTACGTGTTCCCCGCGCTAGCGGGGATAAACCGGTTAATTTGTTTTTGTGGGGAATTATTGTTGGGTGTTCCCCGCGCTAGCGGGGATAAACCGCCATAAGAGCATCCCCGCTATCCGGAGGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATGCGATCGGTACTCAACCCGGCCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCGGTTTCGGTGGGGCTGAATCCTGAACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP034715|3|1|940273-941092|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGCCTGGTACGCATGGTGGCAGAAGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATTCAGGCTTCAAACCACAGGTCGGACAT
GTGTTCCCCGCGCAGCGGGGATAAACCGT	TGATGTCATGTCGTGTACAGACGCTGCGTCAG
TGTTCCCCGCGCCAGCGGGGATAAACCGG	CATGGGGGTTCAGGCTGATGACAATGAAGGGG
TGTTCCCCGCGCCAGCGGGGATAAACCGA	TAACGAGCCCGTTTCTGGTGGGGATGTTAATG
TGTTCCCCGCGCCAGCGGGGATAAACCGA	AATCATCCAGCCCGGAAATGTCGGCCTCATCG
TGTTCCCCGCGCCAGCGGGGATAAACCGC	GGAGCACTTAGTTAAGGCGATCTTAAATTTGG
TGTTCCCCGCGCCAGCGGGGATAAACCGC	CATTTTTGATCATCTCCTCCAGCCTGCTGAGG
TGTTCCCCGCGCTAGCGGGGATAAACCGC	GGCGGGCCTCTCTCTCTGTTTGAGCTGTTACG
TGTTCCCCGCGCTAGCGGGGATAAACCGG	TTAATTTGTTTTTGTGGGGAATTATTGTTGGG
TGTTCCCCGCGCTAGCGGGGATAAACCGC	CATAAGAGCATCCCCGCTATCCGGAGGGGAAG
TGTTCCCCGCGCCAGCGGGGATAAACCGA	AAAAATGCGATCGGTACTCAACCCGGCCACG
TGTTCCCCGCGCCAGCGGGGATAAACCGC	GCCGGTTTCGGTGGGGCTGAATCCTGAACCGG
TGTTCCCCGCGCCAGCGGGGATAAACCG

>CP034715|3|3|940273-941153|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGCCTGGTACGCATGGTGGCAGAAGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATTCAGGCTTCAAACCACAGGTCGGACA
TGTGTTCCCCGCGCAGCGGGGATAAACCG	TTGATGTCATGTCGTGTACAGACGCTGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGGGGGTTCAGGCTGATGACAATGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAACGAGCCCGTTTCTGGTGGGGATGTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCATCCAGCCCGGAAATGTCGGCCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGCACTTAGTTAAGGCGATCTTAAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGGGCCTCTCTCTCTGTTTGAGCTGTTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTTAATTTGTTTTTGTGGGGAATTATTGTTGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCATAAGAGCATCCCCGCTATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATGCGATCGGTACTCAACCCGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCGGTTTCGGTGGGGCTGAATCCTGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP034715|3|1|940273-941153|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGCCTGGTACGCATGGTGGCAGAAGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATTCAGGCTTCAAACCACAGGTCGGACA
TGTGTTCCCCGCGCAGCGGGGATAAACCG	TTGATGTCATGTCGTGTACAGACGCTGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGGGGGTTCAGGCTGATGACAATGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAACGAGCCCGTTTCTGGTGGGGATGTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCATCCAGCCCGGAAATGTCGGCCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGCACTTAGTTAAGGCGATCTTAAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGGGCCTCTCTCTCTGTTTGAGCTGTTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTTAATTTGTTTTTGTGGGGAATTATTGTTGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCATAAGAGCATCCCCGCTATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATGCGATCGGTACTCAACCCGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCGGTTTCGGTGGGGCTGAATCCTGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP034715.1\|AZS98434.1\|935121_935922_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP034715.1\|AZS98435.1\|936149_937787_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
CP034715.1\|AZS98429.1\|927643_928762_-\|hypothetical-protein	unknown	unknown	unknown
CP034715.1\|AZS98447.1\|954728_955475_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP034715.1\|AZS98436.1\|937869_939168_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP034715.1\|AZS98438.1\|942138_942501_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP034715.1\|AZS98432.1\|930363_931137_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP034715.1\|AZS98428.1\|926208_927294_-\|hypothetical-protein	unknown	unknown	unknown
CP034715.1\|AZS98430.1\|928820_929357_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP034715.1\|AZS98441.1\|944735_946448_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP034715.1\|AZS98437.1\|939304_939976_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP034715.1\|AZS98445.1\|951542_953102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP034715.1\|AZS98442.1\|946523_947258_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP034715.1\|AZS98444.1\|948867_951531_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP034715.1\|AZS98431.1\|929353_929824_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP034715.1\|AZS98446.1\|953098_953647_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP034715.1\|AZS98443.1\|947470_948424_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP034715.1\|AZS98440.1\|942936_944736_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP034715.1\|AZS98433.1\|933928_934516_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP034715.1\|AZS98439.1\|942429_942600_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034715.1\|AZS98434.1\|935121_935922_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.32088e-156
CP034715.1\|AZS98435.1\|936149_937787_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP034715.1\|AZS98447.1\|954728_955475_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.23317e-48
CP034715.1\|AZS98436.1\|937869_939168_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP034715.1\|AZS98438.1\|942138_942501_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP034715.1\|AZS98432.1\|930363_931137_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	3.2242e-179
CP034715.1\|AZS98440.1\|942936_944736_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP034715.1\|AZS98430.1\|928820_929357_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	6.31584e-118
CP034715.1\|AZS98433.1\|933928_934516_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP034715.1\|AZS98442.1\|946523_947258_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.65911e-139
CP034715.1\|AZS98444.1\|948867_951531_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP034715.1\|AZS98431.1\|929353_929824_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	3.24637e-99
CP034715.1\|AZS98443.1\|947470_948424_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP034715.1\|AZS98437.1\|939304_939976_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.23698e-155
CP034715.1\|AZS98445.1\|951542_953102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	3.89095e-172
CP034715.1\|AZS98441.1\|944735_946448_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP034715.1\|AZS98446.1\|953098_953647_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	6.24845e-32

>CP034715.1|AZS98437.1|939304_939976_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP034715.1|AZS98436.1|937869_939168_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP034715.1|AZS98435.1|936149_937787_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP034715.1|AZS98434.1|935121_935922_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCSWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP034715.1|AZS98433.1|933928_934516_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP034715.1|AZS98432.1|930363_931137_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKGNETASGFKNLLIAPREKVTSPIKGASLGSSPVVSYVDDYGGHRLLVFTCSGNTCKVNDEKTRDAEKKANK
>CP034715.1|AZS98431.1|929353_929824_-|fimbrial-protein
MKRALILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP034715.1|AZS98430.1|928820_929357_-|fimbrial-protein-SteF
MNRIFQTTGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDANGQTTPVPFTLSLKDCKTALANGVVVTFQGVEDSTLSGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGENIMPGEFNASAMVNFEYQ
>CP034715.1|AZS98429.1|927643_928762_-|hypothetical-protein
MEIKKSILVRKNIRLSGIIIDMLILTILLISTFDAVSDSSPVKASAINIALQGTPNTDYELNGDLRSNGGIMPKTLYMVCSGGKFSASQADCVAGQWVDIEVVISADSHTFMNLTNMGNLSSSAFQEKRRARCTAKNSNTMDCIWESNFDINLFFSPSTNISSIERQSLTLHIEPTNNASPSLQQINISGDLIYQPSDYAVYNQGYTPDVLAYVNFYAKYNIVQSSFGTQTGPATGALPGRLNLNGNVATTVSLYPEQLDASFSKTEFSITSASKEFTGSGNNELLAEIYLNYGLQHCQSQTADSICGQILANANVSTSCGDHNITITTNMCNTGNGQCDGDKTWKIAEIFGTWGRVNVDTICAITVLLPYE
>CP034715.1|AZS98428.1|926208_927294_-|hypothetical-protein
MCTNFLKTSLLITSTFWCIALQCAEVRTDIKYNSQIISQFDSISALAGDPTFDTIHTPLPTNIHILSSCTKSGGSGGGGGCIPGTLPYGLQSTLEFDPSTSFINTTAVDNGITYSFTGEAVKATAHASCTANQATNSAICVWDKSFSLPLTLLTKQNGITINQQNLTVSVIPGGGNNDTNQYSSLSGHIIIDESVSSYTNYEPETSGIENLKLKWTVTVTEDTEGDVGIWNGSLVLNGSPASTLHRYLLPEILDASFSENAIAHSTEVAMTGAKNNVELASVYLYHGNTPCDDTSLCNYSLNKTSVSLVCHDLNAQLNFSNTCNASGTKHCLNGKVGTIKGTWERVNIDTTCAITVLIPYE
>CP034715.1|AZS98438.1|942138_942501_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP034715.1|AZS98439.1|942429_942600_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP034715.1|AZS98440.1|942936_944736_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNGIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIGLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP034715.1|AZS98441.1|944735_946448_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITESEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP034715.1|AZS98442.1|946523_947258_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP034715.1|AZS98443.1|947470_948424_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWEKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP034715.1|AZS98444.1|948867_951531_+|CRISPR-associated-helicase-Cas3'
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVISNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLVDEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKNGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP034715.1|AZS98445.1|951542_953102_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFAAIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTDYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTEGRFLTLIHDLENGHKPDERLNKWQRELWLFTRRYFDDHVFTNPYESSDLKRIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP034715.1|AZS98446.1|953098_953647_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAAWHVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKRPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLSHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP034715.1|AZS98447.1|954728_955475_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALKLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE

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Crispr_ID: CP034715_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034715_4

957414-958056

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cse2gr11,cas8e,cas3

The CRISPR arrays of CP034715_4

>merge|CP034715|4|957414-958056|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGCCTGAATTGACTATAACCGAATCACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCTGATCGAATGGATTCGACTTTATAGGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCATACGTATTAGGTACCGGGCTGCCGATCGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTGCGGCAACGCCCGTTTTTATCGGTGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACTGGATATCAACCTGCCTGAGTTAAAGACCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGCCAGTTCGCCCGAACGGTGATCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTAAAACGGCGCTTGAGAACAGTATCAATATGTGTTCCCCGTGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP034715|4|2|957414-957995|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGCCTGAATTGACTATAACCGAATCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGATCGAATGGATTCGACTTTATAGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCATACGTATTAGGTACCGGGCTGCCGATCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACTGGATATCAACCTGCCTGAGTTAAAGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGCCAGTTCGCCCGAACGGTGATCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTAAAACGGCGCTTGAGAACAGTATCAATAT
GTGTTCCCCGTGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP034715|4|4|957414-958056|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGCCTGAATTGACTATAACCGAATCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGATCGAATGGATTCGACTTTATAGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCATACGTATTAGGTACCGGGCTGCCGATCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACTGGATATCAACCTGCCTGAGTTAAAGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGCCAGTTCGCCCGAACGGTGATCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTAAAACGGCGCTTGAGAACAGTATCAATAT
GTGTTCCCCGTGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP034715|4|2|957414-958056|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGCCTGAATTGACTATAACCGAATCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGATCGAATGGATTCGACTTTATAGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCATACGTATTAGGTACCGGGCTGCCGATCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACTGGATATCAACCTGCCTGAGTTAAAGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGCCAGTTCGCCCGAACGGTGATCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTAAAACGGCGCTTGAGAACAGTATCAATAT
GTGTTCCCCGTGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP034715.1\|AZS98449.1\|956103_957024_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP034715.1\|AZS98455.1\|962880_963192_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP034715.1\|AZS98459.1\|965426_966188_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP034715.1\|AZS98447.1\|954728_955475_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP034715.1\|AZS98450.1\|957023_957317_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
CP034715.1\|AZS98453.1\|960285_961725_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP034715.1\|AZS98448.1\|955456_956107_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP034715.1\|AZS98458.1\|964396_965446_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP034715.1\|AZS98454.1\|962333_962690_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP034715.1\|AZS98457.1\|963920_964400_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP034715.1\|AZS98441.1\|944735_946448_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP034715.1\|AZS98442.1\|946523_947258_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP034715.1\|AZS98444.1\|948867_951531_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP034715.1\|AZS98446.1\|953098_953647_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP034715.1\|AZS98456.1\|963210_963921_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP034715.1\|AZS98452.1\|959367_960276_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP034715.1\|AZS98443.1\|947470_948424_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP034715.1\|AZS98445.1\|951542_953102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP034715.1\|AZS98451.1\|958070_959117_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP034715.1\|AZS98460.1\|966982_968116_+\|murein-hydrolase-activator-NlpD	unknown	unknown	gnl\|CDD\|236782

Protein	Function_ID	Function_description	E-value
CP034715.1\|AZS98449.1\|956103_957024_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
CP034715.1\|AZS98455.1\|962880_963192_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP034715.1\|AZS98459.1\|965426_966188_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP034715.1\|AZS98447.1\|954728_955475_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.23317e-48
CP034715.1\|AZS98450.1\|957023_957317_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
CP034715.1\|AZS98453.1\|960285_961725_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP034715.1\|AZS98448.1\|955456_956107_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.33056e-75
CP034715.1\|AZS98458.1\|964396_965446_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP034715.1\|AZS98454.1\|962333_962690_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP034715.1\|AZS98457.1\|963920_964400_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP034715.1\|AZS98441.1\|944735_946448_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP034715.1\|AZS98442.1\|946523_947258_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.65911e-139
CP034715.1\|AZS98444.1\|948867_951531_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP034715.1\|AZS98446.1\|953098_953647_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	6.24845e-32
CP034715.1\|AZS98456.1\|963210_963921_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	5.3273e-119
CP034715.1\|AZS98452.1\|959367_960276_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP034715.1\|AZS98443.1\|947470_948424_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP034715.1\|AZS98445.1\|951542_953102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	3.89095e-172
CP034715.1\|AZS98451.1\|958070_959117_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP034715.1\|AZS98460.1\|966982_968116_+\|murein-hydrolase-activator-NlpD	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	0

>CP034715.1|AZS98450.1|957023_957317_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP034715.1|AZS98449.1|956103_957024_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP034715.1|AZS98448.1|955456_956107_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP034715.1|AZS98447.1|954728_955475_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALKLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP034715.1|AZS98446.1|953098_953647_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAAWHVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKRPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLSHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP034715.1|AZS98445.1|951542_953102_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFAAIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTDYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTEGRFLTLIHDLENGHKPDERLNKWQRELWLFTRRYFDDHVFTNPYESSDLKRIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP034715.1|AZS98444.1|948867_951531_+|CRISPR-associated-helicase-Cas3'
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVISNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLVDEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKNGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP034715.1|AZS98443.1|947470_948424_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWEKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP034715.1|AZS98442.1|946523_947258_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP034715.1|AZS98441.1|944735_946448_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITESEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP034715.1|AZS98451.1|958070_959117_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP034715.1|AZS98452.1|959367_960276_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP034715.1|AZS98453.1|960285_961725_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP034715.1|AZS98454.1|962333_962690_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP034715.1|AZS98455.1|962880_963192_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP034715.1|AZS98456.1|963210_963921_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP034715.1|AZS98457.1|963920_964400_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP034715.1|AZS98458.1|964396_965446_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP034715.1|AZS98459.1|965426_966188_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP034715.1|AZS98460.1|966982_968116_+|murein-hydrolase-activator-NlpD
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPVTQPMQTQPVAEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034715_1	1.1\|88507\|43\|CP034715\|CRISPRCasFinder	88507-88549	43	CP034715.1	88561-88603	2	0.953

1. spacer 1.1|88507|43|CP034715|CRISPRCasFinder matches to position: 88561-88603, mismatch: 2, identity: 0.953

tggatcagggtccaccggatcgggaataacagggtcagggata	CRISPR spacer
tggatcagggtctaccggatcgggaatgacagggtcagggata	Protospacer
************.**************.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034715_3	3.4\|940485\|32\|CP034715\|PILER-CR	940485-940516	32	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	28021-28052	2	0.938
CP034715_3	3.4\|940485\|32\|CP034715\|PILER-CR	940485-940516	32	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	33243-33274	2	0.938
CP034715_3	3.4\|940485\|32\|CP034715\|PILER-CR	940485-940516	32	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	7562-7593	2	0.938
CP034715_3	3.4\|940485\|32\|CP034715\|PILER-CR	940485-940516	32	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	18928-18959	2	0.938
CP034715_3	3.4\|940485\|32\|CP034715\|PILER-CR	940485-940516	32	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	19116-19147	2	0.938
CP034715_3	3.16\|940484\|32\|CP034715\|CRISPRCasFinder,CRT	940484-940515	32	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	28021-28052	2	0.938
CP034715_3	3.16\|940484\|32\|CP034715\|CRISPRCasFinder,CRT	940484-940515	32	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	33243-33274	2	0.938
CP034715_3	3.16\|940484\|32\|CP034715\|CRISPRCasFinder,CRT	940484-940515	32	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	7562-7593	2	0.938
CP034715_3	3.16\|940484\|32\|CP034715\|CRISPRCasFinder,CRT	940484-940515	32	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	18928-18959	2	0.938
CP034715_3	3.16\|940484\|32\|CP034715\|CRISPRCasFinder,CRT	940484-940515	32	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	19116-19147	2	0.938
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_KX960110	Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence	43761-43793	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_KU295131	Escherichia coli strain BK28009 plasmid pBK28009, complete sequence	54028-54060	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_CP026237	Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence	201401-201433	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_CP025944	Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence	85940-85972	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_CP021734	Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence	11997-12029	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	MN604267	Salmonella enterica subsp. enterica serovar London strain SAL-19-0623 plasmid pSAL-19-0623_NDM, complete sequence	161066-161098	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_MG870194	Salmonella enterica subsp. enterica serovar London strain Sa128 plasmid pSa128, complete sequence	102550-102582	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	MG874044	Salmonella sp. strain Sa76 plasmid pSa76-CIP, complete sequence	95707-95739	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	NZ_CP038456	Escherichia coli strain EC-129 plasmid pEC129_3	8089-8121	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	MH430882	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP, complete sequence	30659-30691	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	MH430881	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence	98927-98959	4	0.879
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	MG874043	Salmonella sp. strain Sa63 plasmid pSa63-CIP, complete sequence	59653-59685	4	0.879
CP034715_3	3.13\|941033\|32\|CP034715\|PILER-CR	941033-941064	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1084720-1084751	6	0.812
CP034715_3	3.25\|941032\|32\|CP034715\|CRISPRCasFinder,CRT	941032-941063	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1084720-1084751	6	0.812
CP034715_4	4.8\|957874\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957874-957905	32	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	32689-32720	6	0.812
CP034715_4	4.8\|957874\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957874-957905	32	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	7133-7164	6	0.812
CP034715_4	4.8\|957874\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957874-957905	32	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	45685-45716	6	0.812
CP034715_4	4.8\|957874\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957874-957905	32	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	30704-30735	7	0.781
CP034715_4	4.8\|957874\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957874-957905	32	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	30247-30278	7	0.781
CP034715_3	3.8\|940729\|32\|CP034715\|PILER-CR	940729-940760	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	234396-234427	8	0.75
CP034715_3	3.8\|940729\|32\|CP034715\|PILER-CR	940729-940760	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	85616-85647	8	0.75
CP034715_3	3.10\|940851\|32\|CP034715\|PILER-CR	940851-940882	32	MN694179	Marine virus AFVG_250M333, complete genome	17778-17809	8	0.75
CP034715_3	3.20\|940728\|32\|CP034715\|CRISPRCasFinder,CRT	940728-940759	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	234396-234427	8	0.75
CP034715_3	3.20\|940728\|32\|CP034715\|CRISPRCasFinder,CRT	940728-940759	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	85616-85647	8	0.75
CP034715_3	3.22\|940850\|32\|CP034715\|CRISPRCasFinder,CRT	940850-940881	32	MN694179	Marine virus AFVG_250M333, complete genome	17778-17809	8	0.75
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
CP034715_4	4.7\|957812\|33\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957812-957844	33	LN890663	Acinetobacter phage vB_AbaS_Loki genome assembly, complete genome: monopartite	7474-7506	8	0.758
CP034715_4	4.8\|957874\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957874-957905	32	NC_021709	Alteromonas mediterranea 615 plasmid unnamed, complete sequence	120479-120510	8	0.75
CP034715_4	4.9\|957935\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957935-957966	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP034715_3	3.5\|940546\|32\|CP034715\|PILER-CR	940546-940577	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4946883-4946914	9	0.719
CP034715_3	3.17\|940545\|32\|CP034715\|CRISPRCasFinder,CRT	940545-940576	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4946883-4946914	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
CP034715_3	3.26\|941093\|32\|CP034715\|CRISPRCasFinder,CRT	941093-941124	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
CP034715_4	4.5\|957690\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957690-957721	32	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	821604-821635	9	0.719
CP034715_4	4.5\|957690\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957690-957721	32	NC_011273	Mycobacterium phage Myrna, complete genome	12501-12532	9	0.719
CP034715_4	4.5\|957690\|32\|CP034715\|PILER-CR,CRISPRCasFinder,CRT	957690-957721	32	NC_010699	Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence	31113-31144	10	0.688
CP034715_4	4.10\|957996\|32\|CP034715\|CRISPRCasFinder,CRT	957996-958027	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP034715_4	4.10\|957996\|32\|CP034715\|CRISPRCasFinder,CRT	957996-958027	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688

1. spacer 3.4|940485|32|CP034715|PILER-CR matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

2. spacer 3.4|940485|32|CP034715|PILER-CR matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

3. spacer 3.4|940485|32|CP034715|PILER-CR matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

4. spacer 3.4|940485|32|CP034715|PILER-CR matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

5. spacer 3.4|940485|32|CP034715|PILER-CR matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

6. spacer 3.16|940484|32|CP034715|CRISPRCasFinder,CRT matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

7. spacer 3.16|940484|32|CP034715|CRISPRCasFinder,CRT matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

8. spacer 3.16|940484|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

9. spacer 3.16|940484|32|CP034715|CRISPRCasFinder,CRT matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

10. spacer 3.16|940484|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 2, identity: 0.938

gcatgggggttcaggctgatgacaatgaaggg	CRISPR spacer
gcatggggattcaggctgatgaccatgaaggg	Protospacer
********.************** ********

11. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX960110 (Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

12. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU295131 (Escherichia coli strain BK28009 plasmid pBK28009, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

13. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026237 (Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

14. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025944 (Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

15. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021734 (Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

16. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to MN604267 (Salmonella enterica subsp. enterica serovar London strain SAL-19-0623 plasmid pSAL-19-0623_NDM, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

17. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG870194 (Salmonella enterica subsp. enterica serovar London strain Sa128 plasmid pSa128, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

18. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to MG874044 (Salmonella sp. strain Sa76 plasmid pSa76-CIP, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

19. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038456 (Escherichia coli strain EC-129 plasmid pEC129_3) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

20. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to MH430882 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

21. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to MH430881 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

22. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to MG874043 (Salmonella sp. strain Sa63 plasmid pSa63-CIP, complete sequence) position: , mismatch: 4, identity: 0.879

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ggtgattcgccagttcgcccgaacggtgatcgc	Protospacer
*  ..****************************

23. spacer 3.13|941033|32|CP034715|PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 6, identity: 0.812

cgccggtt--tcggtggggctgaatcctgaaccg	CRISPR spacer
--gcggctcatcggtggggcggaagcctgaaccg	Protospacer
   ***.*  ********** *** *********

24. spacer 3.25|941032|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 6, identity: 0.812

cgccggtt--tcggtggggctgaatcctgaaccg	CRISPR spacer
--gcggctcatcggtggggcggaagcctgaaccg	Protospacer
   ***.*  ********** *** *********

25. spacer 4.8|957874|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 6, identity: 0.812

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctgatcgggcgctggagaacagcatcaatat	Protospacer
***.*   ****** ********.********

26. spacer 4.8|957874|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctgatcgggcgctggagaacagcatcaatat	Protospacer
***.*   ****** ********.********

27. spacer 4.8|957874|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 6, identity: 0.812

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctgatcgggcgctggagaacagcatcaatat	Protospacer
***.*   ****** ********.********

28. spacer 4.8|957874|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 7, identity: 0.781

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gcggatcgggcgctggagaacagcatcaatat	Protospacer
** .*   ****** ********.********

29. spacer 4.8|957874|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gcggatcgggcgctggagaacagcatcaatat	Protospacer
** .*   ****** ********.********

30. spacer 3.8|940729|32|CP034715|PILER-CR matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

----ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
ggtaaca----cgatcgtctcttccagcctgctgag	Protospacer
     **    .****.****.**************

31. spacer 3.8|940729|32|CP034715|PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 8, identity: 0.75

ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
taatttttgttcatctcttccagccttatcat	Protospacer
. ******* *******.********  * *

32. spacer 3.10|940851|32|CP034715|PILER-CR matches to MN694179 (Marine virus AFVG_250M333, complete genome) position: , mismatch: 8, identity: 0.75

gttaatttgtttttgtggggaattattgttgg	CRISPR spacer
cgtaatttgtttttgtagggaattttttatcc	Protospacer
  **************.******* **  *

33. spacer 3.20|940728|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

----ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
ggtaaca----cgatcgtctcttccagcctgctgag	Protospacer
     **    .****.****.**************

34. spacer 3.20|940728|32|CP034715|CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 8, identity: 0.75

ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
taatttttgttcatctcttccagccttatcat	Protospacer
. ******* *******.********  * *

35. spacer 3.22|940850|32|CP034715|CRISPRCasFinder,CRT matches to MN694179 (Marine virus AFVG_250M333, complete genome) position: , mismatch: 8, identity: 0.75

gttaatttgtttttgtggggaattattgttgg	CRISPR spacer
cgtaatttgtttttgtagggaattttttatcc	Protospacer
  **************.******* **  *

36. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

37. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

38. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

39. spacer 4.7|957812|33|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to LN890663 (Acinetobacter phage vB_AbaS_Loki genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.758

gtgagttcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gcaatttcgccaattcgtccgaacggtgatgcg	Protospacer
*..* *******.****.************

40. spacer 4.8|957874|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctaaaaaggcgattgagaacagcgataccat	Protospacer
******* **** **********.. .* .**

41. spacer 4.9|957935|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

42. spacer 3.5|940546|32|CP034715|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

ataacgagcccgtttctggtggggatgttaat	CRISPR spacer
agcgagagcccgcttctggtcgggatgttcgc	Protospacer
*  . *******.******* ******** ..

43. spacer 3.17|940545|32|CP034715|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

ataacgagcccgtttctggtggggatgttaat	CRISPR spacer
agcgagagcccgcttctggtcgggatgttcgc	Protospacer
*  . *******.******* ******** ..

44. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

45. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

46. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

47. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

48. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

49. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

50. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

51. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

52. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

53. spacer 3.26|941093|32|CP034715|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

54. spacer 4.5|957690|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
ttctggatatcatgctgcctgagttggatgga	Protospacer
* **********  ***********..* .

55. spacer 4.5|957690|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 9, identity: 0.719

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
tcctggagatcatcctgcctgagttcatcggt	Protospacer
* ***** **** ************ *  . .

56. spacer 4.5|957690|32|CP034715|PILER-CR,CRISPRCasFinder,CRT matches to NC_010699 (Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence) position: , mismatch: 10, identity: 0.688

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
caccggatatcagcctgcctgagtccgccccg	Protospacer
.**.********.***********. .   *

57. spacer 4.10|957996|32|CP034715|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

58. spacer 4.10|957996|32|CP034715|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1127174 : 1257190

132

Salmonella_phage(79.57%)

holin,portal,plate,lysis,capsid,head,integrase,tail,tRNA,terminase

attL 1193912:1193928|attR 1224397:1224413

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS98594.1\|1127174_1128371_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	5.9e-106	49.9
AZS98595.1\|1128717_1129743_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.9e-202	99.7
AZS98596.1\|1129746_1130379_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-116	100.0
AZS98597.1\|1130498_1130741_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	1.1e-38	100.0
AZS98598.1\|1130773_1131283_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	6.4e-86	96.4
AZS98599.1\|1131290_1131524_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AZS98600.1\|1131471_1131930_-	hypothetical protein	NA	NA	NA	NA
AZS98601.1\|1132149_1132491_+	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AZS98602.1\|1132558_1132792_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
AZS98603.1\|1132791_1133019_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AZS98604.1\|1133015_1133873_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	9.3e-130	80.7
AZS98605.1\|1136445_1136634_+	hypothetical protein	E5G6M0	Salmonella_phage	6.7e-25	91.9
AZS98606.1\|1136572_1136878_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AZS98607.1\|1136937_1137669_+	hypothetical protein	NA	NA	NA	NA
AZS98608.1\|1138018_1138939_+	hypothetical protein	NA	NA	NA	NA
AZS98609.1\|1138931_1139672_+	restriction endonuclease	NA	NA	NA	NA
AZS98610.1\|1139701_1140748_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	8.5e-194	95.9
AZS98611.1\|1140747_1142514_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.8
AZS98612.1\|1142656_1143490_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
AZS98613.1\|1143506_1144571_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.9e-196	99.7
AZS98614.1\|1145317_1145782_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.9e-85	98.7
AZS98615.1\|1145781_1145985_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.1e-33	98.5
AZS98616.1\|1145988_1146204_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AZS98617.1\|1146184_1146682_+	lysozyme	A0A1S6KZY9	Salmonella_phage	1.6e-86	98.7
AZS98618.1\|1146697_1147075_+	peptidase	A0A1S6KZZ2	Salmonella_phage	4.0e-61	99.2
AZS98619.1\|1147074_1147500_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.1e-67	98.6
AZS98620.1\|1147429_1147633_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.2e-29	95.5
AZS98621.1\|1147595_1148027_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.9e-71	93.7
AZS98622.1\|1148019_1148469_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	9.7e-62	85.0
AZS98623.1\|1148480_1149926_-	hypothetical protein	NA	NA	NA	NA
AZS98624.1\|1150005_1150584_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
AZS98625.1\|1150580_1150940_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	2.1e-59	99.2
AZS98626.1\|1150926_1151835_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.4e-160	100.0
AZS98627.1\|1151827_1152433_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.4e-118	99.5
AZS98628.1\|1152429_1154208_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	3.1e-204	68.0
AZS98629.1\|1154177_1154798_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	9.8e-97	84.6
AZS98630.1\|1155028_1155253_+	hypothetical protein	NA	NA	NA	NA
AZS98631.1\|1155393_1155927_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-83	87.1
AZS98632.1\|1155929_1156796_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.2e-158	98.9
AZS98633.1\|1156825_1157383_+	recombinase family protein	A0A1S6L009	Salmonella_phage	5.5e-99	98.4
AZS98634.1\|1157485_1158658_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
AZS98635.1\|1158667_1159183_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
AZS98636.1\|1159237_1159540_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
AZS98637.1\|1159554_1159674_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
AZS98638.1\|1159666_1162474_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.1
AZS98639.1\|1162470_1162956_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.8e-66	98.5
AZS98640.1\|1162952_1164053_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.4e-193	98.6
AZS98641.1\|1164121_1164340_+	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AZT01537.1\|1164891_1166055_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AZS98642.1\|1166062_1168243_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
AZS98643.1\|1168239_1169649_-	type I secretion protein TolC	NA	NA	NA	NA
AZS98644.1\|1181803_1182286_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AZS98645.1\|1182435_1182912_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AZS98646.1\|1182901_1183192_+	RnfH family protein	NA	NA	NA	NA
AZS98647.1\|1183357_1183696_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AZS98648.1\|1183844_1185506_-	DNA repair protein RecN	NA	NA	NA	NA
AZS98649.1\|1185591_1186470_-	NAD(+) kinase	NA	NA	NA	NA
AZS98650.1\|1187217_1187823_-	cytoplasmic protein	NA	NA	NA	NA
AZS98651.1\|1189248_1190040_-	inner membrane protein YpjD	NA	NA	NA	NA
AZS98652.1\|1189985_1190282_-	hypothetical protein	NA	NA	NA	NA
AZS98653.1\|1190205_1191567_+	signal recognition particle protein	NA	NA	NA	NA
AZS98654.1\|1191910_1192159_+	30S ribosomal protein S16	NA	NA	NA	NA
AZT01538.1\|1192177_1192726_+	ribosome maturation factor RimM	NA	NA	NA	NA
AZS98655.1\|1192770_1193538_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AZS98656.1\|1193578_1193926_+	50S ribosomal protein L19	NA	NA	NA	NA
1193912:1193928	attL	NA	NA	NA	NA
AZS98657.1\|1194070_1194289_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.2e-38	100.0
AZS98658.1\|1194364_1195534_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	3.4e-215	100.0
AZS98659.1\|1195530_1196016_-\|tail	phage tail protein	A0A0M4RCP0	Salmonella_phage	3.6e-86	100.0
AZS98660.1\|1196030_1198475_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	99.9
AZT01539.1\|1198467_1198623_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
AZS98661.1\|1198619_1198955_-\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	1.4e-52	100.0
AZS98662.1\|1199017_1199536_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
AZS98663.1\|1199551_1200739_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	5.8e-223	99.5
AZS98664.1\|1200873_1201422_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	8.4e-100	98.9
AZS98665.1\|1201434_1203411_-\|tail	phage tail protein	S4TP62	Salmonella_phage	0.0e+00	98.5
AZS98666.1\|1203421_1203952_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	2.7e-103	99.4
AZS98667.1\|1203944_1204853_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	4.1e-160	99.3
AZS98668.1\|1204859_1205207_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	7.2e-57	98.3
AZS98669.1\|1205203_1205845_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	8.5e-112	97.2
AZS98670.1\|1205913_1206363_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
AZS98671.1\|1206355_1206823_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
AZS98672.1\|1206785_1206959_-\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	1.1e-24	96.5
AZS98673.1\|1206930_1207344_-\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	6.4e-44	98.5
AZS98674.1\|1207340_1207838_-	lysozyme	S4TUB1	Salmonella_phage	1.2e-92	99.4
AZS98675.1\|1207824_1208121_-\|holin	holin	S4TP56	Salmonella_phage	4.4e-47	100.0
AZS98676.1\|1208124_1208328_-\|tail	phage tail protein	S4TTA0	Salmonella_phage	8.8e-31	97.0
AZS98677.1\|1208926_1209676_-\|terminase	terminase	Q6K1I5	Salmonella_virus	6.4e-127	96.8
AZS98678.1\|1209679_1210747_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.2e-198	99.7
AZS98679.1\|1210823_1211678_-\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
AZS98680.1\|1211843_1213613_+\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	0.0e+00	99.8
AZS98681.1\|1213612_1214659_+\|portal	phage portal protein	A0A0M4S6E8	Salmonella_phage	4.0e-191	100.0
AZS98682.1\|1214793_1214976_-	hypothetical protein	NA	NA	NA	NA
AZS98683.1\|1215261_1215417_-	meiotically up-regulated 80 protein	Q6K1F0	Salmonella_virus	6.3e-21	92.2
AZS98684.1\|1215668_1215902_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.1e-36	100.0
AZS98685.1\|1215905_1216088_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
AZS98686.1\|1216205_1218428_-	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	95.8
AZS98687.1\|1218424_1219255_-	hypothetical protein	A0A0M4RCP6	Salmonella_phage	2.9e-160	98.2
AZS98688.1\|1219258_1219537_-	hypothetical protein	A0A0M4R2Q0	Salmonella_phage	7.3e-44	94.6
AZS98689.1\|1220057_1220282_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	7.2e-34	97.3
AZS98690.1\|1220281_1220509_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
AZS98691.1\|1220578_1220779_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
AZS98692.1\|1220765_1220993_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	6.4e-38	100.0
AZS98693.1\|1221000_1221510_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	3.3e-90	100.0
AZS98694.1\|1221542_1221914_-	Cro/Cl family transcriptional regulator	A0A0M4R4X7	Salmonella_phage	6.1e-62	99.2
AZS98695.1\|1222035_1222896_+	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	1.4e-165	100.0
AZS98696.1\|1222904_1223243_+	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	3.1e-60	100.0
AZS98697.1\|1223265_1224315_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	8.8e-207	100.0
AZS98698.1\|1224567_1225788_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
1224397:1224413	attR	NA	NA	NA	NA
AZS98699.1\|1225780_1226299_-	YfiR family protein	NA	NA	NA	NA
AZS98700.1\|1226738_1227809_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AZS98701.1\|1228996_1229905_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AZS98702.1\|1229865_1231026_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AZT01540.1\|1231125_1231173_-	hypothetical protein	NA	NA	NA	NA
AZS98703.1\|1231276_1231615_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AZS98704.1\|1231756_1231942_-	hypothetical protein	NA	NA	NA	NA
AZS98705.1\|1231886_1232624_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AZS98706.1\|1232755_1233736_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AZS98707.1\|1233732_1234464_+	polyphenol oxidase	NA	NA	NA	NA
AZS98708.1\|1234593_1237167_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
AZT01541.1\|1242422_1242617_-	hypothetical protein	NA	NA	NA	NA
AZS98709.1\|1242992_1243448_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	2.3e-34	50.0
AZS98710.1\|1243551_1244853_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
AZS98711.1\|1244849_1245173_-	YfiM family lipoprotein	NA	NA	NA	NA
AZT01542.1\|1245217_1246573_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AZS98712.1\|1249400_1250081_-	DTW domain-containing protein	NA	NA	NA	NA
AZS98713.1\|1250153_1250573_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AZS98714.1\|1250776_1251814_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AZS98715.1\|1251929_1252619_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AZS98716.1\|1252937_1253321_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AZS98717.1\|1253382_1253970_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
AZS98718.1\|1254072_1254972_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZS98719.1\|1256452_1257190_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1877085 : 1884321

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS99198.1\|1877085_1877505_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AZT01568.1\|1877507_1878776_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.6e-226	91.7
AZS99199.1\|1879231_1879444_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AZT01569.1\|1879454_1879643_+	cold-shock protein	NA	NA	NA	NA
AZS99200.1\|1879903_1881082_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.2e-108	57.0
AZS99201.1\|1881731_1882043_+	hypothetical protein	NA	NA	NA	NA
AZS99202.1\|1882121_1882817_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.2
AZS99203.1\|1882890_1884321_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4

DBSCAN-SWA_3

2605404 : 2692174

113

Salmonella_phage(29.31%)

protease,holin,portal,plate,capsid,head,integrase,tail,tRNA,terminase

attL 2646031:2646045|attR 2688600:2688614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZS99843.1\|2605404_2605932_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AZS99844.1\|2605928_2606036_-	hypothetical protein	NA	NA	NA	NA
AZS99845.1\|2606241_2606688_+	DUF441 domain-containing protein	NA	NA	NA	NA
AZS99846.1\|2606667_2607462_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZS99847.1\|2607562_2608747_+	MFS transporter	NA	NA	NA	NA
AZS99848.1\|2608865_2609213_+	DUF488 domain-containing protein	NA	NA	NA	NA
AZS99849.1\|2609198_2609510_-	hypothetical protein	NA	NA	NA	NA
AZS99850.1\|2609578_2609830_-	DUF333 domain-containing protein	NA	NA	NA	NA
AZS99851.1\|2610024_2610123_+	hypothetical protein	NA	NA	NA	NA
AZS99852.1\|2610261_2610510_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AZS99853.1\|2610517_2610703_-	hypothetical protein	NA	NA	NA	NA
AZS99854.1\|2610823_2611465_-	hypothetical protein	NA	NA	NA	NA
AZS99855.1\|2611694_2611877_-	DUF1869 domain-containing protein	NA	NA	NA	NA
AZS99856.1\|2611879_2612242_-	DUF1971 domain-containing protein	NA	NA	NA	NA
AZS99857.1\|2612414_2613053_-	leucine efflux protein LeuE	NA	NA	NA	NA
AZS99858.1\|2613250_2613796_-	chorismate mutase	NA	NA	NA	NA
AZS99859.1\|2614124_2614373_+	histidine kinase	NA	NA	NA	NA
AZS99860.1\|2614626_2615475_-	MerR family transcriptional regulator	NA	NA	NA	NA
AZT01592.1\|2615543_2616137_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AZS99861.1\|2616281_2617070_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
AZS99862.1\|2617178_2617829_-	metal-binding protein ZinT	NA	NA	NA	NA
AZS99863.1\|2618022_2618349_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
AZS99864.1\|2618542_2619676_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
AZS99865.1\|2619757_2620348_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
AZS99866.1\|2620341_2621139_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
AZS99867.1\|2621132_2621945_-	ABC transporter permease	NA	NA	NA	NA
AZT01593.1\|2621934_2622909_-	ABC transporter permease	NA	NA	NA	NA
AZS99868.1\|2625223_2625538_+	hypothetical protein	NA	NA	NA	NA
AZS99869.1\|2625686_2626217_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
AZS99870.1\|2627680_2628151_-	Hsp20 family protein	NA	NA	NA	NA
AZS99871.1\|2628348_2628573_-	hypothetical protein	NA	NA	NA	NA
AZS99872.1\|2628772_2628898_-	lipoprotein	NA	NA	NA	NA
AZS99873.1\|2629275_2629620_+	c-type lysozyme inhibitor	NA	NA	NA	NA
AZS99874.1\|2630838_2631396_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	2.2e-15	33.0
AZS99875.1\|2631429_2631627_+	hypothetical protein	NA	NA	NA	NA
AZS99876.1\|2631964_2632156_-	hypothetical protein	NA	NA	NA	NA
AZS99877.1\|2632204_2632468_+	virulence protein PagD	NA	NA	NA	NA
AZS99878.1\|2632599_2632812_+	cold shock-like protein CspF	NA	NA	NA	NA
AZS99879.1\|2633228_2633750_+	lipoprotein EnvE	NA	NA	NA	NA
AZS99880.1\|2633930_2634170_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AZS99881.1\|2635080_2635860_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	7.5e-62	50.0
AZS99882.1\|2635932_2636310_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AZS99883.1\|2636458_2637001_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AZS99884.1\|2637192_2637921_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.4e-62	53.3
AZS99885.1\|2637937_2638351_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.9e-19	37.7
AZS99886.1\|2639396_2640521_-	DUF3626 domain-containing protein	NA	NA	NA	NA
AZS99887.1\|2640968_2641181_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
AZS99888.1\|2641434_2642106_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
AZS99889.1\|2642098_2643367_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.7e-244	98.6
AZS99890.1\|2643369_2643789_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	59.8
AZS99891.1\|2644243_2645374_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	4.6e-36	33.6
AZS99892.1\|2645427_2645964_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	1.1e-93	98.3
AZT01594.1\|2645966_2646818_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	1.8e-162	98.6
2646031:2646045	attL	NA	NA	NA	NA
AZS99893.1\|2647886_2648468_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.0e-18	34.1
AZS99894.1\|2648460_2649585_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	7.2e-90	44.7
AZS99895.1\|2649581_2649905_-	hypothetical protein	A0A067ZJ13	Vibrio_phage	6.0e-13	41.3
AZS99896.1\|2649901_2650369_-\|tail	phage tail protein	NA	NA	NA	NA
AZS99897.1\|2650365_2650992_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.5e-32	55.9
AZS99898.1\|2650992_2651994_-	late control D family protein	A0A0C5AJ59	Bacteriophage	1.8e-55	36.3
AZS99899.1\|2651983_2652202_-\|tail	phage tail protein	A0A0C5AEF4	Bacteriophage	1.1e-10	50.0
AZT01595.1\|2652194_2654099_-\|tail	phage tail tape measure protein	A0A097I4X9	Vibrio_phage	1.1e-40	26.0
AZS99900.1\|2654805_2655087_-	hypothetical protein	NA	NA	NA	NA
AZS99901.1\|2655096_2655618_-\|tail	phage tail protein	A0A067ZJA9	Vibrio_phage	1.2e-47	53.2
AZS99902.1\|2655630_2657100_-\|tail	phage tail sheath family protein	A0A059WKP9	Vibrio_phage	2.9e-147	54.5
AZS99903.1\|2657099_2657399_-	hypothetical protein	NA	NA	NA	NA
AZS99904.1\|2657398_2657884_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	8.4e-19	36.0
AZS99905.1\|2657880_2658225_-	sugar transporter	A0A067ZJA6	Vibrio_phage	2.7e-19	43.9
AZS99906.1\|2658231_2658687_-	hypothetical protein	NA	NA	NA	NA
AZS99907.1\|2658687_2659731_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	4.1e-71	44.6
AZS99908.1\|2659746_2660133_-\|head	head decoration protein	NA	NA	NA	NA
AZS99909.1\|2660143_2661208_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	2.0e-81	51.4
AZS99910.1\|2661200_2662763_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.5e-189	64.7
AZS99911.1\|2662759_2662999_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	6.8e-14	54.8
AZS99912.1\|2663010_2664870_-\|terminase	phage terminase large subunit family protein	A0A059WKL6	Vibrio_phage	8.8e-234	64.0
AZS99913.1\|2664875_2665421_-	hypothetical protein	A0A067ZIZ9	Vibrio_phage	3.3e-16	37.2
AZS99914.1\|2665420_2666011_-	nuclease	A0A067ZI74	Vibrio_phage	1.4e-36	53.7
AZS99915.1\|2666534_2667251_-	hypothetical protein	NA	NA	NA	NA
AZS99916.1\|2667609_2668146_+	hypothetical protein	NA	NA	NA	NA
AZS99917.1\|2668286_2668847_+	hypothetical protein	NA	NA	NA	NA
AZS99918.1\|2668872_2669421_-	DUF2514 family protein	NA	NA	NA	NA
AZS99919.1\|2669417_2670032_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.1e-106	91.7
AZS99920.1\|2670031_2670313_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AZS99921.1\|2670299_2670689_-	hypothetical protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
AZS99922.1\|2670780_2670969_-	hypothetical protein	NA	NA	NA	NA
AZS99923.1\|2671023_2671248_+	hypothetical protein	NA	NA	NA	NA
AZS99924.1\|2671495_2671912_-	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
AZS99925.1\|2672037_2672763_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.8e-78	64.1
AZS99926.1\|2672963_2673542_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.2e-49	57.8
AZS99927.1\|2673556_2674546_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.7e-189	97.3
AZS99928.1\|2675429_2675819_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	3.2e-69	99.2
AZS99929.1\|2675827_2676709_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.9e-170	99.0
AZS99930.1\|2676705_2677179_-	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	3.9e-53	94.6
AZS99931.1\|2677175_2678150_-	hypothetical protein	A0A1C9IHW0	Salmonella_phage	4.1e-166	98.1
AZS99932.1\|2678146_2678371_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AZS99933.1\|2678367_2679207_-	peptidase	A0A1C9IHV9	Salmonella_phage	2.2e-147	98.5
AZS99934.1\|2679231_2679561_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.6e-40	90.8
AZS99935.1\|2679550_2679859_+	XRE family transcriptional regulator	A0A088CD40	Shigella_phage	2.5e-45	93.1
AZS99936.1\|2679877_2680054_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-28	94.6
AZS99937.1\|2680193_2680748_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
AZS99938.1\|2680776_2681001_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AZS99939.1\|2680939_2681125_-	amino acid permease	NA	NA	NA	NA
AZT01596.1\|2682610_2682982_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AZS99940.1\|2683039_2683867_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.9e-151	98.5
AZS99941.1\|2684003_2684543_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AZS99942.1\|2684811_2685567_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	2.4e-150	99.2
AZS99943.1\|2685577_2686201_+	protein Eaa	C6ZR26	Salmonella_phage	1.1e-20	85.5
AZS99944.1\|2686197_2686596_+	hypothetical protein	A0A075B8H2	Enterobacteria_phage	8.9e-27	86.4
AZS99945.1\|2686645_2686882_+	excisionase	NA	NA	NA	NA
AZS99946.1\|2686871_2688014_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
AZS99947.1\|2688127_2689378_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
2688600:2688614	attR	NA	NA	NA	NA
AZS99948.1\|2689550_2690216_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AZS99949.1\|2690212_2690542_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AZS99950.1\|2691067_2692174_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection