CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018525	Melissococcus plutonius plasmid pMP1 DAT585 DNA, complete genome	0 crisprs	NA	0	0	0	0
AP018524	Melissococcus plutonius DAT585 DNA, complete genome	1 crisprs	csa3,cas3,DinG,DEDDh,cas2,cas1,cas7,cas8c,cas5	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP018524_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018524_1

1732891-1732982

TypeI

Consensus_repeat	Method
ACTCACTCTATAAAGAGTGAGAC	CRISPRCasFinder

1 spacers

cas2,cas1,cas7,cas8c,cas5

The CRISPR arrays of AP018524_1

>merge|AP018524|1|1732891-1732982|CRISPRCasFinder
ACTCACTCTATAAAGAGTGAGACGAATTTCTTCACCGTTATCTTCAATACTTGATAAAAATTTCAATCCACTCACTCTATGAAGAGTGAGAC

>AP018524|1|1|1732891-1732982|CRISPRCasFinder
ACTCACTCTATAAAGAGTGAGAC	GAATTTCTTCACCGTTATCTTCAATACTTGATAAAAATTTCAATCC
ACTCACTCTATGAAGAGTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
AP018524.1\|BBD15817.1\|1717996_1718989_+\|predicted-Fe-S-oxidoreductase	unknown	unknown	gnl\|CDD\|224163
AP018524.1\|BBD15822.1\|1724190_1725363_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|236304
AP018524.1\|BBD15820.1\|1722002_1723187_-\|S-adenosylmethionine-synthetase	unknown	unknown	gnl\|CDD\|235374
AP018524.1\|BBD15827.1\|1733440_1734472_-\|CRISPR-associated-protein-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
AP018524.1\|BBD15830.1\|1737940_1738660_-\|CRISPR-associated-protein,-Cas5d-family	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
AP018524.1\|BBD15819.1\|1720372_1721839_-\|drug-resistance-transporter,-EmrB/QacA-family	unknown	unknown	gnl\|CDD\|341045
AP018524.1\|BBD15826.1\|1733141_1733432_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
AP018524.1\|BBD15832.1\|1742037_1742814_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|223422
AP018524.1\|BBD15824.1\|1729349_1730129_-\|phosphonate-ABC-transporter-permease-protein-phnE2	unknown	unknown	gnl\|CDD\|273441
AP018524.1\|BBD15835.1\|1746961_1748215_-\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
AP018524.1\|BBD15833.1\|1743247_1743826_-\|aggregation-promoting-factor	unknown	unknown	gnl\|CDD\|197609
AP018524.1\|BBD15818.1\|1718963_1719527_+\|putative-rRNA-methylase-YtqB	unknown	unknown	gnl\|CDD\|377744
AP018524.1\|BBD15834.1\|1744513_1745983_+\|di-tripeptide/cation-symporter-DtpT	unknown	unknown	gnl\|CDD\|225646
AP018524.1\|BBD15829.1\|1735989_1737939_-\|CRISPR-associated-protein	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
AP018524.1\|BBD15816.1\|1717306_1717981_+\|membrane-associated-phospholipid-phosphatase	unknown	unknown	gnl\|CDD\|239486
AP018524.1\|BBD15828.1\|1735122_1735986_-\|CRISPR-associated-protein,-Csd2/Csh2-family	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
AP018524.1\|BBD15821.1\|1723487_1723919_-\|hypothetical-protein	unknown	unknown	unknown
AP018524.1\|BBD15831.1\|1741481_1741700_-\|hypothetical-protein	unknown	unknown	unknown
AP018524.1\|BBD15825.1\|1730125_1730893_-\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
AP018524.1\|BBD15823.1\|1728570_1729350_-\|phosphonate-ABC-transporter-permease-protein-phnE1	unknown	unknown	gnl\|CDD\|273441

Protein	Function_ID	Function_description	E-value
AP018524.1\|BBD15817.1\|1717996_1718989_+\|predicted-Fe-S-oxidoreductase	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	4.29068e-178
AP018524.1\|BBD15822.1\|1724190_1725363_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|236304	PRK08581, PRK08581, amidase domain-containing protein.	6.77845e-66
AP018524.1\|BBD15820.1\|1722002_1723187_-\|S-adenosylmethionine-synthetase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
AP018524.1\|BBD15830.1\|1737940_1738660_-\|CRISPR-associated-protein,-Cas5d-family	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	3.59737e-79
AP018524.1\|BBD15827.1\|1733440_1734472_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
AP018524.1\|BBD15826.1\|1733141_1733432_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.48819e-29
AP018524.1\|BBD15824.1\|1729349_1730129_-\|phosphonate-ABC-transporter-permease-protein-phnE2	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.29402e-80
AP018524.1\|BBD15835.1\|1746961_1748215_-\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
AP018524.1\|BBD15833.1\|1743247_1743826_-\|aggregation-promoting-factor	gnl\|CDD\|197609	smart00257, LysM, Lysin motif.	8.40829e-11
AP018524.1\|BBD15818.1\|1718963_1719527_+\|putative-rRNA-methylase-YtqB	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.52913e-70
AP018524.1\|BBD15829.1\|1735989_1737939_-\|CRISPR-associated-protein	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	5.11567e-150
AP018524.1\|BBD15816.1\|1717306_1717981_+\|membrane-associated-phospholipid-phosphatase	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.7259e-45
AP018524.1\|BBD15828.1\|1735122_1735986_-\|CRISPR-associated-protein,-Csd2/Csh2-family	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.15947e-122
AP018524.1\|BBD15832.1\|1742037_1742814_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|223422	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism].	2.28059e-74
AP018524.1\|BBD15834.1\|1744513_1745983_+\|di-tripeptide/cation-symporter-DtpT	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.34207e-152
AP018524.1\|BBD15819.1\|1720372_1721839_-\|drug-resistance-transporter,-EmrB/QacA-family	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.58923e-59
AP018524.1\|BBD15825.1\|1730125_1730893_-\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	5.90798e-125
AP018524.1\|BBD15823.1\|1728570_1729350_-\|phosphonate-ABC-transporter-permease-protein-phnE1	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.39737e-67

>AP018524.1|BBD15825.1|1730125_1730893_-|ABC-transporter,-ATP-binding-protein
MIQFEHVTKTYPNGVKGLKDINLTIEAGEFVSIIGLSGAGKSTLLRLINRLNEISEGNISINGLSITKAKKNELRKIRRNIGMIFQHFNLVRKSSVQKNVLSGRLGYYSTFKSILGIFSKEDYKLVNDALTRVGMLDKLHERSDALSGGQQQRISIARTLVQQASTILADEPVASLDPITTQMIMKDLKKINQDLKCTVILNLHSVGLARDFSSRIIGLRAGEIVFDGTPEEATDEVLTEIYGADILKSKEEEAI
>AP018524.1|BBD15824.1|1729349_1730129_-|phosphonate-ABC-transporter-permease-protein-phnE2
MKLKDTIHRNLYKHLFIIFLILICICVSGQITEADPLEVFNNADQISEFLQRFFHPDWQYLPKIIEPILKTIKISVVGTILGVIFAVPFACLGTTTITRNPIITTILRFFMSIIRTIPNLLLAALFVAMIGIGEFTGVLTIAVFTFGMVSQLIYEAIETVEHGTIEAADSVGATKTQVAFWVILPQISHQIFGYALYAFEINVRASTVLGYVGAGGIGVILNSSLSLLRYDRVSIIILAILIVVTIIDWISEIIRKKLI
>AP018524.1|BBD15823.1|1728570_1729350_-|phosphonate-ABC-transporter-permease-protein-phnE1
MRKADKVKNYSIIIFLIFVIVYSVFGIDYSGIDKISLVAIKSVLVGLFHPDWQFIYDGSGEDLISLLFLTICIAFLGTLIATFLALPLTLLGARTLWKTHPWIAKIGKFICNVLRAFPELVYAIIFVKVVGPGPFAGVLAIGIHQIGMLGKLYIEELEAMNEEVIESMDAVGAGFWQTTFFARVPELAPTCFSLALNHFEIAVRSAATLGLVGAGGIGAPMIFAIQARSWNKVGIILLGIIFTVFVIDTATGYLRKKLQ
>AP018524.1|BBD15822.1|1724190_1725363_-|N-acetylmuramoyl-L-alanine-amidase
MKQKILPIVVSATLFSSALLLPTTSFAEKLTKPSVSVTSENSQSKNETVESSITTSETHQSTESGSSSTSTPSSSTTSSQETESSSSNGGISNHLPAEKPVIPSKEQQSKKESKTTNTVPVIEDKKEGKPVLEHTTIPNLDKIVVTKNQTTEEFIKKIGESARQVAHQYDLYASVMIAQAILESGSGNSGLASEPNYNLFGIKGEYDGASIVMKTQEDNGKGNLYTIDSAFRKYPSYKESLEDYAKLLKEGLTGNKDYYHGTWKSQTTSYKEATHFLMGRYATDTQYAEKLNQLIDVYNLTAYDEWHEENDAAAQAAHATPMAIKKAAEEKKAEQKKKEKHMDTVKAATKALNNRMEQIKKRKEERTKTFLTQPQQFLFQLLINKNDSVK
>AP018524.1|BBD15821.1|1723487_1723919_-|hypothetical-protein
MYSYTDMILTIMQRVEVYNEIFKAISKEIQEHNYNQELSKKGHDTYIFCRNNVNRFLMEDEGFRKNLKSVQEKEATKILLTGLDTYKEGIYFLLKSLNEQGEIIDPFKFELGLKEKNAAFKLINQACREACEGIRSAHSVHKM
>AP018524.1|BBD15820.1|1722002_1723187_-|S-adenosylmethionine-synthetase
MTEKLLFTSESVSEGHPDKVADQISDAILDAILEKDPMARVACETSVTTGLVLVFGEISTTAYVDIQKIVRQTIKDIGYTRANYGFDGDLVAVLVALDEQSSDIAMGVDEALETKEKKETDEIGAGDQGLMFGFAIDETPELMPLPIALSHRLVHRLAQLRKENHLAYLRPDAKSQVTVEYDDQQQPKRIDTIVISTQHDSNVSLEQIEKDMKELVINEVIPANLLDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGFSRHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGLAKKVEVQLAYAIGVAQPVSISIDTFGTNTVPEDALIQAVRDNFDLRPAGIIDMLDLRKPIYRQTAAYGHFGRTDIDLPWERTDKVDVLKANLEK
>AP018524.1|BBD15819.1|1720372_1721839_-|drug-resistance-transporter,-EmrB/QacA-family
MERKTNVKFVTICLFIATFMTAIEGTIVTTAMPTIIGSLHGIGIMNWVFSIYLLTNAMLTPIYGKLADKIGRKPVFTIGILIFILGSSLCGLSQTMITLIIARTIQGVGAGAILPVSLTILADLYTINKRAKIMGLNNASWGIASVFGPLAGGFIVDTFSWHWIFFINVPIGILVLALIHYYLIEPKRPKSTVPIDVLGSIALMITLLTLLLGFQLMGDYGISWLIFACFGCACLFFILFIFIEKRVQDPVIDLTLFHQSTFVLVNLMATLIYGFLAGVESYIPIWMQDVLGKSAGIGGLALAPMSLLWMVGSFIASHLIGKYSLKKVLVIGLGLIFLGSLGLAFASETLAFIWFFGITSILGCGFGISSTTTTLASQNSVASEKLSIATSLNTLVRTLGQTIMAAVFGVLLNNVMAAKLAESSLPVNNDVLNQLVNPSTVDKIPEKWLLPLKKILYEGLHSIYLVGCILVLIAFLIAFLLKNNKIDD
>AP018524.1|BBD15818.1|1718963_1719527_+|putative-rRNA-methylase-YtqB
MLETALQYSHFLLNEIICPGDHVVDATMGNGNDTLFLAKLVGDKGKVYAFDIQKQALERTRQRLIENQVIQCTELFQQGHETIEQVLPIETTLSAAIFNLGYLPKSDKEIVTLPETTIQAIEQLLIRLKSKGRLLLVIYYGHSGGQEELKAVSCYCQQLPQEQFNVLSYQFINQKNQPPILFCIEKK
>AP018524.1|BBD15817.1|1717996_1718989_+|predicted-Fe-S-oxidoreductase
MKKFIYTDDPNKRYYSWNYALRKVFGKKIFKVPIDAGFDCPNRDGTVAKGGCTFCSVSGSGDMIVAPNEPLPIQFRKEIQLMEKKWPNVEQYIVYFQNFTNTHAPVEIIRHRFEQVINEKGVVGLSIGTRPDCLPEETIDYLAELNERFYLWVELGLQTTFEKTSNQINRAHDYQTYLTSVEKLRQHNIRVCTHLINGLTGESFEMMRDNVRRTLLDSDIQGIKLHLLHLMTNTKMIQDYHEGRLKLMTQEDYVAIICDQLEMIPPEIIIHRLTGDAPANSLIGPMWSLKKWEVLNAIDKELERRNSYQGKYDIRKTKEVIFNARNSTTV
>AP018524.1|BBD15816.1|1717306_1717981_+|membrane-associated-phospholipid-phosphatase
MKHRKQKNSTHFYLLLGSFFLCLFIFLSAIVYFSPESLSEFDSTLTSWSRIFYPHLNTFFKWYTKLANSSVFGVLAIVFAIILAKFKYYAEALWLLINTALIAGVVNTLIKLFISRERPALNHLVTSHNSSYPSGHSIGSILLYGTLVVLMPLFIKNKKVCRLVQYITSIGIFLIGVSRVYTGVHFPSDILGGFLLGLAWLFLSYPVYLNYRFSLPFKQKRKHG
>AP018524.1|BBD15826.1|1733141_1733432_-|CRISPR-associated-protein-Cas2
MLVLITYDVSTTTRNGQQRLRKVAKKCQDHGIRVQNSVFECVVDNTQLTKLRKELIDLIDEQVDSLRIYRLGNNYKTKIEHIGAKATFNIEEPLIF
>AP018524.1|BBD15827.1|1733440_1734472_-|CRISPR-associated-protein-Cas1
MRKLLNTIFITTPKSYLALDGQNLLIKMEDDQKHRMPLHNIEAIITTGYPGISPALMRMCADQNITITFLTSSGKFGCRVVGKTSGNVYLRKKQYQVSEDEMGSLTIARNFIIGKLYNQRWMLERMIREHTLKINVTYFKQISQELKSFIEDISFVQNLDTLRGIEGQAASRYFSLFDQMILQQKEDFRFYSRNRRPPLDNVNALLSFTYTLLSQECTSALEMVGLDPYVGFMHQDRPGRTSLAQDLMEELRGIFADRFILTLINKKMMTKKDFIKKENGTVLLTDEARKRFFLAWQKKKNETIQHPFLGEKITWGIVPYAQALLLSRFLRGDLDGYPPFLWK
>AP018524.1|BBD15828.1|1735122_1735986_-|CRISPR-associated-protein,-Csd2/Csh2-family
MGVLQNKIDFKVVVSVANANPNGDPLNGNRPRQNFDGFGEISDVAIKRKIRNRLQDMQEKIFVQSDDRTDDGITSLKDRVESVEELKKIAADKKKADVDRFSEVACETWLDTRSFGQVFAFKGLELSVGVRGPVSIQMGISLDPIDINSLQITKSVNSVNGNGGKSSDTMGMKHFVDFGVYVFNGSINVQLAEKTKFSEEDAEKIKQALITLFENDASAARPDGSMVVEKIYWWKHPNKLGKYSSAKVHRSVKIEKNKGIDRPKSIEDYHFEVEQLEGIQLIELAGY
>AP018524.1|BBD15829.1|1735989_1737939_-|CRISPR-associated-protein
MSWLADLYQTYENNLDQVGKPIRNIWGKEVILLPISHAYQNAQIEVIIKPTGEFYKAKVIPKEEAATMIPVTIESAGRTSKPMPHGLHDNLQYVAGDYIQYGGDAKKGESFQKYIANLERWCASDFSHPKVQAILTYLKKGTLITDLINYQDEESHQPILIEREGKLVAKWKKEFGEKPEIFSVLASDQFSSFVRFDIYDLNLDAIPVWKDLAISDAFIDYYTTQLSWGGLDYITGKQVPLTENHPSKIRYGGDMAKLISGNDTTNFTFRGRFSEKNQVATIGYETSQKGHNALKWLISKQGKIIDGRVFLTWGEKSVDNLPAVDESSDAIFAEDKETDSITTIDKTSQDFSKSFIKALQGYQQDLRHDQNIHIMILDSATPGRMGILYYRSMEQESYLERLKNWHNQTGWWHAAGWQNAFYGAPSLRTIAEAVHGKRASETLIKNTMTQLFSCVVDNRKMPFNIMQGLLKNASNPLSMELWEWRKTVEIACSVIKHYFYDLEEEYTVALNKEEKDRSYLFGRLLAVADKAEDLALFIQYGEKDKKKQDNDKEKNKDKKERTTNALRYMNAFSNHPVTTWKILQENLIPYYEKLEDKGNYYQNLINQIMTQFDIDDYTDRALTGKYLLGYSSQRIELNNKDKNKDKEEK
>AP018524.1|BBD15830.1|1737940_1738660_-|CRISPR-associated-protein,-Cas5d-family
MRNQISFLVEGEYALFTDPLTKMGGEKWTYPIPTYQALKGITESIYWKPTIIYYIDEVRIMNPIQMETKGIRLMKYNESNASDLAYYTYLKKPKYEVKVHFEFNKNRPDLKLDWNEDKHYQILKRSIKAGGRRDIFLGTRECQGYIEPIEFGREKGSYDEYEEEMNFNTMVHGLSYPDETGKEELLVRLWQPKMVRGIIKFPRPEACSLCRSLKSMNMKPFSIDTIESAELLARSLEEE
>AP018524.1|BBD15831.1|1741481_1741700_-|hypothetical-protein
MNTFQNDLSKKTKNKSINFKLCLVGMVIILMIALHFISMTINLNECFRDFLFWRTHRNYVQKIHFFIIKYRK
>AP018524.1|BBD15832.1|1742037_1742814_-|pyrroline-5-carboxylate-reductase
MIGIIGAGQMGGALIKRFIHSSKFSAKDILVKGGKSNTAKKLQEELQFNLTDTLNDFEDCQMIILATNNASILSVLTDLGDRIKEKQIPILSVAAGVSLKDMQEIMGEMYPLAHCIPNTPVQVNEGILAITYVETIESEKKQTMQAILSVLGRIVEVPEIQLDIFGTIAGCGPAFVDVFIEALSDAAVLNGMPRAISYEIAAQMMKGTAELALKTNQHPGELKDSVTSPGGTTIKGIVALEKNGFRHAVIDGINEIMK
>AP018524.1|BBD15833.1|1743247_1743826_-|aggregation-promoting-factor
MRSLNTILLGTTLAAGIGLCLGTSNAHADSVYTVQSGDTLSSISQKFNGDSQLIQQIARDNSISNLNMIYKGQQLTIKTTNEIRETQTAPTNTVVELQPVITEEPVVQNQSTASTPVTTNTSSAKEWLAQRESGGSYSAMNGRYIGKYQLDASYLNGDYSPENQERVADNYITQRYGSWEGAQAFWQANGWY
>AP018524.1|BBD15834.1|1744513_1745983_+|di-tripeptide/cation-symporter-DtpT
MNDNQSDGSFLGQPKGLSTLFFTEMWERFSYYGMRAILLYYIYDTVANGGLGFPKETGLSIMSIYGSMVFMSSIIGGWISDRWLGSQKTVFFGGLFIMIGHIVLATPFGVSALFVSIFFIVIGTGMLKPNVSDMVGHLYSKTDLRRDSGFSIFYMGINIGALVAPLVVGTLGQEYNYHLGFSIAAIGMFFGLVQFYYKSKTTLAGIGLEPTNPMTNQEKKRFGMILLGVLVFAAIVFGGAAFMSKLTVDFFITIISILGILLPIYYFIKMLTAKNVTPDEKTKVMAYIPLFLAAIVFWSLEEQGSSILALFAADRTRHHLFGIPIAASWFQSLNPVFVVILTPVFVTLWTKLGKHQPSTVVKFALGLIFAGLAYVLLMFPGLLYGTNHKVSPLWLIISFFVIIVGEMCLSPVGLSVTTKLAPKAFEAQTVAIWLLADAASQATNAQIARFYTPHTESAYFGTIGIIAVVVGILLILVKKPIKRLMGSIN
>AP018524.1|BBD15835.1|1746961_1748215_-|L-rhamnose-isomerase
MTSIKQRYEEAKETYQTIGVNTDEVLKRLDEVKISMNVWQGDDIKGFLSDEELSGGISVTGNYPGVARTPKELRQDLEKAYQMIPGKHKLNLHAIYLDTDEKVDLNEIEPKHFKPWVDWAKKQELGLDFNPTFFSHPMFKDGFTLAHPNNEVRDFWIEHGKRSRKIAEYFGEALGQVCVNNFWVPDGYKDSPIDRLTPRRHLMETLDEIFSEDMNPDYTLDAVESKLFGIGLEAYTVGSHEFYMGYGLTRGKLICMDAGHFHPTEVISNKLSAVALFSKGIFLHVSRPMRWDSDHVVIMDDELQEIGRELVRNNLLQKAHIGLDFFDATINRVAAWVIGTRNTQKAVLKAMLEPTDYLKKVELEMDFTTRLAMVEELKDYPFADVWNYYCELKGVPVGLNWLNEIQDYEKNVLSLRS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

639742 : 648206

Streptococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD14914.1\|639742_640387_+	thymidylate kinase	M1PSC7	Streptococcus_phage	4.5e-52	50.5
BBD14915.1\|640405_640735_+	protein from nitrogen regulatory protein P-II (GLNB) family	NA	NA	NA	NA
BBD14916.1\|640734_641703_+	DNA polymerase III delta prime subunit	M1NSC1	Streptococcus_phage	8.3e-34	31.7
BBD14917.1\|641696_642533_+	stage 0 sporulation protein YaaT	NA	NA	NA	NA
BBD14918.1\|642535_642883_+	DNA replication intiation control protein YabA	NA	NA	NA	NA
BBD14919.1\|642941_643853_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.5e-80	55.4
BBD14920.1\|644052_645165_+	DNA polymerase IV	D0R0A3	Streptococcus_phage	1.6e-12	25.7
BBD14921.1\|645363_645966_-	ribonucleotide reductase of class III (anaerobic), activating protein	A0A288TZV3	Enterococcus_phage	3.9e-50	54.7
BBD14922.1\|646013_648206_-	ribonucleotide reductase of class III (anaerobic), large subunit	A0A0C5KKX3	Enterococcus_phage	4.3e-280	64.4

DBSCAN-SWA_2

1448998 : 1504638

Lactobacillus_phage(33.33%)

terminase,integrase,capsid,holin,tRNA,tail

attL 1480434:1480450|attR 1511146:1511162

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD15565.1\|1448998_1450786_-\|tRNA	aspartyl-tRNA synthetase	A0A1V0SAC0	Catovirus	4.0e-10	24.3
BBD15566.1\|1450790_1452080_-\|tRNA	histidyl-tRNA synthetase	NA	NA	NA	NA
BBD15567.1\|1452598_1453879_-	putative permease	NA	NA	NA	NA
BBD15568.1\|1454932_1455865_+	oxidoreductase ion channel	NA	NA	NA	NA
BBD15569.1\|1456005_1456455_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
BBD15570.1\|1456471_1458691_-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase/GTP pyrophosphokinase, (p)ppGpp synthetase II	A0A142EZT7	Stenotrophomonas_phage	9.5e-09	38.8
BBD15571.1\|1459665_1460613_-	ribosomal protein L11 methyltransferase	NA	NA	NA	NA
BBD15572.1\|1460626_1460758_-	hypothetical protein	NA	NA	NA	NA
BBD15573.1\|1461048_1461753_-	DNA-3-methyladenine glycosylase II	NA	NA	NA	NA
BBD15574.1\|1461876_1463157_+	uncharacterized ATPase (AAA family) associated with cysteine desulfurase	A0A127AWE7	Bacillus_phage	2.4e-105	49.4
BBD15575.1\|1463540_1463819_+	hypothetical protein	NA	NA	NA	NA
BBD15576.1\|1463914_1464415_+	universal stress protein family	NA	NA	NA	NA
BBD15577.1\|1465152_1466346_-	acetate kinase	NA	NA	NA	NA
BBD15578.1\|1466374_1467382_-	adenine-specific methyltransferase	NA	NA	NA	NA
BBD15579.1\|1467661_1467967_-	hypothetical protein	NA	NA	NA	NA
BBD15580.1\|1467996_1468437_-	competence protein	NA	NA	NA	NA
BBD15581.1\|1468417_1468762_-	competence protein	NA	NA	NA	NA
BBD15582.1\|1468778_1469183_-	late competence protein ComGD, access of DNA to ComEA	NA	NA	NA	NA
BBD15583.1\|1469791_1469911_-	hypothetical protein	NA	NA	NA	NA
BBD15584.1\|1470065_1470665_-	phage protein	Q938J3	Temperate_phage	4.0e-31	40.0
BBD15585.1\|1471286_1472042_-	phage lysin, N-acetylmuramoyl-L-alanine amidase	Q9AF60	Streptococcus_phage	2.8e-29	54.2
BBD15586.1\|1472056_1472251_-	hypothetical protein	A0A1P8BL51	Lactococcus_phage	7.2e-06	33.9
BBD15587.1\|1472252_1472495_-\|holin	holin	NA	NA	NA	NA
BBD15588.1\|1472532_1472679_-	hypothetical protein	A0A2H4J2R9	uncultured_Caudovirales_phage	4.9e-07	53.5
BBD15589.1\|1472668_1473043_-	hypothetical protein	NA	NA	NA	NA
BBD15590.1\|1473062_1473524_-	hypothetical protein	NA	NA	NA	NA
BBD15591.1\|1473523_1474216_-	prophage Lp1 protein 54	Q4ZE15	Staphylococcus_virus	8.8e-30	53.4
BBD15592.1\|1474205_1474454_-	hypothetical protein	NA	NA	NA	NA
BBD15593.1\|1474453_1475830_-	hypothetical protein	O03938	Lactobacillus_phage	2.1e-59	36.1
BBD15594.1\|1475842_1476667_-	hypothetical protein	D2KRB8	Lactobacillus_phage	1.3e-56	41.2
BBD15595.1\|1476666_1478205_-\|tail	phage tail length tape-measure protein	D2KRB7	Lactobacillus_phage	7.4e-61	34.5
BBD15596.1\|1479006_1480860_-\|tail	phage tail length tape-measure protein	O03937	Lactobacillus_phage	1.0e-101	48.9
1480434:1480450	attL	NA	NA	NA	NA
BBD15597.1\|1480944_1481391_-	phage protein	O03936	Lactobacillus_phage	2.2e-26	45.3
BBD15598.1\|1481400_1481562_-	hypothetical protein	NA	NA	NA	NA
BBD15599.1\|1481697_1482000_-	hypothetical protein	NA	NA	NA	NA
BBD15600.1\|1482305_1482827_-\|capsid	minor capsid protein	O03972	Lactobacillus_phage	7.8e-31	44.9
BBD15601.1\|1482823_1483231_-	hypothetical protein	O03934	Lactobacillus_phage	1.7e-25	42.9
BBD15602.1\|1483230_1483584_-\|capsid	phage minor capsid protein	B3GW08	Streptococcus_phage	2.2e-16	39.8
BBD15603.1\|1483584_1483935_-\|capsid	phage capsid and scaffold	O03932	Lactobacillus_phage	1.2e-27	51.3
BBD15604.1\|1483931_1484141_-	hypothetical protein	NA	NA	NA	NA
BBD15605.1\|1484153_1484321_-	hypothetical protein	NA	NA	NA	NA
BBD15606.1\|1484387_1485251_-\|capsid	major capsid protein	U3PDP8	Lactobacillus_phage	4.9e-94	61.3
BBD15607.1\|1485262_1485460_-	hypothetical protein	NA	NA	NA	NA
BBD15608.1\|1485469_1485841_-	hypothetical protein	A0A0A8WEG1	Clostridium_phage	6.0e-09	35.0
BBD15609.1\|1485951_1486767_-\|capsid	phage capsid and scaffold	O03929	Lactobacillus_phage	4.0e-66	58.7
BBD15610.1\|1486875_1487094_-\|capsid	minor capsid protein	O03929	Lactobacillus_phage	8.4e-11	50.7
BBD15611.1\|1487090_1488647_-\|capsid	phage minor capsid protein	O03928	Lactobacillus_phage	6.0e-143	53.0
BBD15612.1\|1488663_1489110_-\|terminase	phage terminase, large subunit	A4L7R3	Lactococcus_phage	9.6e-54	65.8
BBD15613.1\|1489106_1489514_-\|terminase	phage terminase, large subunit	A4L7R3	Lactococcus_phage	1.2e-42	58.9
BBD15614.1\|1489562_1489853_-\|terminase	phage terminase, large subunit	D2KRB7	Lactobacillus_phage	6.5e-27	61.9
BBD15615.1\|1489981_1490491_-\|terminase	phage terminase, small subunit	E0Y3R8	Staphylococcus_virus	1.3e-17	39.8
BBD15616.1\|1490933_1491062_-	hypothetical protein	NA	NA	NA	NA
BBD15617.1\|1491082_1491628_-	hypothetical protein	NA	NA	NA	NA
BBD15618.1\|1491935_1492355_-	transcriptional regulator, RinA family	E9LUP5	Lactobacillus_phage	1.8e-22	46.0
BBD15619.1\|1492368_1492635_-	phage protein	A0A249XZT5	Enterococcus_phage	2.8e-24	61.6
BBD15620.1\|1492624_1493011_-	hypothetical protein	NA	NA	NA	NA
BBD15621.1\|1493011_1493212_-	hypothetical protein	NA	NA	NA	NA
BBD15622.1\|1493312_1494059_-	phage-related protein	A0A097BY87	Enterococcus_phage	9.3e-94	70.3
BBD15623.1\|1494065_1494485_-	hypothetical protein	A0A097BY30	Enterococcus_phage	2.2e-44	69.4
BBD15624.1\|1494515_1494935_-	hypothetical protein	S6B1L9	Thermus_phage	1.3e-31	52.3
BBD15625.1\|1494952_1495252_-	single-stranded DNA-binding protein	A0A286QQM5	Streptococcus_phage	1.4e-11	43.4
BBD15626.1\|1495275_1495458_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	7.4e-21	76.7
BBD15627.1\|1495454_1496015_-	hypothetical protein	NA	NA	NA	NA
BBD15628.1\|1496460_1496916_-	phage replication initiation	V5UQV4	Oenococcus_phage	1.2e-48	66.2
BBD15629.1\|1496919_1497606_-	conserved hypothetical protein	C9E2N1	Enterococcus_phage	6.8e-83	62.9
BBD15630.1\|1497713_1498367_-	phage protein	J7KGZ1	Streptococcus_phage	1.7e-46	48.8
BBD15631.1\|1498374_1499103_-	some similarities to phage related proteins	A8ATK8	Listeria_phage	9.5e-59	50.6
BBD15632.1\|1499095_1499404_-	hypothetical protein	NA	NA	NA	NA
BBD15633.1\|1499458_1499599_-	hypothetical protein	NA	NA	NA	NA
BBD15634.1\|1499595_1499787_-	hypothetical protein	NA	NA	NA	NA
BBD15635.1\|1499773_1499953_-	hypothetical protein	NA	NA	NA	NA
BBD15636.1\|1499965_1500724_-	phage antirepressor protein	Q6SEF4	Lactobacillus_prophage	1.1e-97	70.2
BBD15637.1\|1500720_1500963_-	hypothetical protein	A0A1X9I5Q5	Streptococcus_phage	1.9e-11	55.4
BBD15638.1\|1501148_1501865_+	repressor protein	A0A141E0Q5	Streptococcus_phage	1.4e-46	42.4
BBD15639.1\|1501969_1502641_+	prophage pi3 protein 59	Q9AZW5	Lactococcus_phage	2.2e-33	47.9
BBD15640.1\|1502738_1503083_+	hypothetical protein	A0A0P0I7G8	Lactobacillus_phage	2.5e-09	39.1
BBD15641.1\|1503202_1503673_+\|integrase	phage integrase	A0A141E1S1	Streptococcus_phage	1.2e-57	71.4
BBD15642.1\|1503904_1504039_+	hypothetical protein	A0A097BYD1	Leuconostoc_phage	2.4e-08	62.8
BBD15643.1\|1504086_1504638_+\|integrase	phage integrase	A0A141E1W5	Streptococcus_phage	6.6e-12	31.0
1511146:1511162	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1521261 : 1533819

Lactococcus_phage(38.46%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD15655.1\|1521261_1522128_-	hypothetical protein BH3604	M1Q1P6	Streptococcus_phage	1.8e-32	33.5
BBD15656.1\|1522841_1523624_-	phage lysin, glycosyl hydrolase, family 25	A0A1S5S9Z7	Streptococcus_phage	1.3e-40	50.0
BBD15657.1\|1523671_1523866_-	hypothetical protein	A0A1P8BL51	Lactococcus_phage	1.2e-05	35.5
BBD15658.1\|1523880_1524087_-	hypothetical protein	A0A0S2MYG0	Enterococcus_phage	2.6e-14	59.1
BBD15659.1\|1524430_1524745_-	hypothetical protein	NA	NA	NA	NA
BBD15660.1\|1524761_1524977_-	hypothetical protein	NA	NA	NA	NA
BBD15661.1\|1524976_1525219_-	hypothetical protein	NA	NA	NA	NA
BBD15662.1\|1525221_1525839_-	hypothetical protein	NA	NA	NA	NA
BBD15663.1\|1525831_1526806_-	ORF48	Q9AZX4	Lactococcus_phage	1.5e-35	35.7
BBD15664.1\|1526824_1527247_-	hypothetical protein	A0A0S2MYI0	Enterococcus_phage	2.8e-26	44.8
BBD15665.1\|1527305_1529492_-	hypothetical protein	Q9AYV6	Lactococcus_phage	2.0e-176	45.9
BBD15666.1\|1529500_1530259_-	hypothetical protein	D7RWD9	Brochothrix_phage	2.4e-52	42.5
BBD15667.1\|1530273_1532157_-\|tail	phage tail length tape-measure protein	A0A1L2JXP6	Streptococcus_phage	9.2e-21	29.2
BBD15668.1\|1532172_1532496_-	phage protein	A0A1P8BLR3	Lactococcus_phage	3.2e-22	52.9
BBD15669.1\|1532513_1532861_-	hypothetical protein	Q77RZ7	Lactococcus_phage	2.1e-24	51.0
BBD15670.1\|1532901_1533417_-\|tail	phage tail protein	D7RWD5	Brochothrix_phage	2.7e-52	60.1
BBD15671.1\|1533417_1533819_-	major structural protein 2	C9E2J9	Enterococcus_phage	1.4e-27	49.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage