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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP022572 Bacillus mesonae strain H20-5 chromosome, complete genome 5 crisprs WYL,csa3,DEDDh,RT,DinG,cas3 7 4 5 0

Results visualization

1. CP022572
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022572_1 207989-208170 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022572_2 443004-443557 Orphan NA
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022572_3 1231611-1231686 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022572_4 1384434-1384508 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022572_7 5634191-5634306 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP022572_2 2.9|443454|18|CP022572|CRT 443454-443471 18 CP022572.1 442986-443003 0 1.0
CP022572_6 6.2|4869952|25|CP022572|CRISPRCasFinder 4869952-4869976 25 CP022572.1 4869577-4869601 0 1.0
CP022572_2 2.4|443194|18|CP022572|CRT 443194-443211 18 CP022572.1 443558-443575 1 0.944
CP022572_2 2.7|443350|18|CP022572|CRT 443350-443367 18 CP022572.1 443558-443575 1 0.944
CP022572_2 2.8|443402|18|CP022572|CRT 443402-443419 18 CP022572.1 442986-443003 1 0.944
CP022572_5 5.1|4869625|40|CP022572|CRISPRCasFinder 4869625-4869664 40 CP022572.1 4869250-4869289 2 0.95
CP022572_6 6.3|4870000|40|CP022572|CRISPRCasFinder 4870000-4870039 40 CP022572.1 4869250-4869289 2 0.95

1. spacer 2.9|443454|18|CP022572|CRT matches to position: 442986-443003, mismatch: 0, identity: 1.0

cgagctcggatcccggct	CRISPR spacer
cgagctcggatcccggct	Protospacer
******************

2. spacer 6.2|4869952|25|CP022572|CRISPRCasFinder matches to position: 4869577-4869601, mismatch: 0, identity: 1.0

tactgcctcagtaccgttttcaact	CRISPR spacer
tactgcctcagtaccgttttcaact	Protospacer
*************************

3. spacer 2.4|443194|18|CP022572|CRT matches to position: 443558-443575, mismatch: 1, identity: 0.944

cgtgcttaggccacggct	CRISPR spacer
cgtgtttaggccacggct	Protospacer
****.*************

4. spacer 2.7|443350|18|CP022572|CRT matches to position: 443558-443575, mismatch: 1, identity: 0.944

cgtgcttaggccacggct	CRISPR spacer
cgtgtttaggccacggct	Protospacer
****.*************

5. spacer 2.8|443402|18|CP022572|CRT matches to position: 442986-443003, mismatch: 1, identity: 0.944

cgagctcgggtcccggct	CRISPR spacer
cgagctcggatcccggct	Protospacer
*********.********

6. spacer 5.1|4869625|40|CP022572|CRISPRCasFinder matches to position: 4869250-4869289, mismatch: 2, identity: 0.95

aactactggagtaccttcttctaccttttcgctttcaaca	CRISPR spacer
aactactggagtaccttcttctactttttcgctatcaaca	Protospacer
************************.******** ******

7. spacer 6.3|4870000|40|CP022572|CRISPRCasFinder matches to position: 4869250-4869289, mismatch: 2, identity: 0.95

aactactggagtaccttcttctaccttttcgctttcaaca	CRISPR spacer
aactactggagtaccttcttctactttttcgctatcaaca	Protospacer
************************.******** ******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP022572_1 1.3|208119|26|CP022572|CRISPRCasFinder 208119-208144 26 MG592586 Vibrio phage 1.215.B._10N.222.54.F7, partial genome 74994-75019 4 0.846
CP022572_1 1.3|208119|26|CP022572|CRISPRCasFinder 208119-208144 26 MG592585 Vibrio phage 1.215.A._10N.222.54.F7, partial genome 74995-75020 4 0.846
CP022572_1 1.3|208119|26|CP022572|CRISPRCasFinder 208119-208144 26 KJ801817 Enterococcus phage ECP3, complete genome 128311-128336 5 0.808
CP022572_1 1.3|208119|26|CP022572|CRISPRCasFinder 208119-208144 26 AP018715 Enterococcus phage phiM1EF22 DNA, complete sequence 112235-112260 5 0.808
CP022572_1 1.3|208119|26|CP022572|CRISPRCasFinder 208119-208144 26 AP018714 Enterococcus phage phiEF17H DNA, complete sequence 114507-114532 5 0.808
CP022572_1 1.3|208119|26|CP022572|CRISPRCasFinder 208119-208144 26 MN854830 Enterococcus phage PBEF129, complete genome 7378-7403 5 0.808
CP022572_4 4.1|1384457|29|CP022572|CRISPRCasFinder 1384457-1384485 29 NZ_CP044485 Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence 43673-43701 6 0.793
CP022572_5 5.2|4869688|34|CP022572|CRISPRCasFinder 4869688-4869721 34 AP014347 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C55, *** SEQUENCING IN PROGRESS *** 4778-4811 9 0.735
CP022572_6 6.4|4870063|34|CP022572|CRISPRCasFinder 4870063-4870096 34 AP014347 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C55, *** SEQUENCING IN PROGRESS *** 4778-4811 9 0.735

1. spacer 1.3|208119|26|CP022572|CRISPRCasFinder matches to MG592586 (Vibrio phage 1.215.B._10N.222.54.F7, partial genome) position: , mismatch: 4, identity: 0.846

catcaaaactgttttcaata--agccgt	CRISPR spacer
gatcaaaactgttttcaatatcaacc--	Protospacer
 *******************  *.**  

2. spacer 1.3|208119|26|CP022572|CRISPRCasFinder matches to MG592585 (Vibrio phage 1.215.A._10N.222.54.F7, partial genome) position: , mismatch: 4, identity: 0.846

catcaaaactgttttcaata--agccgt	CRISPR spacer
gatcaaaactgttttcaatatcaacc--	Protospacer
 *******************  *.**  

3. spacer 1.3|208119|26|CP022572|CRISPRCasFinder matches to KJ801817 (Enterococcus phage ECP3, complete genome) position: , mismatch: 5, identity: 0.808

catcaaaactgttttcaataagccgt	CRISPR spacer
aatcaagactgttttcaataagttct	Protospacer
 *****.***************.. *

4. spacer 1.3|208119|26|CP022572|CRISPRCasFinder matches to AP018715 (Enterococcus phage phiM1EF22 DNA, complete sequence) position: , mismatch: 5, identity: 0.808

catcaaaactgttttcaataagccgt	CRISPR spacer
aatcaagactgttttcaataagttct	Protospacer
 *****.***************.. *

5. spacer 1.3|208119|26|CP022572|CRISPRCasFinder matches to AP018714 (Enterococcus phage phiEF17H DNA, complete sequence) position: , mismatch: 5, identity: 0.808

catcaaaactgttttcaataagccgt	CRISPR spacer
aatcaagactgttttcaataagttct	Protospacer
 *****.***************.. *

6. spacer 1.3|208119|26|CP022572|CRISPRCasFinder matches to MN854830 (Enterococcus phage PBEF129, complete genome) position: , mismatch: 5, identity: 0.808

catcaaaactgttttcaataagccgt	CRISPR spacer
aatcaagactgttttcaataagttct	Protospacer
 *****.***************.. *

7. spacer 4.1|1384457|29|CP022572|CRISPRCasFinder matches to NZ_CP044485 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence) position: , mismatch: 6, identity: 0.793

agactccagtcgagagttctcataaacat	CRISPR spacer
ctaatgcagtcgagacttctcataaaaat	Protospacer
  * * ********* ********** **

8. spacer 5.2|4869688|34|CP022572|CRISPRCasFinder matches to AP014347 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C55, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

gtcagcagttacagcagtttcttctactgcttta	CRISPR spacer
ttctacagtttcagcagtttcatctactgtatct	Protospacer
 ** .***** ********** *******. *. 

9. spacer 6.4|4870063|34|CP022572|CRISPRCasFinder matches to AP014347 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C55, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

gtcagcagttacagcagtttcttctactgcttta	CRISPR spacer
ttctacagtttcagcagtttcatctactgtatct	Protospacer
 ** .***** ********** *******. *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 470709 : 480505 9 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 1465516 : 1536591 95 uncultured_Caudovirales_phage(37.1%) tail,holin,capsid,portal,plate NA
DBSCAN-SWA_3 3836278 : 3884816 60 Bacillus_phage(25.0%) coat,protease,tRNA NA
DBSCAN-SWA_4 4407252 : 4416466 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_5 4538474 : 4545167 6 Streptococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage