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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029758 Clostridium sp. AWRP chromosome, complete genome 4 crisprs cas3,RT,WYL,csa3,DEDDh,cas8b1,PD-DExK,cas3HD 0 6 6 0

Results visualization

1. CP029758
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029758_1 2028394-2029679 Orphan II-B
19 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029758_2 2858169-2858278 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029758_3 3756415-3756969 Orphan III-B
8 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029758_4 3758507-3759463 Orphan III-B
14 spacers
RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029758_4 4.12|3759266|35|CP029758|PILER-CR,CRISPRCasFinder,CRT 3759266-3759300 35 HQ316603 Cyanophage S-SSM6b genomic sequence 21777-21811 8 0.771
CP029758_4 4.12|3759266|35|CP029758|PILER-CR,CRISPRCasFinder,CRT 3759266-3759300 35 NC_020875 Cyanophage S-SSM4 genomic sequence 60451-60485 8 0.771
CP029758_1 1.1|2028424|34|CP029758|CRISPRCasFinder,CRT 2028424-2028457 34 MG945904 UNVERIFIED: Microviridae sp. isolate 3036-1602, partial genome 1324-1357 9 0.735
CP029758_1 1.7|2028822|36|CP029758|CRISPRCasFinder,CRT 2028822-2028857 36 NZ_CP032531 Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence 36133-36168 9 0.75
CP029758_1 1.20|2028425|34|CP029758|PILER-CR 2028425-2028458 34 MG945904 UNVERIFIED: Microviridae sp. isolate 3036-1602, partial genome 1324-1357 9 0.735
CP029758_1 1.26|2028823|36|CP029758|PILER-CR 2028823-2028858 36 NZ_CP032531 Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence 36133-36168 9 0.75
CP029758_3 3.6|3756774|36|CP029758|CRISPRCasFinder,CRT,PILER-CR 3756774-3756809 36 NZ_AP014817 Geminocystis sp. NIES-3708 plasmid pGM02, complete sequence 39331-39366 10 0.722
CP029758_3 3.6|3756774|36|CP029758|CRISPRCasFinder,CRT,PILER-CR 3756774-3756809 36 LR214966 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12 2533-2568 10 0.722

1. spacer 4.12|3759266|35|CP029758|PILER-CR,CRISPRCasFinder,CRT matches to HQ316603 (Cyanophage S-SSM6b genomic sequence) position: , mismatch: 8, identity: 0.771

gttgctgaaggtgttgctaattttaatagtaatgg	CRISPR spacer
ggtgctgaaggtgttgctaatattgatttgtctgg	Protospacer
* ******************* **.**     ***

2. spacer 4.12|3759266|35|CP029758|PILER-CR,CRISPRCasFinder,CRT matches to NC_020875 (Cyanophage S-SSM4 genomic sequence) position: , mismatch: 8, identity: 0.771

gttgctgaaggtgttgctaattttaatagtaatgg	CRISPR spacer
ggtgctgaaggtgttgctaatattgatttgtctgg	Protospacer
* ******************* **.**     ***

3. spacer 1.1|2028424|34|CP029758|CRISPRCasFinder,CRT matches to MG945904 (UNVERIFIED: Microviridae sp. isolate 3036-1602, partial genome) position: , mismatch: 9, identity: 0.735

gagataaa---gtttgcatagattgtggaacttatta	CRISPR spacer
---atttatctgtttggatagattgtgtaacttatat	Protospacer
   **  *   ***** ********** *******  

4. spacer 1.7|2028822|36|CP029758|CRISPRCasFinder,CRT matches to NZ_CP032531 (Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence) position: , mismatch: 9, identity: 0.75

aatatttaaagataataatttatagggggtttataa	CRISPR spacer
tatatttaaagaaaacaatttatagggtataactga	Protospacer
 *********** **.*********** .*   *.*

5. spacer 1.20|2028425|34|CP029758|PILER-CR matches to MG945904 (UNVERIFIED: Microviridae sp. isolate 3036-1602, partial genome) position: , mismatch: 9, identity: 0.735

gagataaa---gtttgcatagattgtggaacttatta	CRISPR spacer
---atttatctgtttggatagattgtgtaacttatat	Protospacer
   **  *   ***** ********** *******  

6. spacer 1.26|2028823|36|CP029758|PILER-CR matches to NZ_CP032531 (Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence) position: , mismatch: 9, identity: 0.75

aatatttaaagataataatttatagggggtttataa	CRISPR spacer
tatatttaaagaaaacaatttatagggtataactga	Protospacer
 *********** **.*********** .*   *.*

7. spacer 3.6|3756774|36|CP029758|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014817 (Geminocystis sp. NIES-3708 plasmid pGM02, complete sequence) position: , mismatch: 10, identity: 0.722

gtatcaaaagaattaaaaaaagtgggtctacagtcg	CRISPR spacer
gcccccaaagaattaaaaaaagtgcgtttacatagt	Protospacer
*. .* ****************** **.****    

8. spacer 3.6|3756774|36|CP029758|CRISPRCasFinder,CRT,PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 10, identity: 0.722

gtatcaaaagaattaaaaaaagtgggtctacagtcg	CRISPR spacer
gggtaaaaagaattaaacaaagtggctctactccgt	Protospacer
* .* ************ ******* *****  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 897358 : 906174 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 1154445 : 1174253 31 Clostridium_phage(33.33%) transposase NA
DBSCAN-SWA_3 1230638 : 1239337 9 uncultured_Mediterranean_phage(42.86%) tRNA,transposase NA
DBSCAN-SWA_4 1982461 : 2039562 60 Clostridium_phage(46.88%) terminase,plate,integrase,transposase,head,protease,tail,portal,capsid attL 1990976:1991035|attR 2023131:2024659
DBSCAN-SWA_5 3343192 : 3416694 67 Clostridium_phage(44.74%) terminase,plate,transposase,tail,portal,capsid NA
DBSCAN-SWA_6 4432084 : 4457856 32 uncultured_Caudovirales_phage(26.32%) portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage