CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP033223	Sedimentitalea sp. W43 plasmid pW43D, complete sequence	0 crisprs	NA	0
CP033221	Sedimentitalea sp. W43 plasmid pW43B, complete sequence	0 crisprs	NA	0
CP033222	Sedimentitalea sp. W43 plasmid pW43C, complete sequence	0 crisprs	NA	0
CP033219	Sedimentitalea sp. W43 chromosome, complete genome	0 crisprs	csa3,WYL,cas3,Cas9_archaeal,DEDDh	5
CP033220	Sedimentitalea sp. W43 plasmid pW43A, complete sequence	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1663111 : 1745384

Thiobacimonas_phage(17.65%)

head,transposase,tail,plate,capsid,tRNA,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV77860.1\|1663111_1665289_-\|transposase	transposase	A0A1B1P6Z4	Rhodovulum_phage	5.3e-206	52.6
AZV77861.1\|1665248_1666250_-	chromosome partitioning protein ParB	A0A1B0T6H9	Thiobacimonas_phage	1.2e-35	41.1
AZV77862.1\|1666357_1666897_-	hypothetical protein	NA	NA	NA	NA
AZV77863.1\|1667168_1667504_-	hypothetical protein	NA	NA	NA	NA
AZV77864.1\|1667615_1667933_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZV77865.1\|1668707_1669451_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
AZV77866.1\|1669450_1670221_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.4e-20	34.4
AZV77867.1\|1670217_1671078_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AZV77868.1\|1671077_1672931_-	cytochrome C	NA	NA	NA	NA
AZV77869.1\|1673042_1673492_+	transcriptional regulator MntR	NA	NA	NA	NA
AZV77870.1\|1674212_1677539_+	WD40 repeat domain-containing protein	NA	NA	NA	NA
AZV77871.1\|1678625_1679414_-	hypothetical protein	NA	NA	NA	NA
AZV77872.1\|1679496_1680387_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	2.3e-86	61.0
AZV77873.1\|1680296_1680479_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AZV77874.1\|1680628_1681603_-\|tail	phage tail protein	D4HTW7	Vibrio_phage	1.4e-49	39.3
AZV77875.1\|1681607_1681811_-\|tail	phage tail protein	A0A1W6JT40	Escherichia_phage	5.6e-09	48.5
AZV80377.1\|1681807_1682188_-\|tail	phage tail protein	Q8H9M3	Vibrio_phage	1.7e-19	41.0
AZV77876.1\|1682208_1685244_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	3.0e-82	36.1
AZV77877.1\|1685230_1685371_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AZV77878.1\|1685397_1685715_-\|tail	phage tail assembly protein	R4JJY8	Burkholderia_phage	1.5e-13	43.8
AZV77879.1\|1685719_1686004_-	hypothetical protein	NA	NA	NA	NA
AZV77880.1\|1686077_1686575_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	1.3e-27	39.3
AZV77881.1\|1686592_1687777_-\|tail	phage tail protein	V5YTI0	Pseudomonas_phage	1.1e-96	42.8
AZV77882.1\|1687779_1688292_-	hypothetical protein	NA	NA	NA	NA
AZV77883.1\|1688304_1689018_-	hypothetical protein	NA	NA	NA	NA
AZV77884.1\|1689028_1689544_-\|transposase	transposase	NA	NA	NA	NA
AZV77885.1\|1689543_1690284_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	4.1e-25	43.0
AZV77886.1\|1690276_1691182_-\|plate	baseplate assembly protein	A0A193GYM8	Enterobacter_phage	1.8e-70	49.1
AZV77887.1\|1691178_1691523_-	hypothetical protein	A0A193GYY8	Enterobacter_phage	1.4e-20	49.1
AZV77888.1\|1691519_1691720_-	hypothetical protein	NA	NA	NA	NA
AZV77889.1\|1691716_1692151_-\|plate	phage baseplate assembly protein V	A0A0M3ULA5	Salmonella_phage	2.7e-08	37.0
AZV77890.1\|1692147_1692702_-	hypothetical protein	NA	NA	NA	NA
AZV77891.1\|1692698_1693145_-	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	1.8e-07	34.7
AZV77892.1\|1693181_1693625_-	DUF1320 domain-containing protein	NA	NA	NA	NA
AZV77893.1\|1693732_1694119_-	hypothetical protein	NA	NA	NA	NA
AZV77894.1\|1694230_1695142_-\|head	head protein	L7P7Y9	Pseudomonas_phage	2.2e-84	52.8
AZV77895.1\|1695148_1696111_-	hypothetical protein	A0A2H4J9A2	uncultured_Caudovirales_phage	1.8e-57	41.7
AZV77896.1\|1696417_1697287_-	hypothetical protein	NA	NA	NA	NA
AZV77897.1\|1697515_1698637_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	1.7e-75	46.0
AZV77898.1\|1698629_1700171_-	DUF935 domain-containing protein	A0A2P9JZI9	Alteromonadaceae_phage	7.5e-130	47.5
AZV77899.1\|1700170_1701613_-\|terminase	terminase	A0A1B0T6K6	Pelagibaca_phage	4.0e-194	73.6
AZV77900.1\|1701937_1702501_-	DUF3486 family protein	A0A1B0T6K5	Pelagibaca_phage	3.9e-52	56.1
AZV77901.1\|1702503_1702803_-	hypothetical protein	NA	NA	NA	NA
AZV77902.1\|1702799_1703135_-	DUF2730 family protein	A0A1B0T6K8	Pelagibaca_phage	8.9e-20	47.9
AZV77903.1\|1703137_1703707_-	carboxylesterase	NA	NA	NA	NA
AZV77904.1\|1703697_1704309_-	peptidoglycan-binding protein	G8DH66	Emiliania_huxleyi_virus	1.4e-58	56.2
AZV80378.1\|1704391_1704691_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZV77905.1\|1704774_1705230_-	regulatory protein GemA	A0A1B0T6H1	Thiobacimonas_phage	1.4e-44	61.6
AZV80379.1\|1705229_1705463_-	hypothetical protein	NA	NA	NA	NA
AZV77906.1\|1705511_1706219_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	1.9e-72	60.9
AZV77907.1\|1706651_1707536_-	hypothetical protein	A0A0M3VI82	Ralstonia_phage	1.1e-05	37.9
AZV77908.1\|1707532_1707991_-	hypothetical protein	NA	NA	NA	NA
AZV77909.1\|1708323_1708587_-	hypothetical protein	NA	NA	NA	NA
AZV77910.1\|1708586_1708919_-	hypothetical protein	A0A1B0T6N2	Pelagibaca_phage	3.1e-17	48.0
AZV77911.1\|1708741_1709176_-	hypothetical protein	A0A1B0T6N2	Pelagibaca_phage	1.8e-25	60.9
AZV77912.1\|1709264_1709855_-	hypothetical protein	A0A1B0T6N2	Pelagibaca_phage	1.0e-39	65.3
AZV77913.1\|1709803_1710496_-	hypothetical protein	A0A1B1P6Z4	Rhodovulum_phage	3.3e-45	45.8
AZV77914.1\|1710455_1711364_-	chromosome partitioning protein ParB	A0A1B0T6M1	Pelagibaca_phage	2.3e-46	42.7
AZV77915.1\|1711387_1711819_-	hypothetical protein	NA	NA	NA	NA
AZV77916.1\|1712090_1712462_-	hypothetical protein	NA	NA	NA	NA
AZV80380.1\|1712682_1712982_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZV77917.1\|1713193_1713817_+	LuxR family transcriptional regulator	NA	NA	NA	NA
AZV77918.1\|1713878_1714562_+	hypothetical protein	NA	NA	NA	NA
AZV77919.1\|1714853_1716563_-	hypothetical protein	NA	NA	NA	NA
AZV77920.1\|1717272_1717560_-	hypothetical protein	NA	NA	NA	NA
AZV77921.1\|1717777_1718485_-	hypothetical protein	NA	NA	NA	NA
AZV77922.1\|1718666_1719224_-\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	6.9e-25	39.7
AZV77923.1\|1719213_1720290_-	ABC transporter ATP-binding protein	A4JWM1	Burkholderia_virus	6.9e-122	57.1
AZV77924.1\|1720286_1720469_-	hypothetical protein	NA	NA	NA	NA
AZV77925.1\|1720392_1720641_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AZV77926.1\|1720789_1722412_-\|tail	tail fiber domain-containing protein	A0A218MLC9	uncultured_virus	2.7e-13	43.0
AZV77927.1\|1722424_1726504_-	hypothetical protein	G8DH58	Emiliania_huxleyi_virus	2.9e-104	36.1
AZV77928.1\|1726500_1726917_-	hypothetical protein	NA	NA	NA	NA
AZV77929.1\|1726916_1727513_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	1.1e-39	48.4
AZV77930.1\|1727517_1728168_-	hypothetical protein	NA	NA	NA	NA
AZV77931.1\|1728167_1730576_-	hypothetical protein	A0A0B5A0F2	Paracoccus_phage	2.1e-09	47.2
AZV77932.1\|1730577_1730904_-	hypothetical protein	NA	NA	NA	NA
AZV77933.1\|1730939_1731269_-	hypothetical protein	NA	NA	NA	NA
AZV77934.1\|1731287_1732223_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	3.9e-81	48.4
AZV77935.1\|1732378_1732807_-	hypothetical protein	A0A1B0T6E9	Thiobacimonas_phage	3.2e-22	38.3
AZV77936.1\|1732806_1733235_-	DUF1320 domain-containing protein	A0A1B0T6F3	Thiobacimonas_phage	2.0e-32	48.6
AZV77937.1\|1733298_1733802_-	hypothetical protein	NA	NA	NA	NA
AZV77938.1\|1733816_1734794_-\|capsid	capsid protein	A0A219VH83	Ochrobactrum_phage	8.2e-82	49.2
AZV77939.1\|1734815_1735196_-	DUF2190 domain-containing protein	NA	NA	NA	NA
AZV77940.1\|1735192_1736293_-	hypothetical protein	M4SNT6	Rhodobacter_phage	2.2e-54	42.3
AZV77941.1\|1736409_1736901_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	3.6e-25	40.6
AZV77942.1\|1737193_1738180_-	hypothetical protein	NA	NA	NA	NA
AZV77943.1\|1738422_1739673_-\|head	phage head protein	M4SNU0	Rhodobacter_phage	1.0e-105	47.4
AZV77944.1\|1739665_1741315_-	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	9.0e-182	59.0
AZV77945.1\|1741314_1742994_-	hypothetical protein	M4SRU6	Rhodobacter_phage	9.6e-171	57.1
AZV77946.1\|1742990_1743548_-	DUF3486 family protein	A0A1B0T6G0	Thiobacimonas_phage	6.6e-36	54.4
AZV77947.1\|1743551_1743848_-	hypothetical protein	A0A1B0T6F4	Thiobacimonas_phage	6.6e-27	60.2
AZV77948.1\|1743844_1744210_-	DUF2730 family protein	A0A1B0T6K8	Pelagibaca_phage	8.2e-19	45.7
AZV77949.1\|1744212_1744782_-	carboxylesterase	NA	NA	NA	NA
AZV77950.1\|1744772_1745384_-	peptidoglycan-binding protein	G8DH66	Emiliania_huxleyi_virus	1.4e-58	56.2

DBSCAN-SWA_2

1749359 : 1755760

Thiobacimonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV77954.1\|1749359_1749623_-	hypothetical protein	A0A1B0T6G9	Thiobacimonas_phage	8.5e-10	49.4
AZV77955.1\|1749619_1750075_-	regulatory protein GemA	A0A1B0T6H1	Thiobacimonas_phage	1.3e-45	62.8
AZV80382.1\|1750074_1750308_-	hypothetical protein	NA	NA	NA	NA
AZV80383.1\|1750356_1750944_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	2.2e-69	64.6
AZV77956.1\|1751018_1751522_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZV77957.1\|1751954_1752839_-	hypothetical protein	A0A0M3VI82	Ralstonia_phage	1.9e-05	37.9
AZV77958.1\|1752835_1753579_-	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	2.0e-32	34.4
AZV77959.1\|1753627_1754938_-	hypothetical protein	A0A1B0T6N2	Pelagibaca_phage	2.6e-131	56.8
AZV77960.1\|1755025_1755760_-	hypothetical protein	A0A1B1P6Z4	Rhodovulum_phage	4.0e-57	46.7

DBSCAN-SWA_3

2465221 : 2496380

Paracoccus_phage(36.36%)

head,protease,tail,capsid,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV78537.1\|2465221_2466268_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AZV78538.1\|2466324_2469633_-	DUF3971 domain-containing protein	NA	NA	NA	NA
AZV78539.1\|2469809_2470274_+	peroxiredoxin	NA	NA	NA	NA
AZV78540.1\|2470650_2471505_+	DUF455 family protein	NA	NA	NA	NA
AZV80434.1\|2471695_2473027_+	M23 family peptidase	A8ATH6	Listeria_phage	1.1e-17	45.9
AZV78541.1\|2473016_2473541_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
AZV78542.1\|2473665_2474637_-	DUF3179 domain-containing protein	NA	NA	NA	NA
AZV78543.1\|2474773_2475322_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.1e-38	57.5
AZV78544.1\|2475314_2475821_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.0e-39	53.1
AZV78545.1\|2475953_2477144_+	phosphoglycerate kinase	NA	NA	NA	NA
AZV78546.1\|2477481_2477781_+	septum formation initiator family protein	NA	NA	NA	NA
AZV78547.1\|2477777_2478200_-	hypothetical protein	NA	NA	NA	NA
AZV78548.1\|2478370_2479360_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
AZV78549.1\|2479374_2480748_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
AZV78550.1\|2480760_2482065_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
AZV80435.1\|2482271_2483336_-	pyridoxal-phosphate dependent enzyme	A0A1X9I5K7	Streptococcus_phage	5.6e-68	45.2
AZV78551.1\|2483722_2484544_-	serine O-acetyltransferase	NA	NA	NA	NA
AZV78552.1\|2485024_2485315_-	hypothetical protein	NA	NA	NA	NA
AZV78553.1\|2485314_2489250_-	host specificity protein	A0A0B5A7K5	Paracoccus_phage	8.6e-239	40.3
AZV80436.1\|2489249_2489741_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	5.9e-28	42.2
AZV78554.1\|2489749_2490637_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	3.7e-57	40.1
AZV78555.1\|2490636_2491269_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	2.2e-56	50.0
AZV78556.1\|2491426_2492086_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	2.1e-12	35.6
AZV78557.1\|2492078_2492279_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
AZV78558.1\|2492275_2492596_-	gene transfer agent family protein	NA	NA	NA	NA
AZV78559.1\|2492599_2493013_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
AZV78560.1\|2493111_2493510_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AZV78561.1\|2493506_2493845_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AZV78562.1\|2493841_2494441_-	hypothetical protein	NA	NA	NA	NA
AZV78563.1\|2494606_2495788_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	6.9e-67	41.2
AZV78564.1\|2495822_2496380_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.2e-30	52.2

DBSCAN-SWA_4

2704946 : 2711946

Pelagibaca_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV78739.1\|2704946_2705855_+	chromosome partitioning protein ParB	A0A1B0T6M1	Pelagibaca_phage	3.1e-51	44.1
AZV78740.1\|2705859_2707989_+\|transposase	transposase	A0A1B0T6N2	Pelagibaca_phage	1.7e-196	51.7
AZV78741.1\|2708012_2708801_+	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	9.1e-39	35.3
AZV78742.1\|2708797_2709676_+	hypothetical protein	NA	NA	NA	NA
AZV78743.1\|2709672_2710062_+	hypothetical protein	A0A1B0T6M5	Pelagibaca_phage	6.5e-22	41.3
AZV78744.1\|2710051_2710558_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZV78745.1\|2710554_2711163_+	DUF3164 family protein	M4STB6	Rhodobacter_phage	5.1e-66	62.9
AZV78746.1\|2711233_2711494_+	hypothetical protein	NA	NA	NA	NA
AZV78747.1\|2711490_2711946_+	regulatory protein GemA	A0A1B0T6H1	Thiobacimonas_phage	2.2e-45	62.6

DBSCAN-SWA_5

4403784 : 4413561

Brazilian_cedratvirus(14.29%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZV80218.1\|4403784_4405380_+	phosphoglycerate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	4.8e-47	37.9
AZV80219.1\|4405534_4406128_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	3.2e-28	35.7
AZV80220.1\|4406163_4406895_+	serine/threonine protein phosphatase	K4JNE2	Caulobacter_virus	3.4e-32	38.7
AZV80572.1\|4407084_4408119_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	7.8e-14	64.7
AZV80221.1\|4408133_4409321_-	glycine C-acetyltransferase	G9E4Q1	Emiliania_huxleyi_virus	1.0e-33	28.0
AZV80222.1\|4409497_4409992_+	GAF domain-containing protein	NA	NA	NA	NA
AZV80223.1\|4410082_4410649_-	XRE family transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	4.3e-06	30.8
AZV80224.1\|4410760_4411936_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
AZV80225.1\|4412031_4413561_-	2-polyprenylphenol 6-hydroxylase	A0A2N9QVT9	Dishui_lake_phycodnavirus	6.7e-30	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage