CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024171	Bordetella bronchiseptica strain D448 chromosome, complete genome	6 crisprs	csa3,DEDDh,DinG,cas3	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024171_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024171_1

998824-998908

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP024171_1

>merge|CP024171|1|998824-998908|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAGTGTGCCTGTCCCCGCGGGGACAG

>CP024171|1|1|998824-998908|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAG
TGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP024171.1\|AZW11334.1\|994625_995135_-\|phosphopantetheine-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
CP024171.1\|AZW11339.1\|999772_1000663_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP024171.1\|AZW11345.1\|1005553_1006081_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
CP024171.1\|AZW11344.1\|1004364_1005540_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|237587
CP024171.1\|AZW11330.1\|990195_992715_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|236772
CP024171.1\|AZW11335.1\|995155_995776_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
CP024171.1\|AZW11340.1\|1000659_1001430_-\|phosphonates-import-ATP-binding-protein-PhnC	unknown	unknown	gnl\|CDD\|213223
CP024171.1\|AZW11338.1\|998954_999776_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP024171.1\|AZW11337.1\|997118_998717_-\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|143624
CP024171.1\|AZW11346.1\|1006088_1006553_+\|N-utilization-substance-protein-B	unknown	unknown	gnl\|CDD\|234686
CP024171.1\|AZW11333.1\|994319_994571_-\|ferredoxin	unknown	unknown	gnl\|CDD\|319871
CP024171.1\|AZW11347.1\|1006592_1007609_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
CP024171.1\|AZW11336.1\|995845_997072_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
CP024171.1\|AZW11341.1\|1001432_1002440_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270291
CP024171.1\|AZW11331.1\|992711_993098_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281474
CP024171.1\|AZW11342.1\|1002588_1003416_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP024171.1\|AZW11343.1\|1003421_1004219_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|273651
CP024171.1\|AZW11329.1\|989428_989767_-\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP024171.1\|AZW11332.1\|993105_994323_-\|transporter	unknown	unknown	gnl\|CDD\|281578
CP024171.1\|AZW11328.1\|988925_989432_-\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176905

Protein	Function_ID	Function_description	E-value
CP024171.1\|AZW11334.1\|994625_995135_-\|phosphopantetheine-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.03384e-101
CP024171.1\|AZW11339.1\|999772_1000663_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.14802e-90
CP024171.1\|AZW11345.1\|1005553_1006081_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	4.04555e-65
CP024171.1\|AZW11344.1\|1004364_1005540_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
CP024171.1\|AZW11330.1\|990195_992715_+\|AsmA-family-protein	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	1.12008e-29
CP024171.1\|AZW11335.1\|995155_995776_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	2.15121e-57
CP024171.1\|AZW11340.1\|1000659_1001430_-\|phosphonates-import-ATP-binding-protein-PhnC	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.7095e-115
CP024171.1\|AZW11338.1\|998954_999776_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.08607e-97
CP024171.1\|AZW11337.1\|997118_998717_-\|inorganic-triphosphatase	gnl\|CDD\|143624	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized.	4.79262e-56
CP024171.1\|AZW11346.1\|1006088_1006553_+\|N-utilization-substance-protein-B	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.22823e-51
CP024171.1\|AZW11333.1\|994319_994571_-\|ferredoxin	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	1.53234e-06
CP024171.1\|AZW11347.1\|1006592_1007609_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	1.95453e-132
CP024171.1\|AZW11336.1\|995845_997072_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	9.59509e-176
CP024171.1\|AZW11341.1\|1001432_1002440_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270291	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.92107e-151
CP024171.1\|AZW11331.1\|992711_993098_+\|hypothetical-protein	gnl\|CDD\|281474	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.	7.15282e-08
CP024171.1\|AZW11342.1\|1002588_1003416_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.15813e-52
CP024171.1\|AZW11343.1\|1003421_1004219_-\|HAD-family-hydrolase	gnl\|CDD\|273651	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB. This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI\|TC0379 and OMNI\|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity].	7.51884e-15
CP024171.1\|AZW11329.1\|989428_989767_-\|transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.51065e-15
CP024171.1\|AZW11332.1\|993105_994323_-\|transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	3.72852e-112
CP024171.1\|AZW11328.1\|988925_989432_-\|polyketide-cyclase	gnl\|CDD\|176905	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.32648e-83

>CP024171.1|AZW11337.1|997118_998717_-|inorganic-triphosphatase
MSEQELKLHVPAAARAAVQQQIQQRQAARIRLHAMYFDTPGRELARARIAIRLRQEGRDWVQTLKMPGANAISRVEINHPRPGPVLDLSVYAGTEAQAALTAIKGELGLRYETDVQRLFCKVRGRHGTVELAYDTGVLRAGALELPISELEFELVSGRPAAIFAMARSWLQRHGLVLDARSKSERGDALAQLAHDLAAAPGEADDAARATRDQQAVAGFWAPRNAGAVKLDESMTPMQAMAAVAAECVDHIARNTAVLAEVDTLGVYRAGTPEHVHQLRVGVRRLRSAWRLFDGWVADPSETLAQGARTHFSAFGMARDQDVLADTIMPLLARAGMPALPAEAAPSNDNAQSLAADRAFQGWLLELLAWSLDVPPPPAPAATAEAAPASPTIIPLAPPAEAAPPALRKRLTGRLRRWHLKVIDEGLRFGALELEARHELRKRVKRLRYGLSFAESLLPAARLRTYRKQLARVQDLLGEINDLAVARDYYQAALQAHPQAWFAVGWIGARLDGLTPQAQEAFDQLARAKPFWK
>CP024171.1|AZW11336.1|995845_997072_+|signal-recognition-particle-docking-protein-FtsY
MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPPVAESQPPVAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD
>CP024171.1|AZW11335.1|995155_995776_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MKPSRLGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNWLNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAGAVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETAPAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH
>CP024171.1|AZW11334.1|994625_995135_-|phosphopantetheine-adenylyltransferase
MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFFTIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGMNRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQSAQGGA
>CP024171.1|AZW11333.1|994319_994571_-|ferredoxin
MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA
>CP024171.1|AZW11332.1|993105_994323_-|transporter
MNGADSASSPLAARRPVTGALSLSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRMPVVFAWSTPGAALLVTGLVGVPFDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPRFAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLVGLTGLAGLLAAPFGAHSVTLGAIIAALCAGPEAHADPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIMGGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA
>CP024171.1|AZW11331.1|992711_993098_+|hypothetical-protein
MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPS
>CP024171.1|AZW11330.1|990195_992715_+|AsmA-family-protein
MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQARYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLVVDHVTINGFKARVIRGKDGHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGTVSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVEGGNPRLDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTSSLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGGPFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTLKQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLKDQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAGDGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPAASGTIKIGQLVMRGLKAEQVAANIKLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTLSGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHDPTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFVARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLKEALTGGEGASGSPAKNIDKALKGILGK
>CP024171.1|AZW11329.1|989428_989767_-|transcriptional-regulator
MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMALPSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYLQDLKEQKR
>CP024171.1|AZW11328.1|988925_989432_-|polyketide-cyclase
MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPAPWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCYLEIVEGSRLVWTNALLPGFRPAGGGGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAHARNMQQAS
>CP024171.1|AZW11338.1|998954_999776_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMADLLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL
>CP024171.1|AZW11339.1|999772_1000663_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFETGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARNLMPAWASWPARALVALCRALHPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEAIEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARGLGSTTPLARKGEVDE
>CP024171.1|AZW11340.1|1000659_1001430_-|phosphonates-import-ATP-binding-protein-PhnC
MATSLRITGLVKEYRAGKPVLNGIDLDIAGQGLTAIIGPSGTGKSTLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVGLAGFADQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMELLTEQGSVNGIPVLVNIHDVELARRYANRIVGMSGGHVVYDGDGKGLDATMLKTIYGGESWLE
>CP024171.1|AZW11341.1|1001432_1002440_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKDLVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNAAEIEAMRSGRLHVGGFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQKLTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYDAAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYRFPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ
>CP024171.1|AZW11342.1|1002588_1003416_-|IclR-family-transcriptional-regulator
MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLRDLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVALPEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAAWLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDALSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN
>CP024171.1|AZW11343.1|1003421_1004219_-|HAD-family-hydrolase
MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAANRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDGAVGRIVEIFHEAGAQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLNIDSALQHTLFIGDSPNDEPMFKFFPISVGVANIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG
>CP024171.1|AZW11344.1|1004364_1005540_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MSAQISSLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAGCDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQTPWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLLDVLDTGASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFGLRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCAPPNLRND
>CP024171.1|AZW11345.1|1005553_1006081_+|6,7-dimethyl-8-ribityllumazine-synthase
MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGVDERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISRIALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDEDDEDEDFDDEEDDGR
>CP024171.1|AZW11346.1|1006088_1006553_+|N-utilization-substance-protein-B
MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR
>CP024171.1|AZW11347.1|1006592_1007609_+|thiamine-phosphate-kinase
MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVATSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAAFARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDVWVSGELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLLQDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQAIGQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPGRRP

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Crispr_ID: CP024171_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024171_2

1397209-1397298

Orphan

Consensus_repeat	Method
GGATCGGCGCCTGTCCCTGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024171_2

>merge|CP024171|2|1397209-1397298|CRISPRCasFinder
GGATCGGCGCCTGTCCCTGCGGGGACAGGCACGCCGGGGAAGTGGCAGGCGTGGAGGTGGATCGGTGCCTGTCCCTGCGGGGACAGGCAC

>CP024171|2|2|1397209-1397298|CRISPRCasFinder
GGATCGGCGCCTGTCCCTGCGGGGACAGGCAC	GCCGGGGAAGTGGCAGGCGTGGAGGT
GGATCGGTGCCTGTCCCTGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024171.1\|AZW11698.1\|1398893_1401578_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
CP024171.1\|AZW11693.1\|1394281_1395289_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
CP024171.1\|AZW11702.1\|1404878_1405898_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|270296
CP024171.1\|AZW11703.1\|1405916_1407302_+\|fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|273816
CP024171.1\|AZW11691.1\|1391794_1393261_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
CP024171.1\|AZW11692.1\|1393409_1394285_-\|hypothetical-protein	unknown	unknown	unknown
CP024171.1\|AZW11697.1\|1397800_1398694_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	unknown	unknown	gnl\|CDD\|119340
CP024171.1\|AZW11704.1\|1407298_1408675_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
CP024171.1\|AZW11688.1\|1389694_1390600_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
CP024171.1\|AZW11705.1\|1408743_1409739_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP024171.1\|AZW11701.1\|1403739_1404741_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
CP024171.1\|AZW11706.1\|1409769_1411155_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377179
CP024171.1\|AZW11689.1\|1390609_1391041_-\|hypothetical-protein	unknown	unknown	unknown
CP024171.1\|AZW11696.1\|1396557_1397148_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP024171.1\|AZW11699.1\|1401602_1402976_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|238627
CP024171.1\|AZW11690.1\|1391279_1391783_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
CP024171.1\|AZW11687.1\|1386236_1389698_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377502
CP024171.1\|AZW11700.1\|1403009_1403729_+\|hydrolase	unknown	unknown	gnl\|CDD\|238497
CP024171.1\|AZW11695.1\|1396126_1396432_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
CP024171.1\|AZW11694.1\|1395757_1396063_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321

Protein	Function_ID	Function_description	E-value
CP024171.1\|AZW11698.1\|1398893_1401578_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
CP024171.1\|AZW11693.1\|1394281_1395289_-\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	2.61515e-175
CP024171.1\|AZW11702.1\|1404878_1405898_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.63137e-114
CP024171.1\|AZW11691.1\|1391794_1393261_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.56285e-93
CP024171.1\|AZW11703.1\|1405916_1407302_+\|fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	9.05494e-57
CP024171.1\|AZW11697.1\|1397800_1398694_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	gnl\|CDD\|119340	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to form acetate and oxalate, an important pathway to produce oxalate in filamentous fungi. 2-methylisocitrate lyase (MICL) cleaves 2-methylisocitrate to pyruvate and succinate, part of the methylcitrate cycle for the alpha-oxidation of propionate.	5.98205e-95
CP024171.1\|AZW11704.1\|1407298_1408675_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.59585e-95
CP024171.1\|AZW11688.1\|1389694_1390600_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.77569e-65
CP024171.1\|AZW11705.1\|1408743_1409739_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	8.03152e-150
CP024171.1\|AZW11701.1\|1403739_1404741_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	4.74612e-64
CP024171.1\|AZW11706.1\|1409769_1411155_-\|hypothetical-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	5.06371e-64
CP024171.1\|AZW11696.1\|1396557_1397148_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.75019e-12
CP024171.1\|AZW11699.1\|1401602_1402976_+\|dihydroorotase	gnl\|CDD\|238627	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.	1.43144e-141
CP024171.1\|AZW11690.1\|1391279_1391783_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	1.07728e-77
CP024171.1\|AZW11687.1\|1386236_1389698_+\|hypothetical-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	2.0871e-36
CP024171.1\|AZW11700.1\|1403009_1403729_+\|hydrolase	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	9.42667e-40
CP024171.1\|AZW11695.1\|1396126_1396432_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000216222
CP024171.1\|AZW11694.1\|1395757_1396063_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.00044027

>CP024171.1|AZW11696.1|1396557_1397148_+|TetR/AcrR-family-transcriptional-regulator
MDTPSTNTTRDQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSVHYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLGGMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALFATVQGCLLGARLFQRPPDLREALGALYVQCGASPAH
>CP024171.1|AZW11695.1|1396126_1396432_+|DUF4148-domain-containing-protein
MNRIATALILSASVFGVAQAGELDYPPAIESANTLSHAQVQAELQAARTQGLMAAGEQDYPITAYAAASTASREQVRDELAAARAQGLTESGELAYPPVAG
>CP024171.1|AZW11694.1|1395757_1396063_+|DUF4148-domain-containing-protein
MNRIATALILSASVFGVAQAGELDYPPAIESASALSHAQVQDELLAARAAGQMNSAELAYPPVVEQAATQVSRSQIRQELSAAKARGLDASGELDYPPVAG
>CP024171.1|AZW11693.1|1394281_1395289_-|biotin-synthase-BioB
MHTAYIPVSTPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAARAAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQLKAAGLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQLANMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRRLLQRLGMRAEGLPCAAGQA
>CP024171.1|AZW11692.1|1393409_1394285_-|hypothetical-protein
MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAALCWLLLRPDAQALRQAMQGAPVLAALAVLLPTVFVAMARSVRHAGIVKSDAAQRLSLFIPLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWPLAVWAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALGLANFGNILTYVRAHQSLPDHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALALAAIAAMLPW
>CP024171.1|AZW11691.1|1391794_1393261_+|MFS-transporter
MLYAAGHRGPRPVLPQADIRVPMLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHRLIIRVGHIRAFVACAAVATSMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGPLTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPERRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSSPAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPGADSESTSAPQAGEQAAPDDTAARRTGT
>CP024171.1|AZW11690.1|1391279_1391783_+|peroxiredoxin
MTIKVGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAFVMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDAATMLAQA
>CP024171.1|AZW11689.1|1390609_1391041_-|hypothetical-protein
MTRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGAARTCGASAPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGAEMMADMRASGVDGCTGALASFQRERTMTYDEMKQAIAEATDGLPEDQPAD
>CP024171.1|AZW11688.1|1389694_1390600_+|dienelactone-hydrolase-family-protein
MTHRRFPMTDADPHFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDVCRRLARLGYQAVAPELFARYGDPTGYTDIGRLRAEVVDKAGDRQVLADLDAAAAWAAANGGNSSRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLKAPVLGAYGGKDAGIPLSDVDRMRLALAKGPRAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQRMLDWFGQHGLAA
>CP024171.1|AZW11687.1|1386236_1389698_+|hypothetical-protein
MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALTQDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWFAPVVDSLVVRQPRIALVREDVTRFNFSDIQQKVADMTAQSPPEPEPEAGPPRFSLNNMVLEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVARPFDTVPSSTLDVSFAGLELEKWADAWPLPLPVKLERALLDSDLQVLFEQPKDAAPRIKVVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRSLYVGEVELWSPQIQTRRYADQRLNWLDIAQKLQKLGAGDAPAKPAAAPAPTPAPAPAPAPAPAQASASATPAAAQAAAAPQASAAAAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLTMDSTIDGSWLRAKGPLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQARVRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPVSVKQFEARFDRLAPDAQPSPFTLKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSARGDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFAANLGDITLDDFYGRVLLNAEGRLNVMDLVAEPGQAGGSITQDTQTRARAAAPAKPGPMPDIAIGSVTLKGGKMTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAGRVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDRALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFSVGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPEAESRIETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTAGRGKKPAPDGVEVAPAERAKYLEEVYDDTKIEGKPRNFIGMAKSIPAEQMEALLRGAAPLGADDLRKLADARAQAVYEKLQAEGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK
>CP024171.1|AZW11697.1|1397800_1398694_-|carboxyvinyl-carboxyphosphonate-phosphorylmutase
MSSAAKKFRDLLNSAEFIVSPGVYDGYSLRLVQAAGFKTACTSGAALSNALLGIADIGVMGLMENVNHCRMLARSVDIPLTADADTGYGNPVNVFHTVQMFEEAGVAGVNLEDQVSPKRCGHMPGKDVIPLEEMVKKIEAACLARRDDNFVIIARTDALAVEGIEGAARRAQAYAAAGADVIFPDAVRTAEDIGRIVEAAGVPVSVNMGFGVRQRPTTPLIPLPELKRLGVKRISLPRMLPAAAIHGMRSALEEMKQVIATGTPAHRPDLLVGIEDIMELMGYEAMRALEKKLTTLD
>CP024171.1|AZW11698.1|1398893_1401578_+|aconitate-hydratase-AcnA
MLSRMTNRGYMNASFLHLGTPIHYADVAAAAARSGVELASLPYVIRILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAALRDAVQAGGGDPARVDTRVPVDLIVDHSLQVDAWSTADAVRRNLDAEFARNEQRYRFLKWAQQAFDGLRVFAPGTGIIHQVNLEKLATVVSTSEHGGQQWACPDFVIGGDSHTPMVNGLGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEGVTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDAQTLDYLRLTGRTAEHIELVRAYCQANGLWRADPAASAVRYARVVRIDLAQAEPCMSGPRRPQDRLPIGQLAEDFRQRLPRPAAEGGFGLDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAARQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLQDLEALGFGVIGYGCTTCGGKSGPLAPEVAQDIADNQWVVCTVLSGNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREPIATDADGQPVWLHELWPGEAQLDEIMARALSPQGFRRVWGLEPEGASQWRALAEVSGQHWQWDDSNYLVEPPFFKAPAQQFGQRLAGARVLGLYGDSLTTDHISPSGEIPAEAPAGRYLLGLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGEQLSIYDASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMGVIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQALTESERELLLQGGIPASVLADYLQ
>CP024171.1|AZW11699.1|1401602_1402976_+|dihydroorotase
MARPLDTLLANTLVFLEGQGLVPGSIGIADGRIAVIGSHGQDMPAARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRESFDAVRARAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGFTDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFLEAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDRSPAGAYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPGTGMILPILLHEGYHRRQVPLETLMRVASGASARIYGMPGKGRIAVGNDADLVIVDPDLEKTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIADEARQTPGGRYLRRL
>CP024171.1|AZW11700.1|1403009_1403729_+|hydrolase
MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYNFCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDSGVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDVDTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIPTAEVADYLKALPAREAG
>CP024171.1|AZW11701.1|1403739_1404741_+|GTP-binding-protein
MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGLDQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGLAEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQVDVQAYAEAKTQLLMADTVVLTKLDLHPEARHLAAWLGELNPTARVYENSLPDDTLARLLLDPAADRPAPAAQGHPSAGAPQASALRHLLAYGIHSVTVDVPDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFEGQGRMAVHAVHHVFSAPEPAGAVPPALVGKLVFIVRDMEREEVLHAVRHLSGAPPADAA
>CP024171.1|AZW11702.1|1404878_1405898_+|LacI-family-transcriptional-regulator
MNFFNFGFQPGAAHTRRRVTATVLALAAWAALPVQQAAAQPQWPQRPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGYTLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALAKKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITGFPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGIFAPKGTPAPVVQKIAADIKTVMASPAVVEKMQKLGLTPSAVTLADFEAELDRERASWATAVKISGAKVQ
>CP024171.1|AZW11703.1|1405916_1407302_+|fumarate-reductase-flavoprotein-subunit
MEFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACGNTVLSSGSIPAAGTRFQEAAGVHDTPRMFQEDLLTIAGEHEAMDLTRALTETSARLVEWLVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTGLIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKSLLARFVPEVAAAPYGGGTGSEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGRRFGDESIGYSAFAALELARTGPFWVIADTQVRDVTAAGQEEYAELVAHGGVLEGCLEELCARTGIDAAGLAATLQAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDIDGRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGEEQA
>CP024171.1|AZW11704.1|1407298_1408675_+|MmgE/PrpD-family-protein
MTHDFKGSLMAGATPTRALADWCAALRDSRPSEAVLRESARHVLDTLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAVACHALEMDDGNREGSIHPATTVVPAVLALGWQQEADYLAFLCAVVAGFEVAVSIAETLHPHASQRGFQTTPVAGVVGAAAACATLLGLDGAGIESAMGLAASASGGLFAYLAGGGNVKKFHPGHAAREGLRAALMARQGVAQGPRGVIEGRAGLLQAFGGITQWDGSRARERAAPAIARSYLKPYPCCRHIHPAIDAVMALKARAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWVMALACVDGEVTLAGFSEAARTRPDINALAARVSVAQTQECDSLYPASGPARVTLRLRSGERLSEWVADPLGSADRPLADEALDRKAAEAFGLAFPAARVRALIGQLRRLEPWPLAELN
>CP024171.1|AZW11705.1|1408743_1409739_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MSRKFLSALRNAGMCGAMMLGGLSAAPAAAADAWPGQPIRMVVPFAPGGAVDTLGRLVAKQLTDVLGQTVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGNITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVDSVAELIDYARKHPDKLNYGSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQRGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVNQVMQSAPVEQKLQSMAAYFQPTTRAQFQTLIHDDTAKWARVIKAAGIKLN
>CP024171.1|AZW11706.1|1409769_1411155_-|hypothetical-protein
MNPALPATPSDRFAAGLAEVCQFVSTLSWDAIPDAVRHRAVDVLCDDLAAMAAAAPEPELRRYAALLTARAGTAESPLLSPALPRVGRMEAASWNALAGNWCELDEGFRLAICHAGIYTLPALLAEATATRARLRDVLTALTGAYELVTRCAMSFHVMPPPVHGHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGAVNGMQCADWAECGFGGAPASMEEVCAGIVKASLREGEITRELGTRWSLSHGYQKLYSCCQHGHSAVQACLALRADPGFEPQRIRAIRLDTHALALTLDTVHPTTTLGARFSMPHMVAAALALGTGSAAAFSQSTLSDPAVAALREKVRMRLADAPMPAPHDRPAWLEVELDDGQVLRASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALARQA

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Crispr_ID: CP024171_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024171_3

1411918-1412047

Orphan

Consensus_repeat	Method
GGAGGTGGATCGGTGCCTGTCCCTGCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024171_3

>merge|CP024171|3|1411918-1412047|CRISPRCasFinder
GGGGGGCCGTTCGCGCCTGTCCCTGCGGGAAGTGGCAGGCGCGGAGGTGGATCGGTGCCTGTCCCTGCGGGGACGGGCACGCCGGGGAAGTGGCAGGCGTGGAGGTGGATCGGTGCCTGTCCCTGCGGGG

>CP024171|3|3|1411918-1412047|CRISPRCasFinder
GGGGGGCCGTTCGCGCCTGTCCCTGCGGGA	AGTGGCAGGCGCGGAGGTGGATCGGTGCCTGTCCCTGCGGGGACGGGCACGCCGGGGAAGTGGCAGGCGT
GGAGGTGGATCGGTGCCTGTCCCTGCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP024171.1\|AZW11716.1\|1423307_1423652_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
CP024171.1\|AZW11698.1\|1398893_1401578_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
CP024171.1\|AZW11713.1\|1419484_1420213_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239483
CP024171.1\|AZW11702.1\|1404878_1405898_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|270296
CP024171.1\|AZW11708.1\|1413750_1415394_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
CP024171.1\|AZW11710.1\|1416418_1416892_-\|endoribonuclease-YbeY	unknown	unknown	gnl\|CDD\|234575
CP024171.1\|AZW11703.1\|1405916_1407302_+\|fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|273816
CP024171.1\|AZW15128.1\|1412746_1413754_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381328
CP024171.1\|AZW11704.1\|1407298_1408675_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
CP024171.1\|AZW11714.1\|1420375_1421311_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
CP024171.1\|AZW11705.1\|1408743_1409739_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP024171.1\|AZW11701.1\|1403739_1404741_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
CP024171.1\|AZW11706.1\|1409769_1411155_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377179
CP024171.1\|AZW11709.1\|1415390_1416293_-\|magnesium/cobalt-efflux-protein	unknown	unknown	gnl\|CDD\|226910
CP024171.1\|AZW11712.1\|1417900_1419328_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
CP024171.1\|AZW11699.1\|1401602_1402976_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|238627
CP024171.1\|AZW11707.1\|1411151_1411850_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP024171.1\|AZW11711.1\|1416881_1417904_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
CP024171.1\|AZW11715.1\|1421360_1423241_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
CP024171.1\|AZW11700.1\|1403009_1403729_+\|hydrolase	unknown	unknown	gnl\|CDD\|238497

Protein	Function_ID	Function_description	E-value
CP024171.1\|AZW11716.1\|1423307_1423652_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	5.53938e-43
CP024171.1\|AZW11698.1\|1398893_1401578_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
CP024171.1\|AZW11713.1\|1419484_1420213_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239483	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.	1.32814e-75
CP024171.1\|AZW11702.1\|1404878_1405898_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.63137e-114
CP024171.1\|AZW11708.1\|1413750_1415394_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	9.77593e-170
CP024171.1\|AZW11710.1\|1416418_1416892_-\|endoribonuclease-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	3.20839e-53
CP024171.1\|AZW11703.1\|1405916_1407302_+\|fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	9.05494e-57
CP024171.1\|AZW15128.1\|1412746_1413754_+\|aldo/keto-reductase	gnl\|CDD\|381328	cd19102, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	5.15335e-143
CP024171.1\|AZW11704.1\|1407298_1408675_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.59585e-95
CP024171.1\|AZW11714.1\|1420375_1421311_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	4.20457e-144
CP024171.1\|AZW11705.1\|1408743_1409739_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	8.03152e-150
CP024171.1\|AZW11701.1\|1403739_1404741_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	4.74612e-64
CP024171.1\|AZW11706.1\|1409769_1411155_-\|hypothetical-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	5.06371e-64
CP024171.1\|AZW11709.1\|1415390_1416293_-\|magnesium/cobalt-efflux-protein	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	2.08279e-109
CP024171.1\|AZW11712.1\|1417900_1419328_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
CP024171.1\|AZW11699.1\|1401602_1402976_+\|dihydroorotase	gnl\|CDD\|238627	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.	1.43144e-141
CP024171.1\|AZW11707.1\|1411151_1411850_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.67018e-41
CP024171.1\|AZW11711.1\|1416881_1417904_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	4.19811e-141
CP024171.1\|AZW11715.1\|1421360_1423241_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
CP024171.1\|AZW11700.1\|1403009_1403729_+\|hydrolase	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	9.42667e-40

>CP024171.1|AZW11707.1|1411151_1411850_-|GntR-family-transcriptional-regulator
MKEKPITAIDKNGIDAPLTDVVYQRMLDGIYAGGLPPGGVINEVELAREFGVSRGPVREAVRRLQGIQIVTREPYMKARVVAMSAESALELFQMRMGLEGVACFLATQRMSDADIAQLQRDMDAHYQSWAARREGAPNGEERHFDLHERIVRASGNKRIIAALCEDLYHLLRIYRRHSGSALERKDDAYDEHWQIVRAIASRDARLAESLMRSHIERAANHVASQLREPAIQ
>CP024171.1|AZW11706.1|1409769_1411155_-|hypothetical-protein
MNPALPATPSDRFAAGLAEVCQFVSTLSWDAIPDAVRHRAVDVLCDDLAAMAAAAPEPELRRYAALLTARAGTAESPLLSPALPRVGRMEAASWNALAGNWCELDEGFRLAICHAGIYTLPALLAEATATRARLRDVLTALTGAYELVTRCAMSFHVMPPPVHGHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGAVNGMQCADWAECGFGGAPASMEEVCAGIVKASLREGEITRELGTRWSLSHGYQKLYSCCQHGHSAVQACLALRADPGFEPQRIRAIRLDTHALALTLDTVHPTTTLGARFSMPHMVAAALALGTGSAAAFSQSTLSDPAVAALREKVRMRLADAPMPAPHDRPAWLEVELDDGQVLRASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALARQA
>CP024171.1|AZW11705.1|1408743_1409739_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MSRKFLSALRNAGMCGAMMLGGLSAAPAAAADAWPGQPIRMVVPFAPGGAVDTLGRLVAKQLTDVLGQTVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGNITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVDSVAELIDYARKHPDKLNYGSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQRGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVNQVMQSAPVEQKLQSMAAYFQPTTRAQFQTLIHDDTAKWARVIKAAGIKLN
>CP024171.1|AZW11704.1|1407298_1408675_+|MmgE/PrpD-family-protein
MTHDFKGSLMAGATPTRALADWCAALRDSRPSEAVLRESARHVLDTLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAVACHALEMDDGNREGSIHPATTVVPAVLALGWQQEADYLAFLCAVVAGFEVAVSIAETLHPHASQRGFQTTPVAGVVGAAAACATLLGLDGAGIESAMGLAASASGGLFAYLAGGGNVKKFHPGHAAREGLRAALMARQGVAQGPRGVIEGRAGLLQAFGGITQWDGSRARERAAPAIARSYLKPYPCCRHIHPAIDAVMALKARAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWVMALACVDGEVTLAGFSEAARTRPDINALAARVSVAQTQECDSLYPASGPARVTLRLRSGERLSEWVADPLGSADRPLADEALDRKAAEAFGLAFPAARVRALIGQLRRLEPWPLAELN
>CP024171.1|AZW11703.1|1405916_1407302_+|fumarate-reductase-flavoprotein-subunit
MEFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACGNTVLSSGSIPAAGTRFQEAAGVHDTPRMFQEDLLTIAGEHEAMDLTRALTETSARLVEWLVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTGLIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKSLLARFVPEVAAAPYGGGTGSEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGRRFGDESIGYSAFAALELARTGPFWVIADTQVRDVTAAGQEEYAELVAHGGVLEGCLEELCARTGIDAAGLAATLQAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDIDGRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGEEQA
>CP024171.1|AZW11702.1|1404878_1405898_+|LacI-family-transcriptional-regulator
MNFFNFGFQPGAAHTRRRVTATVLALAAWAALPVQQAAAQPQWPQRPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGYTLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALAKKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITGFPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGIFAPKGTPAPVVQKIAADIKTVMASPAVVEKMQKLGLTPSAVTLADFEAELDRERASWATAVKISGAKVQ
>CP024171.1|AZW11701.1|1403739_1404741_+|GTP-binding-protein
MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGLDQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGLAEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQVDVQAYAEAKTQLLMADTVVLTKLDLHPEARHLAAWLGELNPTARVYENSLPDDTLARLLLDPAADRPAPAAQGHPSAGAPQASALRHLLAYGIHSVTVDVPDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFEGQGRMAVHAVHHVFSAPEPAGAVPPALVGKLVFIVRDMEREEVLHAVRHLSGAPPADAA
>CP024171.1|AZW11700.1|1403009_1403729_+|hydrolase
MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYNFCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDSGVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDVDTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIPTAEVADYLKALPAREAG
>CP024171.1|AZW11699.1|1401602_1402976_+|dihydroorotase
MARPLDTLLANTLVFLEGQGLVPGSIGIADGRIAVIGSHGQDMPAARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRESFDAVRARAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGFTDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFLEAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDRSPAGAYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPGTGMILPILLHEGYHRRQVPLETLMRVASGASARIYGMPGKGRIAVGNDADLVIVDPDLEKTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIADEARQTPGGRYLRRL
>CP024171.1|AZW11698.1|1398893_1401578_+|aconitate-hydratase-AcnA
MLSRMTNRGYMNASFLHLGTPIHYADVAAAAARSGVELASLPYVIRILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAALRDAVQAGGGDPARVDTRVPVDLIVDHSLQVDAWSTADAVRRNLDAEFARNEQRYRFLKWAQQAFDGLRVFAPGTGIIHQVNLEKLATVVSTSEHGGQQWACPDFVIGGDSHTPMVNGLGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEGVTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDAQTLDYLRLTGRTAEHIELVRAYCQANGLWRADPAASAVRYARVVRIDLAQAEPCMSGPRRPQDRLPIGQLAEDFRQRLPRPAAEGGFGLDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAARQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLQDLEALGFGVIGYGCTTCGGKSGPLAPEVAQDIADNQWVVCTVLSGNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREPIATDADGQPVWLHELWPGEAQLDEIMARALSPQGFRRVWGLEPEGASQWRALAEVSGQHWQWDDSNYLVEPPFFKAPAQQFGQRLAGARVLGLYGDSLTTDHISPSGEIPAEAPAGRYLLGLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGEQLSIYDASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMGVIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQALTESERELLLQGGIPASVLADYLQ
>CP024171.1|AZW15128.1|1412746_1413754_+|aldo/keto-reductase
MRITRVGFGAWAIGGPGWSVGWGAQDDGESIRAIRHAVNRGINWIDTAAVYGLGHSESLVGRALAGMPPSERPYVFTKGGLLGSPADPMAKPRRIGAPDSLRREVEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAGKVRHVGLSNHNLAQVQAAEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSGLLSGAFSAERAAALPEGDWRARNAEFMAPRLAANLEFADALKPIAQRHGASVGAIAVAWALAWPGVTGAIAGARSAEQVDGWLGAATLELDSDDMRQIADALARTGVGGGPLLPPPDEAALALTARP
>CP024171.1|AZW11708.1|1413750_1415394_-|apolipoprotein-N-acyltransferase
MSPAGKGPAWRQPAILAAAGAAHALSFAPDPLPAWSLAPVQVIALAVAAHASLQAPSARRALARGWLFAMFSFSLGLYWLYVSMHDYGGLAAPLAAAGVLALSAFLALFPGLACAAARWLCPPHWDASPPARARRTLYTAATWAACWAALEWLRAVVLTGFPWLNIGYAHVDSPLAGWAPLLGVHGMALLAAFAAAALAGLWQSASGRIDSRQALAAGVALLLAGAGWLLGQFSWSRPEGKPLHLRLVQGNVEQSQKFDPALLETGLRRHLELASLPPRPGEPKPDLIILPETVLPVFQDQLPASVWDAWIEVARRADTRIAMGVPLHTQPDGATGHRYTNSVIGFDASTPVEQLRTGTTAMRYDKQHLVPWGEYIPPGFRWFVDMLDIPLGDFDRGATRQPSFDIAGQRIAFNICYEDLFGPELLPALQDGPDGRPGATIMANVSNLGWFGNTWALRQHLQIGRLRTMETARPMVAATNTGITAAIDARGRVAAALPAGRAGVLPVAVQGMTGLTPYARFGDKPALALIGLLLIAAAARGRRPRQP
>CP024171.1|AZW11709.1|1415390_1416293_-|magnesium/cobalt-efflux-protein
MSAWTMSDPYPATEAHAQRAAKSSPKSLLDRLLSLVRREPEDREGIKAILEAAHERELLDAESYAMIKGALAVSERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLTASTDISHFNATFATDLPDDEYDSVGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRALWLRVRRNAGAQPPASAAE
>CP024171.1|AZW11710.1|1416418_1416892_-|endoribonuclease-YbeY
MATELSLSVQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGAELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARGDIVVCVPVLAREAREQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA
>CP024171.1|AZW11711.1|1416881_1417904_-|PhoH-family-protein
MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGVKLARRGSRVTIEGEQAELAGRALRRFHEQATHRALSVDDIQLGLVEIGVGRPVEVQADPRELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGKTWLAVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFERVQRLFEKQTIEIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITGDPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTSRDVVRHPLVARIVDAYDQAAANGD
>CP024171.1|AZW11712.1|1417900_1419328_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MQETTVKRDGASPSDAGTPATTAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYHGAMGDSGEVADFAMLLEYVHEIPGIERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPGVPRLIGHMVDVVVTHAHTNSLRGRVAGIERDTSGAE
>CP024171.1|AZW11713.1|1419484_1420213_+|phosphatase-PAP2-family-protein
MTAEPITAFPPPKSGLPGQGLAGLLRRCLVPVLLLLGCAAWLDRPLTLWINRSVSPQVNTVFDYIGNLGDSGTYVALGLAAYILGLQGMLRGWAVPWGWTCEKIARAGMLLLATLTAGGLVTWVLKNVVARARPEVLLDDGIYGMGRMFAGNPFNSFPSSHTQTAFAVAAVLGILAPRWRWPALALAALVAISRVINRDHYLSDVCAAALIAVVAAYAIKPYVLSPSCTWPLRAPWRWRKRG
>CP024171.1|AZW11714.1|1420375_1421311_-|protein-translocase-subunit-SecF
MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQSETVMSALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVAGVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKASVQEVINSAITQTISRTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMGVKREDLVKPVKKDGDEVEIA
>CP024171.1|AZW11715.1|1421360_1423241_-|protein-translocase-subunit-SecD
MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVVLTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN
>CP024171.1|AZW11716.1|1423307_1423652_-|preprotein-translocase-subunit-YajC
MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMKRQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSYITVEVSELADKPVEVVMQKTAVSAVLPKGTIKAL

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Crispr_ID: CP024171_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024171_5

3221532-3221655

Orphan

Consensus_repeat	Method
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024171_5

>merge|CP024171|5|3221532-3221655|CRISPRCasFinder
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAACGCCCCCACGCTGCGCCCGCTGCGCGGGCTTGCTGCCCCCCAAGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA

>CP024171|5|5|3221532-3221655|CRISPRCasFinder
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	CGCCCCCACGCTGCGCCCGCTGCGCGGGCTTGCTGCCCCCCA
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP024171.1\|AZW13286.1\|3221079_3221343_-\|hypothetical-protein	unknown	unknown	unknown
CP024171.1\|AZW13291.1\|3226123_3226948_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
CP024171.1\|AZW13279.1\|3213787_3214633_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227300
CP024171.1\|AZW13294.1\|3228885_3229581_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163429
CP024171.1\|AZW13285.1\|3219766_3221083_-\|hypothetical-protein	unknown	unknown	unknown
CP024171.1\|AZW13288.1\|3221858_3222554_-\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
CP024171.1\|AZW13295.1\|3229856_3230738_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
CP024171.1\|AZW13293.1\|3228007_3228727_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163429
CP024171.1\|AZW13278.1\|3212880_3213777_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224975
CP024171.1\|AZW13282.1\|3217651_3218497_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
CP024171.1\|AZW13287.1\|3221700_3221832_-\|entericidin	unknown	unknown	gnl\|CDD\|227797
CP024171.1\|AZW15213.1\|3224901_3226086_-\|heme-biosynthesis-operon-protein-HemX	unknown	unknown	gnl\|CDD\|235899
CP024171.1\|AZW13283.1\|3218493_3219150_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184854
CP024171.1\|AZW13277.1\|3211858_3212659_+\|hypothetical-protein	unknown	unknown	unknown
CP024171.1\|AZW13292.1\|3226944_3227889_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
CP024171.1\|AZW13290.1\|3223302_3224898_-\|protoheme-IX-synthesis-protein	unknown	unknown	gnl\|CDD\|273126
CP024171.1\|AZW13289.1\|3222737_3223274_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
CP024171.1\|AZW13281.1\|3216242_3217655_-\|secretion-protein	unknown	unknown	gnl\|CDD\|333965
CP024171.1\|AZW13284.1\|3219146_3219770_-\|hypothetical-protein	unknown	unknown	unknown
CP024171.1\|AZW13280.1\|3214629_3216246_-\|secretion-protein	unknown	unknown	gnl\|CDD\|227297

Protein	Function_ID	Function_description	E-value
CP024171.1\|AZW13291.1\|3226123_3226948_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	2.8885e-45
CP024171.1\|AZW13279.1\|3213787_3214633_-\|pilus-assembly-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.18806e-34
CP024171.1\|AZW13294.1\|3228885_3229581_-\|hypothetical-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	4.02139e-69
CP024171.1\|AZW13283.1\|3218493_3219150_-\|hypothetical-protein	gnl\|CDD\|184854	PRK14852, PRK14852, hypothetical protein; Provisional.	0.00208036
CP024171.1\|AZW13288.1\|3221858_3222554_-\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.66779e-90
CP024171.1\|AZW13293.1\|3228007_3228727_-\|hypothetical-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	3.14656e-77
CP024171.1\|AZW13278.1\|3212880_3213777_-\|hypothetical-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	9.08185e-19
CP024171.1\|AZW13295.1\|3229856_3230738_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
CP024171.1\|AZW13287.1\|3221700_3221832_-\|entericidin	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	8.70055e-07
CP024171.1\|AZW15213.1\|3224901_3226086_-\|heme-biosynthesis-operon-protein-HemX	gnl\|CDD\|235899	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed.	4.52015e-54
CP024171.1\|AZW13289.1\|3222737_3223274_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	2.68623e-113
CP024171.1\|AZW13292.1\|3226944_3227889_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	8.72133e-165
CP024171.1\|AZW13290.1\|3223302_3224898_-\|protoheme-IX-synthesis-protein	gnl\|CDD\|273126	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein. Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General].	5.51639e-71
CP024171.1\|AZW13281.1\|3216242_3217655_-\|secretion-protein	gnl\|CDD\|333965	pfam00263, Secretin, Bacterial type II and III secretion system protein.	4.23385e-53
CP024171.1\|AZW13282.1\|3217651_3218497_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	3.27424e-49
CP024171.1\|AZW13280.1\|3214629_3216246_-\|secretion-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.81087e-139

>CP024171.1|AZW13286.1|3221079_3221343_-|hypothetical-protein
MSVKQRQLGQGMIEYIIVVALVAVAAIAVYQLFGQVVRSQTAAMARELAGEDGSAQARAAQSAAGRAASQTRARSLKSFTGNAQGAK
>CP024171.1|AZW13285.1|3219766_3221083_-|hypothetical-protein
MRPTRAAVTRQAGQALALGLALMALAGMAWLALYGLGQRAGARAQLLRATDAAAYSGAVVQARALNLLAYIHRAQVGHQVALAHLASLAAWARFAQTQAARRTAQNPPVALIGLLFGPRAARGYGAAHDALAGDLMQAYAAHDELAHRVLQQAADTLARDARATRDATMRAVLRAHYPQGDDGLTLEVLRDDWPGYLRRVTGTSARGLRGWAQRAAGYFDFLQPRDFTREGNWIVSPRCPTRRHELRRRGVTWLDRDGRWGASDTLSFHAVRSNRWIGCYFREYAMGWGLAADSGATRAGPHVLRAPEDFSQQDFWRWVHRHTSWNLLGGRHNPLALSYAASRRLSPGGRGLPAVYEPASSSEAAVGFEIRTQRREEGIVLSARAAGQSHFSLPPGTSVARGRPDVLFLPYWQARRAAADAALPMAARRTVRGPESRP
>CP024171.1|AZW13284.1|3219146_3219770_-|hypothetical-protein
MRGAAFSRRQRGQALAEALPLLAMLLLAWAAVAWLGTLRHQALRLGQHSRVAAFMAAAAAPSAPRTATLARQAGLAGRTAADGMPALLARDWLQVDTRLLHAQAAEPAAMPGGLLREGAIAAALRGVTVLAIGPGHASDARAGNDRLARSVAGWQLAHRAAAPAVAATRRRVRPVEAAWGLRDAGQDWLRTWADMASADGAVLRRQP
>CP024171.1|AZW13283.1|3218493_3219150_-|hypothetical-protein
MTPAHLAASASAWLHLPPGVVAAALAGQIQMFGVPAEVRVFHAPQGIDALLAHFATRHAELRDLTVLPGLAVLAGGAGDCTHTISLAPQSGGVEGVAARLCWPRGLPSRQPLADVLLPPHARLRLDVATRDGPVSVAQQVWHWRAAGPTETARWAVRREARLRASGWRLQGAAGPACRCGAPQTWLRAGPQGRERLSLQPALHANGCGMRLLHIGGAP
>CP024171.1|AZW13282.1|3217651_3218497_-|Flp-pilus-assembly-protein-CpaB
MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLEAGTPLHDELVAVRDMPQAWLPAGALLPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQLTMPLLAGSKVLALDPADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFAAPSAREAGDLPALLGMPRDAAPRAAVPVLYGDRLDAPAGALPGDTEAVMP
>CP024171.1|AZW13281.1|3216242_3217655_-|secretion-protein
MSMRSRLPLHARGWLPWMAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLAAAGVTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIATLAQRYPEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEGNGTTLFKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPSDSFLQRRALLGQMQLDQAFPEAPRLGTGAAADQSADWSRPGGAGSQWRQPPSADAQEGAP
>CP024171.1|AZW13280.1|3214629_3216246_-|secretion-protein
MNVLELALHFEDGARRRMRLAAPVTIGRGAQCALRIANWRVGRVHARLSCLDGAVVLEDLGTLGGTSVNGLRVATHAPVLPDDEIVIGPCLIRVSACCTGSAPSPAPAALPAGGASRGEDLDAALQQSLVLLPHRRRLHAALLEALDLRRRDVSAMSDRMLRAQAEQRLVELVGQDGELPEGIDRAQLCRAVLDEAVGLGPLEPLLADGGISEIMVNRHDEIYVERAGRLQRHAAAFSSEQAVRWVVERIVAPLGRRIDDSSPMVDARLPDGSRVNAVIAPIAIRGVSLTIRKFPRQRPGMADLLAAGSLSEPMARFLLQCVHARKNLLVSGGTGSGKTTLLNILSNAIPEGERIVTIEDAAELRLDHAHLVALEARPANAEGRGRVDIRDLVRNALRMRPDRIVVGECRGAEAFDMLTAMNTGHEGSLTTLHANTPRDALARLEAMTLMAGLDLPLPVVREHIAASIDIIVQQARMADGRRIVTAIVEIAGMESGRIQTQELFRYDARHGFIAGDAPVLADGAWARGPFTGQPEPAP
>CP024171.1|AZW13279.1|3213787_3214633_-|pilus-assembly-protein
MIWLAMGMAMAAAAWLAWRVLAWSGPAARRYRAVYTQQAGAHLSEVFLFVDPAQLWAAALAMAAAGAAAAWVFSGSAWLAAVAAVALLRLPHLLLGAARRRRLRQLERQLPGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGALPPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV
>CP024171.1|AZW13278.1|3212880_3213777_-|hypothetical-protein
MWLWLAASVAGVAAGWACLALLRGWCGAGWAAACGPEPAPGPPAWRLPRIWRCCRPWLGPLLPWCDRLLSWRMRAVIERAIVRAGCDGLVRPCEVAALSLWMAWLGGVVAVTAASLADGWRAWLPLAPAACAAGAWPALWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQGGL
>CP024171.1|AZW13277.1|3211858_3212659_+|hypothetical-protein
MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATYTPLVGPLLFVALMPSITLMTLSACKHVEAGRVMLPSMWLQPLKKPGVFKKLFLMGMLYVGLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFWHAPVLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLAGTLQVPVTIIAGGVLYCSFYPAYTSVFGVNDAHAGLDNSDSAHA
>CP024171.1|AZW13287.1|3221700_3221832_-|entericidin
MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK
>CP024171.1|AZW13288.1|3221858_3222554_-|FAA-hydrolase-family-protein
MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTGREDPFFFCKPADAILSVADGATGEMPYPPKTANLHYEMELVVVLGKGGRDLTVEQADECVWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIWLDVNGERKQSSDISQMIWNIPESVAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEGLGELRVRIA
>CP024171.1|AZW13289.1|3222737_3223274_-|inorganic-diphosphatase
MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRFMLTAMHYPCNYGYIPQTLSEDGDPADVLVLTPFPIQIGAVVRCRAIGVLEMDDESGGDAKLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVDAAHEEIVRSAERYAKGQA
>CP024171.1|AZW13290.1|3223302_3224898_-|protoheme-IX-synthesis-protein
MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTVLLLVAAFVTLYIGLRLLAWLVAIPDRLRAWRGRRAQERDHELLERGWIGLLEGRFAQAEKDLSKLFDQTKVRSRRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEATATVSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFMLARGLLRRNAIGKAEAEQLIDSAGAARLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGEASEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKAETWLQQRPADTDLLTALGLLCLNGQLWGQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPVLAADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIADAPPEVEPGAVDYVLDPDARAAGEHEPASAVAPEPVSVPPRTAIDIEDYFDSAPIPAAAIEAPVSSYRAGGDDEQPAKPGGAGSSAGPASGDKA
>CP024171.1|AZW15213.1|3224901_3226086_-|heme-biosynthesis-operon-protein-HemX
MTDNTSATPPGTVPGTPGTAAADEAVASQSRKGKGVNSTLVTALIIVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLGAELTQSRNDMREALALAQAQSGKVAELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLITIASQQLRLAGNVSNAIVALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQSARIDRLVALVGRAPLLVPDAAAPGVTAVPQANEAVPASVDPGADLPADAAWWQRWQAEIASWPGRAGSALAHELGDLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSMLMRQPAVWKSELDAVAATLAQYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAALRAAGFNADGQQD
>CP024171.1|AZW13291.1|3226123_3226948_-|uroporphyrinogen-III-synthase
MTGRSGPRGGLPMSQIAILTRPQGRNGALAQRLHEAGWQTLCLPALRIEPLPPENGAVPLPRDYDLVVFVSGNAARLYLEQLGERGQLPWPAGAVAATVGPASARALLDSGQFGADTTVLHPAETAPTHDSEALWALLRARPALPRRALLVRGTQGRDWLADRLAAAGVEVSRHAVYRRRPAPWAQEGRQRLRDWARAGERPTWLLTSGEGIDALVQGLREEQLLDWWLQGRFVVTHPVLAERLRALAGGGADAPMVKNCMPADEAIFATFVAA
>CP024171.1|AZW13292.1|3226944_3227889_-|hydroxymethylbilane-synthase
MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTRGDQILDRTLSKVGGKGLFVKELETALLDGRADLAVHSLKDVPVDLHAPFELSCVLERADPRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKLDNGDYAAIVLAAAGLERLGLAARIRALLEPADSLPAAGQGALGIEILQGRADVRAMLAPLGDAATLACVTAERAVSRMLGGSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPRDQAQAIGESAARDLLADGADAILAELLPTSPAP
>CP024171.1|AZW13293.1|3228007_3228727_-|hypothetical-protein
MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLAPKQRMQGILWGTAGAIILRVVLIAFALTLLNIPFLKVVGGLLLVWIGVKLLVPEDEGHDSIKGGTSIVAAVKTIIIADFVMSLDNVIAIAGAAQNAHADHQIGLVVFGLVVSVPIIIWGSTLVLKLIDRFPMVVTFGAALLGWIAGGMLITDVFVVRQFGEQPSAVKIGVEIAGALLVVLLGRWLASRKTASKESVNESA
>CP024171.1|AZW13294.1|3228885_3229581_-|hypothetical-protein
MELSSAAFWIALLQIIWVNILLSGDNAVVIALAARSLPPDQQKKAIVVGSAAAIVMRIVLTLVAAKLLLLPWLKLIGAALLVYIGVSLLLPEGEDDGAEKGHGSLLVAIRTIMIADLVMSLDNVVAVAAAAMGDTTLLVLGLAISIPLVIFGSALLLKVIERFPIIVWVGAALLGFIAGELLVGDPALEESVARIDTILGVTQHDFALMVGAIGAILVLALGKIFQARQRA
>CP024171.1|AZW13295.1|3229856_3230738_-|succinate--CoA-ligase-subunit-alpha
MSILINKDTKVITQGITGKTGQFHTRMCREYANGKAAFVAGVNPKKAGEDFEGVPIYANVKDAKADTGATVSVIYVPPAGAAAAIWEAVEAELDLVICITEGIPVRDMLEVKNRMQAMNSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGIVSRSGTLTYEAVAQVTELGLGQSSAVGIGGDPINGLKHVDVLKLFNDDPDTDAVIMIGEIGGPDEVNAAQWAKDNMKKPVVGFIAGVTAPAGKRMGHAGALISGGADTADAKLEVMEACGIRTTRNPSEMGKLLKSVL

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Crispr_ID: CP024171_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024171_6

4409976-4410069

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024171_6

>merge|CP024171|6|4409976-4410069|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>CP024171|6|6|4409976-4410069|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024171.1\|AZW14340.1\|4410155_4410626_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP024171.1\|AZW14334.1\|4402996_4403968_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
CP024171.1\|AZW14345.1\|4414407_4415331_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
CP024171.1\|AZW14341.1\|4410714_4411059_-\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
CP024171.1\|AZW14346.1\|4415336_4415792_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226610
CP024171.1\|AZW14344.1\|4413658_4414318_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP024171.1\|AZW14337.1\|4406240_4406996_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223930
CP024171.1\|AZW14339.1\|4407621_4409745_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
CP024171.1\|AZW15260.1\|4416811_4417120_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
CP024171.1\|AZW14338.1\|4407106_4407625_+\|methyltransferase	unknown	unknown	gnl\|CDD\|224204
CP024171.1\|AZW14331.1\|4398431_4399625_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180775
CP024171.1\|AZW14348.1\|4417079_4418699_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
CP024171.1\|AZW14343.1\|4412747_4413662_+\|EamA/RhaT-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP024171.1\|AZW14347.1\|4415788_4416892_-\|ChbG/HpnK-family-deacetylase	unknown	unknown	gnl\|CDD\|212118
CP024171.1\|AZW14332.1\|4400710_4401883_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
CP024171.1\|AZW14342.1\|4411158_4412559_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP024171.1\|AZW14335.1\|4404034_4404820_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181723
CP024171.1\|AZW14336.1\|4404812_4406045_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
CP024171.1\|AZW15259.1\|4396748_4398383_+\|ATP-dependent-acyl-CoA-ligase	unknown	unknown	gnl\|CDD\|341257
CP024171.1\|AZW14333.1\|4402008_4402986_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106

Protein	Function_ID	Function_description	E-value
CP024171.1\|AZW14340.1\|4410155_4410626_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
CP024171.1\|AZW14334.1\|4402996_4403968_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
CP024171.1\|AZW14345.1\|4414407_4415331_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.97616e-21
CP024171.1\|AZW14341.1\|4410714_4411059_-\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
CP024171.1\|AZW14346.1\|4415336_4415792_-\|hypothetical-protein	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.35069e-54
CP024171.1\|AZW14344.1\|4413658_4414318_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.25651e-32
CP024171.1\|AZW14337.1\|4406240_4406996_-\|hypothetical-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
CP024171.1\|AZW14339.1\|4407621_4409745_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
CP024171.1\|AZW15260.1\|4416811_4417120_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.61408e-10
CP024171.1\|AZW14338.1\|4407106_4407625_+\|methyltransferase	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	9.09964e-45
CP024171.1\|AZW14331.1\|4398431_4399625_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	9.96891e-175
CP024171.1\|AZW14348.1\|4417079_4418699_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.9702e-50
CP024171.1\|AZW14343.1\|4412747_4413662_+\|EamA/RhaT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	8.05606e-10
CP024171.1\|AZW14347.1\|4415788_4416892_-\|ChbG/HpnK-family-deacetylase	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.3947e-92
CP024171.1\|AZW14332.1\|4400710_4401883_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	8.96527e-84
CP024171.1\|AZW14342.1\|4411158_4412559_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.52472e-110
CP024171.1\|AZW14335.1\|4404034_4404820_-\|enoyl-CoA-hydratase	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	2.06175e-156
CP024171.1\|AZW14336.1\|4404812_4406045_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
CP024171.1\|AZW15259.1\|4396748_4398383_+\|ATP-dependent-acyl-CoA-ligase	gnl\|CDD\|341257	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins.	1.26816e-168
CP024171.1\|AZW14333.1\|4402008_4402986_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60

>CP024171.1|AZW14339.1|4407621_4409745_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>CP024171.1|AZW14338.1|4407106_4407625_+|methyltransferase
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAVLRRLEKRIAARDDKRVVAQPPP
>CP024171.1|AZW14337.1|4406240_4406996_-|hypothetical-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>CP024171.1|AZW14336.1|4404812_4406045_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>CP024171.1|AZW14335.1|4404034_4404820_-|enoyl-CoA-hydratase
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>CP024171.1|AZW14334.1|4402996_4403968_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>CP024171.1|AZW14333.1|4402008_4402986_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>CP024171.1|AZW14332.1|4400710_4401883_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDTAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>CP024171.1|AZW14331.1|4398431_4399625_-|acetyl-CoA-C-acyltransferase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAEQVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA
>CP024171.1|AZW15259.1|4396748_4398383_+|ATP-dependent-acyl-CoA-ligase
MADFTLDDIKQRSMAEITAMQARRHGEKAFLHFLPRDERISYAGFDRRSSAVGRGLKAHGVQAGAHVGLILDNCPEMILAVFALAKIGAVWVPINTAAKGKLLVYYLDFADITTLIVHEKYLAPIAACLHELPRLQRIVVVDDGSGHAAQQAPRAIRYAALEQDGREDQAFDADPWQLGALLFTSGTTGPSKAVMWPQAGVNVWAAQNAMARWVAPDDVEYVCLPLFHANALLNSTWTAFVAGATVALTDRYSTTRFWSEIRQCGATRFNSLGAIVNFLWTQPPTPQDRDHKVRLCSMAPVPPYVHEFEARFGVKVFTGYGLSDYCLAASTRLDDPAEKAFSCGKPRPGIDLRIVDDNDIELPAGQTGEIALRSHETWSTASGYYKMPEATLQARRNFLFHTGDRGYLDADGYLYFVDRKKDSIRRRGENISSQEVEAVLTSHPEVVNAAVYPVRGDLPEDEVGASVLLRPGSALSYQDLTRYCVENMSYYMVPRFLEFVDALPLTESGKIEKFKLKQRAEQRPSPLWDREAAGIVVSRASARA
>CP024171.1|AZW14340.1|4410155_4410626_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>CP024171.1|AZW14341.1|4410714_4411059_-|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>CP024171.1|AZW14342.1|4411158_4412559_-|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>CP024171.1|AZW14343.1|4412747_4413662_+|EamA/RhaT-family-transporter
MSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>CP024171.1|AZW14344.1|4413658_4414318_+|LysE-family-translocator
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>CP024171.1|AZW14345.1|4414407_4415331_+|alpha/beta-hydrolase
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>CP024171.1|AZW14346.1|4415336_4415792_-|hypothetical-protein
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>CP024171.1|AZW14347.1|4415788_4416892_-|ChbG/HpnK-family-deacetylase
MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>CP024171.1|AZW15260.1|4416811_4417120_+|GtrA-family-protein
MEWAGLPPLGANVVGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP
>CP024171.1|AZW14348.1|4417079_4418699_-|phospholipid-carrier-dependent-glycosyltransferase
MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLCVLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRGLRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRELALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCDGTPTGG

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Crispr_ID: CP024171_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024171_7

4682279-4682362

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024171_7

>merge|CP024171|7|4682279-4682362|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGGGGTGCCTGTCCCCGCGGGGACAG

>CP024171|7|7|4682279-4682362|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP024171.1\|AZW14576.1\|4678322_4678895_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
CP024171.1\|AZW14582.1\|4682416_4683205_-\|MetQ/NlpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|224381
CP024171.1\|AZW14579.1\|4680429_4681032_+\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|237567
CP024171.1\|AZW14577.1\|4678891_4679830_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
CP024171.1\|AZW14590.1\|4691636_4692200_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
CP024171.1\|AZW14581.1\|4681768_4682260_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
CP024171.1\|AZW14587.1\|4687456_4688512_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|376860
CP024171.1\|AZW14578.1\|4679896_4680430_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|173148
CP024171.1\|AZW15270.1\|4675582_4676335_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
CP024171.1\|AZW14591.1\|4692186_4693071_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
CP024171.1\|AZW14574.1\|4676506_4677379_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|235450
CP024171.1\|AZW14589.1\|4689670_4691623_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
CP024171.1\|AZW14573.1\|4674285_4675572_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
CP024171.1\|AZW14585.1\|4685164_4685740_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
CP024171.1\|AZW14588.1\|4688537_4689674_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
CP024171.1\|AZW14575.1\|4677375_4678326_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
CP024171.1\|AZW14586.1\|4685952_4687446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279307
CP024171.1\|AZW14583.1\|4683466_4684369_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
CP024171.1\|AZW14580.1\|4681028_4681772_+\|phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|182907
CP024171.1\|AZW14584.1\|4684368_4685115_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|319791

Protein	Function_ID	Function_description	E-value
CP024171.1\|AZW14576.1\|4678322_4678895_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	5.36172e-54
CP024171.1\|AZW14582.1\|4682416_4683205_-\|MetQ/NlpA-family-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.17353e-136
CP024171.1\|AZW14579.1\|4680429_4681032_+\|phosphoheptose-isomerase	gnl\|CDD\|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	1.25469e-125
CP024171.1\|AZW14577.1\|4678891_4679830_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	9.54075e-109
CP024171.1\|AZW14590.1\|4691636_4692200_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.62373e-19
CP024171.1\|AZW14581.1\|4681768_4682260_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.58284e-41
CP024171.1\|AZW14587.1\|4687456_4688512_+\|lactate-dehydrogenase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.11307e-125
CP024171.1\|AZW14578.1\|4679896_4680430_+\|YraN-family-protein	gnl\|CDD\|173148	PRK14685, PRK14685, hypothetical protein; Provisional.	1.91773e-89
CP024171.1\|AZW15270.1\|4675582_4676335_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.39738e-12
CP024171.1\|AZW14591.1\|4692186_4693071_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	9.0892e-90
CP024171.1\|AZW14574.1\|4676506_4677379_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.18739e-149
CP024171.1\|AZW14589.1\|4689670_4691623_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP024171.1\|AZW14573.1\|4674285_4675572_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	4.18466e-10
CP024171.1\|AZW14585.1\|4685164_4685740_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.59741e-107
CP024171.1\|AZW14588.1\|4688537_4689674_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.23854e-160
CP024171.1\|AZW14575.1\|4677375_4678326_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	3.79567e-55
CP024171.1\|AZW14586.1\|4685952_4687446_+\|hypothetical-protein	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.68833e-115
CP024171.1\|AZW14583.1\|4683466_4684369_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.71108e-158
CP024171.1\|AZW14580.1\|4681028_4681772_+\|phospholipid-binding-protein	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.20064e-42
CP024171.1\|AZW14584.1\|4684368_4685115_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.14842e-46

>CP024171.1|AZW14581.1|4681768_4682260_+|TlpA-family-protein-disulfide-reductase
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG
>CP024171.1|AZW14580.1|4681028_4681772_+|phospholipid-binding-protein
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVVYLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAAQKAPIESGAAPAGSGSNGVEAIPIK
>CP024171.1|AZW14579.1|4680429_4681032_+|phosphoheptose-isomerase
MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>CP024171.1|AZW14578.1|4679896_4680430_+|YraN-family-protein
MTDTATRLAFARAAQAQRRLHRRPPASPRASPGARDGGSPTQRRGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLLPVLLRRHWPGAPPPVRFDVVAFEAGRPHWLRGAFWLAEHAPAQGRRGQDAQGWRVR
>CP024171.1|AZW14577.1|4678891_4679830_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQDVLSPAPGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAGFPPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQP
>CP024171.1|AZW14576.1|4678322_4678895_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNPPSEQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPTAAGWTPDAAHPALRQAAAELEQWFAGRRRAFEVDMQPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAHEGHRYLSRAARARRVSTTQMELPFGAA
>CP024171.1|AZW14575.1|4677375_4678326_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLGIIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQLASNAPTPPRPATGAGSGIYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>CP024171.1|AZW14574.1|4676506_4677379_+|RNase-adaptor-protein-RapZ
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>CP024171.1|AZW15270.1|4675582_4676335_-|cytochrome-c
MLAFKSDLRIAMRAWRAACGVLAAAAGMLAMSQAVAQGEAALRPDTMAARVAACTACHGEQGRAGPDGYYPRLAGKPQDYLYHQLLNFRDARRQYPPMAHLLNGLPDAYLREMAAYFAGQDVPYPPPARVEASAALVERGRLLVREGDPARAIPSCASCHGASLAGVAPAIPGLLGLPRDYLVAQIGSWQNGLRRAAEPDCMAQVSLKLTPEDIGAVSAWLAGQPVGHPYTPQPAGSLTLPLECGSQAGH
>CP024171.1|AZW14573.1|4674285_4675572_-|cytochrome-c
MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSADDFWQALHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHELASPYDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGSTQYLSGDDALAIGTYLKSLPAAAPPPARRGAPSATVMELGGKLYGQHCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVSYVRNSWGNQAGAVTPLDVKRTRESGAGR
>CP024171.1|AZW14582.1|4682416_4683205_-|MetQ/NlpA-family-lipoprotein
MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKPALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDIAENPKKLKFRELEAAMLPRSLDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF
>CP024171.1|AZW14583.1|4683466_4684369_+|acetylglutamate-kinase
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGFVGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>CP024171.1|AZW14584.1|4684368_4685115_+|pyrimidine-5'-nucleotidase
MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMRMHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLLLRRRPLRG
>CP024171.1|AZW14585.1|4685164_4685740_+|nucleoid-occlusion-factor-SlmA
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVAMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>CP024171.1|AZW14586.1|4685952_4687446_+|hypothetical-protein
MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLIFVVLRLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLMLVSIMLLLFWSTEGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQTRIPWGTVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIHLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM
>CP024171.1|AZW14587.1|4687456_4688512_+|lactate-dehydrogenase
MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRARLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLCFAGPLPGGRPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADPPGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQDLGAADALPRA
>CP024171.1|AZW14588.1|4688537_4689674_-|rod-shape-determining-protein-RodA
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>CP024171.1|AZW14589.1|4689670_4691623_-|penicillin-binding-protein-2
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGATDGPMQERRQ
>CP024171.1|AZW14590.1|4691636_4692200_-|rod-shape-determining-protein-MreD
MERTKVSVPARRKLGTPSNVEPERLARPAHGVFVWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV
>CP024171.1|AZW14591.1|4692186_4693071_-|rod-shape-determining-protein-MreC
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANTPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGAD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024171_2	2.1\|1397241\|26\|CP024171\|CRISPRCasFinder	1397241-1397266	26	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	62762-62787	4	0.846
CP024171_2	2.1\|1397241\|26\|CP024171\|CRISPRCasFinder	1397241-1397266	26	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	315533-315558	4	0.846
CP024171_2	2.1\|1397241\|26\|CP024171\|CRISPRCasFinder	1397241-1397266	26	NC_017588	Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence	183427-183452	4	0.846
CP024171_2	2.1\|1397241\|26\|CP024171\|CRISPRCasFinder	1397241-1397266	26	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2721627-2721652	4	0.846

1. spacer 2.1|1397241|26|CP024171|CRISPRCasFinder matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .**********

2. spacer 2.1|1397241|26|CP024171|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .**********

3. spacer 2.1|1397241|26|CP024171|CRISPRCasFinder matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .**********

4. spacer 2.1|1397241|26|CP024171|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
gccggggaagtggcaggcggcgcagt	Protospacer
*******************  * .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2294452 : 2302518

Moraxella_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZW12480.1\|2294452_2295040_+	thymidylate synthase	A0A1X9I5T8	Streptococcus_phage	2.1e-16	46.8
AZW12481.1\|2295058_2295442_-	thioredoxin	V9SJ74	Achromobacter_phage	8.1e-09	25.8
AZW12482.1\|2295577_2296603_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AZW12483.1\|2296808_2298101_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.2e-66	36.0
AZW12484.1\|2298235_2299276_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.3e-92	51.6
AZW12485.1\|2299320_2299968_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AZW12486.1\|2300093_2300852_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	51.2
AZW15173.1\|2300926_2301616_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-32	46.9
AZW12487.1\|2301633_2302518_+	peptidase	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

DBSCAN-SWA_2

3592823 : 3615192

Pseudomonas_phage(18.18%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZW13607.1\|3592823_3596780_-	hypothetical protein	A0A0B5A1N2	Achromobacter_phage	1.2e-219	41.1
AZW13608.1\|3596772_3597162_-	hypothetical protein	A0A0G3EYJ9	Achromobacter_phage	3.3e-34	49.2
AZW15223.1\|3597158_3597692_-	DUF1833 domain-containing protein	A0A0B5A6T7	Achromobacter_phage	1.2e-47	56.5
AZW13609.1\|3597758_3598118_-	hypothetical protein	NA	NA	NA	NA
AZW13610.1\|3598127_3600728_-\|tail	phage tail tape measure protein	A0A1V0E821	Vibrio_phage	4.5e-103	36.4
AZW13611.1\|3600755_3601046_-	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	6.3e-14	41.9
AZW13612.1\|3601063_3601393_-	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	3.8e-15	43.1
AZW13613.1\|3601405_3601921_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	1.2e-23	38.3
AZW13614.1\|3602175_3602676_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	7.5e-31	45.1
AZW13615.1\|3602683_3603106_-	hypothetical protein	NA	NA	NA	NA
AZW13616.1\|3603102_3603501_-	hypothetical protein	S4SIM9	Salmonella_phage	2.1e-23	44.9
AZW13617.1\|3603497_3603893_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
AZW13618.1\|3603892_3604093_-	hypothetical protein	NA	NA	NA	NA
AZW13619.1\|3604094_3604577_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	2.6e-12	38.5
AZW13620.1\|3604639_3604897_-	hypothetical protein	NA	NA	NA	NA
AZW13621.1\|3604906_3605875_-	hypothetical protein	R9TJ64	Synechococcus_phage	6.6e-124	71.7
AZW13622.1\|3605901_3606504_-	hypothetical protein	R9TF81	Synechococcus_phage	5.5e-28	44.3
AZW15224.1\|3606627_3606870_-	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	1.9e-16	51.9
AZW15225.1\|3606875_3607928_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	6.3e-96	50.8
AZW13623.1\|3607956_3609375_-	DUF4055 domain-containing protein	R9TF43	Synechococcus_phage	1.2e-97	41.5
AZW13624.1\|3609377_3610655_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	9.2e-150	64.2
AZW13625.1\|3610641_3611013_-	DNA-binding protein	A0A090DCM3	Clostridium_phage	6.2e-06	36.7
AZW13626.1\|3611091_3611319_-	hypothetical protein	NA	NA	NA	NA
AZW13627.1\|3611331_3611772_-	hypothetical protein	NA	NA	NA	NA
AZW13628.1\|3611768_3611972_-	hypothetical protein	NA	NA	NA	NA
AZW13629.1\|3611968_3612652_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	4.9e-33	50.0
AZW13630.1\|3612648_3613590_-	hypothetical protein	A0A0U4B0G9	Pseudomonas_phage	8.5e-52	36.5
AZW15226.1\|3613586_3613958_-	hypothetical protein	NA	NA	NA	NA
AZW13631.1\|3613954_3614779_-	hypothetical protein	R9TJW3	Synechococcus_phage	1.9e-07	45.3
AZW13632.1\|3614778_3615192_-	hypothetical protein	A4JX58	Burkholderia_virus	8.1e-15	39.1

DBSCAN-SWA_3

4291367 : 4298698

Ralstonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZW14239.1\|4291367_4292357_+	hypothetical protein	A0A2P0VPH6	Ralstonia_phage	1.3e-10	43.7
AZW14240.1\|4293362_4293635_+	hypothetical protein	NA	NA	NA	NA
AZW14241.1\|4293732_4294158_+	HNH endonuclease	S5YLC4	Mycobacterium_phage	1.0e-12	36.6
AZW14242.1\|4294154_4294379_+	hypothetical protein	NA	NA	NA	NA
AZW14243.1\|4294375_4294543_+	hypothetical protein	NA	NA	NA	NA
AZW14244.1\|4294545_4294887_+	hypothetical protein	NA	NA	NA	NA
AZW14245.1\|4295019_4295775_+	single-stranded DNA-binding protein	B5WZW4	Pseudomonas_phage	1.5e-46	59.6
AZW14246.1\|4295774_4296410_+	exonuclease	R9TG13	Synechococcus_phage	2.9e-19	35.6
AZW14247.1\|4296412_4296859_+	single-stranded DNA-binding protein	D7RWG9	Brochothrix_phage	1.7e-05	36.6
AZW14248.1\|4297128_4297362_+	hypothetical protein	NA	NA	NA	NA
AZW14249.1\|4297421_4297811_+	hypothetical protein	NA	NA	NA	NA
AZW14250.1\|4297792_4298698_+	hypothetical protein	U6C6B8	Ralstonia_phage	5.8e-13	56.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024171

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection