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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025347 Bordetella pertussis strain C569 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 28 0

Results visualization

1. CP025347
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025347_1 251639-251723 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025347_2 434130-434223 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025347_3 998446-998540 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025347_4 1894886-1895013 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025347_5 3430401-3430510 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 122073 110 Planktothrix_phage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_2 135157 : 207634 60 Bacillus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_3 216713 : 333432 103 uncultured_Caudovirales_phage(12.5%) transposase,tRNA,protease NA
DBSCAN-SWA_4 392954 : 451511 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 622897 : 723361 111 uncultured_Caudovirales_phage(13.79%) transposase,tRNA,terminase,tail NA
DBSCAN-SWA_6 856194 : 905458 40 Vibrio_phage(33.33%) transposase,holin NA
DBSCAN-SWA_7 915070 : 980010 60 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_8 999410 : 1050375 41 Enterococcus_phage(25.0%) transposase NA
DBSCAN-SWA_9 1062593 : 1119975 46 uncultured_Mediterranean_phage(37.5%) transposase,tRNA,holin NA
DBSCAN-SWA_10 1320045 : 1388532 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_11 1797095 : 1845110 44 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_12 1848503 : 1909708 53 Lake_Baikal_phage(21.43%) transposase,tRNA,protease NA
DBSCAN-SWA_13 1937491 : 1978182 36 Klosneuvirus(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_14 1989386 : 2050180 58 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 2300066 : 2361414 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_16 2382205 : 2453359 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_17 2494299 : 2556146 60 Planktothrix_phage(14.29%) transposase,tRNA,protease NA
DBSCAN-SWA_18 2687025 : 2727694 43 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_19 2783159 : 2856029 59 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_20 2859172 : 2925982 49 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_21 2956368 : 2995557 38 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_22 3233571 : 3268409 36 Erwinia_phage(20.0%) transposase,holin NA
DBSCAN-SWA_23 3280238 : 3331116 39 Planktothrix_phage(33.33%) transposase,tRNA,integrase,protease attL 3313912:3313930|attR 3333800:3333818
DBSCAN-SWA_24 3380003 : 3433744 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_25 3439899 : 3499199 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_26 3514137 : 3573259 48 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_27 3705383 : 3842713 121 uncultured_Mediterranean_phage(10.34%) transposase,tRNA,integrase attL 3750026:3750043|attR 3794666:3794683
DBSCAN-SWA_28 4004421 : 4069333 58 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage