CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034768	Enterobacter sp. N18-03635 plasmid pFRI-6, complete sequence	0 crisprs	NA	0	0	1	0
CP034769	Enterobacter sp. N18-03635 chromosome, complete genome	0 crisprs	DEDDh,csa3,WYL,DinG,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2426492 : 2462553

Enterobacteria_phage(22.86%)

terminase,tail,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV05874.1\|2426492_2427170_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	7.0e-80	61.6
AZV05875.1\|2427236_2429024_+	hypothetical protein	NA	NA	NA	NA
AZV05876.1\|2429057_2430326_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.5e-229	92.6
AZV05877.1\|2430328_2430748_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.9e-37	59.1
AZV05878.1\|2430967_2432200_-\|tail	tail fiber domain-containing protein	S4TSP4	Salmonella_phage	2.9e-60	70.5
AZV05879.1\|2432245_2433199_-	hypothetical protein	G5DMH8	Enterobacter_virus	9.4e-99	53.5
AZV05880.1\|2433201_2436420_-	DUF1983 domain-containing protein	K7P7G9	Enterobacteria_phage	0.0e+00	86.4
AZV05881.1\|2436473_2437190_-	YnfC family lipoprotein	NA	NA	NA	NA
AZV05882.1\|2437243_2437834_-\|tail	tail assembly protein	K7PH91	Enterobacterial_phage	5.0e-58	61.7
AZV05883.1\|2437833_2438556_-	peptidase P60	K7PJV6	Enterobacteria_phage	1.6e-127	84.3
AZV05884.1\|2438557_2439313_-\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	2.2e-119	80.0
AZV05885.1\|2439309_2439657_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	2.2e-37	60.9
AZV05886.1\|2439711_2440515_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	1.9e-52	47.0
AZV05887.1\|2440590_2443503_-\|tail	phage tail tape measure protein	I6PCW3	Cronobacter_phage	3.5e-152	38.9
AZV05888.1\|2443499_2443814_-	hypothetical protein	I6PD79	Cronobacter_phage	6.4e-20	58.8
AZV05889.1\|2443810_2444122_-	hypothetical protein	I6PDG2	Cronobacter_phage	1.1e-35	68.9
AZV05890.1\|2444187_2444859_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	1.8e-51	46.8
AZV05891.1\|2444925_2445336_-	hypothetical protein	I6PDJ8	Cronobacter_phage	3.4e-37	55.1
AZV05892.1\|2445332_2445917_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.2e-48	53.2
AZV05893.1\|2445918_2446269_-	hypothetical protein	I6PD77	Cronobacter_phage	5.3e-31	51.7
AZV05894.1\|2446268_2446751_-	hypothetical protein	A0A2I7RQ74	Vibrio_phage	2.5e-07	30.6
AZV05895.1\|2447068_2448022_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	4.1e-134	75.0
AZV05896.1\|2448033_2448804_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.1e-68	59.6
AZV05897.1\|2448884_2449982_-	hypothetical protein	I6PD76	Cronobacter_phage	9.5e-119	58.7
AZV05898.1\|2449983_2451372_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.2e-124	49.5
AZV05899.1\|2451373_2452681_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.9e-143	57.3
AZV05900.1\|2452658_2453648_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	4.1e-36	42.5
AZV05901.1\|2454301_2454664_+	hypothetical protein	NA	NA	NA	NA
AZV05902.1\|2454691_2454985_-	hypothetical protein	NA	NA	NA	NA
AZV05903.1\|2455067_2455529_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	1.1e-44	66.7
AZV05904.1\|2455977_2456238_+	hypothetical protein	NA	NA	NA	NA
AZV05905.1\|2456316_2456730_-	C-lysozyme inhibitor	NA	NA	NA	NA
AZV05906.1\|2457117_2457636_-	hypothetical protein	K7PHH7	Enterobacteria_phage	1.1e-77	86.0
AZV07855.1\|2457632_2458169_-	lysozyme	K7PM52	Enterobacteria_phage	2.0e-90	89.6
AZV05907.1\|2458168_2458471_-	hypothetical protein	O64361	Escherichia_phage	7.0e-32	66.3
AZV05908.1\|2459551_2459743_-	hypothetical protein	NA	NA	NA	NA
AZV05909.1\|2459936_2460770_-	antitermination protein	K7PKS8	Enterobacteria_phage	2.7e-126	80.9
AZV07856.1\|2460766_2461129_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	4.0e-50	81.4
AZV05910.1\|2461131_2461338_-	hypothetical protein	H6WRY8	Salmonella_phage	3.0e-26	77.3
AZV05911.1\|2461337_2461940_-	DUF1367 family protein	H6WRY7	Salmonella_phage	3.1e-95	83.5
AZV07857.1\|2461979_2462177_-	hypothetical protein	K7PHG9	Enterobacteria_phage	1.4e-20	70.5
AZV05912.1\|2462328_2462553_-	DinI family protein	A0A0M4REN2	Salmonella_phage	1.6e-20	66.2

DBSCAN-SWA_2

2467542 : 2484109

Enterobacteria_phage(38.46%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV05917.1\|2467542_2468229_-	phage replication protein	G8C7U6	Escherichia_phage	3.2e-80	63.0
AZV05918.1\|2468225_2469083_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.0e-99	70.4
AZV05919.1\|2469227_2469779_-	hypothetical protein	K7PJT7	Enterobacteria_phage	7.5e-32	46.4
AZV05920.1\|2469781_2470009_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	5.4e-21	63.5
AZV05921.1\|2470111_2470495_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	4.9e-46	75.0
AZV05922.1\|2470583_2471324_+	hypothetical protein	NA	NA	NA	NA
AZV05923.1\|2471320_2472139_+	DUF3037 domain-containing protein	NA	NA	NA	NA
AZV05924.1\|2472913_2476051_+	exodeoxyribonuclease	K7P6V4	Enterobacteria_phage	0.0e+00	63.0
AZV05925.1\|2476060_2477146_+	enterohemolysin	K7PKR8	Enterobacteria_phage	1.6e-123	63.6
AZV05926.1\|2477184_2477427_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	2.3e-33	93.6
AZV05927.1\|2477491_2477704_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	4.3e-20	64.8
AZV05928.1\|2477705_2478944_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	5.6e-168	70.0
AZV05929.1\|2478993_2479929_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.6e-141	95.7
AZV05930.1\|2479971_2481345_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.7e-51	31.7
AZV07858.1\|2481372_2481555_-	hypothetical protein	NA	NA	NA	NA
AZV05931.1\|2481828_2482812_-	zinc transporter ZntB	NA	NA	NA	NA
AZV05932.1\|2482966_2484109_-	chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	8.9e-11	28.3

DBSCAN-SWA_3

3505435 : 3547224

Salmonella_phage(36.36%)

head,integrase,tail,holin

attL 3522278:3522292|attR 3531172:3531186

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV06812.1\|3505435_3505918_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
AZV06813.1\|3506642_3506909_+	DinI family protein	K7PKR6	Enterobacteria_phage	8.0e-40	94.3
AZV06814.1\|3507250_3507616_+	hypothetical protein	NA	NA	NA	NA
AZV06815.1\|3507720_3508149_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	8.4e-39	56.1
AZV06816.1\|3508904_3509585_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	4.5e-111	82.7
AZV06817.1\|3509581_3510781_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	5.7e-194	88.5
AZV06818.1\|3510781_3511135_-	hypothetical protein	A0A0M4R339	Salmonella_phage	5.1e-58	94.9
AZV06819.1\|3511134_3511887_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	4.4e-91	69.4
AZV06820.1\|3511948_3512329_-	hypothetical protein	NA	NA	NA	NA
AZV06821.1\|3512325_3513105_-	hypothetical protein	NA	NA	NA	NA
AZV06822.1\|3513201_3513555_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.9e-29	85.1
AZV06823.1\|3513554_3514622_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	1.7e-157	84.5
AZV06824.1\|3514624_3514927_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	9.7e-50	94.0
AZV06825.1\|3514926_3515514_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.5e-88	90.8
AZV06826.1\|3515513_3517493_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	2.8e-270	75.4
AZV07897.1\|3517482_3517659_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	4.7e-12	72.9
AZV06827.1\|3517670_3518123_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.1e-60	78.0
AZV06828.1\|3518126_3518567_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.0e-56	74.7
AZV06829.1\|3518578_3519724_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	7.0e-165	76.4
AZV06830.1\|3519727_3520273_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.3e-47	50.3
AZV06831.1\|3520265_3520670_-\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	5.9e-42	68.5
AZV06832.1\|3520669_3521176_-	hypothetical protein	NA	NA	NA	NA
AZV06833.1\|3521172_3521583_-	DUF4054 domain-containing protein	A0A2H4J1A6	uncultured_Caudovirales_phage	4.4e-29	51.9
AZV06834.1\|3521554_3521965_-	hypothetical protein	NA	NA	NA	NA
AZV06835.1\|3522009_3522957_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	9.4e-107	59.8
3522278:3522292	attL	NA	NA	NA	NA
AZV06836.1\|3522968_3523472_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	9.9e-31	47.6
AZV06837.1\|3523483_3524755_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.1e-78	42.6
AZV07898.1\|3525016_3525550_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	2.5e-48	56.9
AZV06838.1\|3525620_3527090_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	2.1e-158	56.9
AZV06839.1\|3527091_3528708_-	TerL protein	A0A0M5M1R6	Salmonella_phage	4.7e-268	80.4
AZV06840.1\|3528906_3529509_-	hypothetical protein	NA	NA	NA	NA
AZV06841.1\|3529753_3530761_-\|integrase	site-specific integrase	Q9T1Z2	Lactococcus_phage	9.0e-07	25.1
AZV06842.1\|3530842_3531073_-	hypothetical protein	NA	NA	NA	NA
AZV06843.1\|3531150_3531696_-	hypothetical protein	K7PHH7	Enterobacteria_phage	3.3e-48	61.7
3531172:3531186	attR	NA	NA	NA	NA
AZV06844.1\|3531692_3532133_-	lysozyme	A0A0M4R365	Salmonella_phage	5.6e-62	80.5
AZV06845.1\|3532132_3532408_-\|holin	phage holin family protein	NA	NA	NA	NA
AZV06846.1\|3532404_3532803_-	hypothetical protein	NA	NA	NA	NA
AZV06847.1\|3533531_3534026_-	hypothetical protein	NA	NA	NA	NA
AZV06848.1\|3534112_3534307_-	hypothetical protein	NA	NA	NA	NA
AZV06849.1\|3534480_3535284_-	antitermination protein	F1C595	Cronobacter_phage	1.1e-103	71.5
AZV06850.1\|3535280_3536141_-	helix-turn-helix domain-containing protein	A0A1B5FPA6	Escherichia_phage	9.6e-143	87.4
AZV06851.1\|3536140_3537115_-	DNA primase	F1C597	Cronobacter_phage	1.7e-164	85.2
AZV06852.1\|3537111_3538728_-	DEAD/DEAH box helicase	A0A1B5FPA4	Escherichia_phage	8.1e-284	87.7
AZV06853.1\|3539156_3539459_-	hypothetical protein	A0A1B5FPB9	Escherichia_phage	1.9e-29	69.1
AZV06854.1\|3539430_3539655_-	XRE family transcriptional regulator	A0A286S2C1	Klebsiella_phage	2.3e-24	88.1
AZV06855.1\|3539753_3540422_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	1.4e-117	92.3
AZV06856.1\|3540593_3540809_+	hypothetical protein	NA	NA	NA	NA
AZV06857.1\|3540805_3541024_+	hypothetical protein	NA	NA	NA	NA
AZV06858.1\|3541084_3541471_+	S24 family peptidase	F1C5A0	Cronobacter_phage	8.9e-40	60.0
AZV06859.1\|3541577_3541799_+	hypothetical protein	NA	NA	NA	NA
AZV06860.1\|3541791_3542124_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.3e-42	77.3
AZV06861.1\|3542149_3542362_+	hypothetical protein	A0A1B5FPB7	Escherichia_phage	1.6e-11	51.4
AZV06862.1\|3542333_3542555_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	2.5e-18	66.7
AZV06863.1\|3542551_3542776_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	6.1e-17	62.5
AZV06864.1\|3542876_3543188_+	hypothetical protein	NA	NA	NA	NA
AZV06865.1\|3543177_3543387_+	excisionase	I6PBM8	Cronobacter_phage	4.4e-33	97.1
AZV06866.1\|3543341_3544514_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	1.6e-209	94.3
AZV06867.1\|3544549_3545017_-	hypothetical protein	NA	NA	NA	NA
AZV06868.1\|3545018_3545573_-	DUF4065 domain-containing protein	A0A139ZPG5	Marinitoga_camini_virus	2.0e-08	29.1
AZV07899.1\|3546177_3547224_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EI66	Megavirus	4.8e-19	42.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP034768

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10790 : 18562

Macacine_betaherpesvirus(33.33%)

integrase

attL 6145:6159|attR 21295:21309

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6145:6159	attL	NA	NA	NA	NA
AZV03619.1\|10790_11567_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.3e-50	89.3
AZV03620.1\|11639_11945_-	hypothetical protein	NA	NA	NA	NA
AZV03621.1\|11941_12568_-	cobyrinic acid ac-diamide synthase	Q2A085	Sodalis_phage	2.9e-24	34.8
AZV03622.1\|12800_14159_+	hypothetical protein	NA	NA	NA	NA
AZV03623.1\|14458_15214_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	7.9e-133	94.0
AZV03624.1\|15656_16928_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.6e-154	63.3
AZV03625.1\|16927_17359_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.9e-29	52.5
AZV03626.1\|17587_18562_+	StbA family protein	A0A222YXF2	Escherichia_phage	3.7e-74	47.4
21295:21309	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034769

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP034768

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection